{"meta":{"query_hash":"50b75acbea9a","filters":{"topic":"Immune Response and Inflammation"},"cohort_total":1935,"direct_labels_cover":2,"predictions_cover":1935,"exported":1935,"export_cap":100000,"truncated":false,"label_status":"direct model label, unvalidated","prediction_status":"machine_predicted_unvalidated (Codex and Gemma teacher distillation)","score_status":"score_only:v0-immature-baseline","snapshot":{"source":"OpenAlex, pinned release, all 482 partitions","release":"2026-06-24","frame_built":"2026-07-12"},"permalink":"https://metacan.xera.ac/q/50b75acbea9a","api":"https://metacan.xera.ac/api/v1/cohort?topic=Immune+Response+and+Inflammation"},"results":[{"id":"W1000939785","doi":"10.3233/ch-2008-1073","title":"Effects of N-acetylcysteine and tirilazad mesylate on intestinal functional capillary density, leukocyte adherence, mesenteric plasma extravasation and cytokine levels in experimental endotoxemia in rats","year":2008,"lang":"en","type":"article","venue":"Clinical Hemorheology and Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Victoria General Hospital; Dalhousie University","funders":"","keywords":"Extravasation; Medicine; Intravital microscopy; Cytokine; Tumor necrosis factor alpha; Malondialdehyde; Intestinal mucosa; Internal medicine; Endocrinology; Microcirculation; Pathology; Oxidative stress","score_opus":0.03709535530129232,"score_gpt":0.2876576985636404,"score_spread":0.25056234326234805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1000939785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966231,0.002511388,0.00013047179,0.00006920526,0.0002565595,0.0003430751,6.3458117e-7,0.000015337122,0.000050202103],"genre_scores_gemma":[0.99912167,0.00045897858,0.0000779569,0.00007791864,0.00002486479,0.000018826771,0.000060246344,0.000008668961,0.00015088622],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99830246,0.00046496175,0.0006482931,0.00035319486,0.000036190457,0.00019488831],"domain_scores_gemma":[0.9988176,0.0008105719,0.00020736629,0.00009528083,0.000044431392,0.000024728075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040782246,0.00017583558,0.00042527073,0.0002081569,0.00010017202,0.000004016249,0.000041655112,0.00036193972,0.000026205838],"category_scores_gemma":[0.00022418673,0.00017102667,0.000041684663,0.00010768776,0.00057366054,0.00012817582,0.00007295309,0.0003349341,0.000011149844],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015702331,0.00014312385,0.12064138,0.00005153412,0.00003204748,0.0000390643,0.000376209,0.000007844514,0.873282,0.0002643407,0.000024920166,0.0035672898],"study_design_scores_gemma":[0.003434132,0.0004341947,0.505631,0.00007067031,0.0000119159995,0.0005254296,0.000036940182,0.0001484832,0.48952127,0.00006758436,0.00002764848,0.00009071197],"about_ca_topic_score_codex":0.000049619874,"about_ca_topic_score_gemma":0.000025378973,"teacher_disagreement_score":0.38498965,"about_ca_system_score_codex":0.0000367369,"about_ca_system_score_gemma":0.000056889217,"threshold_uncertainty_score":0.6974265},"labels":[],"label_agreement":null},{"id":"W1016066146","doi":"10.1016/j.mvr.2015.06.004","title":"Experimental TLR4 inhibition improves intestinal microcirculation in endotoxemic rats","year":2015,"lang":"en","type":"article","venue":"Microvascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Microcirculation; TLR4; Intravital microscopy; Lipopolysaccharide; Perfusion; Cytokine; Sepsis; Antagonist; Internal medicine; Endocrinology; Medicine; Inflammation; Receptor; Immunology","score_opus":0.07335272145623967,"score_gpt":0.34412594364319216,"score_spread":0.2707732221869525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1016066146","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99098927,0.0071031624,0.00011043515,0.0001687558,0.00019379357,0.00057402195,4.1249535e-7,0.00005022461,0.0008099497],"genre_scores_gemma":[0.99867296,0.000029637251,0.0001099772,0.000030770192,0.00004569074,0.00010043747,0.0002291259,0.000023297154,0.0007581292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748105,0.0010455792,0.0003770293,0.00037388306,0.00015107157,0.00057140324],"domain_scores_gemma":[0.99917775,0.000109698274,0.000056962977,0.00034167065,0.00027519136,0.000038695805],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0025843256,0.00016085882,0.00021680212,0.00056319387,0.00016824435,0.000053169897,0.00018766339,0.00023308596,0.00013587342],"category_scores_gemma":[0.00033852397,0.00015945728,0.00010501533,0.00045329813,0.00024941363,0.00028722617,0.00017408552,0.00062489655,0.0015030291],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003383815,0.0001571232,0.00048254148,0.000014098359,0.000034572222,0.000023673663,0.0013179155,0.000006989171,0.9934831,0.00016691242,0.0014771814,0.0024974665],"study_design_scores_gemma":[0.0021846797,0.0002179605,0.001371028,0.000069570495,0.000004968794,0.00017975715,0.0016264524,0.00002176632,0.9843545,0.00021641898,0.009588916,0.00016400378],"about_ca_topic_score_codex":0.0005564924,"about_ca_topic_score_gemma":0.000022925278,"teacher_disagreement_score":0.009128667,"about_ca_system_score_codex":0.00041032833,"about_ca_system_score_gemma":0.00024154384,"threshold_uncertainty_score":0.99927443},"labels":[],"label_agreement":null},{"id":"W1016323489","doi":"10.1097/shk.0000000000000430","title":"TEMPORAL LINKS BETWEEN ENDOTOXIN ACTIVITY LEVELS AND INTERLEUKIN 6 CONCENTRATIONS IN ABDOMINAL SEPSIS","year":2015,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hudbay Minerals (Canada)","funders":"","keywords":"Medicine; Peritonitis; Sepsis; Pathophysiology; Gastroenterology; Internal medicine; Interleukin; Immune system; Concomitant; Prospective cohort study; Cytokine; Abdominal surgery; Immunology","score_opus":0.04514622776759107,"score_gpt":0.2889174221153578,"score_spread":0.24377119434776673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1016323489","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970443,0.00040509578,0.0006358751,0.000619017,0.0001696259,0.000175364,0.000015816844,0.000026206382,0.0009086926],"genre_scores_gemma":[0.9987429,0.000007550701,0.00011364712,0.000047001762,0.000032173037,0.000009048383,0.00004662888,0.00000634129,0.0009947065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918884,0.00024230848,0.00019729159,0.00015149429,0.000024257355,0.00019581668],"domain_scores_gemma":[0.99963135,0.000121105724,0.00006489507,0.00012546334,0.000034238965,0.000022938939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030867572,0.00010065516,0.00018687501,0.000090276044,0.000055697055,0.000016043972,0.000077747456,0.00025735577,0.000095627576],"category_scores_gemma":[0.00011111168,0.0000946674,0.000029586696,0.00008130958,0.00009663607,0.00017878559,0.000049728056,0.00033761625,0.00017289599],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064357993,0.00007533111,0.11875096,0.000016429894,0.00011461545,0.000012509235,0.0035268967,0.0000045593574,0.8014554,0.00037917058,0.0024896532,0.072530895],"study_design_scores_gemma":[0.002890496,0.00025302885,0.17873557,0.000045999674,0.000028205019,0.000031227504,0.0006067982,0.00004994107,0.78918344,0.00049860636,0.027446525,0.00023013807],"about_ca_topic_score_codex":0.00023295356,"about_ca_topic_score_gemma":0.00013040767,"teacher_disagreement_score":0.072300754,"about_ca_system_score_codex":0.00006488381,"about_ca_system_score_gemma":0.00011148557,"threshold_uncertainty_score":0.38604242},"labels":[],"label_agreement":null},{"id":"W1019982434","doi":"","title":"Toll-like receptors and sepsis","year":2007,"lang":"en","type":"article","venue":"Pure Amsterdam UMC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Toll; Sepsis; Receptor; Immunology; Medicine; Computer science; Internal medicine","score_opus":0.007771421272084892,"score_gpt":0.23488613319997562,"score_spread":0.22711471192789073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1019982434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98615324,0.0030067575,0.0003738697,0.00065249554,0.0016263246,0.00016405793,0.0000017111587,0.000090678266,0.007930855],"genre_scores_gemma":[0.98290783,0.00012844526,0.000092914925,0.00042202423,0.000053000076,0.0000066266516,0.00005381676,0.000014081561,0.016321283],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99917907,0.000080251055,0.00023139747,0.00018363989,0.000026828999,0.0002988136],"domain_scores_gemma":[0.9995699,0.00011443813,0.00006931127,0.00019257683,0.000033509623,0.000020257647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040858993,0.00012549531,0.00015849192,0.000112049755,0.00015533886,0.000016922633,0.0000965989,0.00021042764,0.0005103366],"category_scores_gemma":[0.000040837902,0.000109944536,0.0000496775,0.00009417111,0.00010287348,0.00012874488,0.000060928032,0.00016623431,0.00075240637],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001052592,0.00009971504,0.015306159,0.000054603042,0.00026463674,0.000024484449,0.0026695793,9.055762e-7,0.65929115,0.0017157339,0.06381736,0.25570306],"study_design_scores_gemma":[0.00093806896,0.00014982135,0.027826007,0.000025448146,0.00003664365,0.00013178002,0.0004208364,0.0000013031467,0.16039172,0.00015978295,0.8096961,0.00022249161],"about_ca_topic_score_codex":0.000017721039,"about_ca_topic_score_gemma":0.000023592667,"teacher_disagreement_score":0.74587876,"about_ca_system_score_codex":0.000022613685,"about_ca_system_score_gemma":0.000015619475,"threshold_uncertainty_score":0.96709126},"labels":[],"label_agreement":null},{"id":"W104083718","doi":"10.2119/molmed.2012.00033","title":"R-roscovitine Reduces Lung Inflammation Induced by Lipoteichoic Acid and Streptococcus pneumoniae","year":2012,"lang":"en","type":"article","venue":"Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"College of Medicine, University of Cincinnati; Cincinnati Children's Hospital Medical Center","keywords":"Lipoteichoic acid; Proinflammatory cytokine; Streptococcus pneumoniae; Immunology; Biology; Apoptosis; Inflammation; Bronchoalveolar lavage; Microbiology; Lung; Medicine; Antibiotics; Staphylococcus aureus; Internal medicine; Biochemistry","score_opus":0.007580190862648992,"score_gpt":0.25136884313766616,"score_spread":0.24378865227501717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W104083718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795024,0.016515244,0.00035464243,0.0021226078,0.00044476247,0.00032144986,0.0000027095252,0.00006916634,0.0006670138],"genre_scores_gemma":[0.9988058,0.00013131439,0.00001309012,0.00020369198,0.00012098461,0.000044807428,0.00026915484,0.000019619261,0.00039153156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878615,0.00024349979,0.00034438507,0.00019437647,0.00006821116,0.00036334677],"domain_scores_gemma":[0.99945754,0.00005891728,0.00015341748,0.00022814627,0.00005436927,0.00004758999],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004608344,0.00019349893,0.0002607208,0.00013965929,0.00012981669,0.000009633354,0.00010158553,0.00022362114,0.00023292328],"category_scores_gemma":[0.00023248316,0.00015974752,0.000032777654,0.0001421563,0.00014165479,0.00022115273,0.000052447664,0.00024471202,0.000092092116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045697652,0.000021091088,0.0004722856,0.000020610854,0.00007231184,0.0000021539693,0.00068261835,2.248497e-7,0.9839497,0.00020815946,0.00078958925,0.013735533],"study_design_scores_gemma":[0.0011896977,0.0001851248,0.0109594455,0.00008288321,0.0000711571,0.000027025317,0.00022169127,0.0000057594184,0.9713579,0.000021084456,0.015716445,0.0001617767],"about_ca_topic_score_codex":0.000033235516,"about_ca_topic_score_gemma":9.74876e-7,"teacher_disagreement_score":0.019303402,"about_ca_system_score_codex":0.00003732885,"about_ca_system_score_gemma":0.000023303297,"threshold_uncertainty_score":0.6514315},"labels":[],"label_agreement":null},{"id":"W111085397","doi":"10.4049/jimmunol.190.supp.63.17","title":"Regulatory T cell dysfunction in lipocalin 2 knockout mice exacerbates serum-induced arthritis (P1326)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"FOXP3; Arthritis; Immunology; Rheumatoid arthritis; Proinflammatory cytokine; CD11c; Inflammation; T cell; Regulatory T cell; Population; Immune system; Knockout mouse; Splenocyte; IL-2 receptor; Medicine; Innate immune system; Biology; Internal medicine; Phenotype; Receptor","score_opus":0.0066099185832974505,"score_gpt":0.1946627204751937,"score_spread":0.18805280189189624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W111085397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9744905,0.021915713,0.000050938044,0.0013641383,0.0014291563,0.00022718664,9.661728e-7,0.000020305937,0.00050106953],"genre_scores_gemma":[0.99585706,0.0023046026,0.000024292744,0.0001698353,0.00006751302,0.000008811287,0.000005753371,0.000019543573,0.0015425899],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973459,0.001210701,0.00087385543,0.000122065685,0.00005513868,0.0003923264],"domain_scores_gemma":[0.9984005,0.0004007266,0.00062728685,0.0003259787,0.00022976838,0.000015736565],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001130854,0.00019514782,0.00041251341,0.00032175102,0.00015949199,0.000016340302,0.0004025446,0.0003939475,0.0011579791],"category_scores_gemma":[0.00014624523,0.00013817391,0.00012239043,0.00019714053,0.00024489884,0.00037039604,0.00008493229,0.00086865545,0.0013511094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005926962,0.00008745375,0.00019282529,0.000006567251,0.00010555698,0.0000058957576,0.0012428794,0.000027129423,0.965432,0.000066577115,0.0016593995,0.030581033],"study_design_scores_gemma":[0.0033876463,0.0008520124,0.05848883,0.00010768091,0.000043786793,0.00109552,0.0024581635,0.000009476153,0.92526877,0.00044475778,0.007658837,0.00018454627],"about_ca_topic_score_codex":0.00027603473,"about_ca_topic_score_gemma":0.00003285086,"teacher_disagreement_score":0.058296006,"about_ca_system_score_codex":0.000100236684,"about_ca_system_score_gemma":0.00012704759,"threshold_uncertainty_score":0.9997551},"labels":[],"label_agreement":null},{"id":"W1128250901","doi":"","title":"Correlation of Loxl1 Expression in Lens Epithelial Cells With Clinical Signs of Pseudoexfoliation","year":2010,"lang":"en","type":"article","venue":"Investigative Ophthalmology & Visual Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"","keywords":"Pseudoexfoliation; Correlation; Ophthalmology; Expression (computer science); Medicine; Lens (geology); Pathology; Biology; Optometry; Computer science; Mathematics; Glaucoma","score_opus":0.03167062004052533,"score_gpt":0.32970956224233927,"score_spread":0.29803894220181393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1128250901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983309,0.000024655264,0.00006252559,0.000054622044,0.0006660357,0.00027141225,0.0000065033096,0.000011435587,0.0005719341],"genre_scores_gemma":[0.9991724,0.000005405486,0.0006497324,0.000018367684,0.000018067134,0.000011744349,0.00001528944,0.0000074011978,0.00010160683],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980689,0.00049241184,0.0006815829,0.00036044937,0.00011122257,0.00028539624],"domain_scores_gemma":[0.99835795,0.00049036916,0.0006000424,0.0002312904,0.00028902123,0.000031302654],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0017325011,0.0001454438,0.0003441461,0.0003006729,0.00011928809,0.0000053561957,0.00030553958,0.00031900877,0.00014722643],"category_scores_gemma":[0.00079269795,0.0001140986,0.000051179126,0.00059046975,0.005102155,0.0004416357,0.00009237608,0.00048770278,0.0000444874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033647259,0.00016592105,0.06347072,0.000008119146,0.000009344555,0.000005113945,0.0009344745,0.0000859996,0.934355,0.000367882,0.0000084240655,0.0002524827],"study_design_scores_gemma":[0.000689468,0.0011990721,0.19402802,0.000047862908,0.000009802056,0.000041533593,0.000116106625,0.0001439199,0.8029797,0.000623123,0.00002097523,0.00010041152],"about_ca_topic_score_codex":0.000090776964,"about_ca_topic_score_gemma":0.000009832173,"teacher_disagreement_score":0.13137534,"about_ca_system_score_codex":0.00002395586,"about_ca_system_score_gemma":0.0004471009,"threshold_uncertainty_score":0.9976054},"labels":[],"label_agreement":null},{"id":"W1140001397","doi":"10.1159/000430351","title":"The Innate Immune Receptor CD14 Mediates Lymphocyte Migration in EAE","year":2015,"lang":"en","type":"article","venue":"Cellular Physiology and Biochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Experimental autoimmune encephalomyelitis; Immunology; CD14; Innate immune system; Immune system; Multiple sclerosis; Biology; Innate lymphoid cell; Autoimmune disease; Inflammation; T cell; Medicine; Antibody","score_opus":0.006606253123857187,"score_gpt":0.19752667052804987,"score_spread":0.1909204174041927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1140001397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98053044,0.018391805,0.000004031392,0.0004235279,0.00039346382,0.000091753565,0.0000026884616,0.000022762806,0.00013951262],"genre_scores_gemma":[0.9962678,0.0012565204,0.000009602208,0.000045718614,0.000064769665,0.000025565761,0.0004127806,0.00000788833,0.001909332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906033,0.00019534853,0.00026112437,0.0002141749,0.000023462098,0.00024554186],"domain_scores_gemma":[0.9994772,0.00010259927,0.00010579488,0.00023638118,0.000058312275,0.000019686815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042405305,0.00014018787,0.00016767187,0.000032060325,0.0001602064,0.000011960364,0.00015730016,0.000319804,0.000029373949],"category_scores_gemma":[0.00016983521,0.00010028182,0.000041594736,0.000092008624,0.00036890904,0.000044233704,0.00008305665,0.00018928533,0.00015108817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004572057,0.000025584583,0.00020983319,0.000012795311,0.000032959717,0.0000015059761,0.00023310739,0.0000020251853,0.9970292,0.000056185294,0.0006431699,0.0012964675],"study_design_scores_gemma":[0.0009576424,0.000057140605,0.001756677,0.000015757822,0.000007882193,0.000016740732,0.00033491058,0.000016949554,0.9783582,0.00025364905,0.018100193,0.00012425406],"about_ca_topic_score_codex":0.00005057182,"about_ca_topic_score_gemma":0.000005748174,"teacher_disagreement_score":0.018670958,"about_ca_system_score_codex":0.00003662923,"about_ca_system_score_gemma":0.00009493793,"threshold_uncertainty_score":0.4089374},"labels":[],"label_agreement":null},{"id":"W114928251","doi":"10.1096/fasebj.26.1_supplement.835.11","title":"Expression of TLR10 in human lungs and neutrophils","year":2012,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Blot; Innate immune system; TLR2; Cell biology; Endocytosis; Receptor; TLR4; Toll-like receptor; Immune system; Immunology; Signal transduction; Gene; Biochemistry","score_opus":0.012207756459842073,"score_gpt":0.24527932584710116,"score_spread":0.2330715693872591,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W114928251","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547845,0.0037106862,0.000022524646,0.00014657107,0.00017331111,0.00004612273,5.7263964e-7,0.0000033723297,0.00041840711],"genre_scores_gemma":[0.9994399,0.00013465772,0.000009952447,0.000027614968,0.000044207525,0.0000010773724,0.0000024253661,0.000003582639,0.00033656892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936485,0.00024023242,0.0001887947,0.000032759453,0.000018628585,0.00015472548],"domain_scores_gemma":[0.9997204,0.0000535885,0.00011305596,0.0000856783,0.000016783393,0.000010503249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057788455,0.000051065927,0.000096361524,0.000071510214,0.00013549,0.0000057789566,0.00008298763,0.00006425944,0.00017754077],"category_scores_gemma":[0.000023846202,0.000030731215,0.000027757686,0.000037082653,0.000080817306,0.00014291833,0.000033700664,0.00023981927,0.000019041483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010295607,0.00002488874,0.00625528,0.0000031744755,0.000009442647,7.417089e-7,0.0011679969,0.000001391282,0.9910103,0.0003391259,0.00025454466,0.0008301418],"study_design_scores_gemma":[0.00054351037,0.000049839975,0.059649434,0.00003956903,0.000008975789,0.0002247717,0.0002634692,4.3416128e-7,0.9379834,0.00014280425,0.0010576425,0.000036166395],"about_ca_topic_score_codex":0.000012481711,"about_ca_topic_score_gemma":7.759057e-7,"teacher_disagreement_score":0.053394154,"about_ca_system_score_codex":0.000010396557,"about_ca_system_score_gemma":0.000010629053,"threshold_uncertainty_score":0.1943947},"labels":[],"label_agreement":null},{"id":"W125558691","doi":"10.1385/1-59745-167-3:237","title":"Micromethods for the Characterization of Lipid A-Core and O-Antigen Lipopolysaccharide","year":2006,"lang":"en","type":"review","venue":"Humana Press eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Lipopolysaccharide; Bacterial outer membrane; Biogenesis; Lipid A; Escherichia coli; Bacteria; Gram-negative bacteria; Microbiology; Bacterial cell structure; Antigen; Gene; Membrane; Chemistry; Biology; Biochemistry; Genetics; Immunology","score_opus":0.12552423622847447,"score_gpt":0.35155899112971817,"score_spread":0.2260347549012437,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W125558691","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020657413,0.99644715,0.0006933348,0.0000037961622,0.0005006788,0.0014657433,0.000107433196,0.000032593965,0.0005427163],"genre_scores_gemma":[0.000027162938,0.98898476,0.000066251574,0.000011898208,0.0001432994,0.00032742074,0.00061989576,0.000043882024,0.009775436],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.998503,0.00028141783,0.00068014243,0.00027175204,0.000029239842,0.00023441996],"domain_scores_gemma":[0.9983496,0.0004690322,0.0006812777,0.00041803817,0.00007418614,0.000007831268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004847326,0.0002949033,0.0009318711,0.00014572409,0.0002285642,0.000028393228,0.00031339563,0.00045213127,0.00002374649],"category_scores_gemma":[0.00004385292,0.00019855142,0.00029603738,0.000016867167,0.0002075708,0.000042458156,0.00010955627,0.00023557321,0.0000066359494],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038201742,0.000011321126,1.4760077e-7,0.0032177342,0.00036761392,2.651232e-7,0.0001415773,3.1024936e-8,0.029131604,0.0028785362,0.0003309156,0.963882],"study_design_scores_gemma":[0.00023379954,0.00004833699,0.0000135582795,0.0011675737,0.00063205377,0.000020989113,0.000004182604,0.0000011960245,0.020018347,0.00002371488,0.9776442,0.00019202135],"about_ca_topic_score_codex":0.00008975159,"about_ca_topic_score_gemma":0.0000039487527,"teacher_disagreement_score":0.97731334,"about_ca_system_score_codex":0.000016173035,"about_ca_system_score_gemma":0.00006443665,"threshold_uncertainty_score":0.8096692},"labels":[],"label_agreement":null},{"id":"W125755217","doi":"10.4049/jimmunol.178.supp.43.33","title":"The T cell response to staphylococcal superantigens is modulated by the bacterial cell wall (43.33)","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Superantigen; TLR2; T cell; Microbiology; Bacteria; Biology; Cell biology; Cell; Immunology; Inflammation; TLR4; Immune system; Biochemistry","score_opus":0.005669513578539035,"score_gpt":0.2169613136624787,"score_spread":0.21129180008393966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W125755217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812052,0.008530966,0.00030566688,0.0075539197,0.0018106808,0.00033125925,0.000013542703,0.00001760078,0.00023116346],"genre_scores_gemma":[0.99276745,0.00094691326,0.000014602371,0.00071737485,0.00008784871,0.0000032356054,0.000009157233,0.000027366938,0.00542603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99564546,0.002412557,0.0009829162,0.00014685994,0.00010181239,0.00071036484],"domain_scores_gemma":[0.99622446,0.0022452383,0.0005242493,0.0006548195,0.00032016385,0.00003104448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006028846,0.0002587824,0.00036834882,0.0001600683,0.00092813483,0.00004473268,0.0012094704,0.0003524667,0.0003975669],"category_scores_gemma":[0.00023796145,0.00012393932,0.00021271218,0.00025953748,0.0005120506,0.000118031145,0.00017267483,0.0009561934,0.0005907035],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.028476888,0.00008378361,0.000026080406,0.0000020902282,0.00025069967,0.000009581849,0.004140926,0.000009964822,0.9470528,0.000017532839,0.017594215,0.002335439],"study_design_scores_gemma":[0.0015391512,0.0009000895,0.0071282825,0.0000102942995,0.00006131361,0.0003868692,0.0013038189,0.000002023784,0.6853585,0.000036743462,0.30315349,0.00011941168],"about_ca_topic_score_codex":0.00010712195,"about_ca_topic_score_gemma":0.000018188468,"teacher_disagreement_score":0.28555927,"about_ca_system_score_codex":0.000093969524,"about_ca_system_score_gemma":0.00018386202,"threshold_uncertainty_score":0.75924957},"labels":[],"label_agreement":null},{"id":"W137712776","doi":"10.1007/s00418-004-0649-1","title":"Expression of integrin subunits av and �3 in acute lung inflammation","year":2004,"lang":"en","type":"article","venue":"Histochemistry and Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Saskatchewan Health Research Foundation; University of Saskatchewan","keywords":"Integrin; Inflammation; Biology; Immunohistochemistry; Streptococcus pneumoniae; Endothelium; Immunology; Molecular biology; Protein subunit; Microbiology; Receptor; Biochemistry; Endocrinology; Gene","score_opus":0.004597924178960794,"score_gpt":0.21024233380307197,"score_spread":0.20564440962411118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W137712776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99406064,0.003923225,0.00010651207,0.00008075841,0.00007008054,0.00009218099,0.000004289908,0.000012915195,0.0016494003],"genre_scores_gemma":[0.9987913,0.0004915954,0.000064853586,0.000011368663,0.000010360443,0.000012868725,0.00012970474,0.0000042090337,0.00048377653],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937564,0.00006090558,0.000248994,0.00016647406,0.000010106451,0.00013790016],"domain_scores_gemma":[0.99968755,0.00004550265,0.00011360656,0.00011397752,0.000027635951,0.000011729215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012766074,0.00010339914,0.00017712209,0.00006610935,0.00005217238,0.00000243779,0.00006142071,0.00030004396,0.000056949382],"category_scores_gemma":[0.00003085319,0.00009293455,0.000020489375,0.000052442603,0.00019081587,0.00005545113,0.00005199667,0.00017432994,0.000006681544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030533987,0.000020719937,0.00079644675,0.0000607044,0.000009036731,0.0000019433128,0.0004206076,0.0000036025965,0.9969788,0.00019531892,0.000025976973,0.0011815008],"study_design_scores_gemma":[0.0012190616,0.000060660394,0.0013007349,0.000056548015,0.000013613512,0.00002878897,0.00012080353,0.0000025666172,0.99489105,0.00025616508,0.0019559725,0.000094054834],"about_ca_topic_score_codex":0.000030558727,"about_ca_topic_score_gemma":0.0000033376364,"teacher_disagreement_score":0.0047306255,"about_ca_system_score_codex":0.000031275682,"about_ca_system_score_gemma":0.00003599679,"threshold_uncertainty_score":0.37897608},"labels":[],"label_agreement":null},{"id":"W1419959473","doi":"10.4049/jimmunol.190.supp.138.19","title":"The pro-inflammatory and anti-inflammatory TLR2 responses to <i>Staphylococcus aureus</i> can be uncoupled (P1242)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University","funders":"","keywords":"TLR2; Peptidoglycan; Internalization; TLR4; Toll-like receptor; Staphylococcus aureus; Microbiology; Pattern recognition receptor; Acquired immune system; Immunology; Cytokine; Lipoteichoic acid; Biology; Lipopolysaccharide; Receptor; Inflammation; Innate immune system; Immune system; Bacteria; Cell wall; Biochemistry","score_opus":0.00834154803214477,"score_gpt":0.2222180192651134,"score_spread":0.21387647123296863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1419959473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9685178,0.013947762,0.000038407998,0.015436473,0.0011904238,0.0006780244,0.000004724177,0.00003831821,0.00014806293],"genre_scores_gemma":[0.9939803,0.0024726477,0.000029609122,0.0008319709,0.00011331187,0.000041242965,0.000004293141,0.000035600853,0.0024910115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963386,0.0016591399,0.0010521859,0.00018112472,0.0001155898,0.00065332814],"domain_scores_gemma":[0.99636996,0.0016086332,0.00077929226,0.0006733173,0.00051678024,0.000052044605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025029255,0.00031934248,0.0005006932,0.00028464705,0.0009044747,0.000074299634,0.00091817026,0.00032169704,0.00016327524],"category_scores_gemma":[0.0007964671,0.00017751915,0.0001483539,0.00020457621,0.00086896634,0.00026512376,0.0002827738,0.0008993858,0.00027496464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020637242,0.00003194767,0.0010338882,0.000010652476,0.0005406858,0.000012700621,0.002110225,0.000011602794,0.97802466,0.00048495183,0.010847718,0.0048272684],"study_design_scores_gemma":[0.0033829105,0.001324697,0.11419395,0.00013126871,0.00021128674,0.0014573154,0.00563582,0.0000070346,0.5961751,0.00064066757,0.2763399,0.0005000756],"about_ca_topic_score_codex":0.00011351434,"about_ca_topic_score_gemma":0.000059890597,"teacher_disagreement_score":0.38184953,"about_ca_system_score_codex":0.00009346556,"about_ca_system_score_gemma":0.00037468632,"threshold_uncertainty_score":0.72390205},"labels":[],"label_agreement":null},{"id":"W1425871090","doi":"10.3233/nib-2011-002","title":"Nomenclature and Significance of Innate/Natural Immune Mechanisms and of Species Specific Resistance","year":2011,"lang":"en","type":"article","venue":"Advances in Neuroimmune Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Innate immune system; Nomenclature; Natural (archaeology); Resistance (ecology); Biology; Immunology; Immune system; Zoology; Ecology; Taxonomy (biology)","score_opus":0.011542542274783482,"score_gpt":0.22070231585251582,"score_spread":0.20915977357773233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1425871090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83313924,0.16374078,0.00017674515,0.000059638554,0.00066567236,0.00025926228,0.000016362992,0.000017263066,0.0019250251],"genre_scores_gemma":[0.9802932,0.018229058,0.0008154384,0.000016991076,0.0000059502545,0.000012348549,0.0000222418,0.000010768842,0.0005939931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985937,0.00025189575,0.00058073085,0.00029899995,0.000023288154,0.00025142153],"domain_scores_gemma":[0.99907106,0.00021188364,0.00035242853,0.0002939449,0.000062490995,0.000008188846],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002540116,0.0001822486,0.00048055954,0.00019953909,0.000053540687,0.000002343035,0.00021109518,0.00018418075,0.00006838861],"category_scores_gemma":[0.000082934435,0.00015879361,0.0000427377,0.00019658839,0.000840223,0.00020947769,0.00012417979,0.00027767514,0.000003731401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009763136,0.000041544536,0.0018262264,0.000056974215,0.000021219139,0.0000030676092,0.0006557854,3.3871203e-7,0.9229875,0.06986565,0.0000068648687,0.003558479],"study_design_scores_gemma":[0.0010573366,0.0003847957,0.17446946,0.000079604404,0.00001042441,0.00002557089,0.00028104038,9.1318833e-7,0.79520273,0.011326104,0.016973216,0.00018881151],"about_ca_topic_score_codex":0.000026157586,"about_ca_topic_score_gemma":0.000023924022,"teacher_disagreement_score":0.17264323,"about_ca_system_score_codex":0.000010547272,"about_ca_system_score_gemma":0.000017646626,"threshold_uncertainty_score":0.6475416},"labels":[],"label_agreement":null},{"id":"W142593898","doi":"10.4049/jimmunol.182.supp.95.11","title":"CD146+ T lymphocytes are increased in both the peripheral circulation and in the synovial fluids of patients with various musculoskeletal diseases and may facilitate T and B interactions (95.11)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital","funders":"","keywords":"CD146; Immunology; Molecular biology; C-C chemokine receptor type 7; In vitro; Cell biology; Chemistry; Biology; Inflammation; Chemokine; CD34; Biochemistry; Stem cell","score_opus":0.005595078711960523,"score_gpt":0.21638834933299703,"score_spread":0.2107932706210365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W142593898","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912083,0.0076347976,0.00002688067,0.00083729817,0.00007886619,0.00019082992,0.0000074148447,0.0000029222747,0.00001265275],"genre_scores_gemma":[0.99916744,0.0007135206,0.000006861915,0.000075878015,0.0000100210245,0.0000029736702,0.000008567816,0.000003995717,0.000010761436],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984301,0.0009323998,0.00037072052,0.00007759608,0.000043206794,0.00014599937],"domain_scores_gemma":[0.9990162,0.00048425767,0.0002825448,0.000139198,0.00007030443,0.0000074593568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004750564,0.00011588119,0.0002355918,0.00012114512,0.00014287126,0.000014092192,0.00013658601,0.0000734046,0.000012794813],"category_scores_gemma":[0.00013678659,0.00005594806,0.000033204935,0.00010807268,0.0004059114,0.00018247265,0.000031583026,0.000232145,5.707639e-7],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018839842,0.0006821386,0.68720293,0.000049476104,0.00055906555,0.000021305099,0.02073232,0.00017846789,0.24267651,0.0004632333,0.000102222046,0.02849252],"study_design_scores_gemma":[0.0026727677,0.0005990532,0.9933505,0.000053057953,0.00007978027,0.00023483532,0.0022072438,0.000025096655,0.00029505952,0.00016279815,0.0002557538,0.00006405083],"about_ca_topic_score_codex":0.00021083628,"about_ca_topic_score_gemma":0.0001242369,"teacher_disagreement_score":0.3061476,"about_ca_system_score_codex":0.000040899075,"about_ca_system_score_gemma":0.0000522072,"threshold_uncertainty_score":0.22814956},"labels":[],"label_agreement":null},{"id":"W1486935504","doi":"10.4049/jimmunol.1302392","title":"TRIL Is Involved in Cytokine Production in the Brain following <i>Escherichia coli</i> Infection","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"National Institute of Allergy and Infectious Diseases","keywords":"TLR4; TLR3; Chemokine; Innate immune system; Proinflammatory cytokine; Biology; Cytokine; Immune system; Escherichia coli infection; Escherichia coli; Immunology; In vivo; Cell biology; Mediator; Inflammation; Toll-like receptor; Gene; Biochemistry","score_opus":0.010584720666382141,"score_gpt":0.23463256243369876,"score_spread":0.22404784176731662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1486935504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98496,0.0022675178,0.00013194363,0.010902758,0.0013186064,0.00021066375,2.6764477e-7,0.000009172857,0.0001990779],"genre_scores_gemma":[0.99818254,0.0005138454,0.000012147511,0.00096734567,0.00007850836,0.000007835363,0.0000044009994,0.000009836776,0.0002235662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962325,0.0026988487,0.0006566136,0.00009785851,0.000054860393,0.0002593197],"domain_scores_gemma":[0.99864393,0.0005764923,0.00042397057,0.00027867523,0.00007222594,0.000004703675],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0048908833,0.00013401159,0.00030952424,0.00028975206,0.0001423728,0.000011706583,0.00032721084,0.000209943,0.000035519708],"category_scores_gemma":[0.00085105357,0.000079085905,0.00011893948,0.0004295487,0.00013263941,0.00022885355,0.0000393506,0.0008441161,0.000057639205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012879984,0.00010541908,0.0030081638,0.0000056062636,0.00012184366,0.0000031415389,0.0045636096,0.00005741901,0.9837982,0.00015089742,0.0015637483,0.0053339233],"study_design_scores_gemma":[0.0060679386,0.0015643351,0.28715548,0.00018673859,0.00012502648,0.00063152815,0.0024944555,0.000027153772,0.5926064,0.0016562585,0.10721848,0.0002662193],"about_ca_topic_score_codex":0.00028920465,"about_ca_topic_score_gemma":0.00020741537,"teacher_disagreement_score":0.39119184,"about_ca_system_score_codex":0.00007758445,"about_ca_system_score_gemma":0.000074400865,"threshold_uncertainty_score":0.36673114},"labels":[],"label_agreement":null},{"id":"W1487322990","doi":"10.1016/j.immuni.2015.07.003","title":"Orphan Nuclear Receptor ERRα Controls Macrophage Metabolic Signaling and A20 Expression to Negatively Regulate TLR-Induced Inflammation","year":2015,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":135,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; National Research Foundation of Korea; Korea Research Institute of Bioscience and Biotechnology; Ministry of Education; Ministry of Science, ICT and Future Planning; Hanyang University","keywords":"Inflammation; Biology; Cell biology; Sirtuin; Nuclear receptor; Transcription factor; Receptor; Sirtuin 1; Regulator; Mitochondrial biogenesis; Signal transduction; Downregulation and upregulation; NAD+ kinase; Immunology; Function (biology); Biochemistry","score_opus":0.02388955111000435,"score_gpt":0.2522060438537986,"score_spread":0.22831649274379423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1487322990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966079,0.0011260778,0.00014121205,0.00049088907,0.00043153632,0.0005158573,0.000009871583,0.00013395527,0.0005426899],"genre_scores_gemma":[0.9984037,0.000048396207,0.00041179644,0.00012475946,0.00006768736,0.000030213787,0.000086792395,0.000031295753,0.00079530716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977162,0.0011464844,0.00045430913,0.0002514703,0.00007760297,0.00035396602],"domain_scores_gemma":[0.998883,0.00016084345,0.00023328191,0.0004078873,0.00023549362,0.00007951081],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010894241,0.00024136477,0.00038821236,0.00019914031,0.00040815558,0.00006858588,0.00024330178,0.00029483583,0.00027749618],"category_scores_gemma":[0.00066756736,0.00021783316,0.00006722141,0.0002095172,0.000096107906,0.00047089576,0.00020269376,0.00040901374,0.0009931518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012757394,0.000030709314,0.000047587066,0.000008662876,0.000075307275,0.0000018064601,0.004392544,0.000016190475,0.9762189,0.00037823725,0.0005214752,0.017032847],"study_design_scores_gemma":[0.00212029,0.0002541581,0.0048627933,0.000075410135,0.00003435008,0.00001816551,0.0010404706,0.000021450112,0.94654506,0.00016451789,0.044615697,0.00024764595],"about_ca_topic_score_codex":0.0002579421,"about_ca_topic_score_gemma":0.000007718541,"teacher_disagreement_score":0.04409422,"about_ca_system_score_codex":0.000059140162,"about_ca_system_score_gemma":0.00007179783,"threshold_uncertainty_score":0.9997847},"labels":[],"label_agreement":null},{"id":"W1487730160","doi":"10.4049/jimmunol.179.8.5137","title":"<i>Mycobacterium bovis</i> Bacillus Calmette-Guerin Secreting Active Cathepsin S Stimulates Expression of Mature MHC Class II Molecules and Antigen Presentation in Human Macrophages","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Genentech; Michael Smith Health Research BC; British Columbia Lung Association","keywords":"MHC class II; Antigen presentation; Microbiology; Biology; MHC class I; Antigen processing; Mycobacterium bovis; Cathepsin S; Antigen; Phagosome; Secretion; T cell; Mycobacterium tuberculosis; Cathepsin L; Major histocompatibility complex; Cathepsin; Immunology; Immune system; Tuberculosis; Phagocytosis; Biochemistry; Medicine; Enzyme","score_opus":0.007039334085842811,"score_gpt":0.2508256958215871,"score_spread":0.24378636173574428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1487730160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99095994,0.007903012,0.00026377564,0.00029237557,0.00028861949,0.00017640712,0.0000063258844,0.000009276292,0.00010024413],"genre_scores_gemma":[0.9986139,0.0010337668,0.00009152233,0.000036020934,0.000030961946,0.0000013519161,0.00002151627,0.000015202391,0.00015577207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804,0.0007307564,0.0007460046,0.00011786565,0.00006023573,0.0003051144],"domain_scores_gemma":[0.9983882,0.00042187076,0.00081151666,0.00019654381,0.0001686613,0.00001321859],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012188205,0.00017594159,0.0003949013,0.0003065735,0.00022323566,0.000008341504,0.00026107646,0.00030851783,0.00005643634],"category_scores_gemma":[0.00015942565,0.000113049864,0.00007450156,0.00015158895,0.00034207004,0.00021055962,0.00016948805,0.00061395316,0.000003884599],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003078326,0.00006880956,0.0007939594,0.000019364215,0.00013520515,0.000016740814,0.0049013877,0.000050139897,0.98690534,0.00004647947,0.00007547126,0.0039087883],"study_design_scores_gemma":[0.0015533941,0.0005905451,0.07941462,0.00013355371,0.000040844883,0.00041242078,0.0022715854,0.0000046273926,0.914247,0.00011465083,0.0011119064,0.000104867824],"about_ca_topic_score_codex":0.00011547505,"about_ca_topic_score_gemma":0.00001679388,"teacher_disagreement_score":0.07862066,"about_ca_system_score_codex":0.000049067734,"about_ca_system_score_gemma":0.000042911826,"threshold_uncertainty_score":0.46100396},"labels":[],"label_agreement":null},{"id":"W149187243","doi":"10.1096/fasebj.21.6.a849-c","title":"An essential role for endothelial TLR4 in leukocyte recruitment","year":2007,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"TLR4; Endothelium; Immunology; Biology; Innate immune system; Population; Transgene; Genetically modified mouse; Immune system; Cell biology; Medicine; Endocrinology; Gene; Biochemistry","score_opus":0.023729262882591896,"score_gpt":0.2930377915486155,"score_spread":0.26930852866602356,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W149187243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99360013,0.00088221487,0.0036841787,0.00034558933,0.0008055299,0.00033328874,0.000004375304,0.000014361257,0.00033034888],"genre_scores_gemma":[0.9987277,0.000078375546,0.00009620585,0.00015448911,0.00024553743,0.000014344085,0.000023120361,0.000009975654,0.0006502879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901026,0.00022273272,0.00031587563,0.00008947935,0.000033822438,0.0003278297],"domain_scores_gemma":[0.9995133,0.00014585124,0.00012835176,0.00015041685,0.000044230794,0.00001780245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018361019,0.000091705464,0.000123794,0.00011711429,0.00028408572,0.0000282802,0.0002171473,0.000105071726,0.00018406149],"category_scores_gemma":[0.00004374514,0.00006178863,0.00008264687,0.000056541685,0.00006466473,0.00013855752,0.000017246399,0.0002950693,0.00008632799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001956969,0.000059346203,0.00014333108,0.0000015493142,0.000042007534,0.0000074850936,0.0010055242,0.000028813856,0.96796787,0.00036972153,0.00023915218,0.028178243],"study_design_scores_gemma":[0.0019422409,0.00026546608,0.0018966438,0.000014240249,0.000019919711,0.0003436103,0.0008218449,0.000023458151,0.966656,0.00052821054,0.027407892,0.00008045064],"about_ca_topic_score_codex":0.000025407093,"about_ca_topic_score_gemma":0.000042878677,"teacher_disagreement_score":0.028097793,"about_ca_system_score_codex":0.0000708976,"about_ca_system_score_gemma":0.00006116482,"threshold_uncertainty_score":0.25196674},"labels":[],"label_agreement":null},{"id":"W1492075964","doi":"10.1096/fasebj.28.1_supplement.1095.18","title":"The significance of IL‐10 stimulation in cardiac innate responses (1095.18)","year":2014,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"TLR2; TLR4; Receptor; Downregulation and upregulation; Stimulation; Signal transduction; Innate immune system; p38 mitogen-activated protein kinases; Endocrinology; Knockout mouse; Toll-like receptor; Tumor necrosis factor alpha; Internal medicine; Biology; Cell biology; Chemistry; Immunology; Medicine; MAPK/ERK pathway; Biochemistry; Gene","score_opus":0.015429012610695106,"score_gpt":0.2528074185275402,"score_spread":0.2373784059168451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1492075964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961162,0.001484773,0.0002184934,0.0007176963,0.00049039896,0.00013883416,0.0000040612263,0.000008327299,0.0008212074],"genre_scores_gemma":[0.99578524,0.00025731025,0.000010530238,0.000034326087,0.00005453463,0.0000061081105,0.0000056056406,0.0000066664993,0.003839698],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975163,0.0017876609,0.0003715891,0.000071329276,0.000052703086,0.00020044293],"domain_scores_gemma":[0.99819046,0.0012198505,0.00025709014,0.00022679014,0.000097161224,0.000008641322],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030734802,0.00008446903,0.00016272783,0.000087754655,0.00034838976,0.000024073128,0.0002404671,0.00008530874,0.00015684756],"category_scores_gemma":[0.00062749814,0.000046435296,0.00008296986,0.00012365967,0.00019030116,0.00009444013,0.00003121517,0.0003321495,0.00013487955],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015724811,0.00001383661,0.0012709309,0.0000030342596,0.000053522024,7.5176536e-7,0.00055034045,0.00028402798,0.9795278,0.0005589178,0.0011573937,0.015006968],"study_design_scores_gemma":[0.00086252665,0.00020728164,0.05760388,0.00004284679,0.000029068004,0.000039983395,0.0003832077,0.00013114141,0.88811356,0.000983431,0.0515058,0.000097303986],"about_ca_topic_score_codex":0.000024094237,"about_ca_topic_score_gemma":0.0000053889626,"teacher_disagreement_score":0.091414265,"about_ca_system_score_codex":0.000032155218,"about_ca_system_score_gemma":0.000079137746,"threshold_uncertainty_score":0.26795676},"labels":[],"label_agreement":null},{"id":"W1492105728","doi":"10.4049/jimmunol.173.11.7070","title":"TLR4 Contributes to Disease-Inducing Mechanisms Resulting in Central Nervous System Autoimmune Disease","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":207,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Cancer Foundation; University of Calgary","funders":"Fondation pour la Recherche Médicale; Multiple Sclerosis Society; Canada Research Chairs; Multiple Sclerosis Society of Canada; Canadian Association of Gastroenterology","keywords":"Experimental autoimmune encephalomyelitis; Immunology; Immune system; TLR4; Autoimmunity; Innate immune system; Biology; Autoimmune disease; Multiple sclerosis; Blood–brain barrier; Central nervous system; Neuroscience; Antibody","score_opus":0.007480739765957314,"score_gpt":0.21754916377503652,"score_spread":0.2100684240090792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1492105728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9721393,0.01526072,0.004918224,0.0053535975,0.0018512142,0.00037100053,0.000007935407,0.000043605956,0.000054375712],"genre_scores_gemma":[0.9992787,0.00020066023,0.0000842624,0.00019820602,0.000044331675,0.0000090864605,0.000013259556,0.000021954424,0.00014950708],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971815,0.0009035014,0.0010394019,0.0001583154,0.000073360956,0.0006439421],"domain_scores_gemma":[0.9984658,0.00031852874,0.00055556174,0.00042131587,0.0001856603,0.000053173135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013117387,0.00022462574,0.00049406034,0.0004096003,0.00029764543,0.000024043768,0.00060810527,0.00017034021,0.0000270573],"category_scores_gemma":[0.000776211,0.00015884392,0.00016231605,0.0003140528,0.00014124211,0.00019410174,0.0001583131,0.0006681484,0.00014918229],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008436969,0.00012390855,0.00020042282,0.000030913456,0.00034615662,0.00017849696,0.0016660544,0.004189942,0.9688472,0.012717368,0.000082423845,0.0031801162],"study_design_scores_gemma":[0.01203746,0.0009950065,0.6704902,0.002394875,0.00051794184,0.0012704196,0.0071588694,0.00006004531,0.29541203,0.004767206,0.0042837113,0.0006122286],"about_ca_topic_score_codex":0.00018619825,"about_ca_topic_score_gemma":0.000014447722,"teacher_disagreement_score":0.6734352,"about_ca_system_score_codex":0.00047808557,"about_ca_system_score_gemma":0.00042535254,"threshold_uncertainty_score":0.6477467},"labels":[],"label_agreement":null},{"id":"W1492668945","doi":"10.1096/fasebj.29.1_supplement.46.7","title":"Differential Role of Toll‐like Receptors in Elicitation of Cardiac Innate Response to IL‐10","year":2015,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"TLR2; TLR4; Receptor; Toll-like receptor; Cytokine; Signal transduction; Cell biology; Tumor necrosis factor alpha; Reperfusion injury; Medicine; Chemistry; Biology; Innate immune system; Immunology; Ischemia; Internal medicine","score_opus":0.011957341688118609,"score_gpt":0.2399698052330004,"score_spread":0.2280124635448818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1492668945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99778986,0.0006757556,0.000038499133,0.00031367227,0.0008450484,0.00012142595,0.0000065921126,0.0000053455587,0.0002037881],"genre_scores_gemma":[0.9985618,0.000049917904,0.00002683804,0.000018848275,0.000028853294,0.0000037004188,0.000011764057,0.0000070361257,0.0012912295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981442,0.0011500303,0.00040850605,0.000067749796,0.00006770163,0.00016182245],"domain_scores_gemma":[0.9992489,0.00018887367,0.00021660629,0.00015434637,0.00016918954,0.000022032735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013746526,0.000083246574,0.00021810205,0.00024568348,0.000057104135,0.000007463501,0.00017663231,0.0000989215,0.00021551568],"category_scores_gemma":[0.00036787044,0.00005851164,0.00008149731,0.00016795061,0.000073357995,0.000088347435,0.000044276778,0.00021668656,0.000107770524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008276882,0.00003460248,0.00050413626,0.0000022779868,0.000060733426,5.968128e-7,0.005085626,0.000054393066,0.9760537,0.000044518998,0.0013381741,0.008544365],"study_design_scores_gemma":[0.0008537758,0.00041306988,0.009586587,0.00004270336,0.000023816578,0.000025121388,0.00255888,0.000007758876,0.971635,0.00018163575,0.014602703,0.0000689491],"about_ca_topic_score_codex":0.000045509136,"about_ca_topic_score_gemma":0.0000051118623,"teacher_disagreement_score":0.0132645285,"about_ca_system_score_codex":0.000052877218,"about_ca_system_score_gemma":0.00013013343,"threshold_uncertainty_score":0.23860353},"labels":[],"label_agreement":null},{"id":"W1493515173","doi":"10.4049/jimmunol.1101912","title":"IL-27 Enhances LPS-Induced Proinflammatory Cytokine Production via Upregulation of TLR4 Expression and Signaling in Human Monocytes","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Proinflammatory cytokine; TLR4; CD14; Cell biology; Priming (agriculture); Downregulation and upregulation; Innate immune system; Lipopolysaccharide; TLR2; Cytokine; Signal transduction; Biology; Inflammation; Immunology; Chemistry; Immune system; Biochemistry","score_opus":0.02005527351507492,"score_gpt":0.23672380171877044,"score_spread":0.21666852820369553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1493515173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952223,0.003770034,0.00014823269,0.000092846574,0.00047798926,0.00020280412,3.964636e-7,0.000010252933,0.00007515754],"genre_scores_gemma":[0.9993845,0.0003600337,0.000096436626,0.0000050587983,0.00003948356,0.0000037153063,0.0000035574103,0.000010474133,0.00009673938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99816865,0.0007217815,0.0007735748,0.00010597571,0.00004552339,0.0001845092],"domain_scores_gemma":[0.99859136,0.00011291462,0.0009151154,0.0002049937,0.00016809594,0.00000753244],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012647982,0.00013423098,0.0003264669,0.00029950478,0.00012582354,0.0000033596402,0.00020698295,0.00019759074,0.00007523025],"category_scores_gemma":[0.00012398182,0.00009240234,0.000054343443,0.000116018084,0.0002305437,0.0003230783,0.0000629771,0.00035588254,0.000007611703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017503558,0.00008160296,0.000582375,0.000019038736,0.00010235972,0.0000018963938,0.0047728135,0.000013620377,0.98852617,0.00010281918,0.00001367426,0.004033263],"study_design_scores_gemma":[0.0008721226,0.00063787005,0.031769782,0.00017274426,0.000043242104,0.00027882578,0.00093011354,0.0000023282628,0.9642623,0.0008583926,0.00008533268,0.00008693156],"about_ca_topic_score_codex":0.000052392363,"about_ca_topic_score_gemma":0.0000088496745,"teacher_disagreement_score":0.031187406,"about_ca_system_score_codex":0.000035409194,"about_ca_system_score_gemma":0.000048815502,"threshold_uncertainty_score":0.3768058},"labels":[],"label_agreement":null},{"id":"W1494437758","doi":"10.4161/23723556.2014.981443","title":"The other face of TLR3: A driving force of breast cancer stem cells","year":2015,"lang":"en","type":"article","venue":"Molecular & Cellular Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Cancer research; Breast cancer; Cancer stem cell; Stem cell; TLR3; Cancer; Wnt signaling pathway; Biology; Cell biology; Signal transduction; Medicine; Chemistry; Immunology; Internal medicine; Immune system; Innate immune system","score_opus":0.011737603761048113,"score_gpt":0.24740811835809107,"score_spread":0.23567051459704297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1494437758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98185086,0.009763645,0.0049234433,0.00088574504,0.0006871613,0.0003261275,0.000014323786,0.000022530208,0.0015261756],"genre_scores_gemma":[0.99615943,0.00009521841,0.000044253055,0.000076103635,0.000016420772,0.000027352033,0.000008044002,0.00002277403,0.0035503975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832326,0.000663229,0.0004525912,0.00018510841,0.0000652181,0.000310608],"domain_scores_gemma":[0.99888,0.00013846581,0.00036897822,0.00038822574,0.00019941508,0.000024889296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006612659,0.0001509623,0.00036228565,0.000074185,0.000079224774,0.000005419718,0.00032391015,0.00029150108,0.00009010722],"category_scores_gemma":[0.000023015835,0.00011353187,0.0001333913,0.0001359153,0.00037813882,0.00004562791,0.00011549021,0.00019245493,0.0000862195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031661955,0.00006648402,0.00016185726,0.00001532533,0.00019995117,0.000008960118,0.0008244837,0.00017145096,0.98722935,0.0010472654,0.00053564913,0.00942261],"study_design_scores_gemma":[0.00096529705,0.00023811345,0.00013804235,0.00002584738,0.00006169469,0.000033292916,0.0007082517,0.0000389602,0.9109563,0.00008048077,0.08665017,0.00010351398],"about_ca_topic_score_codex":0.0002602488,"about_ca_topic_score_gemma":0.0000447749,"teacher_disagreement_score":0.086114526,"about_ca_system_score_codex":0.000091954986,"about_ca_system_score_gemma":0.00030411032,"threshold_uncertainty_score":0.46296954},"labels":[],"label_agreement":null},{"id":"W1497652734","doi":"10.1002/eji.201545564","title":"Soluble flagellin coimmunization attenuates Th1 priming to Salmonella and clearance by modulating dendritic cell activation and cytokine production","year":2015,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council","keywords":"TLR5; Flagellin; Priming (agriculture); Biology; Cell biology; Antigen; In vivo; T cell; Cytokine; Immunology; Immune system; Innate immune system; Toll-like receptor; Biochemistry; Receptor","score_opus":0.014925473531483447,"score_gpt":0.21211816424766733,"score_spread":0.1971926907161839,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1497652734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98851854,0.0055910763,0.004051229,0.0009290799,0.0005422875,0.00014822667,8.0066656e-7,0.000022458356,0.00019631881],"genre_scores_gemma":[0.9979626,0.00047243814,0.00073803705,0.00007027136,0.00006117447,0.0000011659965,0.00002008084,0.000027821434,0.0006464031],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981451,0.00087427686,0.0005373972,0.0001775093,0.000048410147,0.00021728167],"domain_scores_gemma":[0.99901277,0.0000939673,0.00042556724,0.00015299206,0.00028477397,0.000029908731],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012057079,0.00014780287,0.0002448069,0.00020129644,0.00017903454,0.00003508268,0.00013062755,0.00007512855,0.000009229381],"category_scores_gemma":[0.0005310993,0.00013954302,0.000027001122,0.00013709784,0.00011765935,0.00034943575,0.00009266939,0.0003176623,0.000057564575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061463827,0.00003953921,0.00024025314,0.000014113857,0.00005717697,0.0000047012263,0.0021226003,0.00022881426,0.9825318,0.00002042624,0.0011916654,0.012934296],"study_design_scores_gemma":[0.0017700003,0.0009017147,0.0077022812,0.00015822433,0.000040111,0.00053928344,0.0015381239,0.000047593447,0.97425616,0.000038173395,0.0128198825,0.00018844118],"about_ca_topic_score_codex":0.000009443902,"about_ca_topic_score_gemma":6.7601053e-7,"teacher_disagreement_score":0.012745854,"about_ca_system_score_codex":0.000044907523,"about_ca_system_score_gemma":0.00003587211,"threshold_uncertainty_score":0.5690399},"labels":[],"label_agreement":null},{"id":"W1498007334","doi":"10.4049/jimmunol.164.6.3255","title":"CD14 Employs Hydrophilic Regions to “Capture” Lipopolysaccharides","year":2000,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"","keywords":"CD14; Epitope; Innate immune system; Lipid A; Serine; Lipopolysaccharide; Monoclonal antibody; Biology; Biochemistry; Chemistry; Cell biology; Microbiology; Receptor; Antigen; Phosphorylation; Antibody; Genetics; Immunology","score_opus":0.009909113761367902,"score_gpt":0.2307747331120445,"score_spread":0.22086561935067658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1498007334","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97870964,0.011180406,0.00018772951,0.0075353994,0.0008094673,0.00015053434,0.0000018689738,0.000030053097,0.0013949197],"genre_scores_gemma":[0.9895308,0.0019162009,0.000042358777,0.00080027565,0.00009374833,0.00000404524,0.000003733583,0.000018905714,0.007589949],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99815226,0.00069070543,0.0006318096,0.00010393978,0.000052116055,0.0003691569],"domain_scores_gemma":[0.9988062,0.00030567113,0.00028067862,0.00044092548,0.00014380751,0.000022738763],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00080054527,0.0001732763,0.00035733508,0.00024230432,0.00028409934,0.000012969815,0.0006865503,0.00022460078,0.002400457],"category_scores_gemma":[0.00017224177,0.00011023845,0.00016132773,0.00024343461,0.00026683812,0.00015685873,0.00006177919,0.0006145215,0.0024984237],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021831184,0.000076670454,0.00003002332,0.0000023854873,0.00043847214,0.000013005531,0.0026757878,0.000082302366,0.959738,0.0007926137,0.009263224,0.024704373],"study_design_scores_gemma":[0.002193472,0.0019081115,0.0066326084,0.00010780983,0.00026052108,0.007864649,0.001323451,0.0000028649768,0.46995696,0.002230036,0.50715894,0.00036057507],"about_ca_topic_score_codex":0.00011054151,"about_ca_topic_score_gemma":0.00001131816,"teacher_disagreement_score":0.49789572,"about_ca_system_score_codex":0.000050252278,"about_ca_system_score_gemma":0.000096061325,"threshold_uncertainty_score":0.9985115},"labels":[],"label_agreement":null},{"id":"W1499659307","doi":"10.1038/82741","title":"Caspase inhibitors improve survival in sepsis: a critical role of the lymphocyte","year":2000,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":527,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Merck Canada Inc. (Canada)","funders":"National Institute of General Medical Sciences","keywords":"Sepsis; Lymphocyte; Immunology; Apoptosis; Biology; Medicine; Cancer research; Genetics","score_opus":0.0025134630119720844,"score_gpt":0.22448418391898015,"score_spread":0.22197072090700806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1499659307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96734816,0.02575291,8.525046e-7,0.0010492564,0.0020944804,0.00021656266,0.000014501416,0.00003489269,0.0034883872],"genre_scores_gemma":[0.9982235,0.00026018298,0.000011704952,0.00017853685,0.00004067099,0.000025360814,0.000020468044,0.000015755979,0.0012238236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818,0.00063234783,0.00045835268,0.0002593252,0.000049718077,0.00042027383],"domain_scores_gemma":[0.99900675,0.00032645796,0.00009434639,0.00047993168,0.00008322495,0.000009265128],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003205182,0.0001872956,0.00034076683,0.00013982499,0.00011653484,0.000006790947,0.00037910775,0.0011691413,0.0009358957],"category_scores_gemma":[0.00040713468,0.00013841328,0.00015043677,0.00030373674,0.0004779113,0.00011353336,0.000097226606,0.001081782,0.000273559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011630339,0.00013010885,0.00063902745,0.000010598434,0.000102480815,0.000006449829,0.00056315464,0.0000045737484,0.9555464,0.003746281,0.00019176152,0.037896123],"study_design_scores_gemma":[0.0021031462,0.0001812166,0.023820559,0.00006399011,0.000034515368,0.000083059895,0.0005100658,0.000008845072,0.9049287,0.0009807525,0.06708513,0.00020005458],"about_ca_topic_score_codex":0.00028682567,"about_ca_topic_score_gemma":0.000075070835,"teacher_disagreement_score":0.06689337,"about_ca_system_score_codex":0.00009394303,"about_ca_system_score_gemma":0.00016754745,"threshold_uncertainty_score":0.9999774},"labels":[],"label_agreement":null},{"id":"W1501882952","doi":"10.1111/j.1365-2249.2010.04249.x","title":"Forward genetic dissection of innate response to infection in inbred mouse strains: selected success stories","year":2010,"lang":"en","type":"review","venue":"Clinical & Experimental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Innate immune system; Biology; Effector; Host response; Immunology; Gene; Pathogen; Inflammatory response; Immune system; Genetics; Inflammation","score_opus":0.039433804620683126,"score_gpt":0.3985372066924559,"score_spread":0.35910340207177277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1501882952","genre_codex":"empirical","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.49997836,0.4970564,0.000016555954,0.0000167508,0.0019305561,0.00089172507,0.00002154365,0.00006742431,0.000020692398],"genre_scores_gemma":[0.1240092,0.87399805,0.0000685129,0.00002820286,0.000086009335,0.00052522885,0.00043339832,0.00009293412,0.0007584454],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918713,0.0038993333,0.0027679026,0.0007726843,0.000072764524,0.0006160146],"domain_scores_gemma":[0.9970156,0.0009449964,0.000999519,0.00078425795,0.0002086745,0.000046959714],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0012975725,0.00062056497,0.0024891724,0.0009372232,0.00015227048,0.000025028477,0.00052699004,0.0026060813,0.00028353077],"category_scores_gemma":[0.0017609828,0.00057652086,0.0005559618,0.0009158211,0.00067543675,0.00019309486,0.00033562985,0.0019400531,0.000389755],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006575441,0.0014417265,0.0005638913,0.0005709183,0.0009012222,0.000021362264,0.0011119182,0.0000019487813,0.54381216,0.000082510574,0.00017211786,0.4447448],"study_design_scores_gemma":[0.0032750417,0.0047068186,0.01646246,0.0018740575,0.0002997198,0.00025669363,0.00022795117,8.3665776e-7,0.16686442,0.000013581203,0.8050202,0.0009982169],"about_ca_topic_score_codex":0.00034932903,"about_ca_topic_score_gemma":0.00013838738,"teacher_disagreement_score":0.8048481,"about_ca_system_score_codex":0.00031228617,"about_ca_system_score_gemma":0.00054443005,"threshold_uncertainty_score":0.9996686},"labels":[],"label_agreement":null},{"id":"W1507191114","doi":"10.4049/jimmunol.168.7.3570","title":"Modulation of Leukotriene B4 Receptor-1 Expression by Dexamethasone: Potential Mechanism for Enhanced Neutrophil Survival","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Leukotriene B4; Dexamethasone; Chemotaxis; Receptor; Endocrinology; Internal medicine; Apoptosis; Leukotriene; Antagonist; Glucocorticoid receptor; Arachidonate 5-lipoxygenase; Messenger RNA; Chemistry; Inflammation; Biology; Medicine; Enzyme; Biochemistry; Gene","score_opus":0.012295123824055723,"score_gpt":0.2226349720070287,"score_spread":0.21033984818297297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1507191114","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9507302,0.0051541855,0.041442566,0.0006798593,0.0016957452,0.00021776624,0.000009977318,0.000012536251,0.00005715049],"genre_scores_gemma":[0.99668413,0.0020990546,0.00029802546,0.000033012762,0.00006646244,0.000006247597,0.000024618797,0.000018058061,0.000770411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99799323,0.0007994836,0.00075964595,0.00010728779,0.000068775415,0.0002715784],"domain_scores_gemma":[0.9979123,0.0004033837,0.0009875414,0.00026444747,0.00042080093,0.000011519918],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008563013,0.00015849827,0.00041720356,0.00015617089,0.00018922989,0.0000060711973,0.00037731093,0.00031402847,0.00043394265],"category_scores_gemma":[0.00028082103,0.00011041422,0.00017509598,0.00011321881,0.00018453822,0.00019300071,0.00005780868,0.0003440905,0.000042125474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025172844,0.00009974228,0.0000025738657,0.000007871962,0.00022725514,3.3157795e-7,0.0005568944,0.00009246695,0.9885062,0.000566658,0.0016211175,0.005801619],"study_design_scores_gemma":[0.0027310417,0.0010810929,0.00023420189,0.000038716895,0.00008083582,0.0000955806,0.00034791604,0.000061992025,0.99238956,0.0007948996,0.0020371177,0.000107063795],"about_ca_topic_score_codex":0.000014583258,"about_ca_topic_score_gemma":5.766215e-7,"teacher_disagreement_score":0.045953896,"about_ca_system_score_codex":0.000047307407,"about_ca_system_score_gemma":0.000032309003,"threshold_uncertainty_score":0.4751368},"labels":[],"label_agreement":null},{"id":"W1507795153","doi":"10.1155/2012/804173","title":"Interleukin-4 receptor −3223C→T Polymorphism is Associated with Increased Gastric Adenocarcinoma Risk","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Genotype; Gastroenterology; Internal medicine; Adenocarcinoma; Stomach cancer; Allele; Cancer; Population; Allele frequency; Oncology; Medicine; Biology; Genetics; Gene","score_opus":0.007515528627661343,"score_gpt":0.18452500848074183,"score_spread":0.1770094798530805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1507795153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954317,0.002275021,0.00027558327,0.0006226888,0.0010759076,0.00010452973,0.000058222762,0.000010578593,0.00014572119],"genre_scores_gemma":[0.9985635,0.00003500243,0.00009669358,0.0007627081,0.0001315835,0.000003858709,0.000057981375,0.000025784164,0.00032284053],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9975222,0.0008233737,0.00055495906,0.00013707683,0.00005105452,0.00091137335],"domain_scores_gemma":[0.9984398,0.00010940372,0.00074089057,0.00021079945,0.00021751705,0.00028162505],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00075456756,0.000222138,0.00046118922,0.0006705159,0.00019938879,0.000018652738,0.00031847364,0.00024809164,0.001797264],"category_scores_gemma":[0.000299039,0.00018489076,0.00015114539,0.0001619951,0.0002853461,0.0002875019,0.000019754812,0.000668332,0.00023466727],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001771957,0.00005992392,0.96450055,0.000003206843,0.000725592,0.00005253567,0.0010194213,0.0000019462793,0.012926064,0.000024454135,0.01830228,0.0006120909],"study_design_scores_gemma":[0.004718694,0.004068951,0.9584908,0.00010976746,0.0003061921,0.004662727,0.00037425407,0.0000023220764,0.008284689,0.00001442503,0.018776681,0.00019051613],"about_ca_topic_score_codex":0.0022754746,"about_ca_topic_score_gemma":0.0030325782,"teacher_disagreement_score":0.0060097473,"about_ca_system_score_codex":0.0002938931,"about_ca_system_score_gemma":0.00045617207,"threshold_uncertainty_score":0.9991152},"labels":[],"label_agreement":null},{"id":"W1515961553","doi":"10.3390/toxins7051821","title":"Superantigens Modulate Bacterial Density during Staphylococcus aureus Nasal Colonization","year":2015,"lang":"en","type":"article","venue":"Toxins","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Canadian Institutes of Health Research","keywords":"Superantigen; Staphylococcus aureus; Microbiology; Biology; Enterotoxin; Colonization; Staphylococcal infections; Immune system; Pathogen; Immunology; T cell; Bacteria; Gene; Escherichia coli; Genetics","score_opus":0.015020919522354332,"score_gpt":0.22513867705258364,"score_spread":0.21011775753022932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1515961553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974608,0.00020112966,0.00017791356,0.00015151818,0.0012918833,0.00019119566,0.000010315056,0.00012223508,0.00039303262],"genre_scores_gemma":[0.9976127,0.000017973263,0.000038625978,0.000041111947,0.000112488015,0.0000070265282,0.00019699267,0.00001493818,0.0019581164],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909264,0.00018378164,0.0002224956,0.00017956909,0.000038762195,0.000282749],"domain_scores_gemma":[0.9995337,0.000021922082,0.00006627286,0.00022560754,0.00012366552,0.000028845448],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020297925,0.00012844482,0.00017420368,0.00008867986,0.00017930174,0.000023383805,0.00011282022,0.00020654213,0.00029940184],"category_scores_gemma":[0.00010837037,0.00012440755,0.00005005744,0.00010331855,0.00006337118,0.00017944939,0.00006263472,0.00013701164,0.0010633763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067839754,0.000042132637,0.0022333106,0.0000069447747,0.000055450113,0.000008914307,0.0009812427,0.00005205174,0.9947088,0.00014840385,0.0008332806,0.00025111972],"study_design_scores_gemma":[0.0019205378,0.00010335645,0.07909789,0.000012053029,0.00001866087,0.000023724037,0.00010147363,0.000029274066,0.90871584,0.000051364234,0.009754262,0.0001715819],"about_ca_topic_score_codex":0.000091922666,"about_ca_topic_score_gemma":0.000051764542,"teacher_disagreement_score":0.08599293,"about_ca_system_score_codex":0.000077106604,"about_ca_system_score_gemma":0.00009932295,"threshold_uncertainty_score":0.99971443},"labels":[],"label_agreement":null},{"id":"W1516895518","doi":"10.1002/9780470923733.ch7","title":"Interferon, Cytokine Induction, and other Potential<i>In Vivo</i>Toxicities","year":2010,"lang":"en","type":"other","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Arbutus Biopharma (Canada)","funders":"","keywords":"In vivo; Cytokine; Interferon; Interferon γ; Immunology; Medicine; Biology; Interferon gamma; Biotechnology","score_opus":0.0063729104687867836,"score_gpt":0.21382161040174633,"score_spread":0.20744869993295953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1516895518","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029558945,0.005343956,0.00027401792,0.0003342568,0.0026711165,0.00047055137,0.000048619833,0.00029803938,0.9610005],"genre_scores_gemma":[0.021974463,0.000306012,0.000055132947,0.00021616492,0.00012243203,0.00001889644,0.000033478507,0.00015952882,0.9771139],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991907,0.000105546045,0.00023886256,0.00023547455,0.000020009425,0.00020941172],"domain_scores_gemma":[0.99960136,0.000018594834,0.000122013575,0.00023395097,0.000015369162,0.00000869473],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012936188,0.0002182702,0.00028496893,0.0004202861,0.000037832175,0.00001629087,0.00011226494,0.00089282927,0.03356837],"category_scores_gemma":[0.0000163982,0.00018258515,0.000042054315,0.000058173886,0.00019309392,0.000045011355,0.000058240497,0.00043886903,0.00055039464],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012180146,0.000031080956,0.00006850957,0.00002916195,0.00010327704,0.0000025915733,0.00015346172,1.1924719e-7,0.647062,0.0010279288,0.34877238,0.00262765],"study_design_scores_gemma":[0.0005597662,0.000059703714,0.00008772674,0.00008446565,0.000017343957,0.000052341125,0.00012999518,4.126903e-7,0.11180048,0.00005815332,0.8869568,0.00019280313],"about_ca_topic_score_codex":0.0011389501,"about_ca_topic_score_gemma":0.0012874228,"teacher_disagreement_score":0.5381844,"about_ca_system_score_codex":0.000012670063,"about_ca_system_score_gemma":0.0000268234,"threshold_uncertainty_score":0.9673151},"labels":[],"label_agreement":null},{"id":"W1521009884","doi":"10.4049/jimmunol.174.12.7823","title":"STAT-1 Mediates the Stimulatory Effect of IL-10 on CD14 Expression in Human Monocytic Cells","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"MAPK/ERK pathway; CD14; Cell biology; LY294002; PI3K/AKT/mTOR pathway; Phosphorylation; Proinflammatory cytokine; THP1 cell line; Protein kinase B; Chemistry; Biology; Signal transduction; Cancer research; Molecular biology; Cell culture; Immunology; Inflammation","score_opus":0.00724488019762277,"score_gpt":0.2481698516781561,"score_spread":0.24092497148053335,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1521009884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908654,0.00784204,0.000020110112,0.00045413102,0.0004126532,0.00018626677,0.0000020439707,0.000007372315,0.00020997744],"genre_scores_gemma":[0.9987108,0.000654077,0.0000078773055,0.000059634054,0.000050441937,0.0000035890996,0.000003906457,0.00001252658,0.0004971078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99683005,0.0020560282,0.0007114623,0.00008029857,0.00006278441,0.0002593636],"domain_scores_gemma":[0.997097,0.0017923507,0.00067271554,0.00034933406,0.00008034309,0.000008248804],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002099849,0.00016347742,0.00040892334,0.00023886608,0.00014876368,0.000004838709,0.00053394074,0.0002133943,0.00038163134],"category_scores_gemma":[0.00020433239,0.00008044466,0.00012293545,0.00010544597,0.00035417476,0.00011111328,0.00008242415,0.0007065943,0.00017356922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036269457,0.00007278701,0.00008639701,0.000008433216,0.00014134837,0.0000024812737,0.0013483544,0.0009993241,0.986232,0.000049301572,0.0010134936,0.0064191604],"study_design_scores_gemma":[0.0025651406,0.0020417778,0.004812182,0.000103565784,0.000059936447,0.00007924997,0.00027352985,0.000013939012,0.98283094,0.00007181724,0.0070704203,0.00007751391],"about_ca_topic_score_codex":0.000019684387,"about_ca_topic_score_gemma":0.000005173841,"teacher_disagreement_score":0.007845434,"about_ca_system_score_codex":0.00008051154,"about_ca_system_score_gemma":0.000059726084,"threshold_uncertainty_score":0.41785955},"labels":[],"label_agreement":null},{"id":"W1523615188","doi":"10.1186/ar1381","title":"Regulation of innate and adaptive immunity and autoimmunity by Toll-like receptor 9","year":2004,"lang":"en","type":"article","venue":"Arthritis Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Arthritis Network; School of Medicine, University of California, San Diego; Menzies Institute for Medical Research; National Cancer Institute; Arthritis Society; University of North Carolina at Chapel Hill; Genentech; National Institutes of Health; Biogen; Lupus Research Institute; Pfizer; Natural Sciences and Engineering Research Council of Canada; Dutch Arthritis Association; Oesterreichische Nationalbank; Deutsche Forschungsgemeinschaft; Nuffield Foundation; Physiotherapy Foundation of Canada; Canadian Institutes of Health Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Lupus Research Alliance; Wellcome Trust; Newcastle University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; Austrian Science Fund; Arthritis Foundation","keywords":"TLR9; Immunology; Autoimmunity; Immune system; CpG Oligodeoxynucleotide; Acquired immune system; Disease; Medicine; Antigen; Immunotherapy; Cancer immunotherapy; Biology; Clinical trial; Bioinformatics; Internal medicine; Gene","score_opus":0.02473399126861568,"score_gpt":0.2878423621402361,"score_spread":0.2631083708716204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1523615188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98219025,0.016041785,0.00004910124,0.00048573283,0.00007568909,0.0002625836,0.0000189506,0.000023597184,0.0008522855],"genre_scores_gemma":[0.9935591,0.005298418,0.00009845039,0.000014320067,0.000005947758,0.000019713825,0.00010751583,0.000009628544,0.0008868624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841416,0.00078126125,0.00026396726,0.00017278525,0.00008095709,0.00028687998],"domain_scores_gemma":[0.999201,0.00023854247,0.00006508071,0.00024123063,0.00023248479,0.000021667453],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013100875,0.00009638065,0.00019579873,0.00018513452,0.00041725318,0.000020715812,0.000110561516,0.00019050462,0.00017782132],"category_scores_gemma":[0.00022100566,0.00009641589,0.000024224413,0.00020459294,0.0008025851,0.0002454803,0.00017747778,0.0004695125,0.000081163394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043603338,0.00006441138,0.00017228608,0.000012966148,0.000041102194,9.2901786e-7,0.0013099979,0.0000012682174,0.9250992,0.0032473097,0.0009724135,0.068642095],"study_design_scores_gemma":[0.0035396488,0.0010521157,0.050940216,0.00023481013,0.0000053507897,0.00007311184,0.0013984208,0.000008030205,0.91119707,0.0038209313,0.027541816,0.00018846904],"about_ca_topic_score_codex":0.0011311801,"about_ca_topic_score_gemma":0.00006552779,"teacher_disagreement_score":0.06845363,"about_ca_system_score_codex":0.000042691976,"about_ca_system_score_gemma":0.0000863093,"threshold_uncertainty_score":0.3931726},"labels":[],"label_agreement":null},{"id":"W1524847211","doi":"10.1113/jphysiol.2007.132829","title":"Attenuated fever in rats during late pregnancy is linked to suppressed interleukin‐6 production after localized inflammation with turpentine","year":2007,"lang":"en","type":"article","venue":"The Journal of Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"Canadian Institutes of Health Research; Health Canada; Canadian Bureau for International Education","keywords":"Endocrinology; Internal medicine; Prostaglandin E2; Inflammation; Pregnancy; Interleukin; Cytokine; Receptor antagonist; Thymic involution; Receptor; Interleukin 6; Medicine; Chemistry; Antagonist; Biology; Immunology; Immune system","score_opus":0.006458664983992609,"score_gpt":0.22629086830047954,"score_spread":0.21983220331648692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1524847211","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977346,0.00045471496,0.00013538302,0.00091736467,0.00040119942,0.00032183083,7.8601045e-7,0.000012469157,0.000021665224],"genre_scores_gemma":[0.99901295,0.00007603552,0.000037593563,0.000085301814,0.00009040299,0.000007933387,0.000008954839,0.000013357576,0.0006674748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985265,0.00040285676,0.00060135993,0.00013119682,0.000050576404,0.00028747707],"domain_scores_gemma":[0.99905574,0.00009136467,0.00039342244,0.0002204743,0.0002224828,0.00001650712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00069073186,0.00014783788,0.00029302333,0.00026936174,0.00007167687,0.000006389634,0.00018614907,0.0001398592,0.00019592585],"category_scores_gemma":[0.000087950415,0.00009036329,0.000056079865,0.00024092289,0.00009604243,0.00022597866,0.000053505042,0.00038089888,0.00009902159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0138710365,0.000045659515,0.00048924447,0.000028822264,0.0001115327,0.000010926248,0.0030503,0.00032585123,0.9810292,0.000004539588,0.000062530824,0.0009703183],"study_design_scores_gemma":[0.0014860972,0.0002509119,0.2628902,0.00029733346,0.000035091074,0.00010971261,0.00013248078,0.000004461743,0.7341071,0.00007799347,0.0005195727,0.00008908341],"about_ca_topic_score_codex":0.000017966326,"about_ca_topic_score_gemma":0.00003354028,"teacher_disagreement_score":0.26240095,"about_ca_system_score_codex":0.000060465736,"about_ca_system_score_gemma":0.00003840858,"threshold_uncertainty_score":0.36849082},"labels":[],"label_agreement":null},{"id":"W1525588573","doi":"10.4049/jimmunol.179.6.4015","title":"Critical Negative Regulation of Type 1 T Cell Immunity and Immunopathology by Signaling Adaptor DAP12 during Intracellular Infection","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; McMaster University; McMaster University Medical Centre","funders":"National Institute of Allergy and Infectious Diseases; Colorado State University","keywords":"Biology; Immunopathology; Immunology; Intracellular; Immune system; Cytokine; T cell; Proinflammatory cytokine; Adoptive cell transfer; CD8; Innate immune system; Cell biology; Inflammation","score_opus":0.007668810529122281,"score_gpt":0.23228853837339128,"score_spread":0.224619727844269,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1525588573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98381233,0.013437324,0.0016238175,0.00017010418,0.00071873894,0.00011619346,0.0000023797272,0.000012721739,0.00010637865],"genre_scores_gemma":[0.9984252,0.0012056233,0.00012817589,0.000016526621,0.000037598496,7.30415e-7,0.0000096191125,0.000014767457,0.00016174864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975571,0.0011198163,0.0008651128,0.000098377015,0.00005606068,0.00030352216],"domain_scores_gemma":[0.99736303,0.0011776087,0.00071497593,0.00023466922,0.00049433,0.000015389887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024409248,0.00016366597,0.00038257378,0.0002507607,0.00028951318,0.000008140026,0.00020362664,0.00033576507,0.00012154564],"category_scores_gemma":[0.0007715455,0.00012449839,0.00007668383,0.00019565686,0.00069076725,0.00026890697,0.00009583961,0.00076503295,0.000017133685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038392013,0.000099451776,0.00039111124,0.000023498278,0.00015543056,0.000004131349,0.0015806102,0.000017949682,0.9923314,0.00023570773,0.000049399427,0.001272124],"study_design_scores_gemma":[0.0012179713,0.0009838474,0.041469824,0.000052230836,0.000118548596,0.0010443282,0.00096228963,0.00000453718,0.95327353,0.00034788894,0.0004170255,0.00010796677],"about_ca_topic_score_codex":0.00010462116,"about_ca_topic_score_gemma":0.0000033270899,"teacher_disagreement_score":0.041078713,"about_ca_system_score_codex":0.00006553096,"about_ca_system_score_gemma":0.00006657823,"threshold_uncertainty_score":0.50768965},"labels":[],"label_agreement":null},{"id":"W1525997337","doi":"10.1111/j.1440-1843.2012.02244.x","title":"AA genotype of IL‐8 −251A/T is associated with low PaO<sub>2</sub>/FiO<sub>2</sub> in critically ill patients and with increased IL‐8 expression","year":2012,"lang":"en","type":"article","venue":"Respirology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Medicine; ARDS; Single-nucleotide polymorphism; Septic shock; Genotype; Mechanical ventilation; Cohort; Intensive care; Gastroenterology; SNP; Sepsis; Acute respiratory distress; Internal medicine; Anesthesia; Lung; Gene; Intensive care medicine; Genetics","score_opus":0.0048814771379294825,"score_gpt":0.19949813156632043,"score_spread":0.19461665442839093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1525997337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780136,0.0009732327,0.000069732196,0.00023126988,0.00014877704,0.0004867131,0.000055331828,0.00005293906,0.000180652],"genre_scores_gemma":[0.9981665,0.00018009848,0.000044313096,0.0012164653,0.000027784208,0.000055439592,0.00023990584,0.000046357094,0.00002310874],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969789,0.0009993995,0.00062500255,0.00042816397,0.00011966582,0.00084888254],"domain_scores_gemma":[0.9980477,0.00053558534,0.00034863627,0.00038747507,0.0005996588,0.000080923426],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006503393,0.00035738826,0.00067242514,0.00034900263,0.0001560814,0.0000112296875,0.00018891194,0.0007421086,0.000062517574],"category_scores_gemma":[0.0009772942,0.00028106887,0.00006576407,0.00028510665,0.0005238339,0.00028779503,0.00013214804,0.0004834768,0.00009458448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043609934,0.0004988227,0.07335156,0.000043220345,0.00015142496,0.000012254559,0.0007474696,0.0000026680616,0.9164426,0.00006628716,0.00038027344,0.003942469],"study_design_scores_gemma":[0.0036863068,0.0012800886,0.2942685,0.00013270183,0.00006903235,0.000029018971,0.000056924062,0.0000057989514,0.6993329,0.00003940138,0.00083752105,0.00026179952],"about_ca_topic_score_codex":0.00005901995,"about_ca_topic_score_gemma":0.00008372905,"teacher_disagreement_score":0.22091693,"about_ca_system_score_codex":0.0000814591,"about_ca_system_score_gemma":0.00012962615,"threshold_uncertainty_score":0.9999641},"labels":[],"label_agreement":null},{"id":"W1527116370","doi":"10.1186/ar1347","title":"The nonsense allele oblivious reveals a sensor of di-acylglycerides acting in conjunction with TLR2 and TLR6","year":2004,"lang":"en","type":"article","venue":"Arthritis Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Arthritis Network; School of Medicine, University of California, San Diego; Menzies Institute for Medical Research; National Cancer Institute; Arthritis Society; University of North Carolina at Chapel Hill; Genentech; National Institutes of Health; Biogen; Lupus Research Institute; Pfizer; Natural Sciences and Engineering Research Council of Canada; Dutch Arthritis Association; Oesterreichische Nationalbank; Deutsche Forschungsgemeinschaft; Nuffield Foundation; Physiotherapy Foundation of Canada; Canadian Institutes of Health Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Lupus Research Alliance; Wellcome Trust; Newcastle University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; Austrian Science Fund; Arthritis Foundation","keywords":"Psychology","score_opus":0.024799723850251202,"score_gpt":0.29757744474379494,"score_spread":0.27277772089354374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1527116370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99316037,0.0048732636,0.000026524995,0.00095779565,0.0000480997,0.0003394962,0.000002231078,0.00001599049,0.000576255],"genre_scores_gemma":[0.99521375,0.0041398033,0.000045632918,0.000013913145,0.0000129444215,0.00003451688,0.000010796774,0.000011052011,0.00051761913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985151,0.00055737793,0.00027033692,0.00018208704,0.00008740111,0.00038768267],"domain_scores_gemma":[0.99880224,0.00071454246,0.00006892899,0.00021704436,0.00018152865,0.000015687705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014568955,0.00008737073,0.00017256779,0.00017079839,0.0003883842,0.00003460477,0.00008920142,0.00010732028,0.000026677717],"category_scores_gemma":[0.0005758015,0.000062559935,0.000023935938,0.00026177787,0.0005416934,0.00012989865,0.000069037014,0.0003830526,0.000058527457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023020462,0.00007095574,0.0028976626,0.000023687973,0.00005650896,0.000050746537,0.0020910415,0.000025970226,0.91418374,0.0015374369,0.00017740714,0.076582804],"study_design_scores_gemma":[0.0092431195,0.0024920325,0.10041497,0.00078183063,0.000009212806,0.00094480196,0.010951421,0.00001208201,0.8533732,0.0014606729,0.01998978,0.0003268569],"about_ca_topic_score_codex":0.0010153695,"about_ca_topic_score_gemma":0.0012934438,"teacher_disagreement_score":0.09751731,"about_ca_system_score_codex":0.000043173095,"about_ca_system_score_gemma":0.000110599176,"threshold_uncertainty_score":0.29871765},"labels":[],"label_agreement":null},{"id":"W1528669066","doi":"10.1111/j.1600-0897.2007.00558.x","title":"REVIEW ARTICLE: The Role of Toll‐Like Receptor Ligands/Agonists in Protection Against Genital HSV‐2 Infection","year":2007,"lang":"en","type":"review","venue":"American Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Hospital for Sick Children","keywords":"Innate immune system; Immunology; Herpes simplex virus; Toll-like receptor; Biology; Viral replication; Virology; Immune system; HSL and HSV; Virus","score_opus":0.0162361747718161,"score_gpt":0.29110289512168197,"score_spread":0.27486672034986587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1528669066","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02528907,0.97196573,0.00003575261,0.00018838054,0.0012864248,0.0010931406,0.000005632805,0.00001711959,0.00011875293],"genre_scores_gemma":[0.005930229,0.9935379,0.000032902353,0.00005464781,0.00017901178,0.00006571254,0.0000310156,0.000042250394,0.00012630365],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949231,0.0019356271,0.0021628572,0.00044459582,0.0000950676,0.00043874737],"domain_scores_gemma":[0.99415225,0.00031890758,0.0041724206,0.0007599662,0.0005776464,0.000018797642],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0029374668,0.00042791106,0.0023783762,0.0007404872,0.00013450063,0.000011190343,0.00044835467,0.00036651074,0.00005587511],"category_scores_gemma":[0.0011440015,0.00029196704,0.0006707827,0.0012441745,0.0010983297,0.00023018206,0.00011771014,0.0018242543,0.00012900446],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050718215,0.00015203626,0.000023154475,0.0009010356,0.0009803358,0.0000060799375,0.00031084093,0.0000011510023,0.02602655,0.000025098003,0.00020465102,0.9708619],"study_design_scores_gemma":[0.00037834723,0.0013616096,0.00015508203,0.00947744,0.00046814757,0.002354341,0.00036167272,1.02663364e-7,0.021998834,0.000030383646,0.9631446,0.00026942763],"about_ca_topic_score_codex":0.00017672237,"about_ca_topic_score_gemma":0.000011989826,"teacher_disagreement_score":0.97059244,"about_ca_system_score_codex":0.00033382387,"about_ca_system_score_gemma":0.00052237906,"threshold_uncertainty_score":0.99995327},"labels":[],"label_agreement":null},{"id":"W1530840473","doi":"10.17533/udea.rccp.324820","title":"Intestinal expression of pro-infammatory cytokines induced by oral intake of lipopolysaccharide (LPS) from E. coli in weaned pigs","year":2013,"lang":"en","type":"article","venue":"Revista Colombiana de Ciencias Pecuarias","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Lipopolysaccharide; Biology; Microbiology; Immunology","score_opus":0.01623270353752458,"score_gpt":0.24270555723572249,"score_spread":0.22647285369819792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1530840473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970407,0.001458484,0.00010191979,0.000097797085,0.00013673921,0.0007270886,0.000028753262,0.000043003074,0.00036550857],"genre_scores_gemma":[0.99907535,0.00007324397,0.00023795517,0.00006646437,0.000017243241,0.00009256331,0.00012644345,0.000021215015,0.00028952656],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748755,0.0005568286,0.0010302219,0.0003629592,0.00011676492,0.00044567953],"domain_scores_gemma":[0.9982244,0.00036280058,0.0006587212,0.00044764963,0.0002599849,0.000046442077],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007242119,0.00025640833,0.0006631088,0.0002772657,0.000087928565,0.000032107306,0.00048478084,0.00036859934,0.000828029],"category_scores_gemma":[0.0009870253,0.00024265061,0.00012157847,0.00035224622,0.00025415164,0.00032712123,0.0001530919,0.00036675317,0.000099790406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000336791,0.00019648501,0.0051026656,0.000063874955,0.00003285565,0.000004090869,0.0010854224,0.0000017417731,0.9872609,0.0005060726,0.002258808,0.0031503187],"study_design_scores_gemma":[0.0013115536,0.00033637052,0.07555139,0.00033432958,0.000036659,0.0000130143535,0.0009182685,0.000028190832,0.9193835,0.00020724244,0.0016391167,0.00024033611],"about_ca_topic_score_codex":0.0028801993,"about_ca_topic_score_gemma":0.00007306517,"teacher_disagreement_score":0.07044872,"about_ca_system_score_codex":0.00015297031,"about_ca_system_score_gemma":0.00038327088,"threshold_uncertainty_score":0.98950046},"labels":[],"label_agreement":null},{"id":"W1531846249","doi":"10.1159/000315914","title":"Endotoxin in the Pathogenesis of Sepsis","year":2010,"lang":"en","type":"review","venue":"Contributions to nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"","keywords":"Sepsis; Host response; Medicine; Immunology; Disease; Population; Innate immune system; Immune system; Pathogenesis; Intensive care medicine; Internal medicine","score_opus":0.01765592978184533,"score_gpt":0.31800125189239814,"score_spread":0.3003453221105528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1531846249","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006199844,0.9960501,0.0001221268,0.00065278285,0.0004862114,0.0013621547,0.00043213443,0.000023398925,0.00025106763],"genre_scores_gemma":[0.0009988423,0.9966503,0.000022017946,0.00037484104,0.00006568107,0.0007469676,0.0008304747,0.000019586854,0.0002913335],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965861,0.0017433321,0.000880085,0.00029938555,0.000035229456,0.000455856],"domain_scores_gemma":[0.9975098,0.0012590778,0.0003427323,0.0007221363,0.00015055753,0.00001570986],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010619399,0.00029641044,0.0013560839,0.00052893657,0.00013875448,0.000008713266,0.00066423474,0.0012183205,0.00032388198],"category_scores_gemma":[0.0008424842,0.00020152549,0.00041257442,0.0005956237,0.00021701616,0.00003868598,0.00011784601,0.0008360767,0.0011241431],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089635716,0.00015826852,0.0000049001774,0.0004092812,0.00024570752,0.000015063381,0.00024675843,6.4864275e-7,0.032187797,0.0077689034,0.005469145,0.9534039],"study_design_scores_gemma":[0.00036715218,0.00011975507,0.00014074662,0.00030039443,0.00036434672,0.00018186461,0.00001881111,1.2694564e-7,0.0006407436,0.00007258758,0.9976236,0.00016984546],"about_ca_topic_score_codex":0.000044440214,"about_ca_topic_score_gemma":0.000075608026,"teacher_disagreement_score":0.9921545,"about_ca_system_score_codex":0.000066807996,"about_ca_system_score_gemma":0.00036564106,"threshold_uncertainty_score":0.9996536},"labels":[],"label_agreement":null},{"id":"W1533007713","doi":"10.4049/jimmunol.0804135","title":"Leukotriene B4 Potentiates CpG Signaling for Enhanced Cytokine Secretion by Human Leukocytes","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"TLR9; Secretion; Proinflammatory cytokine; Leukotriene B4; CpG Oligodeoxynucleotide; p38 mitogen-activated protein kinases; Cell biology; Biology; Innate immune system; Cytokine; Signal transduction; Immune system; Immunology; Inflammation; MAPK/ERK pathway; Biochemistry; Gene expression","score_opus":0.00893805393672138,"score_gpt":0.24321132829724587,"score_spread":0.2342732743605245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1533007713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97092485,0.012462098,0.014427846,0.001343603,0.0004914678,0.00020658252,0.0000055951564,0.000026296737,0.00011163997],"genre_scores_gemma":[0.99817836,0.0006299874,0.00007734247,0.0001974252,0.00008400015,0.000005852476,0.000071694936,0.000013527958,0.0007418044],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983115,0.00044690695,0.00072840473,0.00010929733,0.000047433863,0.00035645164],"domain_scores_gemma":[0.99837464,0.0003419315,0.0007500615,0.00021901933,0.00030228036,0.000012040455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011144447,0.0001822015,0.0003913302,0.00017747136,0.00042108257,0.000017199098,0.00041605864,0.00025872656,0.00019709178],"category_scores_gemma":[0.00018978896,0.00012531705,0.00018090084,0.000117755815,0.00018046892,0.00021498984,0.000030251182,0.00041783944,0.000042263408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021190776,0.00007088574,0.000003997981,0.000004341058,0.00028530564,0.0000011692177,0.0004690983,0.00005703869,0.98716295,0.0005933141,0.0017752061,0.007457624],"study_design_scores_gemma":[0.002439828,0.0021419749,0.00067842077,0.00004935057,0.00013672584,0.0003012032,0.00051613647,0.0000050019016,0.9817438,0.0021964258,0.0096545415,0.000136586],"about_ca_topic_score_codex":0.00001626653,"about_ca_topic_score_gemma":0.000001412838,"teacher_disagreement_score":0.027253496,"about_ca_system_score_codex":0.00007427851,"about_ca_system_score_gemma":0.00006850842,"threshold_uncertainty_score":0.5110281},"labels":[],"label_agreement":null},{"id":"W1536891080","doi":"10.1096/fasebj.29.1_supplement.lb435","title":"Neutrophilia Delays Equine Neutrophil Apoptosis","year":2015,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Neutrophilia; Propidium iodide; Apoptosis; Ex vivo; Annexin; Incubation; In vivo; Reperfusion injury; Andrology; Immunology; Granulocyte; In vitro; Medicine; Chemistry; Ischemia; Biology; Internal medicine; Programmed cell death; Biochemistry","score_opus":0.02664668583611306,"score_gpt":0.24220623008780387,"score_spread":0.2155595442516908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1536891080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895242,0.0028116559,0.0003015085,0.0034871895,0.0015683956,0.0000951341,0.0000028041777,0.00003920595,0.0021699124],"genre_scores_gemma":[0.99619406,0.00018649701,0.000035234865,0.0003480358,0.0002553758,0.00000471957,0.00001690162,0.000014672175,0.002944528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987433,0.0004302552,0.00031717098,0.00010342058,0.00006345712,0.00034237123],"domain_scores_gemma":[0.99928015,0.00007512891,0.00017463054,0.00027089537,0.00015261094,0.000046576053],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00087456364,0.00013894991,0.00017446368,0.000098337216,0.00038207098,0.000050632712,0.00036638096,0.00012234945,0.00036322116],"category_scores_gemma":[0.00009752297,0.00008514892,0.00011691074,0.00012747315,0.00014129617,0.00018907501,0.00008045284,0.00055417506,0.0017627071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052426,0.000033221317,0.000111906535,0.00000154276,0.00010807232,0.000007770535,0.0005431017,0.00011039643,0.9778421,0.0006502206,0.016664876,0.0034025651],"study_design_scores_gemma":[0.0020850925,0.00061427,0.0006407277,0.000022409447,0.000090639565,0.0018135369,0.000611757,0.00002194164,0.94036716,0.0011737791,0.052377515,0.00018117121],"about_ca_topic_score_codex":0.000020452278,"about_ca_topic_score_gemma":0.0000012537846,"teacher_disagreement_score":0.037474908,"about_ca_system_score_codex":0.00006790165,"about_ca_system_score_gemma":0.0001312871,"threshold_uncertainty_score":0.99901456},"labels":[],"label_agreement":null},{"id":"W1540886610","doi":"10.1111/j.1600-6143.2012.04196.x","title":"Induction of Alloimmune Tolerance in Heart Transplantation Through Gene Silencing of TLR Adaptors","year":2012,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"Canadian Institutes of Health Research","keywords":"TRIF; Gene silencing; FOXP3; Medicine; Transplantation; Cancer research; Immune system; Receptor; Small interfering RNA; Immunology; In vivo; Signal transduction; Heart transplantation; Innate immune system; Cell biology; Biology; Toll-like receptor; Gene; Transfection; Internal medicine","score_opus":0.011502808539818164,"score_gpt":0.24742636638379797,"score_spread":0.2359235578439798,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1540886610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98978907,0.0016142026,0.007907448,0.0000951299,0.000445014,0.000094268435,0.00000989562,0.000005073344,0.00003988578],"genre_scores_gemma":[0.9961734,0.002352198,0.001350354,0.00002216413,0.000033854856,0.000002411589,0.00004605247,0.000009535315,0.0000100571015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984981,0.00031543509,0.00083967217,0.000074494965,0.00008686501,0.00018545485],"domain_scores_gemma":[0.998861,0.00013754201,0.00078316446,0.00008629432,0.00011913893,0.000012819219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005494917,0.00011075646,0.00038621388,0.00024284716,0.00003317053,0.0000022066074,0.00009388132,0.00007914463,0.000032596778],"category_scores_gemma":[0.000016005064,0.000103261154,0.000108420645,0.0002818274,0.00015046085,0.0006448653,0.0000021792769,0.00019828396,0.0000044378644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020202487,0.000108980086,0.0072862636,0.00007953099,0.00006733717,0.0000018751831,0.014148583,0.00084838807,0.967918,0.00006600848,0.0000076066767,0.0074471934],"study_design_scores_gemma":[0.0011132297,0.0004437521,0.19074433,0.0002235884,0.00009223735,0.00037400122,0.0013526399,0.0000044766243,0.80547166,0.0000124896,0.000086678876,0.00008091357],"about_ca_topic_score_codex":0.00036459585,"about_ca_topic_score_gemma":0.000010555504,"teacher_disagreement_score":0.18345806,"about_ca_system_score_codex":0.000035974437,"about_ca_system_score_gemma":0.000061960156,"threshold_uncertainty_score":0.4210868},"labels":[],"label_agreement":null},{"id":"W1542681822","doi":"10.1159/000430913","title":"TIR-Domain-Containing Adaptor-Inducing Interferon-β (TRIF) Mediates Antibacterial Defense during Gram-Negative Pneumonia by Inducing Interferon-&amp;#947;","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TRIF; Microbiology; Interferon; Signal transducing adaptor protein; Klebsiella pneumoniae; Immunology; Biology; Toll-like receptor; Innate immune system; Signal transduction; Immune system; Cell biology; Escherichia coli; Biochemistry; Gene","score_opus":0.025773745312804786,"score_gpt":0.2580995220741041,"score_spread":0.23232577676129929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1542681822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944044,0.0016366736,0.00030037246,0.00034302243,0.002670425,0.00021390326,0.000022470043,0.00005632271,0.00035246162],"genre_scores_gemma":[0.99867684,0.000199712,0.0003358692,0.00007798707,0.00021889227,0.0000060992106,0.00007894575,0.000053532112,0.0003521109],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9956094,0.0016837439,0.0015746831,0.00027266302,0.00017941261,0.000680116],"domain_scores_gemma":[0.9966975,0.0005019345,0.0015478302,0.00046003767,0.00067164405,0.000121042314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002903688,0.0004596037,0.0008834897,0.00058226904,0.00040731605,0.00013156467,0.0006993487,0.00048609625,0.00011328635],"category_scores_gemma":[0.0014431122,0.00040286157,0.00026176305,0.00031887737,0.00026493467,0.0011101667,0.00035905588,0.0020958479,0.000121089746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0070486367,0.00015269827,0.0008630335,0.000026565565,0.0005383334,0.0000291161,0.013535861,0.000012791337,0.97382367,0.000017925808,0.0007277616,0.0032236062],"study_design_scores_gemma":[0.0062847594,0.0021409602,0.005238063,0.00072520226,0.00011330531,0.0011207039,0.009772748,0.0000047519634,0.9669922,0.00015367455,0.006905838,0.00054780045],"about_ca_topic_score_codex":0.00036094015,"about_ca_topic_score_gemma":0.000040776646,"teacher_disagreement_score":0.006831477,"about_ca_system_score_codex":0.0005078223,"about_ca_system_score_gemma":0.00036241638,"threshold_uncertainty_score":0.99984235},"labels":[],"label_agreement":null},{"id":"W1542844386","doi":"10.4049/jimmunol.174.8.5124","title":"Neutrophils That Infiltrate the Central Nervous System Regulate T Cell Responses","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Immunology; Experimental autoimmune encephalomyelitis; Biology; Central nervous system; T cell; Inflammation; Effector; Neuroscience; Immune system","score_opus":0.010592106160649116,"score_gpt":0.20847538762497944,"score_spread":0.19788328146433032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1542844386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9686286,0.022446902,0.00012416772,0.0063560675,0.0014304402,0.00019210562,0.0000034003046,0.000034525914,0.00078382826],"genre_scores_gemma":[0.99503314,0.0015050531,0.000024736437,0.0002558717,0.00018324073,0.0000032090977,0.000003909521,0.00002002421,0.0029707812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962108,0.0023526847,0.00072667433,0.000103504586,0.00007265043,0.00053367123],"domain_scores_gemma":[0.99767566,0.0007208919,0.00088122307,0.00053927815,0.00016550238,0.00001743306],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001676442,0.00021504381,0.00038063843,0.00016661723,0.00047335614,0.000028784982,0.00087369443,0.00025281624,0.00015005721],"category_scores_gemma":[0.00008434651,0.000109533416,0.00020473039,0.00014831075,0.00047290963,0.00024255508,0.00010779726,0.00080128876,0.00040438495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051179403,0.00005154651,0.00009519485,0.000010546824,0.00037958435,0.000017117945,0.0020662053,0.00030142977,0.9806511,0.0008914501,0.0026461913,0.007771721],"study_design_scores_gemma":[0.002169216,0.0007381341,0.043812323,0.000082990045,0.0002548292,0.00849383,0.0033901744,0.00001626149,0.81398445,0.000079046,0.12677227,0.00020645765],"about_ca_topic_score_codex":0.000048112186,"about_ca_topic_score_gemma":0.000006478701,"teacher_disagreement_score":0.16666661,"about_ca_system_score_codex":0.0001240048,"about_ca_system_score_gemma":0.0001746192,"threshold_uncertainty_score":0.51976854},"labels":[],"label_agreement":null},{"id":"W1543052543","doi":"10.4049/jimmunol.0901140","title":"MyD88 Adaptor-Like Is Not Essential for TLR2 Signaling and Inhibits Signaling by TLR3","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Biotechnology and Biological Sciences Research Council","keywords":"TLR2; TLR3; TLR4; Signal transducing adaptor protein; Toll-like receptor; Cell biology; Signal transduction; Ligand (biochemistry); Receptor; Chemistry; Innate immune system; Biology; Biochemistry","score_opus":0.00941090005275775,"score_gpt":0.23400659470039456,"score_spread":0.22459569464763682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1543052543","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9789482,0.01628732,0.0011383395,0.0028958623,0.0004734746,0.00020006803,0.0000065046547,0.000010376558,0.000039856273],"genre_scores_gemma":[0.9978089,0.0009203929,0.00010340371,0.0006843743,0.00006214109,0.0000024577814,0.00000938478,0.000011904724,0.00039704202],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983826,0.00040338413,0.00069814833,0.00012062773,0.00004580442,0.0003493879],"domain_scores_gemma":[0.99874604,0.00046079568,0.00047192254,0.00015656662,0.00015169596,0.000012995319],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012338448,0.00016991101,0.0003895512,0.0002006781,0.00020656487,0.00001708936,0.00027282303,0.00026821176,0.000080769125],"category_scores_gemma":[0.0001228335,0.00012287963,0.00010979966,0.000107060514,0.0001725122,0.00019649077,0.00003869557,0.0004888213,0.000018329865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031915775,0.00005603653,0.000020061918,0.0000055819473,0.00016685652,0.000002229976,0.0013081682,0.000015877094,0.9847763,0.00017778872,0.0018652016,0.008414319],"study_design_scores_gemma":[0.0027704623,0.0009809372,0.0005243978,0.00007920803,0.000085430554,0.0005041064,0.0006030612,0.0000148253985,0.98295754,0.0004975079,0.010842843,0.0001396747],"about_ca_topic_score_codex":0.000017881686,"about_ca_topic_score_gemma":0.0000015575176,"teacher_disagreement_score":0.0188607,"about_ca_system_score_codex":0.00003923465,"about_ca_system_score_gemma":0.0000782884,"threshold_uncertainty_score":0.5010886},"labels":[],"label_agreement":null},{"id":"W1544979073","doi":"10.25011/cim.v31i3.3469","title":"The significance of Toll-like receptor 4 (TLR4) expression in patients with chronic hepatitis B","year":2008,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"TLR4; Toll; Toll-like receptor; Chronic hepatitis; Medicine; Receptor; Expression (computer science); Internal medicine; Immunology; Innate immune system; Virus; Computer science","score_opus":0.04360572244852938,"score_gpt":0.27141934116505884,"score_spread":0.22781361871652944,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1544979073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952975,0.0020668616,0.000020401294,0.001804006,0.00037065605,0.000301874,0.0000029412754,0.000009603034,0.00012617263],"genre_scores_gemma":[0.9974319,0.0014442421,0.000043638036,0.00016580622,0.000048155867,0.000023437731,0.000048718928,0.0000062575677,0.00078784616],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99859816,0.00043231258,0.0005651429,0.0001890562,0.000056507706,0.00015881835],"domain_scores_gemma":[0.99897546,0.00049252016,0.00022632458,0.00017383481,0.00010214285,0.00002974214],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00044687197,0.00011204539,0.00032222163,0.000039115635,0.00016072385,0.0000013673169,0.00010763516,0.000116352974,0.000085128835],"category_scores_gemma":[0.0007175449,0.000056658133,0.00002512558,0.00012190569,0.008855759,0.00009229027,0.000038170638,0.00027740517,0.000019934667],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007707621,0.000099983,0.9383041,0.000022492142,0.000047654787,0.0000017428649,0.00079037994,8.9711244e-7,0.046077274,0.00043449248,0.006592971,0.006857218],"study_design_scores_gemma":[0.0033725991,0.0020781283,0.93842727,0.0003127046,0.000010533932,0.0000017533278,0.00005450762,0.0000029661362,0.033839237,0.00035530305,0.021460611,0.00008440083],"about_ca_topic_score_codex":0.00009941371,"about_ca_topic_score_gemma":0.00004768938,"teacher_disagreement_score":0.01486764,"about_ca_system_score_codex":0.000016429989,"about_ca_system_score_gemma":0.0000939468,"threshold_uncertainty_score":0.9938416},"labels":[],"label_agreement":null},{"id":"W15494169","doi":"10.4049/jimmunol.190.supp.187.9","title":"SIGIRR limits colitic and epithelial homeostatic responses, but promotes microbiota dependent colonization resistance to enteric bacterial pathogens (P3067)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Citrobacter rodentium; Colonisation resistance; Biology; Pathogen; Microbiology; Colonization; Immune system; Gastrointestinal tract; Host (biology); Immunology; Ecology","score_opus":0.007885013728741848,"score_gpt":0.21234939140251102,"score_spread":0.20446437767376918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W15494169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904633,0.004606295,0.00029604594,0.002960054,0.0010142652,0.00057497906,0.000035433535,0.000018012328,0.000031569998],"genre_scores_gemma":[0.9955762,0.00080741127,0.00019584874,0.00022171898,0.000065647124,0.000018349187,0.000019236968,0.000023079108,0.0030725144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969998,0.0016015165,0.0007611461,0.00015790088,0.000060141323,0.00041946556],"domain_scores_gemma":[0.99803925,0.0006787607,0.00055556785,0.00029795564,0.00039543802,0.00003303864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092705974,0.00021500482,0.00041473974,0.00026761464,0.00028062548,0.000052466858,0.00037939436,0.0002232989,0.00028736398],"category_scores_gemma":[0.0007287641,0.00015342391,0.000083427425,0.00016069261,0.00028061558,0.00022760144,0.00011529967,0.0003627511,0.0003591674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004461844,0.00007279107,0.00009438996,0.000016675003,0.00027740767,0.00001094767,0.0015920298,0.0000018317578,0.9907777,0.00008182939,0.00068659114,0.0019259907],"study_design_scores_gemma":[0.003033888,0.0021417902,0.06930419,0.000177495,0.00021720235,0.0024887791,0.0011060371,0.0000019902493,0.90826035,0.00034172964,0.012620247,0.00030629002],"about_ca_topic_score_codex":0.000058118963,"about_ca_topic_score_gemma":0.000031979387,"teacher_disagreement_score":0.08251731,"about_ca_system_score_codex":0.00010222909,"about_ca_system_score_gemma":0.00018552394,"threshold_uncertainty_score":0.62564456},"labels":[],"label_agreement":null},{"id":"W1551045512","doi":"10.1111/j.1600-065x.2011.01045.x","title":"The machinery of Nod‐like receptors: refining the paths to immunity and cell death","year":2011,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Innate immune system; Effector; Pattern recognition receptor; Receptor; Immune system; Immunity; Nod; Cell biology; Inflammation; Acquired immune system; Signal transduction; Immunology; Autophagy; Programmed cell death; Inflammasome; Neuroscience; Genetics; Gene","score_opus":0.07817191724807063,"score_gpt":0.31546702311295316,"score_spread":0.23729510586488253,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1551045512","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009163518,0.99463475,0.000023760636,0.000064553366,0.0011236506,0.0013286015,0.000011289881,0.000043316682,0.002678467],"genre_scores_gemma":[0.00002465037,0.9938815,0.00009887931,0.00010365593,0.00003170085,0.00043997433,0.000107294676,0.000036936908,0.0052753845],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9922194,0.004831948,0.0018619891,0.00046003828,0.00005664308,0.00056999637],"domain_scores_gemma":[0.99507385,0.00205542,0.0012756118,0.0014717734,0.00009437308,0.000028981929],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0038055677,0.00065018446,0.002349585,0.0001208409,0.00073403073,0.00004678185,0.0014221731,0.00080683257,0.00030853404],"category_scores_gemma":[0.0015843344,0.0002720665,0.0007804169,0.0003632207,0.00050358736,0.00007648607,0.00084034837,0.0016174143,0.0016083857],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008272938,0.00004821786,0.0000013993789,0.0009036527,0.00015893742,9.5223237e-7,0.0001883579,1.1260357e-8,0.00068399066,0.00075407745,0.00094353745,0.9962341],"study_design_scores_gemma":[0.00016181587,0.0003370666,0.0000340262,0.0037905786,0.00039352762,0.000074036485,0.00004580689,4.232181e-8,0.00016197374,0.00005814266,0.9946227,0.00032027732],"about_ca_topic_score_codex":0.000095992975,"about_ca_topic_score_gemma":0.0000047227604,"teacher_disagreement_score":0.99591386,"about_ca_system_score_codex":0.00006538538,"about_ca_system_score_gemma":0.000121741774,"threshold_uncertainty_score":0.9999732},"labels":[],"label_agreement":null},{"id":"W1554415868","doi":"10.1016/s1567-7443(05)80006-7","title":"Host Defence: An Interaction of Neuroendocrine-, Metabolic- and Immune Mechanisms in the Interest of Survival","year":2005,"lang":"en","type":"book-chapter","venue":"Neuroimmune biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Immune system; Innate immune system; Biology; Immunology; Cell biology; Receptor; Genetics","score_opus":0.030404195680994468,"score_gpt":0.27184273210074483,"score_spread":0.24143853641975035,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1554415868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9428851,0.021835728,0.00008668402,0.00073377095,0.0033701297,0.001147163,0.00011764006,0.0000655601,0.029758198],"genre_scores_gemma":[0.9887057,0.003719139,0.000019291825,0.00009064074,0.00004427843,0.000016157466,0.00031267642,0.000044403372,0.007047729],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973463,0.00074139,0.0011265414,0.00042790218,0.000047703128,0.0003102007],"domain_scores_gemma":[0.99765706,0.00045442997,0.0010372411,0.0007309973,0.000108183536,0.000012083366],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00049634144,0.0004046499,0.0009907108,0.00047084785,0.00007021794,0.000009526278,0.0005928644,0.00039222065,0.000319088],"category_scores_gemma":[0.00015436234,0.0003122346,0.00019472472,0.00007053647,0.0005003631,0.00014033783,0.0002283169,0.0009153191,0.000044853394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007084858,0.0000783014,0.00004550114,0.000030478535,0.000105139945,0.0000089530295,0.0002782883,0.0000011026898,0.7898041,0.1990925,0.000014242749,0.009832911],"study_design_scores_gemma":[0.0040587154,0.0045164553,0.03923349,0.00037261515,0.00046645632,0.0015088508,0.0007326666,0.000012490652,0.65125966,0.007817073,0.28898627,0.001035255],"about_ca_topic_score_codex":0.00018627133,"about_ca_topic_score_gemma":0.00009597986,"teacher_disagreement_score":0.28897205,"about_ca_system_score_codex":0.0000146358425,"about_ca_system_score_gemma":0.000057166297,"threshold_uncertainty_score":0.99993294},"labels":[],"label_agreement":null},{"id":"W1555182068","doi":"10.1016/s1567-7443(01)80026-0","title":"Fever and antipyresis","year":2001,"lang":"en","type":"book-chapter","venue":"Neuroimmune biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council","keywords":"Circumventricular organs; Immunology; Immune system; Secretion; Cytokine; Lipopolysaccharide; Hypothalamus; Biology; Prostaglandin; Tumor necrosis factor alpha; Medicine; Neuroscience; Cell biology; Endocrinology","score_opus":0.015540651458358359,"score_gpt":0.22373083705966765,"score_spread":0.20819018560130928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1555182068","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.035443757,0.060656704,0.000035565503,0.0010687595,0.0032421341,0.00066358777,0.00006545961,0.00031684426,0.8985072],"genre_scores_gemma":[0.07223232,0.013092935,0.000012839282,0.0004735947,0.00011248216,0.000012727249,0.0005820394,0.00009258004,0.9133885],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983608,0.00014619973,0.0005120189,0.0005500728,0.000024846973,0.00040602108],"domain_scores_gemma":[0.9988364,0.00021859664,0.00029339912,0.0005601304,0.00007202199,0.000019445652],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00017588747,0.00045333174,0.000666262,0.00029206806,0.00020313566,0.000016096028,0.00026849672,0.0013059044,0.0031557938],"category_scores_gemma":[0.00006618332,0.0004152041,0.00016710939,0.000029731385,0.00052243046,0.000064119544,0.0002442076,0.0007063811,0.002556821],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071736524,0.000046491736,0.00046216123,0.000060097365,0.0007150579,0.00009380898,0.00013023296,2.9658568e-7,0.7205159,0.18052582,0.01816282,0.07856995],"study_design_scores_gemma":[0.0007153311,0.00024836094,0.0029048433,0.000051078903,0.00009381219,0.0004250118,0.000004414976,3.9381393e-7,0.004598924,0.003070582,0.98748857,0.00039867012],"about_ca_topic_score_codex":0.00003654392,"about_ca_topic_score_gemma":0.0000047764097,"teacher_disagreement_score":0.9693258,"about_ca_system_score_codex":0.000026878397,"about_ca_system_score_gemma":0.00005984226,"threshold_uncertainty_score":0.9999906},"labels":[],"label_agreement":null},{"id":"W1557836533","doi":"10.4049/jimmunol.181.3.2145","title":"Points of Control Exerted along the Macrophage-Endothelial Cell-Polymorphonuclear Neutrophil Axis by PECAM-1 in the Innate Immune Response of Acute Colonic Inflammation","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"","keywords":"Innate immune system; Cell biology; Chemokine; Inflammation; Immune system; Immunology; CXC chemokine receptors; Endothelial stem cell; Biology; Chemotaxis; Chemistry; Receptor; Chemokine receptor; In vitro; Biochemistry","score_opus":0.00561922537965235,"score_gpt":0.20606678572281814,"score_spread":0.2004475603431658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1557836533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98129153,0.013603245,0.00006509562,0.0040729265,0.00045264966,0.00043539918,0.00003006921,0.000007130308,0.000041980005],"genre_scores_gemma":[0.99495333,0.0044484795,0.000010987001,0.00014550466,0.000032233478,0.0000093527215,0.00001169266,0.000023465433,0.00036496113],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9920271,0.005762453,0.0015525836,0.000121786885,0.00014385751,0.00039220377],"domain_scores_gemma":[0.995546,0.0016725154,0.0018279735,0.0006262221,0.00031669487,0.000010622002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0040822006,0.00024402712,0.0006494757,0.00030265076,0.0003311604,0.000008308946,0.0012122802,0.0003033147,0.00017901689],"category_scores_gemma":[0.00035466778,0.00013017972,0.00026143793,0.0003801352,0.0011964368,0.00017056371,0.00011187672,0.0009678927,0.00007152033],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.036377273,0.000138436,0.00014864941,0.00000816487,0.0006543845,0.000033113818,0.0062762154,0.00005057582,0.95484537,0.000062803025,0.00082530477,0.0005797054],"study_design_scores_gemma":[0.007880671,0.0020852392,0.09079862,0.000058928334,0.00027482395,0.0022790148,0.0016821885,0.000013864248,0.89224297,0.000060510276,0.0024818769,0.0001412786],"about_ca_topic_score_codex":0.00028066104,"about_ca_topic_score_gemma":0.000007988312,"teacher_disagreement_score":0.09064996,"about_ca_system_score_codex":0.0000630326,"about_ca_system_score_gemma":0.00025372687,"threshold_uncertainty_score":0.53085744},"labels":[],"label_agreement":null},{"id":"W1560312836","doi":"10.1111/j.1600-065x.2011.01063.x","title":"T‐cell intrinsic effects of GITR and 4‐1BB during viral infection and cancer immunotherapy","year":2011,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Immune system; Immunology; Immunotherapy; Biology; T cell; Antibody; CD137; Cancer immunotherapy; Effector; Cancer research; Cytotoxic T cell; CD8; In vitro","score_opus":0.02807818161497566,"score_gpt":0.2978473005936034,"score_spread":0.26976911897862776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1560312836","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0111540565,0.98631114,0.000008611945,0.0000049472883,0.00057085184,0.0017525031,0.000005098463,0.00007917846,0.00011358561],"genre_scores_gemma":[0.0002744776,0.9985007,0.000025829526,0.000017316279,0.000033321554,0.00048817185,0.000039165552,0.000050820065,0.00057019317],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99639934,0.0014220527,0.0012450331,0.0005033015,0.00003231395,0.00039796776],"domain_scores_gemma":[0.99804246,0.00035835517,0.0010518376,0.0004750117,0.00005055566,0.00002175841],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000490416,0.0006124823,0.0027693966,0.00026684822,0.00014674349,0.000021929989,0.00023090356,0.0009894896,0.00017711853],"category_scores_gemma":[0.0002582228,0.00040575414,0.0004781041,0.00021615763,0.00041733147,0.00015480694,0.00024186415,0.00082974345,0.00015366149],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010394075,0.00007476912,0.000011949957,0.014071955,0.00027301483,0.0000028077877,0.00010919297,4.2305666e-9,0.011685914,0.00012811436,0.000029443077,0.9735089],"study_design_scores_gemma":[0.00080027163,0.00037351006,0.000878238,0.009815474,0.0004956929,0.0001091055,0.0000024456708,1.8211955e-8,0.0050372225,0.00003868038,0.98204994,0.00039936966],"about_ca_topic_score_codex":0.00012878347,"about_ca_topic_score_gemma":0.0000015140243,"teacher_disagreement_score":0.98202056,"about_ca_system_score_codex":0.00007557543,"about_ca_system_score_gemma":0.000067971814,"threshold_uncertainty_score":0.9998394},"labels":[],"label_agreement":null},{"id":"W1560497272","doi":"10.1046/j.1471-4159.2001.00080.x","title":"Anti‐inflammatory effects of prostaglandin E<sub>2</sub> in the central nervous system in response to brain injury and circulating lipopolysaccharide","year":2001,"lang":"en","type":"article","venue":"Journal of Neurochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Medical Research Council; Canadian Institutes of Health Research; Genentech; Medical Research Council Canada","keywords":"Lipopolysaccharide; Tumor necrosis factor alpha; Prostaglandin E2; Cyclooxygenase; Prostaglandin; Inflammation; Microglia; Prostaglandin E; Prostaglandin D2; Biology; Endocrinology; Central nervous system; Parenchyma; Proinflammatory cytokine; Immunology; Medicine; Internal medicine; Pathology; Biochemistry","score_opus":0.004755928587812112,"score_gpt":0.21587934384206728,"score_spread":0.21112341525425515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1560497272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99864626,0.0005484226,0.0000131986035,0.0003898934,0.00017804271,0.0001986452,0.0000013658895,0.0000069947578,0.000017170734],"genre_scores_gemma":[0.99977106,0.0000534441,0.0000044175035,0.00009671975,0.00004390897,0.0000052220976,0.0000015224754,0.000010543696,0.000013186472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99829894,0.00056755124,0.0006559798,0.0001289701,0.00007969444,0.00026885993],"domain_scores_gemma":[0.9987029,0.00066449057,0.00038124406,0.0001694181,0.000055446624,0.00002654413],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010903883,0.000135799,0.00031359942,0.0002057273,0.00004951335,0.000016506001,0.00019807916,0.00015518827,0.0000019920426],"category_scores_gemma":[0.00087568065,0.00010636026,0.0000701464,0.00016213478,0.000053108648,0.000107309446,0.000043961776,0.00043226266,0.0000029049309],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024775125,0.000048205027,0.012562199,0.00020727301,0.000019624324,0.0004087268,0.0011909747,0.000026413752,0.98134685,0.00000604059,0.000078278994,0.001627894],"study_design_scores_gemma":[0.0008799425,0.0001618683,0.27866346,0.0004135783,0.000011543367,0.0016770842,0.00047262709,0.0000064088044,0.71750635,0.000003614855,0.00012963814,0.00007389532],"about_ca_topic_score_codex":0.0000071927147,"about_ca_topic_score_gemma":0.0000019256008,"teacher_disagreement_score":0.26610127,"about_ca_system_score_codex":0.0000671084,"about_ca_system_score_gemma":0.000103687984,"threshold_uncertainty_score":0.43372455},"labels":[],"label_agreement":null},{"id":"W1561649423","doi":"10.4049/jimmunol.180.6.3797","title":"Attenuating Regulatory T Cell Induction by TLR Agonists through Inhibition of p38 MAPK Signaling in Dendritic Cells Enhances Their Efficacy as Vaccine Adjuvants and Cancer Immunotherapeutics","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Science Foundation Ireland","keywords":"Dendritic cell; MAPK/ERK pathway; p38 mitogen-activated protein kinases; Signal transduction; Cell biology; Cancer research; Immunology; Biology; Immune system","score_opus":0.01454543343631908,"score_gpt":0.24608068358361354,"score_spread":0.23153525014729445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1561649423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9320542,0.0667724,0.00007214535,0.00028448558,0.0005996833,0.00015702465,0.000004190449,0.000008485851,0.000047336987],"genre_scores_gemma":[0.98000884,0.019623434,0.000036691024,0.00009277358,0.000042548512,0.0000036209885,0.0000089848445,0.000018673229,0.0001644483],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978449,0.0007941408,0.0008897031,0.00012575099,0.00006373361,0.0002817923],"domain_scores_gemma":[0.9982124,0.00043992823,0.0009600323,0.00019647634,0.00018240097,0.000008745515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073790364,0.0001926729,0.00046756453,0.00017254522,0.00023151982,0.000006229486,0.00019763967,0.00027299137,0.00012162385],"category_scores_gemma":[0.0000519767,0.00014006339,0.00008109561,0.00017735986,0.00032773556,0.00027806606,0.000054801825,0.000606476,0.00001438649],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013978446,0.00012523837,0.00017604275,0.000020464657,0.00019500208,0.0000048260626,0.006070127,0.000066152665,0.98621655,0.00001650402,0.000107544394,0.005603728],"study_design_scores_gemma":[0.0026969428,0.000541159,0.006737983,0.0001917356,0.00006372232,0.0006099207,0.0022371053,0.0000027117628,0.9859033,0.0001418188,0.00074217014,0.00013142581],"about_ca_topic_score_codex":0.00023696158,"about_ca_topic_score_gemma":0.000008806371,"teacher_disagreement_score":0.04795458,"about_ca_system_score_codex":0.00007929759,"about_ca_system_score_gemma":0.00013579709,"threshold_uncertainty_score":0.5711619},"labels":[],"label_agreement":null},{"id":"W1562339034","doi":"10.4049/jimmunol.172.1.608","title":"Intercellular Adhesion Molecule-1 Mediates Cellular Cross-Talk between Parenchymal and Immune Cells after Lipopolysaccharide Neutralization","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; St. Michael's Hospital","funders":"Canadian Institutes of Health Research","keywords":"A549 cell; Lipopolysaccharide; Immune system; Cell biology; Biology; Tumor necrosis factor alpha; Molecular biology; Immunology; Cell culture","score_opus":0.007441874056179861,"score_gpt":0.22451293108357248,"score_spread":0.21707105702739263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1562339034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96311516,0.033275135,0.0020399918,0.0005044684,0.00084907195,0.00016345677,0.0000050824383,0.000022185952,0.00002543079],"genre_scores_gemma":[0.99683744,0.0027373994,0.000048985403,0.000056577985,0.00009375956,0.000004860101,0.0000318235,0.000025528701,0.0001636019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99770606,0.0007258051,0.0009486548,0.00015648932,0.000075355194,0.00038763223],"domain_scores_gemma":[0.998514,0.00023622811,0.0006695127,0.0003269345,0.00022714825,0.000026186815],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012139805,0.0002558487,0.00046560913,0.00028018074,0.00023076261,0.000040402847,0.0004459437,0.0003791067,0.00017191964],"category_scores_gemma":[0.000115185525,0.00017659063,0.00016304546,0.00014274186,0.0005455688,0.00036239228,0.00016990535,0.00065931096,0.00013617236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090797443,0.00004954419,0.0006575966,0.000015940648,0.00031556346,0.000039203038,0.0018675685,0.000053661195,0.9946785,0.00014990685,0.000011678644,0.0012528619],"study_design_scores_gemma":[0.0019321243,0.000795897,0.020363843,0.00013831748,0.00018192061,0.0005517904,0.00037302508,0.0000014575874,0.9742864,0.0007469713,0.00045127407,0.00017700321],"about_ca_topic_score_codex":0.00011977595,"about_ca_topic_score_gemma":0.000004145109,"teacher_disagreement_score":0.033722285,"about_ca_system_score_codex":0.00006998619,"about_ca_system_score_gemma":0.00009077093,"threshold_uncertainty_score":0.7201157},"labels":[],"label_agreement":null},{"id":"W1566056195","doi":"10.4049/jimmunol.0903429","title":"IFN Regulatory Factor 3 Contributes to the Host Response during <i>Pseudomonas aeruginosa</i> Lung Infection in Mice","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Killam Trusts","keywords":"IRF3; Chemokine; Pseudomonas aeruginosa; Biology; Immunology; Immune system; Microbiology; Innate immune system","score_opus":0.004648654373541552,"score_gpt":0.22103771612275477,"score_spread":0.2163890617492132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1566056195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866993,0.0042192084,0.00007883238,0.0061491644,0.002496929,0.00029071514,0.0000039172646,0.000019132223,0.0000428288],"genre_scores_gemma":[0.9986268,0.00041660696,0.0000098024775,0.00023592985,0.00007469575,0.000008627825,0.0000022917764,0.000015710997,0.0006094935],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99702185,0.0017227702,0.00070120656,0.00011496786,0.000056258927,0.00038291395],"domain_scores_gemma":[0.99774086,0.0011457594,0.0004704389,0.00040461696,0.00022331123,0.000014986833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025938586,0.00018139936,0.0003369542,0.0003941391,0.00034840446,0.000021134121,0.0005292838,0.00032238784,0.00012524286],"category_scores_gemma":[0.001130432,0.00010768966,0.00012260537,0.00030186502,0.00029123676,0.00019680487,0.00014039024,0.0014096692,0.00017675139],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010456248,0.000048904007,0.0028168415,0.000004435163,0.0002177644,0.0000074788063,0.0014959045,0.00002505937,0.983559,0.00013989539,0.000550767,0.00067766843],"study_design_scores_gemma":[0.0011969368,0.00016152576,0.4926066,0.000033014203,0.0000310783,0.0007650102,0.00017605847,0.0000010106785,0.49051034,0.000026072881,0.014416772,0.00007555591],"about_ca_topic_score_codex":0.00016501799,"about_ca_topic_score_gemma":0.00024813114,"teacher_disagreement_score":0.49304867,"about_ca_system_score_codex":0.00011474994,"about_ca_system_score_gemma":0.00017035201,"threshold_uncertainty_score":0.6124389},"labels":[],"label_agreement":null},{"id":"W1569732092","doi":"","title":"Identification of lipopolysaccharide-binding proteins in porcine milk.","year":2006,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Lactoferrin; Casein; Lipopolysaccharide; Pepsin; Lipopolysaccharide binding protein; Lactation; Digestion (alchemy); Beta-lactoglobulin; Chemistry; Antibody; Acute-phase protein; In vitro; Biochemistry; Biology; CD14; Whey protein; Chromatography; Immunology; Receptor; Enzyme; Inflammation","score_opus":0.009376256359898609,"score_gpt":0.20212468603720388,"score_spread":0.19274842967730527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1569732092","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99748874,0.0006583928,0.00010704197,0.00023442142,0.00022029926,0.0005990461,0.0000036315616,0.000025722527,0.00066271395],"genre_scores_gemma":[0.99464136,0.00001345526,0.000007014561,0.0000066653356,0.000019476432,0.0004938526,0.00005720171,0.0000065081167,0.0047544525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991316,0.0000879966,0.00042566375,0.00012037254,0.000025717292,0.00020863551],"domain_scores_gemma":[0.99959385,0.000032660493,0.00017934512,0.00015548288,0.000034081306,0.0000045733073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005108514,0.0000678781,0.0001336802,0.00021750352,0.00003680935,0.0000063355465,0.000094344025,0.00010589174,0.000035320358],"category_scores_gemma":[0.00009021096,0.00006511541,0.000037036716,0.00013404018,0.000045758352,0.00012252513,0.000020163654,0.000089520836,0.00007485318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000103072,0.00006273601,0.00606697,0.000014758963,0.000012575687,9.352893e-7,0.000056645782,0.0000065713525,0.9762209,0.00146669,0.00019420347,0.015793964],"study_design_scores_gemma":[0.00043380633,0.00000678752,0.28219247,0.0000060415923,0.000006058294,0.0000044687663,0.000024934008,0.0000020513103,0.7162786,0.0001926611,0.00080350606,0.00004862205],"about_ca_topic_score_codex":0.00030188254,"about_ca_topic_score_gemma":0.000039923023,"teacher_disagreement_score":0.2761255,"about_ca_system_score_codex":0.000038505903,"about_ca_system_score_gemma":0.000014624334,"threshold_uncertainty_score":0.26553294},"labels":[],"label_agreement":null},{"id":"W1572664742","doi":"10.1038/nri3834","title":"Regulation of tumour necrosis factor signalling: live or let die","year":2015,"lang":"en","type":"review","venue":"Nature reviews. Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1000,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"Fonds National de la Recherche Luxembourg","keywords":"Tumor necrosis factor alpha; Immunology; Cytokine; Necrosis; Cancer research; Rheumatoid arthritis; Inflammation; Medicine; Receptor; Signalling; Apoptosis; Biology; Inflammatory bowel disease; Effector; Disease; Cell biology; Internal medicine","score_opus":0.054555205493720824,"score_gpt":0.3346137848525058,"score_spread":0.280058579358785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1572664742","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004996302,0.99489313,0.000030985837,0.000056439665,0.002117178,0.0022766413,0.00011976804,0.000099616154,0.0003563],"genre_scores_gemma":[0.0001100585,0.99104077,0.0001303298,0.00004885542,0.0001392154,0.00024459095,0.0021252723,0.000102949496,0.0060579376],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926728,0.0030962434,0.0026103652,0.0007897958,0.000119973614,0.00071082794],"domain_scores_gemma":[0.9946593,0.00076726946,0.0029500597,0.0010752969,0.00050931453,0.000038783346],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.001415298,0.0010199529,0.0056107743,0.0006595021,0.00017075938,0.000024938365,0.001051675,0.0049910215,0.0017300514],"category_scores_gemma":[0.0015546153,0.00068275013,0.0013010717,0.00058508344,0.00039054142,0.00022218742,0.00030417964,0.0030564943,0.0033323772],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032505565,0.00011036937,4.78748e-7,0.0073548295,0.0011008839,0.000008441784,0.0002602111,1.6036772e-7,0.011856937,0.00026128782,0.0060626823,0.97265863],"study_design_scores_gemma":[0.00064033526,0.00044534105,0.000019729254,0.011404967,0.0010138361,0.00026740157,0.000024038314,2.2887649e-7,0.0019176592,0.00006598186,0.9835708,0.00062967034],"about_ca_topic_score_codex":0.00003253415,"about_ca_topic_score_gemma":0.000011351009,"teacher_disagreement_score":0.9775081,"about_ca_system_score_codex":0.00031974382,"about_ca_system_score_gemma":0.0009177177,"threshold_uncertainty_score":0.9995624},"labels":[],"label_agreement":null},{"id":"W1574387337","doi":"10.1523/jneurosci.23-13-05536.2003","title":"Glucocorticoids Play a Fundamental Role in Protecting the Brain during Innate Immune Response","year":2003,"lang":"en","type":"article","venue":"Journal of Neuroscience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":189,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Proinflammatory cytokine; Tumor necrosis factor alpha; Lipopolysaccharide; Neurodegeneration; Immune system; Immunology; Biology; Cytokine; Inflammation; Neuroscience; Medicine; Internal medicine; Disease","score_opus":0.010764949524414173,"score_gpt":0.24571359885680158,"score_spread":0.2349486493323874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1574387337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975647,0.00063955295,0.00003416021,0.00097474555,0.0005322056,0.0001627304,3.6281799e-7,0.0000069297307,0.000084645755],"genre_scores_gemma":[0.999237,0.000024362525,0.000015184789,0.00016338295,0.000009366706,0.000005366469,8.881219e-8,0.0000064300907,0.00053883943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972916,0.0017095057,0.00052171276,0.00012056282,0.0000795782,0.00027698794],"domain_scores_gemma":[0.99899787,0.00040468125,0.0003824002,0.0001549713,0.000045980567,0.000014104192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003458167,0.0000951652,0.00015543378,0.00021523288,0.00040448984,0.000041661115,0.00029105705,0.000059549555,0.000019738543],"category_scores_gemma":[0.0038733156,0.00006423341,0.00007282419,0.0003794855,0.00017735548,0.00032322665,0.000048234942,0.00072616845,0.000015187215],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011294214,0.000044129527,0.00090594555,0.0000025952943,0.0000035144174,0.000041517993,0.0013519238,0.00007765931,0.9959562,0.000039881546,0.000009049122,0.00043820275],"study_design_scores_gemma":[0.0010758527,0.00032505114,0.29542887,0.00004564111,0.0000035742676,0.0020938606,0.00082824385,0.000011774656,0.6956724,0.000059072372,0.004383496,0.0000721487],"about_ca_topic_score_codex":0.000007699779,"about_ca_topic_score_gemma":0.0000016573225,"teacher_disagreement_score":0.30028376,"about_ca_system_score_codex":0.00006625725,"about_ca_system_score_gemma":0.00014932235,"threshold_uncertainty_score":0.46370003},"labels":[],"label_agreement":null},{"id":"W157512105","doi":"10.14670/hh-19.1201","title":"Toll-like receptor 4 in normal and inflamed lungs and other organs of pig, dog and cattle.","year":2004,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"TLR4; Pathology; Lung; Biology; Staining; Spleen; Epithelium; Receptor; Immunohistochemistry; Endothelium; Toll-like receptor; Inflammation; Immunology; Innate immune system; Medicine; Endocrinology; Internal medicine","score_opus":0.006900993912681934,"score_gpt":0.1923359263721171,"score_spread":0.18543493245943518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W157512105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99615985,0.0024818166,0.0000070510164,0.00046474717,0.00012171802,0.00029996014,0.0000062887416,0.000013720405,0.00044484384],"genre_scores_gemma":[0.9987588,0.00027515617,0.000023925286,0.00011858305,0.000010194464,0.00008355973,0.000009065601,0.000008359077,0.000712347],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99936014,0.000067949564,0.00020664243,0.00013933287,0.000017448532,0.00020846074],"domain_scores_gemma":[0.99974763,0.000051934807,0.00006748848,0.00009748574,0.000017536571,0.000017913364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026650183,0.00009019768,0.00017020575,0.00011005506,0.00004137453,0.000008759412,0.000043013297,0.0001444339,0.00003641413],"category_scores_gemma":[0.00007168477,0.00007987955,0.00001278957,0.00007368676,0.00018860506,0.00011270346,0.000047847487,0.000106421474,0.000008254902],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017146865,0.0001889957,0.26378915,0.0002041998,0.00028580517,0.0000069854045,0.010868226,0.0000065672084,0.58459145,0.0023016965,0.0008476165,0.1351946],"study_design_scores_gemma":[0.0027375163,0.00005187399,0.80653566,0.000020185847,0.00001717102,0.000054163113,0.00022671609,2.8705344e-7,0.17133206,0.00009543046,0.01880246,0.00012649495],"about_ca_topic_score_codex":0.00023924046,"about_ca_topic_score_gemma":0.0001043063,"teacher_disagreement_score":0.5427465,"about_ca_system_score_codex":0.000018555626,"about_ca_system_score_gemma":0.00002066497,"threshold_uncertainty_score":0.32573938},"labels":[],"label_agreement":null},{"id":"W1576945532","doi":"10.1111/j.1462-5822.2010.01488.x","title":"CD34 mediates intestinal inflammation in Salmonella-infected mice","year":2010,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Inflammation; Lamina propria; CD34; Immunology; Chemokine; Haematopoiesis; Proinflammatory cytokine; Stem cell; Microbiology; Cell biology; Epithelium","score_opus":0.005176194371862429,"score_gpt":0.20126566660354914,"score_spread":0.1960894722316867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1576945532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99557096,0.00085249706,0.0001784665,0.00036442067,0.0016986998,0.0003130553,0.000007144796,0.00012387519,0.0008908918],"genre_scores_gemma":[0.9975051,0.000036892372,0.00019453876,0.00006784706,0.000105483974,0.00003018493,0.0011648639,0.000024649189,0.00087043137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99811,0.0003888971,0.00058108865,0.00037794648,0.00001607631,0.0005259674],"domain_scores_gemma":[0.9989992,0.00031474573,0.00020792043,0.0003378387,0.00011741963,0.00002287868],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00058198074,0.00026068726,0.00034993212,0.0003665094,0.00011769776,0.000016958149,0.00031038988,0.0006794882,0.0011686983],"category_scores_gemma":[0.00044474343,0.00024631977,0.0000927949,0.00026138182,0.00032864144,0.000134816,0.000110742956,0.0008597344,0.002957586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017535232,0.000055572113,0.0031917037,0.000015442252,0.000034101486,0.00001732222,0.00036447312,0.000003850161,0.9927321,0.000555606,0.00048408555,0.0023703678],"study_design_scores_gemma":[0.0012019925,0.00009915751,0.0043943855,0.000021940967,0.000018406608,0.000303685,0.00007111811,0.000016942642,0.9478809,0.00016981193,0.04556012,0.00026153485],"about_ca_topic_score_codex":0.000108924396,"about_ca_topic_score_gemma":0.0002209315,"teacher_disagreement_score":0.045076035,"about_ca_system_score_codex":0.000041196887,"about_ca_system_score_gemma":0.00009935318,"threshold_uncertainty_score":0.9999989},"labels":[],"label_agreement":null},{"id":"W1580237032","doi":"10.25011/cim.v30i2.979","title":"Human newborn polymorphonuclear neutrophils exhibit decreased levels of MyD88 and attenuated p38 phosphorylation in response to lipopolysaccharide","year":2007,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Technical University of Nova Scotia; The Audio Recording Academy; Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research; IWK Health Centre; Johns Hopkins University","keywords":"Degranulation; Lipopolysaccharide; p38 mitogen-activated protein kinases; Immunology; Phosphorylation; Receptor; Granulocyte; Molecular biology; Biology; Chemistry; Endocrinology; Protein kinase A; Cell biology; Biochemistry","score_opus":0.08502292792916501,"score_gpt":0.33185011857045754,"score_spread":0.24682719064129255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1580237032","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99143225,0.0009437934,0.000091284805,0.006856672,0.00019089361,0.00032455852,0.000006446915,0.000024858664,0.00012926599],"genre_scores_gemma":[0.99799114,0.000043862616,0.00018931142,0.0011886787,0.000063258914,0.000004692303,0.000020363492,0.000014193101,0.00048448873],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99762255,0.0006174967,0.0010801781,0.00034323664,0.00006392915,0.00027259876],"domain_scores_gemma":[0.998577,0.0007075604,0.00025873946,0.000206786,0.00011898527,0.00013095481],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0032543219,0.0001871363,0.00055084843,0.00028744864,0.00010914641,0.000004734451,0.000102779624,0.00026027104,0.00017031944],"category_scores_gemma":[0.0031181634,0.00014847353,0.000041886593,0.0002645012,0.00363279,0.00012318003,0.00007880872,0.00035749466,0.000029632101],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022960482,0.000054063377,0.020634506,0.0000131476845,0.000040806397,0.000010291089,0.0011617346,4.9039943e-7,0.9617101,0.0014012137,0.00029597952,0.012381653],"study_design_scores_gemma":[0.0031047545,0.0013788085,0.73013973,0.00026924664,0.000032052158,0.000011658407,0.000433792,0.0000051339352,0.26081592,0.0017149281,0.0019633565,0.00013058963],"about_ca_topic_score_codex":0.000473056,"about_ca_topic_score_gemma":0.000066095934,"teacher_disagreement_score":0.70950526,"about_ca_system_score_codex":0.000021021016,"about_ca_system_score_gemma":0.000061957726,"threshold_uncertainty_score":0.99907875},"labels":[],"label_agreement":null},{"id":"W1580651257","doi":"10.18433/j3rp46","title":"Effects of Ketamine on Pulmonary Inflammatory Responses and Survival in Rats Exposed to Polymicrobial Sepsis","year":2007,"lang":"en","type":"article","venue":"Journal of Pharmacy & Pharmaceutical Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Sepsis; Medicine; Inflammatory response; Ketamine; Inflammation; Immunology; Pharmacology; Anesthesia","score_opus":0.03169933841822914,"score_gpt":0.34918467227235517,"score_spread":0.31748533385412603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1580651257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99417156,0.003447996,0.000043464865,0.00090982235,0.00089255796,0.00023205456,0.0000020203152,0.000009258364,0.0002912581],"genre_scores_gemma":[0.9988541,0.00046859807,0.00006964863,0.00040308348,0.00008592952,0.000001891866,6.395237e-7,0.000007760629,0.00010837622],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977684,0.0006174974,0.00080365245,0.00019890796,0.00017899624,0.00043253694],"domain_scores_gemma":[0.99765414,0.0017853432,0.00028716426,0.00007233361,0.00010087274,0.00010014738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003669723,0.00017678054,0.0003670463,0.00070131663,0.0001295988,0.000019660285,0.00032108702,0.000078982965,0.00010435702],"category_scores_gemma":[0.00050630356,0.0001370986,0.00009910053,0.00048527768,0.00046317553,0.0003088743,0.00008959931,0.00040508952,0.000024136347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076287542,0.00022332315,0.009436627,0.000049537193,0.000043555818,0.00013421488,0.00037819025,0.000012590428,0.93310857,0.00009509761,0.000097601696,0.048791938],"study_design_scores_gemma":[0.0023018632,0.00047636146,0.03939165,0.00012732366,0.00004167748,0.00014179606,0.00014162659,0.000020136724,0.9405335,0.000016983202,0.01666935,0.00013772747],"about_ca_topic_score_codex":0.000012031657,"about_ca_topic_score_gemma":0.0000033907288,"teacher_disagreement_score":0.04865421,"about_ca_system_score_codex":0.000056804238,"about_ca_system_score_gemma":0.00015807421,"threshold_uncertainty_score":0.55907184},"labels":[],"label_agreement":null},{"id":"W1581008394","doi":"10.1111/j.1600-0897.2010.00945.x","title":"Induction of Innate Immune Responses in the Female Genital Tract: Friend or Foe of HIV‐1 Infection?","year":2011,"lang":"en","type":"review","venue":"American Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Immunology; Biology; Microbicides for sexually transmitted diseases; Innate lymphoid cell; Immunity; Immune system; Interferon; Intrinsic immunity; Pattern recognition receptor; Virology; Medicine; Population","score_opus":0.037962723099401734,"score_gpt":0.3144288936768154,"score_spread":0.2764661705774137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1581008394","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25945938,0.7387885,0.0000251209,0.000075198615,0.0010151918,0.00048274457,0.000020586469,0.000008368154,0.0001249567],"genre_scores_gemma":[0.12354211,0.87572515,0.000084221094,0.000005665943,0.00010997829,0.000037435806,0.00003735854,0.00004231209,0.00041576513],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9916705,0.0046618674,0.0027152835,0.00044509032,0.00010335678,0.0004039029],"domain_scores_gemma":[0.9908108,0.0010026031,0.00649466,0.001005344,0.00067314977,0.000013437538],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.003159064,0.0004745517,0.0029225622,0.0016175311,0.00010704219,0.000008360614,0.000776024,0.0004582644,0.00018469595],"category_scores_gemma":[0.0020528182,0.000298011,0.0007489155,0.0013542733,0.0021641615,0.00035959168,0.00013348865,0.0017531292,0.00004425876],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057674996,0.0007738597,0.0002203557,0.0005837705,0.0021976994,0.000043187298,0.007114055,0.0000014058616,0.015055135,0.00031431176,0.00006631997,0.9678624],"study_design_scores_gemma":[0.0020004888,0.01072313,0.017124394,0.0039000867,0.0018558699,0.020200038,0.008527017,4.3807578e-8,0.031749777,0.00016081498,0.9030521,0.00070621993],"about_ca_topic_score_codex":0.00038942497,"about_ca_topic_score_gemma":0.0000068106233,"teacher_disagreement_score":0.9671562,"about_ca_system_score_codex":0.00014284297,"about_ca_system_score_gemma":0.0009052331,"threshold_uncertainty_score":0.9999472},"labels":[],"label_agreement":null},{"id":"W1581135407","doi":"10.1126/science.aaa4921","title":"Cytosolic detection of the bacterial metabolite HBP activates TIFA-dependent innate immunity","year":2015,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":158,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Immune system; Biology; Pathogen-associated molecular pattern; Immunity; Lipopolysaccharide; Acquired immune system; Bacteria; Cytosol; Pathogen; Microbiology; Cell biology; Receptor; Pattern recognition receptor; Immunology; Biochemistry; Enzyme","score_opus":0.017011147914446422,"score_gpt":0.24366222990597913,"score_spread":0.22665108199153272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1581135407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99696726,0.00034515472,0.000063650215,0.000085072046,0.001682856,0.00011569677,0.0000031083694,0.000020619893,0.0007165833],"genre_scores_gemma":[0.9994445,0.000016417538,0.000008950303,0.000020176101,0.000019414203,0.000005601384,0.000002978166,0.0000032960595,0.00047865772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991535,0.00024782447,0.00018252162,0.00013240014,0.000080214086,0.00020355705],"domain_scores_gemma":[0.99933094,0.00003708688,0.00014332398,0.0003185004,0.0001555785,0.000014593342],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011229984,0.000074143965,0.00011210406,0.00009901081,0.0002624322,0.000021331833,0.00044576512,0.00006988063,0.00003511205],"category_scores_gemma":[0.00045382348,0.00004832314,0.000040171348,0.00040801443,0.0005977322,0.0003572379,0.00019775832,0.00015364829,0.00009496554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013854925,0.000017197339,0.00015675351,0.0000018089795,0.0000090681615,7.205566e-8,0.00063333084,0.000004000345,0.9937433,0.00021280581,0.0000054884727,0.005077647],"study_design_scores_gemma":[0.0003649994,0.0000514044,0.035630386,0.000006640473,0.000008898483,0.000016024978,0.00019486432,0.00000608261,0.95595497,0.0001885982,0.0075213034,0.000055820823],"about_ca_topic_score_codex":0.0001571606,"about_ca_topic_score_gemma":0.000011858309,"teacher_disagreement_score":0.0377883,"about_ca_system_score_codex":0.000049436836,"about_ca_system_score_gemma":0.00024511354,"threshold_uncertainty_score":0.22023693},"labels":[],"label_agreement":null},{"id":"W1581197340","doi":"10.4049/jimmunol.177.11.8202","title":"<i>IRAK-4</i> Mutation (Q293X): Rapid Detection and Characterization of Defective Post-Transcriptional TLR/IL-1R Responses in Human Myeloid and Non-Myeloid Cells","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Child and Family Research Institute","funders":"Wellcome Trust","keywords":"Innate immune system; Biology; Mutation; Signal transduction; Myeloid; Cell biology; Proinflammatory cytokine; Immunology; Immune system; Genetics; Gene; Inflammation","score_opus":0.004424478117310265,"score_gpt":0.20015676402662236,"score_spread":0.1957322859093121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1581197340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956581,0.0025766755,0.0008641002,0.00026215316,0.00034751737,0.00022607921,0.000014979061,0.00000874104,0.000041627303],"genre_scores_gemma":[0.9987768,0.00092301646,0.00002429842,0.00004856893,0.000039928396,0.0000050067665,0.00004145424,0.000013360567,0.00012758288],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979475,0.0009477211,0.0007291441,0.00012037352,0.000054353404,0.000200866],"domain_scores_gemma":[0.9986048,0.00032099208,0.00066898164,0.00012695891,0.00026954344,0.000008728265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010316696,0.00016111236,0.00033602357,0.00046856314,0.00019884466,0.0000122933925,0.00012383806,0.00024599308,0.00003792512],"category_scores_gemma":[0.000058119407,0.00012705181,0.00006656251,0.00016849278,0.00038686008,0.0003260764,0.000034636425,0.00039003274,0.000006716151],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041662664,0.00008045111,0.00041442597,0.000017307673,0.000110511675,0.000004236204,0.0015177225,0.000012109946,0.9877489,0.00011847582,0.000004911247,0.0058046384],"study_design_scores_gemma":[0.001491077,0.00085894676,0.3497531,0.000041419953,0.000054847893,0.0005582639,0.0003492139,0.000005193972,0.64631027,0.00018467169,0.0003133536,0.00007962452],"about_ca_topic_score_codex":0.00022274896,"about_ca_topic_score_gemma":0.00007845042,"teacher_disagreement_score":0.34933868,"about_ca_system_score_codex":0.000053796022,"about_ca_system_score_gemma":0.00006669903,"threshold_uncertainty_score":0.5181022},"labels":[],"label_agreement":null},{"id":"W1582241183","doi":"10.4049/jimmunol.180.5.3478","title":"Lipoteichoic Acid-Induced Lung Inflammation Depends on TLR2 and the Concerted Action of TLR4 and the Platelet-Activating Factor Receptor","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipoteichoic acid; TLR2; TLR4; Platelet-activating factor receptor; Inflammation; In vivo; Receptor; CD14; Chemokine; Toll-like receptor; Immunology; Tumor necrosis factor alpha; Biology; Chemistry; Innate immune system; Biochemistry; Bacteria; Antagonist","score_opus":0.02113158570575062,"score_gpt":0.24818264910490162,"score_spread":0.227051063399151,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1582241183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99,0.006391065,0.00009721881,0.002572252,0.0005396837,0.00028715446,0.0000015368042,0.000011030511,0.00010005602],"genre_scores_gemma":[0.9950112,0.004685847,0.000010753686,0.00007528777,0.00007076417,0.0000058240507,0.0000042012834,0.000011415708,0.00012469896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99712026,0.0018550745,0.00066820165,0.000089635236,0.000071404145,0.000195415],"domain_scores_gemma":[0.9964972,0.001959809,0.0011136292,0.00023611831,0.00018428253,0.000008962218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001349632,0.00016482231,0.00043207122,0.00013549186,0.0005368441,0.000011938332,0.00025646033,0.00023469445,0.00006728003],"category_scores_gemma":[0.0007910228,0.00007601709,0.000092311,0.00012819056,0.00096342625,0.00022447882,0.000073068564,0.0007616662,0.000011677933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0137058655,0.000013599017,0.000034614495,0.0000075093367,0.0005160462,0.0000010748939,0.005675053,0.0000073055617,0.9451344,0.0006681975,0.000066025146,0.03417032],"study_design_scores_gemma":[0.009558639,0.0004691574,0.013385016,0.00006674805,0.00004724681,0.0011190439,0.0016125373,0.000049769576,0.97128385,0.00011642347,0.0021945315,0.00009702662],"about_ca_topic_score_codex":0.00011095555,"about_ca_topic_score_gemma":0.0000065626705,"teacher_disagreement_score":0.03407329,"about_ca_system_score_codex":0.00004529167,"about_ca_system_score_gemma":0.000079594436,"threshold_uncertainty_score":0.41290247},"labels":[],"label_agreement":null},{"id":"W1584655997","doi":"10.1186/ar1397","title":"Differential modulation of cysteinyl leukotriene receptor 1 and 2 expression by distinct Toll-like receptor agonists in monocyte-derived dendritic cells","year":2004,"lang":"en","type":"article","venue":"Arthritis Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Arthritis Network; School of Medicine, University of California, San Diego; Menzies Institute for Medical Research; National Cancer Institute; Arthritis Society; University of North Carolina at Chapel Hill; Genentech; National Institutes of Health; Biogen; Lupus Research Institute; Pfizer; Natural Sciences and Engineering Research Council of Canada; Dutch Arthritis Association; Oesterreichische Nationalbank; Deutsche Forschungsgemeinschaft; Nuffield Foundation; Physiotherapy Foundation of Canada; Canadian Institutes of Health Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Lupus Research Alliance; Wellcome Trust; Newcastle University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; Austrian Science Fund; Arthritis Foundation","keywords":"Materials science","score_opus":0.01806024016613376,"score_gpt":0.2753277802520518,"score_spread":0.257267540085918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1584655997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947022,0.0038714171,0.00028389116,0.00019127222,0.00032225964,0.00045987766,0.00004022286,0.000026864933,0.000101979014],"genre_scores_gemma":[0.99646467,0.002304269,0.000108387976,0.0000056565195,0.000025148585,0.00007053896,0.00033348356,0.000020585332,0.0006672502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978421,0.00068109867,0.00048451725,0.0003588522,0.00014984059,0.0004836045],"domain_scores_gemma":[0.9992195,0.0002317041,0.000090231384,0.00027111065,0.00014710634,0.000040352275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047194984,0.00015766852,0.00031432108,0.00027886132,0.00022044998,0.000036048794,0.00017031573,0.00027798157,0.0004743798],"category_scores_gemma":[0.00017729755,0.00015691255,0.000051860123,0.00021940931,0.00037408652,0.00023487196,0.00015499577,0.0003995958,0.00019283043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00066852645,0.00014452255,0.00030195396,0.00003484356,0.000016089267,0.0000047198564,0.0006522217,0.000009967524,0.98013234,0.0000944363,0.0008244473,0.017115941],"study_design_scores_gemma":[0.0036735146,0.00036299124,0.0034566957,0.00033645282,0.0000023106193,0.000012548955,0.00024733174,0.000015246146,0.987737,0.00016076268,0.003841688,0.00015343243],"about_ca_topic_score_codex":0.00039932708,"about_ca_topic_score_gemma":0.00009745797,"teacher_disagreement_score":0.016962508,"about_ca_system_score_codex":0.000120559074,"about_ca_system_score_gemma":0.00009541472,"threshold_uncertainty_score":0.6398708},"labels":[],"label_agreement":null},{"id":"W1587826844","doi":"10.4049/jimmunol.176.2.1185","title":"Abrupt Expression of TLR4 in TLR4-Deficient Macrophages Imposes a Selective Disadvantage: Genetic Evidence for TLR4-Dependent Responses to Endogenous, Nonmicrobial Stimuli","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"TLR4; Biology; Transfection; Cell culture; In vitro; Endogeny; Cell biology; Gene; Molecular biology; Signal transduction; Genetics; Biochemistry","score_opus":0.026654152977937537,"score_gpt":0.29474790529549905,"score_spread":0.2680937523175615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1587826844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96788836,0.027843747,0.0023125708,0.00046986452,0.00066458696,0.0007484085,0.000030619547,0.00001440095,0.000027471662],"genre_scores_gemma":[0.9975947,0.001211001,0.00050643383,0.000063647945,0.00006878761,0.000025742485,0.0000085589945,0.000029059036,0.0004920473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963773,0.0014184604,0.0012957152,0.00023530418,0.000105595806,0.0005676173],"domain_scores_gemma":[0.99612653,0.0021452056,0.000899949,0.00040670982,0.00040230624,0.000019312653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015396508,0.0002849215,0.0006467473,0.0005499249,0.0002455791,0.000016844653,0.0007061737,0.00026737584,0.000079805955],"category_scores_gemma":[0.00085238926,0.00020150834,0.00020366786,0.00028560916,0.0003215256,0.00019803253,0.00019767566,0.0004948588,0.00004276333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022940142,0.00028153515,0.0010651845,0.000029969113,0.00012489155,0.000025000661,0.0020349293,0.001121439,0.9699151,0.00004083427,0.00042415562,0.001996817],"study_design_scores_gemma":[0.0026208768,0.0023920303,0.043707125,0.0002961926,0.00011565971,0.001491693,0.0007248739,0.000003756513,0.94744617,0.0001474252,0.00086031953,0.00019389192],"about_ca_topic_score_codex":0.00033231504,"about_ca_topic_score_gemma":0.00006142086,"teacher_disagreement_score":0.04264194,"about_ca_system_score_codex":0.00021128407,"about_ca_system_score_gemma":0.00030839574,"threshold_uncertainty_score":0.82172716},"labels":[],"label_agreement":null},{"id":"W1590843514","doi":"10.1159/000081687","title":"Fundamentals of Endotoxin Structure and Function","year":2004,"lang":"en","type":"review","venue":"Contributions to microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Structure function; Physics","score_opus":0.011054064527887727,"score_gpt":0.2886731834835349,"score_spread":0.27761911895564717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1590843514","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008783526,0.9932356,0.0003645156,0.00006086373,0.0008587035,0.0012005992,0.003323855,0.000045304776,0.000032203603],"genre_scores_gemma":[0.0041953563,0.9887657,0.000038624712,0.000053785814,0.000045333363,0.000093817136,0.0061309123,0.000028942932,0.00064748875],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978009,0.0005145715,0.00082540384,0.00042801694,0.000012690903,0.00041843622],"domain_scores_gemma":[0.99874955,0.0002408626,0.00043604392,0.00037512716,0.00016839048,0.000030048392],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023730843,0.00039745768,0.0015462195,0.00044956984,0.00018248273,0.000012038495,0.00022093121,0.0010967809,0.0005317772],"category_scores_gemma":[0.00021790927,0.00032980274,0.00027634297,0.0002780615,0.00029782287,0.000054114742,0.00017874985,0.0004448237,0.00047090938],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014326382,0.000063538275,0.0000022273418,0.0023486812,0.0009311931,0.000002477129,0.00007083515,0.0000010881041,0.6156211,0.004666272,0.0016251896,0.37452418],"study_design_scores_gemma":[0.00072866905,0.00029687723,0.0000078879875,0.0021349774,0.0006251039,0.00052778644,0.000011657717,9.179212e-9,0.034639217,0.00012182278,0.9606327,0.00027333753],"about_ca_topic_score_codex":0.000026179478,"about_ca_topic_score_gemma":0.000007695391,"teacher_disagreement_score":0.95900744,"about_ca_system_score_codex":0.00025271944,"about_ca_system_score_gemma":0.0004183288,"threshold_uncertainty_score":0.9999154},"labels":[],"label_agreement":null},{"id":"W1591119539","doi":"10.4049/jimmunol.174.7.4210","title":"Cross-Talk between CD14 and Complement Receptor 3 Promotes Phagocytosis of Mycobacteria: Regulation by Phosphatidylinositol 3-Kinase and Cytohesin-1","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Research in Immunology and Cancer; Vancouver Coastal Health Research Institute; University of British Columbia; Vancouver Coastal Health","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; British Columbia Lung Association","keywords":"Cell biology; TLR2; Internalization; Phagocytosis; Biology; CD14; PI3K/AKT/mTOR pathway; Phosphatidylinositol; Signal transduction; Receptor; Molecular biology; Flow cytometry; TLR4; Biochemistry","score_opus":0.010148334533123995,"score_gpt":0.24891178527456587,"score_spread":0.23876345074144187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1591119539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98103935,0.017133104,0.00012961522,0.0012441258,0.00019682,0.00019471651,0.0000230608,0.000008806091,0.000030388794],"genre_scores_gemma":[0.99781233,0.001552322,0.00019199676,0.000033295564,0.00006385344,0.000002508774,0.000039892122,0.000011517818,0.00029229198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833024,0.00050895213,0.00078805024,0.00010429812,0.00005041954,0.00021803024],"domain_scores_gemma":[0.998398,0.00038209363,0.0008301314,0.0001840079,0.00019003973,0.000015747073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092526485,0.00015756786,0.00042220537,0.00011625418,0.00020435282,0.000017783095,0.00019697876,0.00019345449,0.00038024713],"category_scores_gemma":[0.00009297028,0.00011126059,0.000057072368,0.00007615513,0.0004889274,0.00026307593,0.000092958195,0.00021909522,0.000018451496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001186899,0.000057197718,0.0036482993,0.000015436233,0.0003956433,4.202095e-7,0.000962278,0.0000014373168,0.9618494,0.00007670498,0.00056952104,0.0312368],"study_design_scores_gemma":[0.0019554282,0.00077386317,0.08924213,0.000054861546,0.00012496965,0.00021466735,0.00020260616,0.000001957411,0.8851591,0.00006770863,0.022104753,0.00009798641],"about_ca_topic_score_codex":0.00003485638,"about_ca_topic_score_gemma":0.0000024325207,"teacher_disagreement_score":0.085593835,"about_ca_system_score_codex":0.000044150118,"about_ca_system_score_gemma":0.00004398438,"threshold_uncertainty_score":0.45370752},"labels":[],"label_agreement":null},{"id":"W1594707968","doi":"10.4049/jimmunol.0902606","title":"Hypochlorous Acid: A Natural Adjuvant That Facilitates Antigen Processing, Cross-Priming, and the Induction of Adaptive Immunity","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":323,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"European Regional Development Fund; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Medical Research Council; Fundacja na rzecz Nauki Polskiej; European Commission; Uniwersytet Jagielloński Collegium Medicum","keywords":"Hypochlorous acid; Innate immune system; Chemistry; Scavenger receptor; Acquired immune system; Adjuvant; Cell biology; Receptor; MHC class I; Major histocompatibility complex; Immune system; Biochemistry; Biology; Immunology; Lipoprotein","score_opus":0.0162831281006464,"score_gpt":0.25299968289173674,"score_spread":0.23671655479109036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1594707968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8738569,0.12445917,0.0001265102,0.0008202217,0.00042825882,0.00016938569,0.0000020362304,0.000011233002,0.00012631006],"genre_scores_gemma":[0.9958679,0.0037471545,0.00004301254,0.00008416805,0.00002632488,0.0000018410782,0.000004861688,0.0000071728587,0.0002175321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977903,0.0011422614,0.00063326926,0.00009479742,0.00006968052,0.00026971154],"domain_scores_gemma":[0.9979842,0.00037398515,0.0010091458,0.00027290548,0.00035079636,0.000008972388],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018877831,0.00018506015,0.00048082683,0.0001580892,0.00043150515,0.00002062764,0.00047388047,0.00021449683,0.00003305095],"category_scores_gemma":[0.0003394493,0.00009456286,0.00013047724,0.0001306119,0.0015528657,0.00035620428,0.00008853169,0.00091577857,0.000012497194],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010611993,0.000063777945,0.00022818265,0.0000068312866,0.00036621196,0.0000024284973,0.009348197,0.000007725761,0.88063455,0.0004655051,0.000049087455,0.0982155],"study_design_scores_gemma":[0.005012072,0.0015231092,0.16091596,0.00012463641,0.00017582289,0.002820305,0.0079844855,0.000019041563,0.8164991,0.0030217036,0.0017291962,0.00017456463],"about_ca_topic_score_codex":0.00009573231,"about_ca_topic_score_gemma":0.0000041393832,"teacher_disagreement_score":0.16068777,"about_ca_system_score_codex":0.000036601672,"about_ca_system_score_gemma":0.000114820534,"threshold_uncertainty_score":0.5721598},"labels":[],"label_agreement":null},{"id":"W159506492","doi":"10.4049/jimmunol.182.supp.94.7","title":"Endoglycan is a CD34-related marker of marginal zone B cells and is upregulated by TLR ligands (94.7)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Marginal zone; Downregulation and upregulation; CD34; Cell biology; CD38; Spleen; Haematopoiesis; CD40; Molecular biology; Splenocyte; Immunology; B cell; Antibody; Cytotoxic T cell; Stem cell; In vitro","score_opus":0.003895105469186587,"score_gpt":0.19882639788992962,"score_spread":0.19493129242074303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W159506492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9658689,0.029478094,0.00007532818,0.0036621746,0.00038350213,0.00012893847,0.000012183456,0.000012448151,0.0003784559],"genre_scores_gemma":[0.9905053,0.0044049225,0.000028449,0.0003817608,0.000015145762,6.983804e-7,0.000010077613,0.000012695761,0.00464096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981503,0.00044252415,0.00086986966,0.00012238024,0.00006307573,0.00035184156],"domain_scores_gemma":[0.99840826,0.00022725588,0.00083024066,0.00030755615,0.00020754733,0.000019154992],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00091346406,0.00021024897,0.000529413,0.00022343548,0.00014795676,0.0000096115755,0.0003688337,0.00038865916,0.0008683207],"category_scores_gemma":[0.000044845445,0.0001441018,0.00014036005,0.00020100115,0.00043945294,0.00015743499,0.00006166843,0.0006134021,0.000068498666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034354744,0.00009948165,0.00007105667,0.000006049889,0.00071275345,0.0000067156843,0.002188725,0.0000017208404,0.9690291,0.000075818316,0.011955991,0.012417091],"study_design_scores_gemma":[0.0030894713,0.001564355,0.008285244,0.0000787057,0.00020221414,0.0017916267,0.00037866874,0.000009686174,0.96614236,0.00033363287,0.017978605,0.00014544009],"about_ca_topic_score_codex":0.00004229389,"about_ca_topic_score_gemma":6.0597836e-7,"teacher_disagreement_score":0.02507317,"about_ca_system_score_codex":0.000032743872,"about_ca_system_score_gemma":0.000082017534,"threshold_uncertainty_score":0.9507503},"labels":[],"label_agreement":null},{"id":"W1596376754","doi":"10.1111/j.1749-6632.2010.05787.x","title":"Immunomodulators as adjuvants for vaccines and antimicrobial therapy","year":2010,"lang":"en","type":"review","venue":"Annals of the New York Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Adjuvant; Immunogenicity; Immune system; Immunology; Vaccine adjuvant; Vaccination; Medicine; Antigen; Antimicrobial; Biology; Microbiology","score_opus":0.1001396432922481,"score_gpt":0.37516216453570844,"score_spread":0.2750225212434603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1596376754","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018562399,0.97863734,0.0000010597012,0.0014196159,0.0005525246,0.0007191411,0.000023672641,0.000010602216,0.00007364911],"genre_scores_gemma":[0.0023904347,0.9959289,0.000055068605,0.000202306,0.000082372586,0.000011210785,0.00000666364,0.000014175973,0.0013088636],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983954,0.00020904126,0.0007098921,0.00030973487,0.00006783448,0.00030810531],"domain_scores_gemma":[0.9983191,0.0004131612,0.0010472543,0.0001570561,0.000045840236,0.0000176002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001111966,0.00027564584,0.0010429543,0.00021350557,0.00030015776,0.00001896958,0.0011203492,0.0006901172,0.000036779216],"category_scores_gemma":[0.0001929375,0.0001557314,0.00047047812,0.00032788163,0.0008117156,0.00014917213,0.00014150675,0.00040803378,0.000016120373],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008886341,0.000023289987,0.000006463178,0.0005060048,0.00016683638,1.4624915e-8,0.00014677527,3.4051283e-7,0.027227696,0.000732333,0.010639151,0.9604622],"study_design_scores_gemma":[0.00027128335,0.00014243597,0.00008372613,0.0019002283,0.00007857341,0.000028656093,0.000016681512,1.9632928e-7,0.13928173,0.0007487103,0.8572958,0.00015196226],"about_ca_topic_score_codex":0.000043478263,"about_ca_topic_score_gemma":6.2684165e-7,"teacher_disagreement_score":0.9603103,"about_ca_system_score_codex":0.0000029626262,"about_ca_system_score_gemma":0.00028904775,"threshold_uncertainty_score":0.63505423},"labels":[],"label_agreement":null},{"id":"W1598301056","doi":"10.1111/j.1751-2980.2011.00486.x","title":"Correlation of the expression of toll‐like receptors in monocyte‐derived dendritic cells with prognosis of chronic severe hepatitis B","year":2011,"lang":"en","type":"article","venue":"Journal of Digestive Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Swine Health Board","keywords":"CD14; Medicine; Pathogenesis; Immunology; Flow cytometry; Hepatitis a virus; Toll-like receptor; White blood cell; Receptor; Internal medicine; Immune system; Virus; Innate immune system","score_opus":0.00909527751883544,"score_gpt":0.20592114376180784,"score_spread":0.1968258662429724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1598301056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965468,0.002766572,0.000093121635,0.000014619452,0.00029947347,0.00019565917,0.000014654435,0.0000024053297,0.000066666384],"genre_scores_gemma":[0.9994721,0.00037600892,0.00005758072,0.0000037972438,0.000007972357,0.0000050255317,0.0000066765174,0.0000071499776,0.00006372779],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989546,0.00028608393,0.0005100397,0.000072346345,0.00007074131,0.00010617818],"domain_scores_gemma":[0.99855125,0.0001584843,0.0008978489,0.00011268453,0.00026549844,0.000014219075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001022061,0.0000960343,0.00028922336,0.00013640375,0.00003355263,0.0000017472537,0.00014593267,0.000083578474,0.00012973767],"category_scores_gemma":[0.00011278019,0.000060907678,0.00011855504,0.00013529124,0.0002042246,0.00020121687,0.000031315743,0.0001305485,0.0000019273057],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021949718,0.00046035947,0.5395711,0.00009206041,0.000113378934,0.0000038178905,0.0015969052,0.00027667807,0.45383444,0.000023325838,0.00012656096,0.0017064275],"study_design_scores_gemma":[0.00074182154,0.0005364586,0.45779067,0.0007330722,0.00007924239,0.000011528034,0.00031090362,0.000004910859,0.53970677,0.000019181462,0.000023062255,0.000042397274],"about_ca_topic_score_codex":0.00007065346,"about_ca_topic_score_gemma":0.000012467909,"teacher_disagreement_score":0.085872315,"about_ca_system_score_codex":0.00005374955,"about_ca_system_score_gemma":0.0002224377,"threshold_uncertainty_score":0.2483743},"labels":[],"label_agreement":null},{"id":"W1599168371","doi":"10.4049/jimmunol.178.4.2171","title":"Bacterial c-di-GMP Is an Immunostimulatory Molecule","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":218,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke; University of Toronto","funders":"","keywords":"CD80; Chemokine; Immune system; CD86; Chemistry; Biology; Immunology; Molecular biology; CD40; T cell; Biochemistry; Cytotoxic T cell; In vitro","score_opus":0.010536295755960691,"score_gpt":0.24630740281370345,"score_spread":0.23577110705774276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1599168371","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875386,0.008166677,0.00085376314,0.00048216508,0.0022580158,0.000112687376,0.0000023509908,0.000022896042,0.00056286395],"genre_scores_gemma":[0.9984285,0.0004143365,0.000043747463,0.00030129502,0.00014419627,7.1296773e-7,0.000013776708,0.000021127911,0.00063225435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978959,0.0006840206,0.00082200987,0.0001041932,0.000061456274,0.00043241528],"domain_scores_gemma":[0.99824667,0.000372448,0.0006278815,0.00045972294,0.0002727561,0.000020531439],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002369803,0.00018710473,0.00035385694,0.0002479378,0.00026160316,0.000014553243,0.0006642397,0.00033431727,0.0010392605],"category_scores_gemma":[0.00016018267,0.00012638936,0.00015310747,0.00014116008,0.0003728654,0.0002975649,0.00009683359,0.0006738003,0.00040534648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046022823,0.000096001815,0.00008258959,0.0000024184149,0.0003956016,0.000015927559,0.0021325627,0.0000059786125,0.9835692,0.00026645165,0.0008986884,0.007932296],"study_design_scores_gemma":[0.0023006352,0.0014199805,0.023465753,0.000025744454,0.00011087856,0.002179946,0.0010897398,0.0000023978062,0.9274825,0.00017543355,0.041577138,0.00016986908],"about_ca_topic_score_codex":0.000044850945,"about_ca_topic_score_gemma":0.000005147392,"teacher_disagreement_score":0.05608672,"about_ca_system_score_codex":0.000068064124,"about_ca_system_score_gemma":0.00014350543,"threshold_uncertainty_score":0.99987394},"labels":[],"label_agreement":null},{"id":"W1601511168","doi":"10.1186/ar1348","title":"An apoptotic signaling pathway activated by Nod1","year":2004,"lang":"en","type":"article","venue":"Arthritis Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Arthritis Network; School of Medicine, University of California, San Diego; Menzies Institute for Medical Research; National Cancer Institute; Arthritis Society; University of North Carolina at Chapel Hill; Genentech; National Institutes of Health; Biogen; Lupus Research Institute; Pfizer; Natural Sciences and Engineering Research Council of Canada; Dutch Arthritis Association; Oesterreichische Nationalbank; Deutsche Forschungsgemeinschaft; Nuffield Foundation; Physiotherapy Foundation of Canada; Canadian Institutes of Health Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Lupus Research Alliance; Wellcome Trust; Newcastle University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; Austrian Science Fund; Arthritis Foundation","keywords":"Business","score_opus":0.0264010904421578,"score_gpt":0.311609932823864,"score_spread":0.2852088423817062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1601511168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99432963,0.003244894,0.00016682473,0.00051313447,0.00013972705,0.00025315938,0.000010026024,0.0000972806,0.001245302],"genre_scores_gemma":[0.9982649,0.0003510271,0.00004997709,0.000051849955,0.00003314502,0.00004129351,0.00027734254,0.000021794936,0.0009086816],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99805754,0.00065964874,0.00024671253,0.00029190394,0.00011495864,0.00062923506],"domain_scores_gemma":[0.9992205,0.00016185487,0.00003683775,0.00034076543,0.00019905463,0.000040970648],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010492639,0.000117717595,0.00016660632,0.00020558927,0.0005181984,0.00006159286,0.00026480993,0.0002281295,0.0008582647],"category_scores_gemma":[0.00019553122,0.00011563865,0.00004794742,0.00031555508,0.0002526916,0.0003525304,0.000057824665,0.0005909377,0.0027107978],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017362225,0.0001394591,0.000027322421,0.000004728887,0.000027735978,0.000014509909,0.00048390502,0.000020013129,0.9563534,0.000989668,0.0008439789,0.040921636],"study_design_scores_gemma":[0.0015536669,0.00050443196,0.00016785132,0.00007593968,0.0000012602048,0.000042191783,0.00039100958,0.0000015134644,0.9680773,0.0006976313,0.028353425,0.00013377519],"about_ca_topic_score_codex":0.00032051135,"about_ca_topic_score_gemma":0.00002458129,"teacher_disagreement_score":0.04078786,"about_ca_system_score_codex":0.000085600914,"about_ca_system_score_gemma":0.00017268988,"threshold_uncertainty_score":0.9980657},"labels":[],"label_agreement":null},{"id":"W1603446342","doi":"10.4049/jimmunol.166.5.3451","title":"Intranasal Immunization with CpG Oligodeoxynucleotides as an Adjuvant Dramatically Increases IgA and Protection Against Herpes Simplex Virus-2 in the Genital Tract","year":2001,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":219,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; McMaster University; Ottawa Hospital; McMaster University Medical Centre","funders":"","keywords":"CpG Oligodeoxynucleotide; Herpes simplex virus; Adjuvant; Nasal administration; Immunology; Immune system; Virology; CTL*; Immunization; Biology; CpG site; Virus; Medicine; CD8","score_opus":0.009609360313638009,"score_gpt":0.22804162473250733,"score_spread":0.21843226441886932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1603446342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99487126,0.002650428,0.00056723744,0.0012995659,0.00009460015,0.00033509615,0.000001766289,0.000017481309,0.000162594],"genre_scores_gemma":[0.99723876,0.0023575579,0.000039703573,0.0002456551,0.00004097606,0.000012245893,0.000015072952,0.000017303999,0.0000327174],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99709797,0.0018312398,0.0006047967,0.00010688619,0.000074867916,0.00028423112],"domain_scores_gemma":[0.9987158,0.0003960072,0.00043138035,0.0002762594,0.00016609833,0.000014426793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014146311,0.00018962215,0.00032292507,0.00022320349,0.00031676076,0.00004387536,0.00039515152,0.00019562233,0.00010507272],"category_scores_gemma":[0.00024163447,0.00010057668,0.000052663152,0.00024479683,0.00047258634,0.000509515,0.000041615895,0.0005785937,0.000024663543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009440464,0.00064124836,0.00034686638,0.000012953264,0.0003961574,0.00007747162,0.008866204,0.00021943101,0.8635813,0.00080603035,0.000037171467,0.1155747],"study_design_scores_gemma":[0.0162387,0.01752181,0.45902237,0.00056378933,0.00083649927,0.054419298,0.056446888,0.00048690278,0.36094064,0.0058247107,0.026526885,0.0011715184],"about_ca_topic_score_codex":0.00047831854,"about_ca_topic_score_gemma":0.00024310542,"teacher_disagreement_score":0.50264066,"about_ca_system_score_codex":0.00004176961,"about_ca_system_score_gemma":0.00011444634,"threshold_uncertainty_score":0.4101398},"labels":[],"label_agreement":null},{"id":"W1604720580","doi":"10.3390/molecules20058316","title":"Structure Based Modeling of Small Molecules Binding to the TLR7 by Atomistic Level Simulations","year":2015,"lang":"en","type":"article","venue":"Molecules","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Li Ka Shing Institute of Virology, University of Alberta; Natural Sciences and Engineering Research Council of Canada; Politecnico di Torino","keywords":"TLR7; In silico; Receptor; Docking (animal); Computational biology; Molecular dynamics; Chemistry; Mechanism (biology); Biophysics; Small molecule; Molecular model; Toll-like receptor; Biology; Biochemistry; Innate immune system; Gene; Medicine; Computational chemistry; Physics","score_opus":0.04064499910256681,"score_gpt":0.25180934991668685,"score_spread":0.21116435081412005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1604720580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8180848,0.0006752859,0.17994145,0.00057483686,0.00014480182,0.00023867702,0.00016658027,0.000029438062,0.00014413585],"genre_scores_gemma":[0.99794596,0.0000018481501,0.0012317246,0.00017857779,0.000011889108,0.00000891363,0.00032811463,0.000016411648,0.00027658502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999127,0.00018680478,0.00026717153,0.00016385381,0.00004904839,0.00020613187],"domain_scores_gemma":[0.999375,0.00010405549,0.00008574829,0.00027301925,0.00013862876,0.000023533286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015905425,0.00013544601,0.0001628725,0.000107076805,0.00013505235,0.000016601343,0.00022324464,0.00013520039,0.00004978842],"category_scores_gemma":[0.0002990196,0.000101641184,0.00005464966,0.00015261512,0.00005076812,0.000036734706,0.00005455886,0.00013441901,0.000068714144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014003512,0.000019129535,0.000048369613,0.000008346282,0.00004717054,8.4398596e-7,0.00043534633,0.20381573,0.7930976,0.0005013553,0.0010441995,0.0008418817],"study_design_scores_gemma":[0.0012089327,0.00013482023,0.00014168695,0.0000590301,0.00007161055,0.000008250531,0.00042840134,0.19294044,0.797671,0.00043002065,0.0066429707,0.00026282933],"about_ca_topic_score_codex":0.00009666084,"about_ca_topic_score_gemma":0.00003850889,"teacher_disagreement_score":0.17986113,"about_ca_system_score_codex":0.000033308104,"about_ca_system_score_gemma":0.00009723453,"threshold_uncertainty_score":0.41448072},"labels":[],"label_agreement":null},{"id":"W1608661399","doi":"10.1007/bf03401824","title":"Intranasal Immunization of Mice with CpG DNA Induces Strong Systemic and Mucosal Responses That Are Influenced by Other Mucosal Adjuvants and Antigen Distribution","year":2000,"lang":"en","type":"article","venue":"Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"Medical Research Council","keywords":"Nasal administration; Immunology; Immunization; CpG site; CpG Oligodeoxynucleotide; Antigen; Molecular medicine; TLR9; Medicine; Biology; DNA methylation; Gene; Cell cycle; Genetics","score_opus":0.0060516630690488045,"score_gpt":0.2202095756359267,"score_spread":0.21415791256687788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1608661399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98621774,0.011738732,0.0011814734,0.0004102419,0.000051796265,0.00026412777,0.000042940486,0.000028631472,0.00006429695],"genre_scores_gemma":[0.9987151,0.0006864435,0.000011462913,0.00007647739,0.000010552526,0.000012130313,0.00034408932,0.00001558443,0.00012816011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998887,0.00035435328,0.00028119952,0.00020841128,0.00007564766,0.0001933653],"domain_scores_gemma":[0.9994739,0.00007652723,0.00017930407,0.00017523383,0.00007223975,0.000022755043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027958452,0.00017015162,0.00030690053,0.00008423576,0.00010359273,0.000008274182,0.00008890267,0.0001728976,0.00013365615],"category_scores_gemma":[0.00007317643,0.00012881908,0.000016326068,0.0001348344,0.00039303952,0.00012999799,0.000020090773,0.00014501733,0.000005014841],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001127462,0.000022768381,0.005712642,0.000051641273,0.000111408706,0.0000079103675,0.0005190738,0.000004092936,0.98587006,0.00008071181,0.000102468504,0.0063897446],"study_design_scores_gemma":[0.0034172987,0.00058828545,0.1521254,0.00056330865,0.00011594013,0.00022232354,0.0009799319,0.000019701816,0.84008425,0.000016390624,0.0016621315,0.00020504679],"about_ca_topic_score_codex":0.00020023341,"about_ca_topic_score_gemma":0.000007309762,"teacher_disagreement_score":0.14641276,"about_ca_system_score_codex":0.00001966932,"about_ca_system_score_gemma":0.00003597062,"threshold_uncertainty_score":0.52530897},"labels":[],"label_agreement":null},{"id":"W1614434271","doi":"10.1186/cc3252","title":"Alpha-1-acid glycoprotein reduces hepatic leukocyte recruitment in early sepsis","year":2005,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institutes of Health","keywords":"Medicine; Family medicine","score_opus":0.03547367811416156,"score_gpt":0.31441492530244625,"score_spread":0.27894124718828467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1614434271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98302567,0.012413055,0.000036082354,0.0023974539,0.0002864627,0.0003793331,0.000006707474,0.0000623763,0.0013928822],"genre_scores_gemma":[0.99863625,0.000049889084,0.00022753762,0.00033222116,0.000057087567,0.00018184904,0.00006096859,0.000014267326,0.0004399367],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987323,0.00026252,0.0003269663,0.00024698093,0.000046154557,0.00038502252],"domain_scores_gemma":[0.9995077,0.00012042907,0.000027921351,0.00022597422,0.00009198189,0.000025944319],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015537965,0.00015034335,0.00022397217,0.000114636765,0.00011670698,0.000025693042,0.0001446346,0.0002249102,0.0005180241],"category_scores_gemma":[0.00031017585,0.00014126109,0.00008041281,0.000116452575,0.00016412897,0.00019083159,0.000053922555,0.0002635199,0.0012077107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042569544,0.00008953365,0.00057771476,0.00007604632,0.000030855277,0.000027963057,0.0040078633,0.0000033807705,0.90801907,0.0011992304,0.00066552777,0.08487715],"study_design_scores_gemma":[0.00075549376,0.0002535235,0.005992904,0.00009396646,0.00002480789,0.000018314093,0.0010735285,0.0000057194566,0.95582366,0.00009233845,0.035676163,0.00018960927],"about_ca_topic_score_codex":0.00006921624,"about_ca_topic_score_gemma":0.00003337023,"teacher_disagreement_score":0.08468754,"about_ca_system_score_codex":0.00017147654,"about_ca_system_score_gemma":0.000051085543,"threshold_uncertainty_score":0.99956995},"labels":[],"label_agreement":null},{"id":"W1622357346","doi":"10.4049/jimmunol.0803576","title":"Early Life Exposure to Lipopolysaccharide Suppresses Experimental Autoimmune Encephalomyelitis by Promoting Tolerogenic Dendritic Cells and Regulatory T Cells","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary; University of Alberta","funders":"","keywords":"Experimental autoimmune encephalomyelitis; Lipopolysaccharide; Immunology; Encephalomyelitis; Dendritic cell; Biology; Cell biology; Medicine; Chemistry; Immune system; Multiple sclerosis","score_opus":0.0056342830171391385,"score_gpt":0.21335311948526875,"score_spread":0.2077188364681296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1622357346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94193405,0.05571031,0.00006268338,0.0011710674,0.00079889945,0.00025302358,0.0000062353015,0.000029712714,0.000034009234],"genre_scores_gemma":[0.99822,0.0007751845,0.00005707835,0.00039718903,0.0000637281,0.0000053197787,0.000004356421,0.000019998492,0.00045713273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973527,0.000968795,0.0009103333,0.00018474493,0.00008815815,0.00049524405],"domain_scores_gemma":[0.9985952,0.00031291292,0.0005150288,0.00037513647,0.00014863098,0.000053088836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009949474,0.0002609202,0.00050336606,0.00019624314,0.000320126,0.000040143364,0.00054335076,0.00028239886,0.00022219724],"category_scores_gemma":[0.00014754875,0.00019817716,0.00012825339,0.00011319484,0.0002796674,0.0003152087,0.000119732984,0.0005948052,0.00011736041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080458826,0.000111252244,0.000018589812,0.000005775181,0.00023740678,0.00001066958,0.0047279624,0.000010258547,0.9875378,0.00009851759,0.0012873147,0.0051498446],"study_design_scores_gemma":[0.0012764108,0.0024847158,0.0089377295,0.000090310525,0.00008362316,0.00083484716,0.001614254,0.000001873856,0.9818182,0.000052533906,0.0026054129,0.00020010112],"about_ca_topic_score_codex":0.000049076712,"about_ca_topic_score_gemma":8.495144e-7,"teacher_disagreement_score":0.05628595,"about_ca_system_score_codex":0.00006140364,"about_ca_system_score_gemma":0.000119311015,"threshold_uncertainty_score":0.808143},"labels":[],"label_agreement":null},{"id":"W1626946806","doi":"10.1007/978-1-4419-0298-6_23","title":"Innate Immunity of Spondyloarthritis: The Role of Toll-Like Receptors","year":2009,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University of Toronto","funders":"","keywords":"Toll; Innate immune system; Immunology; Immunity; Toll-like receptor; Receptor; Medicine; Neuroscience; Biology; Immune system; Internal medicine","score_opus":0.02103703469643333,"score_gpt":0.3457633938924704,"score_spread":0.3247263591960371,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1626946806","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003096618,0.99450296,9.392917e-7,0.000028099916,0.000779462,0.00038497878,0.000007641927,0.000008626652,0.001190642],"genre_scores_gemma":[0.016236013,0.98332024,0.000013757762,0.000036818616,0.00003592898,0.000041944975,0.00023776629,0.000009553649,0.000067987814],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99795777,0.0007094789,0.0008657659,0.00022215766,0.00002463082,0.00022020195],"domain_scores_gemma":[0.9987552,0.0004101057,0.00052352535,0.00027490692,0.000025870233,0.000010346506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004044828,0.0002649516,0.0013672863,0.00023418944,0.000059530663,0.000001043226,0.00028048363,0.00037244952,0.00015090579],"category_scores_gemma":[0.00008706129,0.00015169154,0.00011515002,0.00020912185,0.0011293256,0.000083535335,0.000100607256,0.0003625369,0.0000070612714],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001319147,0.000067413195,0.000019975945,0.00030059658,0.000060628172,9.3633e-7,0.00056623196,3.9101124e-8,0.018703058,0.0013434932,0.00003811384,0.9787676],"study_design_scores_gemma":[0.0006157164,0.0011528663,0.000006402698,0.0032849605,0.00006262181,0.00008537711,0.0018805409,7.7422904e-8,0.016829824,0.00031504978,0.9756322,0.00013439772],"about_ca_topic_score_codex":0.000091174225,"about_ca_topic_score_gemma":0.000009513407,"teacher_disagreement_score":0.9786332,"about_ca_system_score_codex":0.000025783338,"about_ca_system_score_gemma":0.00004764701,"threshold_uncertainty_score":0.61858016},"labels":[],"label_agreement":null},{"id":"W1628005392","doi":"10.4049/jimmunol.178.5.3170","title":"A Role of Toll-IL-1 Receptor Domain-Containing Adaptor-Inducing IFN-β in the Host Response to <i>Pseudomonas aeruginosa</i> Lung Infection in Mice","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Killam Trusts","keywords":"TRIF; Pseudomonas aeruginosa; Chemokine; Signal transducing adaptor protein; TLR4; Toll-like receptor; Immunology; CXCL1; Cytokine; Biology; Signal transduction; Microbiology; Immune system; Cell biology; Innate immune system; Bacteria","score_opus":0.006590790587675849,"score_gpt":0.2368350086910714,"score_spread":0.23024421810339557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1628005392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929816,0.004222801,0.00020853868,0.001435184,0.0005370837,0.00033495197,0.0000025633121,0.000008817113,0.00026842003],"genre_scores_gemma":[0.9991823,0.00036420018,0.00009817266,0.00021754722,0.00005090085,0.000006605043,0.0000031915924,0.000015107522,0.00006200198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9952838,0.002843771,0.0011661144,0.0001337476,0.00008995156,0.00048263263],"domain_scores_gemma":[0.9965928,0.0022016768,0.0007141213,0.00031583768,0.00016075402,0.00001479229],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010666437,0.00019281195,0.0004560385,0.0007493933,0.00015647752,0.000010903943,0.0005330419,0.0003047924,0.000042970103],"category_scores_gemma":[0.0007688064,0.000127506,0.00012481555,0.0005697327,0.00017565404,0.00021134588,0.00010082324,0.0010226216,0.000038570506],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.026194932,0.00010203546,0.002276756,0.0000051825386,0.00012417884,0.000013150896,0.016319053,0.00004423828,0.9518673,0.00021000356,0.00011811153,0.002725075],"study_design_scores_gemma":[0.0028517188,0.0016099798,0.26124725,0.0002354208,0.000045215456,0.0011960065,0.015261038,0.000002205878,0.7077254,0.000117499156,0.0095342025,0.00017402299],"about_ca_topic_score_codex":0.00076035684,"about_ca_topic_score_gemma":0.00041290818,"teacher_disagreement_score":0.2589705,"about_ca_system_score_codex":0.00022855471,"about_ca_system_score_gemma":0.00019365155,"threshold_uncertainty_score":0.5199544},"labels":[],"label_agreement":null},{"id":"W1628984902","doi":"10.4049/jimmunol.177.11.8154","title":"The Role of TLR2 In Vivo following Challenge with <i>Staphylococcus aureus</i> and Prototypic Ligands","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Institute of Infection and Immunity","funders":"","keywords":"Lipoteichoic acid; TLR2; In vivo; Biology; Peptidoglycan; Microbiology; Staphylococcus aureus; Peritonitis; Immune system; Immunology; In vitro; Innate immune system; Biochemistry; Bacteria; Cell wall","score_opus":0.0030076989477608447,"score_gpt":0.19052551549049584,"score_spread":0.187517816542735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1628984902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94023025,0.057675358,0.000014472107,0.0007313138,0.0001505362,0.00023998492,7.327392e-7,0.0000043915243,0.0009529859],"genre_scores_gemma":[0.99834514,0.0013073443,0.000010192908,0.00001494797,0.000023788249,0.00000606219,7.540008e-7,0.000009631783,0.00028216006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987843,0.0003318261,0.00051010086,0.00006659413,0.000043134554,0.00026403033],"domain_scores_gemma":[0.9988811,0.00037675863,0.0004437825,0.0002087014,0.00008421198,0.000005462018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010732913,0.000121596735,0.00028923329,0.00012551222,0.00015344418,0.00000910089,0.00028999575,0.0001460739,0.000017403205],"category_scores_gemma":[0.00004719692,0.00006056284,0.00007108123,0.00012153283,0.00032009723,0.00010518709,0.000052830837,0.0004097934,0.000006605115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002442724,0.000062618965,0.0020481881,0.000005038765,0.00023990852,0.0000060351385,0.0008974577,0.000011269691,0.99000293,0.001278013,0.000067978624,0.002937854],"study_design_scores_gemma":[0.0026025567,0.0014021597,0.0139685245,0.00011242811,0.000081877966,0.0002870136,0.0022775114,0.0000031341349,0.9456708,0.002175001,0.03130717,0.0001118643],"about_ca_topic_score_codex":0.00009739959,"about_ca_topic_score_gemma":0.00008019616,"teacher_disagreement_score":0.058114894,"about_ca_system_score_codex":0.000023751729,"about_ca_system_score_gemma":0.000086523025,"threshold_uncertainty_score":0.24696809},"labels":[],"label_agreement":null},{"id":"W1631759172","doi":"10.4049/jimmunol.1302896","title":"NADPH Oxidase Modifies Patterns of MHC Class II–Restricted Epitopic Repertoires through Redox Control of Antigen Processing","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Experimental autoimmune encephalomyelitis; MHC class II; Phagosome; Myelin oligodendrocyte glycoprotein; Cell biology; NADPH oxidase; Proteolysis; T cell; Biology; Antigen-presenting cell; Chemistry; MHC restriction; Dendritic cell; Cathepsin; Antigen presentation; Antigen; Biochemistry; Immunology; Immune system; Phagocytosis; Reactive oxygen species; Enzyme","score_opus":0.008651025899292475,"score_gpt":0.22614219013452505,"score_spread":0.21749116423523257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1631759172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9801568,0.014233058,0.003818808,0.0009805993,0.00046878294,0.0001361127,0.0000058584837,0.000012738867,0.00018725435],"genre_scores_gemma":[0.99818987,0.0013704391,0.00004772313,0.000074810145,0.000049767437,0.0000022752824,0.0000067430274,0.0000133951435,0.0002450006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973652,0.0011182046,0.0010643144,0.000101094105,0.000071748334,0.00027945146],"domain_scores_gemma":[0.99718374,0.00045599358,0.0015521945,0.00036614467,0.000432971,0.000008972068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076752395,0.0001708931,0.0006300066,0.00018246181,0.00021675842,0.000005584073,0.0005103764,0.0002745635,0.000076518125],"category_scores_gemma":[0.00052031723,0.00011019009,0.0001575368,0.00013585316,0.0004356498,0.00021499835,0.00008833065,0.00044345442,0.000008012359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020098733,0.00011270798,0.0013399532,0.000036664846,0.0004226257,0.0000022639542,0.0020451525,0.000053109445,0.978323,0.00075275794,0.000086932974,0.014814969],"study_design_scores_gemma":[0.0032085718,0.0015918604,0.032549143,0.00021925179,0.00017383044,0.0004952294,0.000970205,0.00004677743,0.95008147,0.0007958921,0.009730968,0.00013679118],"about_ca_topic_score_codex":0.0002040194,"about_ca_topic_score_gemma":0.0000062561676,"teacher_disagreement_score":0.031209188,"about_ca_system_score_codex":0.00002809221,"about_ca_system_score_gemma":0.00013999577,"threshold_uncertainty_score":0.44934216},"labels":[],"label_agreement":null},{"id":"W1632867508","doi":"10.4049/jimmunol.174.6.3719","title":"The Cytokine IL-1β Activates IFN Response Factor 3 in Human Fetal Astrocytes in Culture","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Neurological Disorders and Stroke; National Institute of Mental Health; McGill University","keywords":"IRF3; IRF7; Interferon regulatory factors; CXCL10; CCL5; STAT1; Biology; Chemokine; Signal transduction; SOCS3; STAT2; Cytokine; ISG15; Molecular biology; Cell biology; STAT3; Transcription factor; STAT protein; Immunology; T cell; Gene; IL-2 receptor; Immune system; Biochemistry","score_opus":0.008870750864193155,"score_gpt":0.24930475507160407,"score_spread":0.24043400420741093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1632867508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864933,0.009218267,0.000015608166,0.0036870555,0.00033194525,0.00014277727,0.0000044127723,0.000010499255,0.00009617363],"genre_scores_gemma":[0.99703914,0.0012082579,0.000020331672,0.00007375118,0.000080875776,0.0000045516085,0.000004929426,0.000013010127,0.0015551586],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966114,0.0020483634,0.00077282696,0.00009759922,0.000053934604,0.00041587],"domain_scores_gemma":[0.99811023,0.0009841465,0.0005007053,0.00028879373,0.00010620707,0.000009898314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018228549,0.0001856087,0.00034566034,0.00026989245,0.00029906406,0.000019410356,0.0006314665,0.00027512267,0.00011933866],"category_scores_gemma":[0.0004949485,0.00009891179,0.00011133135,0.00020263686,0.0003598753,0.00025826346,0.00010512129,0.0011841806,0.000098536686],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010797957,0.000084415144,0.0004510472,0.0000015638558,0.00015426526,0.000009160513,0.0029523682,0.000044412944,0.97663194,0.00012083801,0.0003933253,0.0083586825],"study_design_scores_gemma":[0.0026941558,0.00084100856,0.11045841,0.00005647609,0.00001958993,0.0007316884,0.0022686815,0.0000028177226,0.7958555,0.00009843836,0.08685134,0.00012185861],"about_ca_topic_score_codex":0.00004354271,"about_ca_topic_score_gemma":0.00013740828,"teacher_disagreement_score":0.18077643,"about_ca_system_score_codex":0.00017507203,"about_ca_system_score_gemma":0.00011241097,"threshold_uncertainty_score":0.51447415},"labels":[],"label_agreement":null},{"id":"W1664228137","doi":"10.1111/j.1600-0897.2008.00605.x","title":"ORIGINAL ARTICLE: LPS‐Induced Murine Abortions Require C5 but not C3, and are Prevented by Upregulating Expression of the CD200 Tolerance Signaling Molecule","year":2008,"lang":"en","type":"article","venue":"American Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; McMaster University; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Lipopolysaccharide; Andrology; Abortion; Medicine; Endocrinology; Internal medicine; Pregnancy; Immunology; Transgene; Biology; Gene; Biochemistry","score_opus":0.009070047462551648,"score_gpt":0.23505730689201232,"score_spread":0.22598725942946069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1664228137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99410117,0.003922752,0.00035935978,0.0010125418,0.0003741082,0.00018330406,0.000007862004,0.000015297615,0.000023624465],"genre_scores_gemma":[0.9988342,0.00026974903,0.00031919754,0.0000492595,0.00006457095,0.000007740025,0.0000040742107,0.00001757352,0.00043363887],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977241,0.0008038528,0.0007746683,0.00030922634,0.000091132686,0.00029699132],"domain_scores_gemma":[0.99717385,0.00015983832,0.0017330912,0.00046523436,0.00044765222,0.000020320114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046019178,0.00019180299,0.0005367222,0.00013106698,0.00034404531,0.000005954135,0.00027213365,0.000103730265,0.00005677467],"category_scores_gemma":[0.0005512675,0.00014282824,0.00013302866,0.00034418528,0.0011139982,0.00030973429,0.00010419235,0.0005195638,0.0000059826593],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013765265,0.00011898984,0.004137687,0.0000077973,0.00020102473,0.0000090482445,0.0011127838,0.000065289816,0.9879834,0.000031847223,0.00014258867,0.0048130034],"study_design_scores_gemma":[0.00093166286,0.0007032421,0.05855092,0.00016104417,0.000045794164,0.0015081991,0.0014022441,0.0000041301278,0.9356958,0.000034556684,0.0008293406,0.00013303223],"about_ca_topic_score_codex":0.000089177,"about_ca_topic_score_gemma":9.450677e-7,"teacher_disagreement_score":0.054413237,"about_ca_system_score_codex":0.000057207453,"about_ca_system_score_gemma":0.00013440232,"threshold_uncertainty_score":0.5824367},"labels":[],"label_agreement":null},{"id":"W1669180776","doi":"10.4049/jimmunol.169.12.7078","title":"Mitochondrial Reactive Oxygen Species Regulate Spatial Profile of Proinflammatory Responses in Lung Venular Capillaries","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Heart, Lung, and Blood Institute","keywords":"Proinflammatory cytokine; Reactive oxygen species; Cell biology; Cytosol; Mitochondrial ROS; Chemistry; Receptor; Tumor necrosis factor alpha; Mitochondrion; Inflammation; Endocrinology; Internal medicine; Biology; Biochemistry; Immunology; Medicine; Enzyme","score_opus":0.01106818774892093,"score_gpt":0.21394350118838015,"score_spread":0.20287531343945922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1669180776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97823805,0.019078081,0.000048086687,0.0008600727,0.0010719824,0.00028734407,0.000006525713,0.000010476155,0.00039937603],"genre_scores_gemma":[0.99621683,0.0013051407,0.00005252404,0.00001777763,0.000103503895,0.0000061675364,0.0000075819075,0.000016694501,0.0022737924],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997107,0.0014891782,0.0009086454,0.00010658244,0.000080425096,0.00030815433],"domain_scores_gemma":[0.9979253,0.0005229898,0.00096092385,0.0003435283,0.00023733388,0.000009923548],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086848397,0.00017470619,0.0005010599,0.00037003425,0.00014230277,0.000007884423,0.00041878852,0.00027991208,0.0005402255],"category_scores_gemma":[0.00066382013,0.00012355742,0.00013582295,0.00016833408,0.0006174876,0.00021034911,0.00009297653,0.00061189616,0.00006897481],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0077851363,0.00008780818,0.00044991,0.000017880753,0.00036432088,0.000027849263,0.0054942644,0.00001485303,0.9825762,0.00028137254,0.0013480884,0.0015523505],"study_design_scores_gemma":[0.0028909112,0.00081895536,0.06410717,0.0001493336,0.00010843837,0.0009703018,0.0014145377,0.000017618537,0.91140276,0.00023720888,0.017718082,0.00016468245],"about_ca_topic_score_codex":0.000074462594,"about_ca_topic_score_gemma":0.000019329842,"teacher_disagreement_score":0.07117341,"about_ca_system_score_codex":0.000098158554,"about_ca_system_score_gemma":0.00012686313,"threshold_uncertainty_score":0.591509},"labels":[],"label_agreement":null},{"id":"W1670151716","doi":"10.4049/jimmunol.166.7.4664","title":"Evidence for a Role for SAM68 in the Responses of Human Neutrophils to Ligation of CD32 and to Monosodium Urate Crystals","year":2001,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"National Institutes of Health","keywords":"Uric acid; Ligation; Internal medicine; Chemistry; Immunology; Endocrinology; Medicine","score_opus":0.04908733447160516,"score_gpt":0.32162844768942345,"score_spread":0.27254111321781826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1670151716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9863078,0.0070127263,0.0008207656,0.005064168,0.0001214711,0.00065122906,0.0000058095125,0.0000024335677,0.00001360272],"genre_scores_gemma":[0.99880123,0.0007100153,0.000116772884,0.00017337436,0.000025145868,0.000029428184,0.000002119382,0.0000069771827,0.00013493415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833226,0.0006847162,0.0006790218,0.00007641731,0.000035127418,0.00019246373],"domain_scores_gemma":[0.9970601,0.0019277009,0.00049872266,0.00022166442,0.00028367995,0.00000810248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002350108,0.00009699874,0.00032247332,0.00026897425,0.00011691366,0.0000065483277,0.00037266963,0.00010975183,0.000012099639],"category_scores_gemma":[0.001049099,0.000058346846,0.00008126873,0.00016836304,0.00014120052,0.00012553742,0.000048948386,0.00014468978,0.0000025960126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014018657,0.000042788863,0.00018058042,0.000014240544,0.000087692184,6.2199797e-7,0.0051785624,0.000049353606,0.9765608,0.00049241324,0.00022199497,0.0031523197],"study_design_scores_gemma":[0.0017287204,0.0060384846,0.065235935,0.00028408846,0.0000999473,0.00032514616,0.0038485473,0.000004766478,0.9164557,0.0022447456,0.0036392775,0.00009468004],"about_ca_topic_score_codex":0.0000626532,"about_ca_topic_score_gemma":0.000022843262,"teacher_disagreement_score":0.065055355,"about_ca_system_score_codex":0.000023601724,"about_ca_system_score_gemma":0.00006907154,"threshold_uncertainty_score":0.23793153},"labels":[],"label_agreement":null},{"id":"W1671647835","doi":"10.4049/jimmunol.175.11.7288","title":"Cooperation between 4-1BB and ICOS in the Immune Response to Influenza Virus Revealed by Studies of CD28/ICOS-Deficient Mice","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto; University Health Network","funders":"Amgen","keywords":"Immune system; CD28; Virology; Virus; Immunology; Biology; T cell","score_opus":0.022620665216777473,"score_gpt":0.2955167657639932,"score_spread":0.27289610054721575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1671647835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9233094,0.06969191,0.00006641261,0.0064263945,0.00017511524,0.00029471406,0.000007933949,0.0000058796213,0.000022284283],"genre_scores_gemma":[0.99652904,0.0026215592,0.000036100377,0.00054741616,0.00003228901,0.000008288416,0.000004854109,0.000010581237,0.00020989361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9954266,0.0029968023,0.0011116748,0.00010988237,0.00007303844,0.00028198768],"domain_scores_gemma":[0.9969924,0.001810174,0.0005947584,0.00031579292,0.00027657085,0.00001030428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005057242,0.00017528953,0.00052411295,0.00029309877,0.00021257879,0.0000117684385,0.00048835593,0.00018815805,0.000028944614],"category_scores_gemma":[0.0010100376,0.000101802616,0.000073709816,0.0002785847,0.00038349748,0.0001743662,0.00012630988,0.0005558159,0.000057613106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007466615,0.00008932037,0.00031140028,0.000007254889,0.00033139376,0.0000019133142,0.01255475,0.00007561213,0.972232,0.00008491548,0.0010530561,0.0057917987],"study_design_scores_gemma":[0.003977256,0.002632487,0.0927975,0.00017182612,0.00021014639,0.00059968885,0.0079941945,0.0000030128974,0.8272218,0.000071608716,0.06410608,0.00021437641],"about_ca_topic_score_codex":0.000052812044,"about_ca_topic_score_gemma":0.000018997322,"teacher_disagreement_score":0.14501016,"about_ca_system_score_codex":0.0000865544,"about_ca_system_score_gemma":0.00008733588,"threshold_uncertainty_score":0.41513902},"labels":[],"label_agreement":null},{"id":"W1673809118","doi":"10.4049/jimmunol.175.12.8236","title":"Pure Lipopolysaccharide or Synthetic Lipid A Induces Activation of p21Ras in Primary Macrophages through a Pathway Dependent on Src Family Kinases and PI3K","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Wortmannin; Lipopolysaccharide; MAPK/ERK pathway; Cell biology; PI3K/AKT/mTOR pathway; Proto-oncogene tyrosine-protein kinase Src; Kinase; LY294002; Chemistry; Macrophage; Signal transduction; Lipid A; Src family kinase; GTPase; Biology; Immunology; Biochemistry","score_opus":0.01501923015402186,"score_gpt":0.2383854142486099,"score_spread":0.22336618409458803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1673809118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901554,0.0077650575,0.000049597842,0.0013571765,0.00029344764,0.0001813022,0.0000034120737,0.000009527213,0.00018508102],"genre_scores_gemma":[0.99611807,0.0032638996,0.000056014727,0.00026662732,0.000062169165,0.0000055446753,0.0000035809276,0.000013970655,0.00021013437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980131,0.00081366004,0.0007252722,0.00012230621,0.00007324929,0.00025242276],"domain_scores_gemma":[0.9981455,0.0007697352,0.0007123549,0.00024559424,0.00011816483,0.000008603389],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082670845,0.00018215289,0.00044601198,0.000279143,0.00011247483,0.000010584452,0.00031688344,0.00022569257,0.000091853304],"category_scores_gemma":[0.00031870278,0.00011029504,0.000070853006,0.00012325018,0.00028545925,0.00032848516,0.00009174928,0.0006083204,0.000027232367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058495216,0.00019425804,0.000052104577,0.000017038137,0.00020226669,0.000011181137,0.0025161994,0.00006173647,0.9461144,0.00030137724,0.000052717085,0.044627152],"study_design_scores_gemma":[0.0022713994,0.0013624751,0.009142097,0.00025339102,0.00005006532,0.0009259422,0.0018223614,0.0000014037769,0.98269916,0.00018039787,0.0011757846,0.00011554322],"about_ca_topic_score_codex":0.00010704034,"about_ca_topic_score_gemma":0.000022540593,"teacher_disagreement_score":0.04451161,"about_ca_system_score_codex":0.00009936564,"about_ca_system_score_gemma":0.00017791006,"threshold_uncertainty_score":0.44977012},"labels":[],"label_agreement":null},{"id":"W1673881514","doi":"10.4049/jimmunol.174.3.1602","title":"Immune Activation of Type I IFNs by <i>Listeria monocytogenes</i> Occurs Independently of TLR4, TLR2, and Receptor Interacting Protein 2 but Involves TANK-Binding Kinase 1","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Howard Hughes Medical Institute; U.S. Public Health Service; National Cancer Institute; National Institutes of Health; University of California, Los Angeles; University of Toronto","keywords":"TANK-binding kinase 1; TLR2; Signal transduction; Biology; Cell biology; TLR4; Kinase; Listeria monocytogenes; Intracellular; Protein kinase A; Intracellular parasite; MAP kinase kinase kinase; Bacteria; Genetics","score_opus":0.015313894509863894,"score_gpt":0.24673204157253034,"score_spread":0.23141814706266645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1673881514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888313,0.00972344,0.000100202866,0.0005743414,0.00046432132,0.00022325986,0.000010055697,0.00000886448,0.00006425484],"genre_scores_gemma":[0.99831367,0.00092818134,0.00015744525,0.000028091816,0.00003749275,0.000002990797,0.000028099445,0.000017034969,0.0004870005],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99782294,0.0007250417,0.00103408,0.00010936017,0.000067570225,0.00024098897],"domain_scores_gemma":[0.9972955,0.00036160238,0.0017626531,0.0002469522,0.00032057063,0.000012710506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011050209,0.0001841778,0.0004883098,0.0002502706,0.00014163686,0.0000106716125,0.000359658,0.0002683329,0.00018177484],"category_scores_gemma":[0.00042879657,0.00013713683,0.00009454922,0.00017019421,0.00030274925,0.00042499835,0.00013985568,0.0005223434,0.000022657086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004233328,0.00010393568,0.00016128614,0.000026693488,0.00042373766,7.0285785e-7,0.0018638318,0.0000122560805,0.97999007,0.00007485351,0.00023281074,0.012876479],"study_design_scores_gemma":[0.0014730856,0.0008475914,0.0010405415,0.00024037006,0.000069335074,0.00020258645,0.0027312578,0.0000039205383,0.98839664,0.000032226166,0.0048461063,0.00011635243],"about_ca_topic_score_codex":0.00012263951,"about_ca_topic_score_gemma":0.0000044148724,"teacher_disagreement_score":0.012760126,"about_ca_system_score_codex":0.000077691875,"about_ca_system_score_gemma":0.00010837086,"threshold_uncertainty_score":0.55922776},"labels":[],"label_agreement":null},{"id":"W1697895173","doi":"10.1111/cts.12256","title":"Lipidomic Profiling of Sinus Mucosa from Patients with Chronic Rhinosinusitis","year":2015,"lang":"en","type":"article","venue":"Clinical and Translational Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Center for Research Resources; National Institutes of Health","keywords":"Nasal polyps; Chronic rhinosinusitis; Sinusitis; Chromatography; Chemistry; Mass spectrometry; Electrospray ionization; Tandem mass spectrometry; Lipidomics; Gastroenterology; Medicine; Pathology; Internal medicine; Biochemistry; Immunology","score_opus":0.024922511039961515,"score_gpt":0.28159145640780847,"score_spread":0.25666894536784696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1697895173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99800205,0.0006443829,0.00046439026,0.00015240589,0.00028011014,0.00012505501,0.00002091637,0.0000108955755,0.0002997897],"genre_scores_gemma":[0.9992423,0.000013204886,0.0005756133,0.000025745216,0.000034434088,0.000002297342,0.00007451825,0.0000026030698,0.000029303601],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9992046,0.00007560264,0.00030482496,0.00020180327,0.000083637344,0.00012957136],"domain_scores_gemma":[0.99939656,0.00022073,0.00009013379,0.00009291449,0.00016711248,0.000032522723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005085675,0.00006524016,0.0001444806,0.00004354322,0.0001008451,0.000009891768,0.000114311755,0.000074123665,0.000040861156],"category_scores_gemma":[0.000103387705,0.000046591907,0.000028467244,0.00013840469,0.0010804912,0.0002293535,0.000019828416,0.00010691339,0.000028177263],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001511877,0.0002682727,0.8591897,0.000011257262,0.000068100504,0.0000013721581,0.00046503954,0.000056857156,0.06715734,0.003958629,0.00006190664,0.06724967],"study_design_scores_gemma":[0.003409802,0.00037448687,0.96004623,0.000036730125,0.000022289847,0.0000031167826,0.000015854095,0.000120478806,0.033976186,0.0009020632,0.0009937459,0.00009900961],"about_ca_topic_score_codex":0.000045512235,"about_ca_topic_score_gemma":0.000010812827,"teacher_disagreement_score":0.100856565,"about_ca_system_score_codex":0.000008054337,"about_ca_system_score_gemma":0.00035717696,"threshold_uncertainty_score":0.3981115},"labels":[],"label_agreement":null},{"id":"W1705803987","doi":"10.1186/s12931-015-0266-7","title":"Role of pulmonary microvascular endothelial cell apoptosis in murine sepsis-induced lung injury in vivo","year":2015,"lang":"en","type":"article","venue":"Respiratory Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Lawson Health Research Institute; Western University","funders":"Lawson Health Research Institute; Heart and Stroke Foundation of Canada","keywords":"Sepsis; Vascular permeability; Pathology; Annexin; Apoptosis; Lung; ARDS; Propidium iodide; Pulmonary edema; TUNEL assay; Medicine; Biology; Immunology; Programmed cell death; Internal medicine; Staining; Immunohistochemistry","score_opus":0.04218156913676774,"score_gpt":0.32054747554893137,"score_spread":0.27836590641216363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1705803987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901114,0.0044072485,0.0000013099583,0.000054100783,0.00011476221,0.0004977971,0.00000869834,0.0000197436,0.0047849067],"genre_scores_gemma":[0.99896836,0.00008968448,0.000009937532,0.000031012045,0.000039730934,0.0000865397,0.000011748675,0.000026227204,0.00073677325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961614,0.0020450193,0.00059091684,0.00035406076,0.00020057031,0.0006480177],"domain_scores_gemma":[0.9988787,0.000205996,0.000092092254,0.0005259482,0.00025120424,0.000046040186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003992996,0.00016951714,0.00037221197,0.0011556563,0.0000719741,0.0000133457,0.0004121182,0.00038069795,0.0002427017],"category_scores_gemma":[0.0003316758,0.00016746823,0.00009972945,0.0007739861,0.00017103623,0.00019093425,0.00024726303,0.00079909235,0.00029345407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013136198,0.00029210816,0.011123761,0.000058076246,0.000027691418,0.00001225933,0.0006537287,0.000010395092,0.9821478,0.000044321172,0.00071167346,0.0036045716],"study_design_scores_gemma":[0.0015797366,0.00026648527,0.0031565798,0.00007082925,0.000004888227,0.0000037170396,0.00080841227,0.000030939405,0.9604478,0.00006929795,0.033412274,0.00014904761],"about_ca_topic_score_codex":0.0006498383,"about_ca_topic_score_gemma":0.000034941615,"teacher_disagreement_score":0.032700602,"about_ca_system_score_codex":0.00024574058,"about_ca_system_score_gemma":0.00050526834,"threshold_uncertainty_score":0.6829156},"labels":[],"label_agreement":null},{"id":"W1709135008","doi":"10.3233/ch-2010-1331","title":"Vancomycin and to lesser extent tobramycin have vasomodulatory effects in experimental endotoxemia in the rat","year":2010,"lang":"en","type":"article","venue":"Clinical Hemorheology and Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Tobramycin; Antibiotics; Microcirculation; Vancomycin; Sepsis; Medicine; Intravital microscopy; Aminoglycoside; Pharmacology; Contractility; Lipopolysaccharide; Anesthesia; Internal medicine; Gentamicin; Microbiology; Biology; Bacteria; Staphylococcus aureus","score_opus":0.013461211085155914,"score_gpt":0.31054186300373327,"score_spread":0.29708065191857735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1709135008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960652,0.0016499044,0.00013491615,0.0006068195,0.0008098447,0.0005853357,4.1719983e-7,0.000015044993,0.00013251549],"genre_scores_gemma":[0.99862164,0.00004382673,0.000121868696,0.00090259017,0.000048995524,0.00006513166,0.000030156303,0.000008937514,0.00015685828],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982089,0.0006410767,0.00050727406,0.0003568999,0.000025652895,0.00026021755],"domain_scores_gemma":[0.99867094,0.0009645931,0.000089032124,0.00022777253,0.000022083368,0.00002556904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011474728,0.00015608735,0.00030754722,0.00013283378,0.00011434844,0.000013066885,0.00011753405,0.0004795192,0.000044785094],"category_scores_gemma":[0.00027815677,0.00012453555,0.00005128026,0.00008408308,0.00028541512,0.00011285524,0.00008104413,0.00070696016,0.000050967108],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003178882,0.00014990891,0.1523746,0.00001529769,0.000013827858,0.000013121311,0.0012266351,0.0000036188808,0.8309262,0.002300091,0.00013847233,0.0125203645],"study_design_scores_gemma":[0.0028872972,0.00020992204,0.760041,0.000032029206,0.000014810043,0.0001348473,0.00037671058,0.00005309558,0.23275207,0.0006409039,0.0026876782,0.00016961282],"about_ca_topic_score_codex":0.00005306713,"about_ca_topic_score_gemma":0.00026445262,"teacher_disagreement_score":0.60766643,"about_ca_system_score_codex":0.000019090443,"about_ca_system_score_gemma":0.00003405099,"threshold_uncertainty_score":0.5078412},"labels":[],"label_agreement":null},{"id":"W1725939292","doi":"10.25011/cim.v31i4.4789","title":"XMODULATION IN MICEAND MEN: IL-10 PRODUCING CELLS INBLOOD AND LYMPHOID TISSUE","year":2008,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Ex vivo; Immune system; Immunology; Peripheral blood mononuclear cell; Cytokine; Population; CD36; Spleen; Biology; Interleukin; Medicine; In vivo; Internal medicine; In vitro; Receptor","score_opus":0.0807547542502292,"score_gpt":0.30263822912930427,"score_spread":0.22188347487907506,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1725939292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99027354,0.0030881118,0.000018783687,0.005281773,0.0002928649,0.00026295765,0.0000021773592,0.00002319842,0.0007566269],"genre_scores_gemma":[0.9943842,0.0012707629,0.00009839241,0.0005059005,0.00014027368,0.0000102002205,0.00005796754,0.000008802006,0.003523481],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99839306,0.00040679253,0.00062608346,0.00034791898,0.000039597653,0.00018652451],"domain_scores_gemma":[0.999292,0.00028954723,0.00015228795,0.0001502956,0.000065393055,0.000050458515],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008580396,0.00015315959,0.00041040874,0.00010862251,0.0001446326,0.0000035427624,0.000060774375,0.00019762367,0.00014251214],"category_scores_gemma":[0.0010693851,0.00011273167,0.000019287712,0.00014445794,0.0047573755,0.00016944972,0.000055316385,0.00025707038,0.000058191665],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023972802,0.00008841783,0.061608225,0.00004354694,0.000060963135,0.000016190783,0.0045865444,0.000001801474,0.91471654,0.0004873389,0.007371093,0.010779606],"study_design_scores_gemma":[0.006690042,0.0014687151,0.48944965,0.0003318425,0.000058476682,0.00017062202,0.00051011454,0.00006885922,0.45461813,0.0035732794,0.042772945,0.00028734756],"about_ca_topic_score_codex":0.00011507995,"about_ca_topic_score_gemma":0.000010195568,"teacher_disagreement_score":0.46009842,"about_ca_system_score_codex":0.000011565453,"about_ca_system_score_gemma":0.00005605095,"threshold_uncertainty_score":0.9979511},"labels":[],"label_agreement":null},{"id":"W1726675821","doi":"10.4049/jimmunol.0901786","title":"Selective Down-Regulation of Neutrophil Mac-1 in Endotoxemic Hepatic Microcirculation via IL-10","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Alberta Children's Hospital Foundation; Fondation pour la Recherche Médicale; Canadian Child Health Clinician Scientist Program; Children's Hospital Foundation; Child and Family Research Institute","keywords":"Intravital microscopy; Integrin; Chemistry; Inflammation; Immunology; Chemotaxis; Cell biology; Integrin alpha M; Microcirculation; Biology; Receptor; Internal medicine; Medicine; Biochemistry; Flow cytometry","score_opus":0.00547626566242475,"score_gpt":0.21623314984588268,"score_spread":0.21075688418345792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1726675821","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935539,0.0044482187,0.00060105533,0.0006896212,0.00028196603,0.00019876217,0.0000013744569,0.0000090877575,0.00021602258],"genre_scores_gemma":[0.99925387,0.00040467188,0.00004060563,0.00005931606,0.000029414798,0.0000017018646,0.000014867448,0.000008092038,0.00018747532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99787086,0.0008829569,0.00086552324,0.00008779308,0.000051152678,0.00024170565],"domain_scores_gemma":[0.9983329,0.00028201312,0.0008920857,0.00021628384,0.0002696276,0.0000070917445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086604216,0.0001447722,0.00039269534,0.00039575642,0.00008809976,0.0000041776893,0.00027742886,0.0002420495,0.00018895602],"category_scores_gemma":[0.00013061486,0.000105604675,0.000116805466,0.00028459574,0.00016616547,0.00020220636,0.000024603676,0.0004585007,0.00007114235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023874945,0.00009742011,0.000294253,0.000005560316,0.00014569018,0.0000017451347,0.001223915,0.0002929124,0.9842332,0.00020606461,0.00011527721,0.010996465],"study_design_scores_gemma":[0.0018849565,0.000939301,0.24061431,0.000054799108,0.00006864941,0.00061296794,0.00015096106,0.000042720014,0.75283045,0.0021946807,0.0005125688,0.0000936064],"about_ca_topic_score_codex":0.0000608069,"about_ca_topic_score_gemma":0.000007943263,"teacher_disagreement_score":0.24032006,"about_ca_system_score_codex":0.0001250329,"about_ca_system_score_gemma":0.00010339351,"threshold_uncertainty_score":0.43064335},"labels":[],"label_agreement":null},{"id":"W1741900256","doi":"10.1089/jir.2015.0072","title":"The Role of Virus Infection in Deregulating the Cytokine Response to Secondary Bacterial Infection","year":2015,"lang":"en","type":"review","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Proinflammatory cytokine; Lymphocytic choriomeningitis; Immunology; Biology; Immune system; Virus; Cytokine; Innate immune system; Acquired immune system; Tumor necrosis factor alpha; Virology; Microbiology; CD8; Inflammation","score_opus":0.06044338120618601,"score_gpt":0.38536059464781003,"score_spread":0.324917213441624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1741900256","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25055265,0.7465628,0.0000220258,0.00025809312,0.0013489533,0.00091290934,0.000018537465,0.000010508392,0.00031352523],"genre_scores_gemma":[0.057601776,0.94122803,0.000007717552,0.0000069059924,0.00043723345,0.0000686592,0.00003309182,0.000055297944,0.0005612977],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98805267,0.0087292595,0.0020764759,0.00024213978,0.00032674463,0.0005727149],"domain_scores_gemma":[0.99408746,0.002825871,0.0012386008,0.0005475815,0.0012478792,0.00005261815],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.018968392,0.00033694034,0.001261695,0.001497966,0.00033896306,0.000106913,0.00068319286,0.0005622649,0.00019772768],"category_scores_gemma":[0.0033786055,0.00018619942,0.00047128578,0.0009829762,0.00029150114,0.00027090823,0.0004344956,0.0029614626,0.00015360002],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012319643,0.000111616995,0.000034401968,0.00043890797,0.00037740465,0.000009516411,0.0005447599,0.000014352629,0.16331162,0.000036282323,0.002094822,0.82070667],"study_design_scores_gemma":[0.0007898191,0.0024248988,0.0005133538,0.004358635,0.00009699326,0.00060639356,0.00015255176,0.0000023859764,0.02887902,0.00007995632,0.961938,0.00015797334],"about_ca_topic_score_codex":0.00059228035,"about_ca_topic_score_gemma":0.00041756986,"teacher_disagreement_score":0.9598432,"about_ca_system_score_codex":0.00085349847,"about_ca_system_score_gemma":0.0016194726,"threshold_uncertainty_score":0.99933875},"labels":[],"label_agreement":null},{"id":"W1747581834","doi":"10.1111/j.1600-0463.2010.02684.x","title":"Differential susceptibility to lethal endotoxaemia in mice deficient in IL‐1α, IL‐1β or IL‐1 receptor type I","year":2010,"lang":"en","type":"article","venue":"Apmis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipopolysaccharide; Cytokine; Receptor; Receptor antagonist; Biology; Endocrinology; Interleukin 10; Ratón; Interleukin; Internal medicine; Immunology; Chemistry; Antagonist; Medicine","score_opus":0.011942469082933675,"score_gpt":0.2545752438828776,"score_spread":0.24263277479994394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1747581834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963553,0.000074611446,0.000019827075,0.0004574579,0.0019648252,0.00046554592,0.00002726209,0.000045437962,0.00058972085],"genre_scores_gemma":[0.99688554,0.000026599777,0.00011630288,0.00011496874,0.000047549554,0.000041687264,0.0001261884,0.000017633007,0.0026235203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983239,0.00028096297,0.00046280504,0.0004005937,0.000053721255,0.00047800236],"domain_scores_gemma":[0.99915785,0.00025478684,0.00008258635,0.0003959715,0.000075975884,0.000032814467],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004350922,0.0002032016,0.00030702198,0.0002289031,0.00008377593,0.000019341136,0.00028133317,0.0004007785,0.004064976],"category_scores_gemma":[0.0006686736,0.0001726868,0.00006881946,0.0003437372,0.00010813723,0.00009974134,0.00013087467,0.000642195,0.0022140138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017388817,0.00019142745,0.0032958344,0.000015676822,0.000017127622,0.0000076296565,0.0013154694,0.0000029031307,0.9843655,0.0002112563,0.0018422253,0.006996023],"study_design_scores_gemma":[0.0014752343,0.0003071144,0.04376719,0.000035589444,0.000010769579,0.000026373194,0.00031115903,0.0000080484515,0.88936,0.000040041537,0.06439326,0.0002652013],"about_ca_topic_score_codex":0.00070322724,"about_ca_topic_score_gemma":0.0025831396,"teacher_disagreement_score":0.09500553,"about_ca_system_score_codex":0.00009717891,"about_ca_system_score_gemma":0.00013789895,"threshold_uncertainty_score":0.9985629},"labels":[],"label_agreement":null},{"id":"W1755096708","doi":"10.4049/jimmunol.0803864","title":"Cytokine Modulation of TLR Expression and Activation in Mesenchymal Stromal Cells Leads to a Proinflammatory Phenotype","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":310,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; McGill University; Jewish General Hospital","funders":"","keywords":"Proinflammatory cytokine; Immune system; TLR3; Cytokine; Chemokine; Cell biology; Mesenchymal stem cell; Innate immune system; Immunology; Biology; Inflammation; Chemistry; Toll-like receptor","score_opus":0.007785771259858666,"score_gpt":0.22742748986898878,"score_spread":0.21964171860913012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1755096708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722576,0.0008337136,0.00064459525,0.0008433865,0.00018062077,0.00018640596,7.0713025e-7,0.0000063618027,0.00007842073],"genre_scores_gemma":[0.9995511,0.00011135683,0.00016405493,0.00004433332,0.000026994734,0.0000013169484,0.0000036832191,0.0000059768836,0.00009118343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986405,0.00047017218,0.00057993934,0.00007864459,0.000050559236,0.00018020124],"domain_scores_gemma":[0.99905646,0.00015742313,0.00047504852,0.00016822595,0.00013282965,0.000010040642],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007682568,0.000111833826,0.00028085918,0.000308373,0.00006533622,0.000004455615,0.0001775541,0.00016846755,0.000037479433],"category_scores_gemma":[0.00013162222,0.00007765835,0.000042143492,0.00014627985,0.00009041722,0.00022594845,0.000041517567,0.00032019953,0.00001235802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033224984,0.000061242696,0.00020313736,0.0000056593603,0.00003055148,0.0000012866024,0.0015478772,0.0002849159,0.98544663,0.00018908491,0.00008482989,0.008822304],"study_design_scores_gemma":[0.0011673198,0.0010027826,0.14104493,0.000093563365,0.000015962138,0.00007032316,0.00027189797,0.000013991715,0.855747,0.0002434463,0.00026325817,0.000065510285],"about_ca_topic_score_codex":0.000012372089,"about_ca_topic_score_gemma":0.0000021608198,"teacher_disagreement_score":0.1408418,"about_ca_system_score_codex":0.000044614626,"about_ca_system_score_gemma":0.000065368564,"threshold_uncertainty_score":0.31668156},"labels":[],"label_agreement":null},{"id":"W1760516212","doi":"10.1177/153537020422901003","title":"Unraveling the Molecular Details Involved in the Intimate Link between the Immune and Neuroendocrine Systems","year":2004,"lang":"en","type":"review","venue":"Experimental Biology and Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Proinflammatory cytokine; Immune system; Circumventricular organs; Signal transduction; Neuroscience; Receptor; Inflammation; Innate immune system; Biology; Cell biology; Homeostasis; Endogeny; Immunology; Central nervous system; Endocrinology","score_opus":0.02875274095546431,"score_gpt":0.3314344514409512,"score_spread":0.30268171048548687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1760516212","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008734731,0.98731554,0.000012210706,0.00197041,0.0006103702,0.0012307538,0.0000071963395,0.000019612631,0.00009918579],"genre_scores_gemma":[0.14146954,0.8575433,0.0000019342172,0.00019517931,0.00016948608,0.00020134839,0.00033592162,0.00001901893,0.000064302236],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967693,0.0017014839,0.00077621156,0.0003437418,0.000041001906,0.00036826273],"domain_scores_gemma":[0.9983739,0.0008344188,0.00031497845,0.0004415508,0.00001863569,0.00001647568],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010489969,0.000400345,0.0010913021,0.00013185022,0.00037977338,0.00002011529,0.00044993256,0.00028110782,0.000024160008],"category_scores_gemma":[0.00012548141,0.00015915786,0.00010895426,0.0001813438,0.0011924517,0.0000398262,0.0002032632,0.00089676405,0.000028464683],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039806275,0.00013325554,0.00020655745,0.005138716,0.002528808,0.0002481751,0.011384166,0.0000032598327,0.11275737,0.036962062,0.00035895684,0.8298806],"study_design_scores_gemma":[0.0016211541,0.0006332341,0.00011784831,0.0043055997,0.0005408806,0.001001278,0.0028588027,0.0000015359793,0.005824466,0.000121133795,0.9826771,0.00029695107],"about_ca_topic_score_codex":0.0002635412,"about_ca_topic_score_gemma":0.0000022298411,"teacher_disagreement_score":0.98231816,"about_ca_system_score_codex":0.00003823165,"about_ca_system_score_gemma":0.00006173203,"threshold_uncertainty_score":0.64902693},"labels":[],"label_agreement":null},{"id":"W1763680449","doi":"10.1096/fasebj.29.1_supplement.558.3","title":"Toll‐like receptor 10 Expression in Chicken, Cattle, Pig, Dog, and Rat Lungs","year":2015,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Innate immune system; Receptor; Immunoelectron microscopy; Toll-like receptor; Immunohistochemistry; Cell biology; Immune system; Immunology; Molecular biology; Biochemistry","score_opus":0.01494512102165052,"score_gpt":0.24126250877163208,"score_spread":0.22631738774998156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1763680449","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99079376,0.0054781507,0.000060923012,0.0010981158,0.0010414504,0.000108139044,0.0000018035206,0.000015027053,0.0014026434],"genre_scores_gemma":[0.9892578,0.00043276857,0.00005443414,0.00016082205,0.000096904965,0.0000052732794,0.000021615235,0.000010603792,0.009959765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99881965,0.00052083255,0.00026935813,0.000107686916,0.00004717769,0.00023530771],"domain_scores_gemma":[0.9995065,0.00009354725,0.00013369777,0.00016948793,0.00006155279,0.00003523492],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010433727,0.00011374195,0.00015970167,0.00010704583,0.0002119424,0.000038735576,0.00017910796,0.00014392799,0.0005933022],"category_scores_gemma":[0.00013506766,0.000070061826,0.000040761013,0.0000791087,0.00011944864,0.00020323684,0.0000724324,0.00046801922,0.00050999847],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006064323,0.00002650095,0.0008259337,0.0000027913757,0.000020841451,0.0000054273596,0.0019017669,0.000009233464,0.9466509,0.000025873473,0.04634251,0.003581786],"study_design_scores_gemma":[0.0024184408,0.00019110698,0.0035120978,0.00009488316,0.000018196128,0.000949457,0.001308662,0.0000064122387,0.8833828,0.00019345409,0.107778214,0.00014628367],"about_ca_topic_score_codex":0.00001549001,"about_ca_topic_score_gemma":0.0000083701125,"teacher_disagreement_score":0.06326811,"about_ca_system_score_codex":0.000049898055,"about_ca_system_score_gemma":0.00009759441,"threshold_uncertainty_score":0.65551686},"labels":[],"label_agreement":null},{"id":"W178147368","doi":"10.1007/978-3-7091-6346-7_10","title":"Indomethacin and Cyclosporin a Inhibit in Vitro Ischemia-Induced Expression of ICAM-1 and Chemokines in Human Brain Endothelial Cells","year":2000,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; Institute for Biological Sciences","funders":"","keywords":"Chemokine; Ischemia; Pharmacology; Medicine; Blood–brain barrier; Inflammation; In vitro; Chemotaxis; Infiltration (HVAC); Immunology; ICAM-1; Brain ischemia; Cell adhesion molecule; Biology; Internal medicine; Central nervous system; Receptor; Biochemistry","score_opus":0.00691926881207713,"score_gpt":0.22903026903040846,"score_spread":0.22211100021833133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W178147368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99763656,0.00039031074,0.0000016280459,0.00011848735,0.000027766642,0.00020862711,0.0000051126026,0.000014988119,0.0015965382],"genre_scores_gemma":[0.99676055,0.0001275401,0.0000559955,0.000047783065,0.000009986811,0.000014203681,0.0000294838,0.000008920189,0.002945554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990035,0.00016249683,0.00039398955,0.00021353898,0.00002652263,0.00019991818],"domain_scores_gemma":[0.9996321,0.00014226191,0.00007238442,0.00012899547,0.000012080156,0.000012138227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036360114,0.00013517354,0.00029079727,0.00021137716,0.00003664189,0.000006320262,0.000065942804,0.00024796004,0.0005274098],"category_scores_gemma":[0.000043799293,0.00011628743,0.000026917704,0.00012426545,0.00009014715,0.00013419511,0.000048531936,0.00021303461,0.000016366017],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008685937,0.000070457194,0.00043562843,0.00002228064,0.0000063864245,0.000002867979,0.0006721268,4.6096562e-7,0.9885091,0.000026117557,0.0001156313,0.009270336],"study_design_scores_gemma":[0.0034814985,0.000078905265,0.0025922246,0.000049709826,0.0000031903387,0.000008685117,0.00019387469,0.0000018534838,0.9920396,0.00004827675,0.0013791502,0.00012302992],"about_ca_topic_score_codex":0.00026538226,"about_ca_topic_score_gemma":0.000019723811,"teacher_disagreement_score":0.009147306,"about_ca_system_score_codex":0.0000148174695,"about_ca_system_score_gemma":0.000017743421,"threshold_uncertainty_score":0.5774767},"labels":[],"label_agreement":null},{"id":"W1785914948","doi":"10.4049/jimmunol.1302412","title":"Cigarette Smoke Primes the Pulmonary Environment to IL-1α/CXCR-2–Dependent Nontypeable <i>Haemophilus influenzae</i>–Exacerbated Neutrophilia in Mice","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Neutrophilia; Haemophilus influenzae; Immunology; Alveolar macrophage; Lung; Medicine; Biology; Microbiology; Macrophage; Internal medicine; In vitro","score_opus":0.008623507226816809,"score_gpt":0.21106426404069575,"score_spread":0.20244075681387894,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1785914948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97873414,0.011841771,0.00014418233,0.00746553,0.000925948,0.00036921466,0.0000039202455,0.000017679007,0.0004976201],"genre_scores_gemma":[0.9957542,0.0018068545,0.000019247616,0.0012635385,0.00008735443,0.000013114331,0.000008721104,0.00002746041,0.0010195393],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963786,0.0018193881,0.00095307396,0.00019075452,0.00011243376,0.0005457708],"domain_scores_gemma":[0.9980614,0.0006026644,0.00059221877,0.0006129485,0.000104865285,0.0000258734],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024194806,0.00027666445,0.00049744354,0.0002637588,0.0002889153,0.000019192365,0.0010436025,0.00030605958,0.00024738145],"category_scores_gemma":[0.00022064878,0.00016453776,0.00013868003,0.00020764805,0.00033466803,0.00017455043,0.00030024783,0.0011002802,0.00046440744],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003059366,0.00013105241,0.00027786178,0.0000060450984,0.00037320616,0.000020070998,0.0015346772,0.0014401099,0.9818022,0.0002100124,0.0008822709,0.010263082],"study_design_scores_gemma":[0.0037279793,0.002152687,0.09527221,0.00020168327,0.000311058,0.0035703797,0.0013018289,0.000052323103,0.673078,0.00094298506,0.21886489,0.00052395643],"about_ca_topic_score_codex":0.00022595497,"about_ca_topic_score_gemma":0.000015465957,"teacher_disagreement_score":0.30872422,"about_ca_system_score_codex":0.00016409015,"about_ca_system_score_gemma":0.00009884192,"threshold_uncertainty_score":0.6709655},"labels":[],"label_agreement":null},{"id":"W1806335874","doi":"10.4049/jimmunol.180.10.6977","title":"Development of a Novel Noncompetitive Antagonist of IL-1 Receptor","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Sherbrooke; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Allosteric regulation; Antagonist; Interleukin 1 receptor antagonist; Agonist; Receptor; Proinflammatory cytokine; In vivo; Allosteric modulator; Cell biology; Competitive antagonist; Biology; Chemistry; Pharmacology; Receptor antagonist; Biophysics; Biochemistry; Inflammation; Immunology","score_opus":0.01862458928967027,"score_gpt":0.23667817979527725,"score_spread":0.21805359050560696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1806335874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943483,0.0031846608,0.0010526703,0.0002318845,0.00058659626,0.00008668338,0.000006567223,0.000004745487,0.0004979197],"genre_scores_gemma":[0.9966924,0.000989193,0.0018146484,0.000024521161,0.000020528367,0.0000013246485,0.000008654399,0.000008942045,0.0004397634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848664,0.0002842092,0.0009342674,0.000058323752,0.0000533185,0.00018322268],"domain_scores_gemma":[0.9980486,0.00028942717,0.0010961688,0.00019316142,0.0003653395,0.0000073166175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077964785,0.00011629487,0.00042993354,0.00017936785,0.00016359925,0.000001071885,0.00038009885,0.000154983,0.00022814095],"category_scores_gemma":[0.00013775082,0.00007645899,0.00011203749,0.00013152117,0.00065384555,0.00008463309,0.000082543,0.00032324114,0.00005432387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021543675,0.0002052233,0.00010291055,0.0000090810745,0.00055642764,0.0000017701759,0.006108476,0.0000050707013,0.98749506,0.0004740991,0.00022973072,0.0026577574],"study_design_scores_gemma":[0.0018806681,0.00050980115,0.010984654,0.00007355452,0.000039245704,0.0012298586,0.0015809592,6.061858e-7,0.9509914,0.000010086682,0.03262457,0.00007461232],"about_ca_topic_score_codex":0.000019006122,"about_ca_topic_score_gemma":0.0000029122928,"teacher_disagreement_score":0.0365037,"about_ca_system_score_codex":0.0000442621,"about_ca_system_score_gemma":0.00040326756,"threshold_uncertainty_score":0.31179073},"labels":[],"label_agreement":null},{"id":"W1818455479","doi":"10.3389/fimmu.2015.00426","title":"HIV-1 Structural Proteins Serve as PAMPs for TLR2 Heterodimers Significantly Increasing Infection and Innate Immune Activation","year":2015,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"TLR2; Innate immune system; Immune system; Cell biology; Biology; Pathogen-associated molecular pattern; Western blot; Chemistry; Immunology; Pattern recognition receptor; Gene; Biochemistry","score_opus":0.012074685082459015,"score_gpt":0.23578212429902953,"score_spread":0.22370743921657052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1818455479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886235,0.0028534278,0.0047802823,0.00044415184,0.0020213122,0.0010276574,0.000009595006,0.00008981331,0.00015027948],"genre_scores_gemma":[0.9971133,0.00015047527,0.0015334898,0.00006403714,0.00003592559,0.00017687502,0.0004254379,0.000030778552,0.00046970334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978511,0.0007190865,0.000531835,0.00037229122,0.0000434607,0.0004822643],"domain_scores_gemma":[0.9991271,0.00012301786,0.00029085184,0.0002772463,0.00015773794,0.000024028124],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008166108,0.00026360198,0.00044667185,0.0004997361,0.00022472929,0.000033456494,0.00015697026,0.0005229472,0.000022023052],"category_scores_gemma":[0.00069068297,0.00026109547,0.000077075194,0.00023600909,0.0003026326,0.0004987763,0.000092433846,0.00041997468,0.000041227373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008036778,0.00006261547,0.023784416,0.00004846572,0.00043316037,0.000003352446,0.002789955,0.00006712059,0.934106,0.0006458479,0.0009901399,0.029032141],"study_design_scores_gemma":[0.012811414,0.0019171876,0.17933688,0.00018824443,0.000106434265,0.0003311261,0.0037067875,0.00044942892,0.7571082,0.0066526216,0.036444932,0.0009467533],"about_ca_topic_score_codex":0.0014064534,"about_ca_topic_score_gemma":0.000025521256,"teacher_disagreement_score":0.17699781,"about_ca_system_score_codex":0.00024152269,"about_ca_system_score_gemma":0.00015141016,"threshold_uncertainty_score":0.99998415},"labels":[],"label_agreement":null},{"id":"W1825815388","doi":"10.4049/jimmunol.172.1.318","title":"Dexamethasone Inhibits IL-12p40 Production in Lipopolysaccharide-Stimulated Human Monocytic Cells by Down-Regulating the Activity of c-Jun N-Terminal Kinase, the Activation Protein-1, and NF-κB Transcription Factors","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of Ottawa; Children's Hospital of Eastern Ontario","funders":"","keywords":"Kinase; MAPK/ERK pathway; Biology; CD14; Transcription factor; Molecular biology; Protein kinase A; Cell biology; Transcription (linguistics); c-jun; p38 mitogen-activated protein kinases; Gene; Biochemistry","score_opus":0.015157015050242277,"score_gpt":0.2373090727278808,"score_spread":0.22215205767763851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1825815388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955806,0.0011975471,0.00029615493,0.002031629,0.00026182298,0.00061043364,0.0000032811483,0.000012387256,0.000006148217],"genre_scores_gemma":[0.99961525,0.00018829908,0.000015727936,0.000016515316,0.000030570547,0.000008968007,0.0000073527576,0.000015212147,0.00010208548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975667,0.0012119432,0.00070668827,0.00014870372,0.00008908198,0.00027687938],"domain_scores_gemma":[0.9982413,0.00029479124,0.0009965134,0.00029462902,0.00016289022,0.000009858065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001572737,0.0002128421,0.00036191137,0.0002107617,0.00042884648,0.000017540373,0.0003039225,0.0002530641,0.000020246647],"category_scores_gemma":[0.0002090497,0.00011419381,0.000092613336,0.00023610052,0.0005669301,0.00040826548,0.000052909632,0.0008798947,0.0000036424303],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015471079,0.00012936044,0.000052592313,0.00001750737,0.00016930171,6.679126e-7,0.0045386637,0.00072844676,0.9868729,0.00007018127,0.000013378329,0.0058599054],"study_design_scores_gemma":[0.0016480803,0.00064274063,0.0064019556,0.0001921187,0.00008915191,0.00016520022,0.0012782306,0.000015032355,0.98895633,0.0004293896,0.000068807094,0.00011298634],"about_ca_topic_score_codex":0.00085876125,"about_ca_topic_score_gemma":0.000055401804,"teacher_disagreement_score":0.0063493634,"about_ca_system_score_codex":0.00014420011,"about_ca_system_score_gemma":0.00009603088,"threshold_uncertainty_score":0.46566886},"labels":[],"label_agreement":null},{"id":"W1829785480","doi":"10.1097/ccm.0000000000001404","title":"Endotoxemia Following Multiple Trauma","year":2015,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Niagara Health System; Hôpital du Sacré-Cœur de Montréal; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; Université du Québec à Trois-Rivières","keywords":"Medicine; Trauma center; Organ dysfunction; Shock (circulatory); Prospective cohort study; Injury Severity Score; Multiple organ dysfunction syndrome; Major trauma; Internal medicine; Sepsis; Surgery; Retrospective cohort study; Emergency medicine; Poison control; Injury prevention","score_opus":0.033977164517405845,"score_gpt":0.3128645217606919,"score_spread":0.27888735724328606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1829785480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9435501,0.023626976,0.0010048004,0.004181274,0.003719117,0.00022286056,0.0000031990683,0.00017428349,0.023517394],"genre_scores_gemma":[0.9986626,0.0000047028325,0.00006774301,0.0003468122,0.00014683693,0.00001805712,0.0001233241,0.00001192634,0.00061801396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906206,0.00017084612,0.00024402296,0.00017226329,0.000064085754,0.00028670588],"domain_scores_gemma":[0.99909955,0.00046081858,0.000018543904,0.0002051378,0.00015923883,0.00005672959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030016334,0.00011978082,0.00024262187,0.000076251585,0.00009812459,0.000005471719,0.00011969476,0.00016384025,0.00032088583],"category_scores_gemma":[0.0037504162,0.00009181619,0.00006916342,0.000088926296,0.00025832705,0.00008977541,0.000033443663,0.00021919246,0.00059124554],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008138829,0.000089393914,0.0066755465,0.00015022448,0.00012813338,0.00022954248,0.016060568,0.0000020631917,0.85403675,0.008338339,0.03504688,0.078428686],"study_design_scores_gemma":[0.009055155,0.0014882507,0.0030490195,0.00026285523,0.00023004334,0.00018969705,0.035684153,0.000017462877,0.56161416,0.0007955228,0.3872157,0.0003979808],"about_ca_topic_score_codex":0.00006610372,"about_ca_topic_score_gemma":0.000006443144,"teacher_disagreement_score":0.35216883,"about_ca_system_score_codex":0.00005772105,"about_ca_system_score_gemma":0.00005058881,"threshold_uncertainty_score":0.7599462},"labels":[],"label_agreement":null},{"id":"W1830574855","doi":"10.1093/ajcn/71.3.835","title":"Nutritional and metabolic effects of the endotoxin bacterial lipopolysaccharide in orally and parenterally fed rats","year":2000,"lang":"en","type":"article","venue":"American Journal of Clinical Nutrition","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Nutrition Society; University of Toronto","funders":"","keywords":"Lipopolysaccharide; Internal medicine; Endocrinology; Wasting; Parenteral nutrition; Medicine; Tumor necrosis factor alpha; Biology","score_opus":0.008983107683977252,"score_gpt":0.28049734395322723,"score_spread":0.27151423626925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1830574855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965413,0.0020763075,0.0000067896376,0.00084160693,0.00032644716,0.00018355265,0.0000055884257,0.0000032474998,0.000015113385],"genre_scores_gemma":[0.9946266,0.0048476006,0.00021174803,0.00016901012,0.00009946308,0.000006575916,0.0000062677645,0.0000058012583,0.000026980053],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99781334,0.00093340443,0.00095193816,0.00011143735,0.00005770029,0.00013214782],"domain_scores_gemma":[0.9984956,0.00076854014,0.000536835,0.00009248026,0.000080023376,0.000026525515],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058275496,0.00009856529,0.00053209194,0.00009669796,0.000048289847,0.0000124722765,0.00011343723,0.00008967756,0.00009201084],"category_scores_gemma":[0.0003250805,0.000070226866,0.00014349127,0.000102258375,0.00047602018,0.00016954432,0.000022926375,0.0003191807,0.0000037771279],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009982128,0.0007342322,0.00970669,0.000055882312,0.00016765886,0.000011908293,0.00018782156,8.359158e-7,0.8264381,0.0001945951,0.00020592092,0.15231422],"study_design_scores_gemma":[0.015756318,0.0036191712,0.5757761,0.0010000431,0.00016583841,0.0005077598,0.00017325938,0.00000776431,0.38960776,0.0010976029,0.012076693,0.00021172565],"about_ca_topic_score_codex":0.000029742163,"about_ca_topic_score_gemma":0.0000073906212,"teacher_disagreement_score":0.56606936,"about_ca_system_score_codex":0.000007301776,"about_ca_system_score_gemma":0.000056832327,"threshold_uncertainty_score":0.28637686},"labels":[],"label_agreement":null},{"id":"W1833951784","doi":"10.4049/jimmunol.173.3.2031","title":"Different Domains of <i>Pseudomonas aeruginosa</i> Exoenzyme S Activate Distinct TLRs","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Internalization; Cell biology; TLR2; Proinflammatory cytokine; TLR4; CD14; Peptidoglycan; Microbiology; Signal transduction; Monocyte; Biology; Chemistry; Receptor; Inflammation; Biochemistry; Immunology; Enzyme","score_opus":0.008502561902509097,"score_gpt":0.22040752676007574,"score_spread":0.21190496485756666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1833951784","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891926,0.006751684,0.0009573741,0.001388971,0.0010284052,0.00013592199,0.0000033621125,0.000015480666,0.0005261939],"genre_scores_gemma":[0.9984227,0.001117006,0.000036633584,0.00006850462,0.000048085505,0.0000024108626,0.0000080621285,0.000016374435,0.00028024326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980141,0.00063029607,0.00084200554,0.00009660025,0.00007145885,0.0003455615],"domain_scores_gemma":[0.9980182,0.0004207136,0.0009818389,0.00038202739,0.00018159582,0.000015627407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006708895,0.0002092346,0.0005331434,0.00019879319,0.00014437905,0.0000060855446,0.00060474087,0.00022204293,0.00037291294],"category_scores_gemma":[0.00018247399,0.00012378677,0.00022574565,0.00014319735,0.0005654991,0.00015282069,0.00012669334,0.0006376022,0.000093520015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002759124,0.0001876784,0.00020512241,0.000009521084,0.0006300117,0.000011095044,0.001079067,0.000046453835,0.99039686,0.002356833,0.00026815868,0.0020500605],"study_design_scores_gemma":[0.0035780852,0.0010407538,0.026597701,0.00009472039,0.00015194537,0.0016802411,0.0005818764,2.0489894e-7,0.958478,0.0014639273,0.0061983666,0.00013420542],"about_ca_topic_score_codex":0.00006991062,"about_ca_topic_score_gemma":0.000011864964,"teacher_disagreement_score":0.031918902,"about_ca_system_score_codex":0.00009722646,"about_ca_system_score_gemma":0.00016250522,"threshold_uncertainty_score":0.5047878},"labels":[],"label_agreement":null},{"id":"W1833987578","doi":"10.4049/jimmunol.0900986","title":"IDO Activates Regulatory T Cells and Blocks Their Conversion into Th17-Like T Cells","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":480,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Cancer Institute; National Institutes of Health; York University","keywords":"Cell biology; Chemistry; Biology","score_opus":0.0049357817602235345,"score_gpt":0.1968074682164444,"score_spread":0.19187168645622088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1833987578","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816786,0.015137524,0.00008182071,0.0016577075,0.0011207163,0.00011615861,0.0000012098097,0.000018479497,0.00018777093],"genre_scores_gemma":[0.9949533,0.0035995753,0.00003932219,0.00041162118,0.000048921225,5.534338e-7,0.000003347665,0.000009946614,0.0009334449],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99843484,0.00064189994,0.0004899019,0.000109087625,0.000042717344,0.0002815727],"domain_scores_gemma":[0.9986184,0.00038919479,0.0005241857,0.0003071688,0.00014397624,0.00001707852],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008968906,0.00019060285,0.00036631135,0.00018808666,0.00028491596,0.00001320585,0.00038632276,0.00030443823,0.0001912893],"category_scores_gemma":[0.00003595181,0.000116180534,0.00010750158,0.00009908306,0.00039627057,0.0002053017,0.000083832514,0.00060651626,0.00008856706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016469759,0.000054271284,0.00001873306,0.000004287348,0.00023755418,0.000004631869,0.002143375,0.000009036862,0.9804319,0.00008934937,0.003129295,0.012230601],"study_design_scores_gemma":[0.0012962283,0.00096013624,0.0031936085,0.00004293171,0.00007111031,0.00061530864,0.0013481097,0.0000032058203,0.9541831,0.00064111874,0.037521627,0.00012354368],"about_ca_topic_score_codex":0.00001823427,"about_ca_topic_score_gemma":8.4074816e-7,"teacher_disagreement_score":0.03439233,"about_ca_system_score_codex":0.00005107312,"about_ca_system_score_gemma":0.000079975405,"threshold_uncertainty_score":0.47377047},"labels":[],"label_agreement":null},{"id":"W1849265732","doi":"10.4049/jimmunol.176.6.3742","title":"Modulation of Neonatal Microbial Recognition: TLR-Mediated Innate Immune Responses Are Specifically and Differentially Modulated by Human Milk","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Cardiff University; Wellcome Trust","keywords":"TLR2; TLR4; TLR3; Innate immune system; Biology; TLR5; Immune system; Cell biology; Stimulation; Toll-like receptor; Breast milk; Signal transduction; Pattern recognition receptor; Immunology; Endocrinology; Biochemistry","score_opus":0.010236023200331885,"score_gpt":0.21165209526740833,"score_spread":0.20141607206707646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1849265732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860166,0.011886236,0.0006354762,0.000692476,0.0004764205,0.00017871482,0.00005132496,0.000020886344,0.00004191386],"genre_scores_gemma":[0.998293,0.00073029136,0.000044629684,0.00002422955,0.000055468186,0.0000019458366,0.00027298913,0.00002127667,0.00055618316],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971158,0.001171919,0.0012108261,0.0001396361,0.000074184834,0.00028767012],"domain_scores_gemma":[0.99753547,0.00040011376,0.0013713881,0.0002573584,0.0004230836,0.0000125994575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008104062,0.0002233319,0.0005335417,0.00031078668,0.0002496298,0.000016482052,0.00032124095,0.00036868505,0.00025018665],"category_scores_gemma":[0.00016936239,0.00016553255,0.00013165164,0.00018081152,0.0005951844,0.00019504159,0.00009340359,0.00053298613,0.000038958566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048376257,0.00012773268,0.00028799806,0.000010504524,0.00035153204,0.000007937933,0.00033506117,0.000006569548,0.9904684,0.0000424524,0.00069447135,0.0028297298],"study_design_scores_gemma":[0.0037317816,0.00068501674,0.21173568,0.00010386423,0.00012341558,0.0008573002,0.00036171402,0.00000836847,0.7794605,0.0006040078,0.0021394396,0.00018894403],"about_ca_topic_score_codex":0.00012650358,"about_ca_topic_score_gemma":0.0000139562935,"teacher_disagreement_score":0.21144769,"about_ca_system_score_codex":0.00003909347,"about_ca_system_score_gemma":0.000058968697,"threshold_uncertainty_score":0.6750221},"labels":[],"label_agreement":null},{"id":"W1856321184","doi":"10.4049/jimmunol.0802442","title":"The Immunostimulatory Activity of Unmethylated and Methylated CpG Oligodeoxynucleotide Is Dependent on Their Ability To Colocalize with TLR9 in Late Endosomes","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Arbutus Biopharma (Canada); Arthritis Research Centre of Canada; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"TLR9; Colocalization; CpG site; CpG Oligodeoxynucleotide; DNA methylation; Endosome; Biology; DNA; Molecular biology; Methylation; Toll-Like Receptor 9; Cell biology; Gene; Biochemistry; Gene expression; Intracellular","score_opus":0.006351822160567649,"score_gpt":0.2307857867030808,"score_spread":0.22443396454251316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1856321184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947395,0.0023623141,0.000043874363,0.0019384451,0.00045821763,0.0003454879,0.0000058539517,0.000011448578,0.00009490335],"genre_scores_gemma":[0.99896085,0.00072071166,0.0000223671,0.00012285488,0.000009532438,0.0000067336114,0.0000011637741,0.000016773218,0.00013902913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972917,0.0014334817,0.0006849301,0.00015441311,0.00007827252,0.00035724166],"domain_scores_gemma":[0.9961267,0.0024104882,0.0006367757,0.00055205624,0.00025254686,0.000021451286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027059831,0.0002289807,0.00052746653,0.00023089495,0.0002521711,0.000013829747,0.00052746554,0.0002915532,0.000093120405],"category_scores_gemma":[0.00050195854,0.000114900984,0.00008901995,0.00025706567,0.00075160945,0.00012836946,0.00014326842,0.0012318472,0.000021748865],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011753603,0.000120568,0.00063406996,0.00000602871,0.0004699041,0.000004562641,0.0024073722,0.0002030951,0.97078234,0.00019610047,0.000031965516,0.013390395],"study_design_scores_gemma":[0.0022442895,0.0015446723,0.118421234,0.000048102283,0.000063686304,0.0001795973,0.00038086722,0.000021673412,0.87491167,0.0004869847,0.0015713829,0.0001258302],"about_ca_topic_score_codex":0.00023530677,"about_ca_topic_score_gemma":0.00015117732,"teacher_disagreement_score":0.11778716,"about_ca_system_score_codex":0.00005590143,"about_ca_system_score_gemma":0.00015340486,"threshold_uncertainty_score":0.53518313},"labels":[],"label_agreement":null},{"id":"W1857069017","doi":"10.1002/9780470015902.a0001132.pub2","title":"Immune System: Early Ontogeny","year":2015,"lang":"en","type":"other","venue":"Encyclopedia of Life Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Immune system; Biology; Immunology; Immunity; Gestation; Antigen; Acquired immune system; Innate immune system; Innate lymphoid cell; Ontogeny; Pregnancy; Genetics","score_opus":0.013721522258768128,"score_gpt":0.2413386509292976,"score_spread":0.22761712867052947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1857069017","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0041318643,0.055822067,0.0000103051725,0.000051961855,0.0028852385,0.00026260302,0.000037829195,0.00015609409,0.93664205],"genre_scores_gemma":[0.018593922,0.0015441035,0.0001423593,0.0000152130215,0.00024051365,0.000020281605,0.00007884474,0.00009273626,0.979272],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984744,0.00026001682,0.0004959181,0.00030932605,0.00013658313,0.00032372642],"domain_scores_gemma":[0.99892455,0.00007684521,0.00055293454,0.0003429009,0.000070940056,0.000031852935],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00087216805,0.00023292932,0.0005303863,0.0004003549,0.00010487194,0.000010230393,0.0006227211,0.00043674622,0.0016730098],"category_scores_gemma":[0.00023413029,0.00018324927,0.00009912961,0.00031386613,0.00063929247,0.000101575475,0.0001028029,0.00018464489,0.00229694],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008664505,0.000041533407,0.00043824606,0.00014398662,0.00015695237,0.000002853306,0.000596865,0.0000012040507,0.003942589,0.0013244617,0.99192214,0.001342503],"study_design_scores_gemma":[0.0003939814,0.00020262676,0.000649577,0.00027307554,0.00004118997,0.00000918362,0.00047425556,5.86771e-7,0.0014803815,0.000017847065,0.99622726,0.0002300144],"about_ca_topic_score_codex":0.0014407344,"about_ca_topic_score_gemma":0.000054125027,"teacher_disagreement_score":0.054277964,"about_ca_system_score_codex":0.000028481047,"about_ca_system_score_gemma":0.0006759018,"threshold_uncertainty_score":0.9992396},"labels":[],"label_agreement":null},{"id":"W1878522445","doi":"10.1111/j.1600-065x.2010.00978.x","title":"Use of defined TLR ligands as adjuvants within human vaccines","year":2010,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":435,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Vaccine adjuvant; Immune system; Biology; Immunology; Acquired immune system; Vaccination; Computational biology","score_opus":0.13134471478881046,"score_gpt":0.36690050356425447,"score_spread":0.235555788775444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1878522445","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012783632,0.9949701,0.0000048012353,0.000023086106,0.0013204427,0.0018489633,0.000027387192,0.00011264806,0.00041423805],"genre_scores_gemma":[0.000044898745,0.99322504,0.00013578251,0.00005638759,0.00006277788,0.00029934486,0.0008598181,0.000060983406,0.0052549457],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.994058,0.0014033838,0.0031632658,0.00069768523,0.00007966467,0.00059799815],"domain_scores_gemma":[0.9949998,0.0008315961,0.0025217247,0.0014444757,0.00016651659,0.000035855115],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013896574,0.00092668296,0.0050906753,0.00036710102,0.00026277214,0.000049768703,0.0010121977,0.0024392833,0.0017014784],"category_scores_gemma":[0.0037272873,0.0005683967,0.001523136,0.00048631206,0.00037604256,0.00023859998,0.0003944301,0.0020683368,0.005569632],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007130968,0.00014308577,0.0000017150958,0.0023537555,0.00028661898,0.000008388686,0.000047271318,2.4807555e-8,0.024874575,0.0016971007,0.000542025,0.9699741],"study_design_scores_gemma":[0.0003787067,0.0004759684,0.000022299902,0.010170591,0.00080022134,0.00026375425,0.0000058873557,3.9742115e-8,0.00435071,0.00011955106,0.98284113,0.00057111686],"about_ca_topic_score_codex":0.00004889168,"about_ca_topic_score_gemma":0.0000071701165,"teacher_disagreement_score":0.98229915,"about_ca_system_score_codex":0.000059355447,"about_ca_system_score_gemma":0.00021685973,"threshold_uncertainty_score":0.99967676},"labels":[],"label_agreement":null},{"id":"W1881422607","doi":"10.1016/j.lungcan.2015.06.009","title":"IL1B gene polymorphisms, age and the risk of non-small cell lung cancer in a Chinese population","year":2015,"lang":"en","type":"article","venue":"Lung Cancer","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministry of Science and Technology; Ministry of Health, British Columbia; Fudan University; Research and Development; National Natural Science Foundation of China; National Science Foundation","keywords":"Medicine; Lung cancer; Oncology; Chinese population; Internal medicine; Gene; Genetics; Genotype; Biology","score_opus":0.006080338920320681,"score_gpt":0.25174813654559786,"score_spread":0.24566779762527718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1881422607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9493431,0.049136665,0.00007023338,0.00023492718,0.00051790616,0.0003530442,0.000026036088,0.000011435149,0.00030666945],"genre_scores_gemma":[0.99583995,0.0023124104,0.000025965652,0.000066370216,0.000055508335,0.00009659468,0.000036747053,0.000011935385,0.0015545083],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99913436,0.00024546648,0.00026245663,0.00014849145,0.000032550342,0.00017668476],"domain_scores_gemma":[0.99949163,0.000074365555,0.00019303702,0.00018289701,0.000044930846,0.000013109093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038871088,0.000121107885,0.00024283623,0.0000848058,0.00006310094,0.000008000516,0.000102621445,0.00013569315,0.000093380695],"category_scores_gemma":[0.000041587784,0.000079394544,0.0000467103,0.00014080296,0.00008941707,0.000079155354,0.00005013958,0.00017860137,0.0000047060953],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021361692,0.000042729942,0.77352166,0.00007241694,0.00020689683,0.0000056861704,0.00803696,0.0011849041,0.20793612,0.00008795205,0.0012121436,0.0055563482],"study_design_scores_gemma":[0.0066646007,0.000036900932,0.9548421,0.000097265394,0.00017546842,0.0000059924328,0.00010170582,0.0023862352,0.0345663,0.000105151405,0.00082828925,0.00019001482],"about_ca_topic_score_codex":0.02353351,"about_ca_topic_score_gemma":0.0023774947,"teacher_disagreement_score":0.18132041,"about_ca_system_score_codex":0.00009362575,"about_ca_system_score_gemma":0.00009034623,"threshold_uncertainty_score":0.98296887},"labels":[],"label_agreement":null},{"id":"W1881442674","doi":"10.1074/jbc.m115.657874","title":"Structural Basis for Antibody Recognition of Lipid A","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"Canadian Institutes of Health Research","keywords":"Lipid A; Antibody; Monoclonal antibody; Antigen; In vitro; Oligosaccharide; DNA; Chemistry; Biochemistry; Sepsis; Biology; Lipopolysaccharide; Immunology","score_opus":0.048525986393241696,"score_gpt":0.2891316219857399,"score_spread":0.2406056355924982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1881442674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980981,0.0008947671,0.00016989048,0.00013518255,0.00024570755,0.00005229868,0.000016945476,0.0000061697956,0.00038097464],"genre_scores_gemma":[0.999235,0.000063961146,0.0003359407,0.000022003098,0.00013469748,0.000001631511,0.00008273106,0.00000314958,0.00012093198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993028,0.00006303811,0.00042003475,0.00006834699,0.000027240656,0.00011852883],"domain_scores_gemma":[0.99898756,0.00015871714,0.00042665066,0.00006543284,0.00033985634,0.000021764941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042713954,0.0000774948,0.00024624012,0.000025961352,0.000027543148,0.0000040421787,0.00012048014,0.00024330275,0.00023426974],"category_scores_gemma":[0.0009925367,0.00005049295,0.00014839097,0.000047427853,0.00009488445,0.00006113881,0.000020602973,0.00014919114,0.000009099936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013257789,0.000029362676,0.0006228668,0.000021204083,0.000065732376,0.0000013207482,0.000055554596,0.0000014781862,0.9927044,0.0000043694704,0.0006471994,0.004520766],"study_design_scores_gemma":[0.0010895143,0.00046957209,0.001642944,0.000043589873,0.00002276614,0.00023537193,0.000229859,0.000003075116,0.99072343,0.0003978461,0.0050725066,0.000069518224],"about_ca_topic_score_codex":0.0000011545034,"about_ca_topic_score_gemma":2.950497e-8,"teacher_disagreement_score":0.004451248,"about_ca_system_score_codex":0.000025480736,"about_ca_system_score_gemma":0.00006874527,"threshold_uncertainty_score":0.25650895},"labels":[],"label_agreement":null},{"id":"W1882275176","doi":"10.4141/cjas2011-002","title":"cDNA cloning, characterization and expression analysis of toll-like receptor 4 gene in goose","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Animal Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Goose; Complementary DNA; Biology; Gene; Cloning (programming); Rapid amplification of cDNA ends; Signal peptide; Amino acid; Molecular biology; Messenger RNA; Receptor; Toll-like receptor; Gene expression; Transmembrane domain; Molecular cloning; Genetics; Peptide sequence; Innate immune system","score_opus":0.016066151200284044,"score_gpt":0.22130565849287356,"score_spread":0.20523950729258952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1882275176","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991709,0.00036550075,0.00007968183,0.000035029083,0.00016459961,0.00003349052,0.0000053792664,0.0000011333029,0.00014427792],"genre_scores_gemma":[0.9997135,0.000051671843,0.00014597287,0.000023155424,0.00000759551,3.9849235e-7,0.0000059910603,0.000002062434,0.000049659557],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99934334,0.000066981665,0.00028706278,0.00009223615,0.000035662764,0.00017474318],"domain_scores_gemma":[0.9994845,0.000014700309,0.00024358025,0.000074255375,0.00011947621,0.00006353408],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006166812,0.000052868403,0.00016317455,0.0008726488,0.000100717414,0.000012118847,0.00017573989,0.00006069973,0.00030386946],"category_scores_gemma":[0.00010198255,0.00004499782,0.000036451096,0.00064497255,0.0002808655,0.0003631587,0.000013979509,0.000093133676,0.000003861539],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012398837,0.000006917349,0.02502901,0.0000014741763,0.000021251815,0.0000054203583,0.0018558039,9.3601585e-7,0.9713063,0.00008821426,0.00001560065,0.0015450689],"study_design_scores_gemma":[0.00012211893,0.00015813374,0.53341895,0.000021806798,0.000024322255,0.000017296707,0.00010910688,0.000011565941,0.4653504,0.0000027663023,0.00072794803,0.00003561652],"about_ca_topic_score_codex":0.0010812103,"about_ca_topic_score_gemma":0.0007830772,"teacher_disagreement_score":0.50838995,"about_ca_system_score_codex":0.000053670185,"about_ca_system_score_gemma":0.00046101314,"threshold_uncertainty_score":0.33271575},"labels":[],"label_agreement":null},{"id":"W1882975800","doi":"10.1002/art.38520","title":"Brief Report: A Polymorphism in <i>TLR2</i> Is Associated With Arterial Thrombosis in a Multiethnic Population of Patients With Systemic Lupus Erythematosus","year":2014,"lang":"en","type":"article","venue":"Arthritis & Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute on Minority Health and Health Disparities; National Center for Research Resources; Weill Cornell Medical College; National Institutes of Health; Hospital for Special Surgery; National Institute of Arthritis and Musculoskeletal and Skin Diseases; University of Texas Health Science Center at Houston; National Center for Advancing Translational Sciences; University of Alabama; McGill University Health Centre; McGill University; Canadian Institutes of Health Research; Lupus Research Alliance; Rheumatology Research Foundation; Northwestern University; University of Alabama at Birmingham; Johns Hopkins University; Arthritis Foundation; University of California, San Francisco; Alliance for Lupus Research; American College of Rheumatology Research and Education Foundation","keywords":"Thrombosis; Medicine; Population; Polymorphism (computer science); Immunology; Internal medicine; Cardiology; Genotype; Genetics; Biology; Gene; Environmental health","score_opus":0.005084415518894852,"score_gpt":0.19916164649097337,"score_spread":0.19407723097207852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1882975800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99809444,0.000682074,0.000051740073,0.0000908989,0.0004610503,0.00049201975,0.000014402501,0.00004561033,0.00006778376],"genre_scores_gemma":[0.9991954,0.00009642239,0.000028451297,0.00004120218,0.0000029969292,0.00007029497,0.00049142836,0.00002809512,0.000045709985],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9974842,0.00061826024,0.0010013536,0.00038288397,0.00008197556,0.00043130794],"domain_scores_gemma":[0.99858564,0.00020794164,0.0007029793,0.00036710672,0.00011835454,0.000017960912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043411154,0.00023837999,0.0008745228,0.00031864582,0.00006999401,0.000009158804,0.00012988229,0.0003847131,0.00007582456],"category_scores_gemma":[0.00024716352,0.00020928848,0.00005719621,0.00030716916,0.00019510629,0.00020183573,0.00004045947,0.00022863704,0.0000281601],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011445673,0.00028384294,0.9878584,0.000040634917,0.00010784749,0.00002790767,0.0017880686,0.000008853674,0.006892239,0.00028015758,0.00010009255,0.0014674002],"study_design_scores_gemma":[0.019737098,0.00073002296,0.9704712,0.0019676534,0.000029873012,0.0026651241,0.00018038979,0.000025369764,0.003497938,0.00015259258,0.00015077875,0.00039196602],"about_ca_topic_score_codex":0.0015644672,"about_ca_topic_score_gemma":0.003151362,"teacher_disagreement_score":0.01859253,"about_ca_system_score_codex":0.000075877164,"about_ca_system_score_gemma":0.00006431237,"threshold_uncertainty_score":0.8534537},"labels":[],"label_agreement":null},{"id":"W1888210466","doi":"10.1186/s13054-015-0981-y","title":"Common variants of NFE2L2 gene predisposes to acute respiratory distress syndrome in patients with severe sepsis","year":2015,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Instituto de Salud Carlos III; Fundación Ramón Areces","keywords":"ARDS; Medicine; Single-nucleotide polymorphism; Odds ratio; Linkage disequilibrium; Sepsis; Population; Internal medicine; Bioinformatics; Genetics; Gene; Genotype; Biology; Lung","score_opus":0.014857791496099023,"score_gpt":0.2667135313463517,"score_spread":0.25185573985025267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1888210466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980687,0.0005451115,0.000025955347,0.00011135245,0.00019724369,0.00022544047,0.000273128,0.000020688629,0.0005323662],"genre_scores_gemma":[0.9994802,9.635091e-7,0.000050854567,0.000113274415,0.0000061780074,0.00002028574,0.0002614502,0.000012117401,0.0000547029],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99905634,0.00020006596,0.00025355024,0.00018436552,0.00006619328,0.00023946905],"domain_scores_gemma":[0.99929136,0.00009092884,0.000032122738,0.00026353984,0.00027664227,0.00004540536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009370023,0.0001206761,0.00025578582,0.0000969258,0.00003899892,0.000008892941,0.00014894645,0.00016105108,0.000049439965],"category_scores_gemma":[0.00020715929,0.00010101514,0.00003153421,0.00013787426,0.000122057536,0.00012798437,0.00008346471,0.00013983209,0.00007887501],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014240806,0.001337291,0.8916377,0.0007059745,0.00051567977,0.00039553095,0.010971261,0.000081614,0.060401663,0.003201521,0.0035115543,0.01299943],"study_design_scores_gemma":[0.0029377386,0.0019721095,0.9511612,0.00019417077,0.000095262825,0.000027298387,0.0009740467,8.5670507e-7,0.04100481,0.00005612265,0.0013141052,0.00026225267],"about_ca_topic_score_codex":0.000033004,"about_ca_topic_score_gemma":0.00001989105,"teacher_disagreement_score":0.059523553,"about_ca_system_score_codex":0.000065968066,"about_ca_system_score_gemma":0.000065732966,"threshold_uncertainty_score":0.4119278},"labels":[],"label_agreement":null},{"id":"W1889825709","doi":"10.4049/jimmunol.179.10.7110","title":"Induction of IRAK-M Is Associated with Lipopolysaccharide Tolerance in a Human Endotoxemia Model","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipopolysaccharide; Monocyte; In vivo; Whole blood; Cytokine; Tumor necrosis factor alpha; In vitro; Pharmacology; Ex vivo; Internal medicine; Endocrinology; Biology; Medicine; Immunology; Biochemistry","score_opus":0.01339506933328175,"score_gpt":0.24690527211868968,"score_spread":0.23351020278540793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1889825709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99639714,0.0019098258,0.00087801536,0.00023966341,0.0002108469,0.00011025282,0.0000012485951,0.000007742439,0.00024526258],"genre_scores_gemma":[0.9992723,0.00017665928,0.000034949375,0.00007871365,0.000017190025,0.0000012808372,0.0000037229197,0.000010783689,0.0004044021],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985291,0.00031950366,0.0007500306,0.00007429991,0.00005574057,0.00027136112],"domain_scores_gemma":[0.99845237,0.00022092745,0.00089342776,0.00020357112,0.00022239493,0.0000073049855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017860153,0.0001236319,0.00036855525,0.00031802003,0.00010081118,0.0000031103543,0.00030001212,0.00025378866,0.00006877665],"category_scores_gemma":[0.00013715882,0.00008108868,0.000069992384,0.00018667908,0.00028110345,0.0001670787,0.000036710157,0.0006622884,0.000008299533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022007027,0.00009962683,0.0005019075,0.0000032654848,0.00025417935,0.0000066350676,0.0026384473,0.0003887919,0.99190223,0.0003995039,0.0000916767,0.0015130162],"study_design_scores_gemma":[0.0023429194,0.0006790059,0.01273251,0.00012293445,0.000059273447,0.00046639377,0.0007496896,0.00002699103,0.9821885,0.0004028748,0.00013877891,0.00009009791],"about_ca_topic_score_codex":0.00009336414,"about_ca_topic_score_gemma":0.000051995135,"teacher_disagreement_score":0.012230603,"about_ca_system_score_codex":0.00009429389,"about_ca_system_score_gemma":0.00010652839,"threshold_uncertainty_score":0.33067003},"labels":[],"label_agreement":null},{"id":"W1891734594","doi":"10.3748/wjg.v12.i14.2149","title":"Role of Toll-like receptors in health and diseases of gastrointestinal tract","year":2006,"lang":"en","type":"review","venue":"World Journal of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; National Research Council Canada","funders":"","keywords":"Immune system; Innate immune system; Biology; Gastrointestinal tract; Toll-like receptor; Pattern recognition receptor; Immunology; Receptor; Acquired immune system; Innate lymphoid cell; Pathogenic bacteria; Immunity; Microbiology; Bacteria; Genetics","score_opus":0.011857153864537949,"score_gpt":0.26972588456815744,"score_spread":0.2578687307036195,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1891734594","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0116554685,0.9876096,0.000024414268,0.00007922315,0.0003656793,0.00021499542,0.00002331367,0.000003906062,0.000023352857],"genre_scores_gemma":[0.0075866464,0.9916947,0.00022904071,0.000034297173,0.000052215248,0.0000055609494,0.000094932446,0.000026263348,0.0002763591],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958044,0.0013039692,0.0022782085,0.00017370288,0.000058989706,0.00038072714],"domain_scores_gemma":[0.9961512,0.00027898228,0.0032492762,0.00017547916,0.00009847654,0.000046584457],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006331794,0.00028867213,0.0024327834,0.001183507,0.00002956374,0.000003996045,0.00026538706,0.00012122902,0.00008501585],"category_scores_gemma":[0.00009616897,0.00023379961,0.0004250027,0.00017325359,0.00028459448,0.00008740536,0.0000643692,0.00065166503,0.00000369904],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008562858,0.001834012,0.11409793,0.0134144565,0.00076271663,0.00009607184,0.00032656363,0.000025297373,0.0009320583,0.00016063296,0.0066419146,0.8531455],"study_design_scores_gemma":[0.0027928767,0.007203518,0.009003922,0.02115126,0.0004474547,0.008672779,0.00015354244,7.789608e-7,0.000037317095,0.000057450983,0.95029646,0.00018261003],"about_ca_topic_score_codex":0.000043430497,"about_ca_topic_score_gemma":0.000084631996,"teacher_disagreement_score":0.9436546,"about_ca_system_score_codex":0.00008300324,"about_ca_system_score_gemma":0.0003311688,"threshold_uncertainty_score":0.95340717},"labels":[],"label_agreement":null},{"id":"W1900975454","doi":"10.4049/jimmunol.0802189","title":"In Vivo Lipopolysaccharide Exposure of Human Blood Leukocytes Induces Cross-Tolerance to Multiple TLR Ligands","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TRIF; TLR4; In vivo; TLR2; Lipopolysaccharide; TLR5; Cytokine; Toll-like receptor; TLR3; Receptor; Immunology; Chemistry; Biology; Inflammation; Innate immune system; Biochemistry","score_opus":0.010788088357883745,"score_gpt":0.2643634972111021,"score_spread":0.25357540885321833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1900975454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99020797,0.0081271855,0.000018097131,0.0008749334,0.0005039757,0.00013697083,0.0000025276743,0.000010014072,0.00011831221],"genre_scores_gemma":[0.9986451,0.00042503115,0.000027041131,0.00024385759,0.000063293104,0.0000022560896,0.0000014663775,0.000009756778,0.00058219954],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99820775,0.00033958317,0.0009597305,0.00010913113,0.000057800098,0.000325989],"domain_scores_gemma":[0.99851495,0.00029546898,0.00064180145,0.00031863895,0.00021462218,0.000014494694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010460468,0.00017281283,0.0005000089,0.00036389494,0.0001558582,0.000011925745,0.0006242686,0.00027365,0.00017599836],"category_scores_gemma":[0.00029020064,0.00012212408,0.00012162923,0.00019381451,0.00022635276,0.00025937465,0.00006300686,0.00058018934,0.000033221466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017889283,0.00018053297,0.0015230862,0.00000497353,0.00016639571,0.000011382021,0.0029584272,0.00007636212,0.9914843,0.0002676527,0.00016172165,0.0013762809],"study_design_scores_gemma":[0.0021876697,0.002202546,0.039239053,0.00009197726,0.000047176713,0.00046974458,0.00043561615,5.9905176e-7,0.9542011,0.0002832639,0.00072634534,0.00011488078],"about_ca_topic_score_codex":0.000114431554,"about_ca_topic_score_gemma":0.000026625832,"teacher_disagreement_score":0.037715968,"about_ca_system_score_codex":0.00003399579,"about_ca_system_score_gemma":0.000091649024,"threshold_uncertainty_score":0.49800754},"labels":[],"label_agreement":null},{"id":"W1902370541","doi":"10.4049/jimmunol.181.12.8735","title":"Alveolar Macrophages from Septic Mice Promote Polymorphonuclear Leukocyte Transendothelial Migration via an Endothelial Cell Src Kinase/NADPH Oxidase Pathway","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Lawson Health Research Institute","funders":"","keywords":"NADPH oxidase; Cell biology; Proto-oncogene tyrosine-protein kinase Src; Chemistry; Chemokine; Superoxide; Immunology; Inflammation; Biology; Kinase; Biochemistry; Reactive oxygen species; Enzyme","score_opus":0.008498067270551388,"score_gpt":0.19764076471610256,"score_spread":0.18914269744555118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1902370541","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851414,0.011513053,0.0010321031,0.0006254718,0.0012301176,0.0002699143,0.000053124622,0.000046336187,0.000088504414],"genre_scores_gemma":[0.9959653,0.0020134128,0.00030363962,0.00021224341,0.00022749521,0.0000045744923,0.00006634579,0.00005193075,0.0011550788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99628747,0.0018757374,0.0009657143,0.00022811667,0.00011822976,0.0005247642],"domain_scores_gemma":[0.9981022,0.0003232376,0.0008113015,0.0005017475,0.00022004702,0.000041480027],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007690608,0.0003520088,0.00057039,0.0002529956,0.0005736009,0.000021112888,0.00074128597,0.00042188718,0.0009884898],"category_scores_gemma":[0.00007662379,0.00025315842,0.0002894758,0.00015437132,0.0005640828,0.00047280456,0.00006165525,0.00094293104,0.00068894186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005721283,0.00027650307,0.00003533558,0.0000068258228,0.00037824016,0.00014425002,0.0058512744,0.000025938245,0.98081416,0.000015952655,0.00025139737,0.0064788503],"study_design_scores_gemma":[0.0041080946,0.0018006113,0.0023026895,0.000034158227,0.00017749496,0.0035815744,0.00058259576,0.000034061246,0.9712835,0.00011607527,0.015718784,0.0002603547],"about_ca_topic_score_codex":0.0010705059,"about_ca_topic_score_gemma":0.0000731905,"teacher_disagreement_score":0.015467388,"about_ca_system_score_codex":0.00009872884,"about_ca_system_score_gemma":0.00027430654,"threshold_uncertainty_score":0.9999921},"labels":[],"label_agreement":null},{"id":"W1906902292","doi":"10.1111/j.1462-5822.2010.01466.x","title":"Impaired innate immune response and enhanced pathology during Citrobacter rodentium infection in mice lacking functional P-selectin","year":2010,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Canadian Institutes of Health Research; Genome British Columbia; Genome Prairie; Howard Hughes Medical Institute","keywords":"Citrobacter rodentium; Biology; Selectin; Immune system; Inflammation; Innate immune system; Immunology; Acquired immune system; Citrobacter; Microbiology; Enterobacteriaceae; Escherichia coli","score_opus":0.005162342796417557,"score_gpt":0.19564089955494618,"score_spread":0.19047855675852862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1906902292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99617755,0.00089355244,0.00023067242,0.00020829284,0.0020004027,0.00031494,0.000007384005,0.00009991836,0.00006730531],"genre_scores_gemma":[0.997852,0.000100308935,0.000047882877,0.00006393312,0.000063713036,0.00004431288,0.00032283762,0.000031327665,0.001473662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99718106,0.0010288893,0.0006093541,0.0005473458,0.000017813656,0.0006155646],"domain_scores_gemma":[0.9990976,0.00023076564,0.00024566104,0.0002953048,0.00010765668,0.000023014709],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001086087,0.00029820603,0.00041920267,0.00053282373,0.0002746853,0.000025071475,0.0001425658,0.0008069965,0.0004948207],"category_scores_gemma":[0.00028737768,0.00030390153,0.000110917535,0.0002594531,0.0003334892,0.00019029932,0.0001679678,0.0009892645,0.000353676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032786808,0.00008086937,0.004784319,0.00002247079,0.00006329674,0.00002645955,0.0004741207,0.0000076121787,0.99076015,0.00005878943,0.000035721292,0.00040749327],"study_design_scores_gemma":[0.0019710157,0.00011770175,0.23007274,0.000016970469,0.00001584464,0.00085368357,0.00003393451,0.000003325743,0.764897,0.000037179994,0.0017436454,0.00023698712],"about_ca_topic_score_codex":0.0000966085,"about_ca_topic_score_gemma":0.0001903184,"teacher_disagreement_score":0.22586319,"about_ca_system_score_codex":0.000076731005,"about_ca_system_score_gemma":0.00008685544,"threshold_uncertainty_score":0.9999413},"labels":[],"label_agreement":null},{"id":"W1909011356","doi":"10.1002/jlb.67.3.405","title":"Phosphatidylinositol 3-kinase and mTOR mediate lipopolysaccharide-stimulated nitric oxide production in macrophages via interferon-β","year":2000,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Inimex Pharmaceuticals (Canada)","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"P70-S6 Kinase 1; Phosphatidylinositol; Biology; Kinase; PI3K/AKT/mTOR pathway; Cell biology; Nitric oxide; Signal transduction; Endocrinology","score_opus":0.0073020074054001936,"score_gpt":0.23783029866764116,"score_spread":0.23052829126224098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1909011356","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862402,0.012396385,0.000047665442,0.00040678994,0.0006855748,0.00016068864,0.00000198658,0.000018675144,0.000042030853],"genre_scores_gemma":[0.9961812,0.0028562706,0.00008903388,0.0000873251,0.00011733427,0.0000046257037,0.00001637252,0.000013427375,0.00063445006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819404,0.0004420131,0.00081339607,0.00020850272,0.000034047433,0.00030801824],"domain_scores_gemma":[0.99915516,0.00015183318,0.0003911558,0.00015236485,0.00011746346,0.000032000586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006121007,0.00019178377,0.00044911826,0.00041455927,0.000085995576,0.0000124995995,0.00017709553,0.00032416347,0.00050666335],"category_scores_gemma":[0.00018146743,0.0001531286,0.00008510208,0.00016817497,0.00018111919,0.00024888912,0.00003481402,0.00047317438,0.00014145937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002879636,0.00008525224,0.0028924183,0.000012961515,0.000110571586,0.000039288156,0.0002188228,0.000053654858,0.92508954,0.000014726496,0.00023597844,0.068367176],"study_design_scores_gemma":[0.0023473059,0.0006312798,0.029899713,0.00007789287,0.000057784906,0.00096156594,0.00007106272,0.000043427004,0.9589747,0.00017659673,0.0065691564,0.00018951097],"about_ca_topic_score_codex":0.00009451099,"about_ca_topic_score_gemma":0.000008301743,"teacher_disagreement_score":0.06817767,"about_ca_system_score_codex":0.000098588156,"about_ca_system_score_gemma":0.00008431035,"threshold_uncertainty_score":0.6244403},"labels":[],"label_agreement":null},{"id":"W191005351","doi":"10.4049/jimmunol.178.supp.35.36","title":"Identification of a regulatory region which controls inducible expression of the human CD200 gene (35.36)","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto; University of New Brunswick; Toronto General Hospital; Canada Research Chairs; Toronto Western Hospital","funders":"","keywords":"Jurkat cells; Molecular biology; Biology; Regulatory sequence; Binding site; Gene; Gene expression; Promoter; Regulation of gene expression; Cell biology; Genetics; T cell","score_opus":0.013146018775526704,"score_gpt":0.24946018268080505,"score_spread":0.23631416390527835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W191005351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99096024,0.006855992,0.0007005582,0.00039421828,0.0007302172,0.00019331845,0.0000013405321,0.0000063339367,0.00015779692],"genre_scores_gemma":[0.99894285,0.00032680697,0.000011590963,0.000028065888,0.000041403502,0.0000015320995,0.0000032448038,0.000010934304,0.0006335608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973701,0.00095032994,0.0012847993,0.00008832583,0.00008632098,0.00022012107],"domain_scores_gemma":[0.9962531,0.00033062295,0.0023008238,0.00060923817,0.00049808034,0.000008139885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031659268,0.0001224008,0.0003771375,0.00023008435,0.00021834217,0.000003905592,0.00061942526,0.00030595224,0.000044836946],"category_scores_gemma":[0.00032615784,0.00007054193,0.00014969594,0.00024803964,0.00042432937,0.0001481949,0.00009980275,0.00048611453,0.0000104567725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00167803,0.00008935992,0.0004819998,0.000010101436,0.00018664905,9.365589e-7,0.0011633686,0.000023237902,0.9942174,0.0006140301,0.0003360023,0.0011989091],"study_design_scores_gemma":[0.0012692182,0.0002696524,0.085288845,0.000106844614,0.000090105415,0.00041570296,0.00059358386,6.075625e-7,0.9106858,0.00040794897,0.00081307645,0.000058658236],"about_ca_topic_score_codex":0.000030563308,"about_ca_topic_score_gemma":0.0000063498146,"teacher_disagreement_score":0.084806845,"about_ca_system_score_codex":0.000051343155,"about_ca_system_score_gemma":0.00011965089,"threshold_uncertainty_score":0.28766164},"labels":[],"label_agreement":null},{"id":"W1910519909","doi":"10.4049/jimmunol.180.10.6911","title":"Dual Role of NOX2 in Respiratory Syncytial Virus- and Sendai Virus-Induced Activation of NF-κB in Airway Epithelial Cells","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Sendai virus; Chemokine; NADPH oxidase; Biology; Signal transduction; Paramyxoviridae; Phosphorylation; Proinflammatory cytokine; Mononegavirales; NF-κB; A549 cell; Virus; Transcription factor; Cell biology; Immunology; Inflammation; Cell culture; Reactive oxygen species; Gene","score_opus":0.012064138081710099,"score_gpt":0.22511071883979872,"score_spread":0.21304658075808863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1910519909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960027,0.0032975464,0.000017720158,0.00011628492,0.00031071238,0.00014103454,0.0000063120715,0.0000038875146,0.00010381068],"genre_scores_gemma":[0.99845105,0.0014123257,0.000012867032,0.000036922025,0.000033948574,0.000001926991,0.0000025381999,0.000011231594,0.00003718923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99745154,0.0011556548,0.0010000323,0.00009733263,0.00006269836,0.00023271849],"domain_scores_gemma":[0.99836606,0.0004392383,0.000836866,0.00020685975,0.00014212518,0.000008842493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001186494,0.000146351,0.00051358045,0.0005153608,0.00007364725,0.0000018391871,0.00021949667,0.000321927,0.00008138178],"category_scores_gemma":[0.00019432389,0.00011056538,0.000079547266,0.00020944387,0.00038920698,0.00021203843,0.00008068765,0.0006263996,0.000015739906],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004615965,0.00015450573,0.00042152504,0.00000847518,0.000120646364,0.000008774453,0.004129022,0.00004042668,0.98541063,0.00009661713,0.00003064886,0.004962777],"study_design_scores_gemma":[0.00258331,0.0009819982,0.038786653,0.00006600822,0.00002271478,0.0002141461,0.00089380034,0.0000039699917,0.9553314,0.00010559585,0.0009211122,0.00008933481],"about_ca_topic_score_codex":0.00040950143,"about_ca_topic_score_gemma":0.00006599837,"teacher_disagreement_score":0.038365126,"about_ca_system_score_codex":0.00006148095,"about_ca_system_score_gemma":0.00023104613,"threshold_uncertainty_score":0.45087254},"labels":[],"label_agreement":null},{"id":"W1913299325","doi":"10.4049/jimmunol.178.1.463","title":"Differential Regulation of Cytokine Release and Leukocyte Migration by Lipopolysaccharide-Stimulated Primary Human Lung Alveolar Type II Epithelial Cells and Macrophages","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":209,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"","keywords":"Chemokine; Autocrine signalling; Cytokine; Macrophage; Lipopolysaccharide; Tumor necrosis factor alpha; Macrophage inflammatory protein; Alveolar macrophage; Chemistry; Cell biology; Biology; Inflammation; In vitro; Immunology; Molecular biology; Cell culture; Biochemistry","score_opus":0.004976564566888546,"score_gpt":0.2202174243064715,"score_spread":0.21524085973958296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1913299325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98849213,0.009950869,0.0007994946,0.00018703111,0.0003994149,0.00013445609,0.000006701455,0.000010357225,0.000019516796],"genre_scores_gemma":[0.9974478,0.0019568428,0.00003040627,0.000029421231,0.00003829838,3.870051e-7,0.000041198102,0.000012600071,0.00044303574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998594,0.0003690906,0.0006804835,0.000098189696,0.000053676984,0.00020454633],"domain_scores_gemma":[0.99871045,0.0002171838,0.00069430075,0.00016615592,0.0001967357,0.000015194399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007369483,0.00014920162,0.00033732256,0.00018752401,0.00028668856,0.000008116524,0.00014661864,0.00024882518,0.0001319059],"category_scores_gemma":[0.00006531086,0.00010667805,0.000054761364,0.00008213883,0.00034576413,0.0001673054,0.00009273203,0.000358629,0.000004400429],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042147017,0.00006270418,0.00016326671,0.000016571683,0.00029641538,0.00000259849,0.00076776743,0.000008307039,0.9895644,0.000103275,0.00030543245,0.0044945185],"study_design_scores_gemma":[0.0019072187,0.00097612955,0.028795164,0.000037618014,0.00019148162,0.00028040068,0.00010456013,0.000025473797,0.96655023,0.00008777621,0.0009482182,0.00009574682],"about_ca_topic_score_codex":0.00011004034,"about_ca_topic_score_gemma":0.000007903835,"teacher_disagreement_score":0.028631898,"about_ca_system_score_codex":0.00004109312,"about_ca_system_score_gemma":0.000039979834,"threshold_uncertainty_score":0.43502048},"labels":[],"label_agreement":null},{"id":"W1914506150","doi":"10.1016/s0022-3565(24)29491-x","title":"Immune Stimulation by a CpG-Containing Oligodeoxynucleotide Is Enhanced When Encapsulated and Delivered in Lipid Particles","year":2001,"lang":"en","type":"article","venue":"Journal of Pharmacology and Experimental Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Inimex Pharmaceuticals (Canada)","funders":"","keywords":"Immune system; CpG Oligodeoxynucleotide; Immunogenicity; Tumor necrosis factor alpha; Cytokine; Chemistry; Molecular biology; CpG site; Interferon gamma; Immunology; Biology; Biochemistry; Gene expression","score_opus":0.016168133038809464,"score_gpt":0.29815425693273934,"score_spread":0.28198612389392985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1914506150","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97633857,0.022449447,0.00013589323,0.0006091628,0.000294109,0.000118289514,0.0000016146261,0.000009081953,0.000043812823],"genre_scores_gemma":[0.99656534,0.0022958093,0.00007451608,0.00091272226,0.000034833498,0.000005710799,0.0000055007145,0.000009943211,0.000095619245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891466,0.0002419818,0.00048018087,0.00011524948,0.000033987282,0.00021394446],"domain_scores_gemma":[0.9995292,0.00010356291,0.00024855864,0.00004705908,0.000051297942,0.000020335932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029391426,0.00013434871,0.00026135132,0.00011240281,0.000113702365,0.000014661937,0.000077783094,0.00015171422,0.00042221753],"category_scores_gemma":[0.000005973562,0.00012088923,0.000042822387,0.00006554902,0.00013587186,0.0002556248,0.00003586137,0.0002165921,0.0000075206344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034757392,0.00016928218,0.00095036457,0.0000032335627,0.00022926036,0.000009065117,0.0055015814,0.000022985854,0.98135996,0.000019175759,0.00030739946,0.007951935],"study_design_scores_gemma":[0.0053529656,0.0007271883,0.0016339804,0.000021972606,0.000068697096,0.00015596148,0.0012473032,0.00043893929,0.9846343,0.000102310456,0.005493394,0.00012300047],"about_ca_topic_score_codex":0.000018012266,"about_ca_topic_score_gemma":9.0924846e-7,"teacher_disagreement_score":0.020226756,"about_ca_system_score_codex":0.00005211414,"about_ca_system_score_gemma":0.000029675892,"threshold_uncertainty_score":0.492972},"labels":[],"label_agreement":null},{"id":"W1916906447","doi":"10.1093/intimm/dxv030","title":"Involvement of the cytoplasmic cysteine-238 of CD40 in its up-regulation of CD23 expression and its enhancement of TLR4-triggered responses","year":2015,"lang":"en","type":"article","venue":"International Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"Canadian Arthritis Network; Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"CD23; Cell biology; Innate immune system; CD40; TLR4; Signal transduction; Biology; Chemistry; Receptor; Antibody; Biochemistry; Immunology; Immunoglobulin E","score_opus":0.025303709538492643,"score_gpt":0.2665046752018867,"score_spread":0.24120096566339405,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1916906447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940533,0.0042565423,0.000047217734,0.00023363996,0.00084954547,0.00027830363,0.000027222653,0.0000047099065,0.00024949812],"genre_scores_gemma":[0.99815404,0.0002610594,0.000030869393,0.0000097442235,0.0000071323234,0.000019019082,0.00004886431,0.000006574844,0.0014626847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99836624,0.0004250996,0.0008279531,0.00014843525,0.00010622457,0.00012606604],"domain_scores_gemma":[0.9983479,0.00022518326,0.0007293099,0.00021659001,0.00047438705,0.0000066525135],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005330175,0.00011472826,0.0003191836,0.0003267884,0.000021014557,0.0000016945273,0.0002932794,0.0001826523,0.000106609565],"category_scores_gemma":[0.0004571799,0.000090539055,0.00006565102,0.00013614299,0.00019574144,0.00013039944,0.0002129173,0.00011879971,0.000008967976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030988418,0.00014694431,0.0019126111,0.00003983724,0.00016332598,2.6865328e-7,0.0014245829,0.000042004165,0.9899155,0.002565549,0.00006687505,0.00062365324],"study_design_scores_gemma":[0.0024937734,0.00038085948,0.029296683,0.0002663173,0.000016122356,0.000012213132,0.00040405456,0.00005888018,0.9659113,0.00026886788,0.0008254036,0.000065500724],"about_ca_topic_score_codex":0.000091036316,"about_ca_topic_score_gemma":0.000016249047,"teacher_disagreement_score":0.027384073,"about_ca_system_score_codex":0.000064127256,"about_ca_system_score_gemma":0.00013391692,"threshold_uncertainty_score":0.36920756},"labels":[],"label_agreement":null},{"id":"W1917892434","doi":"10.4049/jimmunol.164.3.1617","title":"Delineation of a CpG Phosphorothioate Oligodeoxynucleotide for Activating Primate Immune Responses In Vitro and In Vivo","year":2000,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":586,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute","keywords":"CpG Oligodeoxynucleotide; CpG site; In vivo; Immune system; Adjuvant; In vitro; Biology; Molecular biology; Immunology; Virology; DNA methylation; Gene; Gene expression; Biochemistry; Genetics","score_opus":0.00933588569244893,"score_gpt":0.2503434698357612,"score_spread":0.2410075841433123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1917892434","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99026924,0.008480953,0.00019616642,0.0005936838,0.00012682498,0.00025571376,0.0000051938196,0.0000056415506,0.00006655963],"genre_scores_gemma":[0.9966721,0.0025816425,0.00025975247,0.000047091376,0.000011616166,0.000011798777,0.0000037963807,0.000013041073,0.00039914274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979665,0.00068576174,0.000973764,0.00008615136,0.000032832657,0.00025496035],"domain_scores_gemma":[0.9982365,0.0009209099,0.0005479819,0.0001722387,0.00011650266,0.0000058916703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019382882,0.00012956695,0.00043256098,0.00030983158,0.000078791156,0.000005738586,0.00021925071,0.0001741416,0.00014806777],"category_scores_gemma":[0.00042235685,0.000095128664,0.00007408255,0.000170792,0.00019940703,0.0001979892,0.00003599981,0.0003196336,0.000004888745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.029006703,0.000062181185,0.00016187655,0.000014579485,0.000096250405,0.0000022964987,0.0015345127,0.00009915022,0.93522465,0.00004851409,0.000021850805,0.033727456],"study_design_scores_gemma":[0.003181279,0.00038404894,0.014390437,0.00012080743,0.000026731002,0.00030689657,0.0006217025,0.00006464385,0.9782043,0.0002101771,0.0024014192,0.00008753704],"about_ca_topic_score_codex":0.00014089404,"about_ca_topic_score_gemma":0.000014244813,"teacher_disagreement_score":0.04297969,"about_ca_system_score_codex":0.000056581277,"about_ca_system_score_gemma":0.00009153122,"threshold_uncertainty_score":0.38792342},"labels":[],"label_agreement":null},{"id":"W1919309518","doi":"10.1186/ar1394","title":"Differential induction of IL-1β and tumor necrosis factor by CD40 ligand or cellular contact with stimulated T cells depends on the degree of maturity of human monocytes","year":2004,"lang":"en","type":"article","venue":"Arthritis Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Arthritis Network; School of Medicine, University of California, San Diego; Menzies Institute for Medical Research; National Cancer Institute; Arthritis Society; University of North Carolina at Chapel Hill; Genentech; National Institutes of Health; Biogen; Lupus Research Institute; Pfizer; Natural Sciences and Engineering Research Council of Canada; Dutch Arthritis Association; Oesterreichische Nationalbank; Deutsche Forschungsgemeinschaft; Nuffield Foundation; Physiotherapy Foundation of Canada; Canadian Institutes of Health Research; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Lupus Research Alliance; Wellcome Trust; Newcastle University; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; Austrian Science Fund; Arthritis Foundation","keywords":"CD40; Tumor necrosis factor alpha; Monocyte; Cytokine; Cell biology; Macrophage; Chemistry; Membrane; Biology; Molecular biology; Immunology; Biochemistry; In vitro; Cytotoxic T cell","score_opus":0.056137467539041856,"score_gpt":0.2903273752872935,"score_spread":0.23418990774825166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1919309518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855256,0.0007728642,0.000015537664,0.00007949499,0.000041984327,0.00038039326,0.000081957856,0.0000091099455,0.00006611847],"genre_scores_gemma":[0.9993187,0.0004001371,0.000007680015,0.0000037429118,0.000006955605,0.000013364995,0.000050524035,0.000012329343,0.00018653092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987257,0.00036190127,0.0003381858,0.00018540256,0.00013511236,0.00025369856],"domain_scores_gemma":[0.99906254,0.00030236185,0.00015026871,0.0002550334,0.00021091398,0.000018908862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031100746,0.00012219451,0.0003015657,0.00016420754,0.00020062007,0.000015775768,0.00015501468,0.0001498237,0.00030282573],"category_scores_gemma":[0.00007928747,0.00007784613,0.000045210316,0.0001666138,0.0004639549,0.00009678393,0.00006942975,0.00037091642,0.000009991245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002074728,0.0001901321,0.00036750323,0.000042635234,0.00009952024,0.0000041845556,0.0005822501,0.0000019138474,0.99275124,0.0002940349,0.00009882542,0.003493049],"study_design_scores_gemma":[0.0026191848,0.0024712593,0.012279174,0.00023863518,0.0000099830695,0.000010004164,0.00028765225,0.0000020831326,0.9817962,0.00010831422,0.0000975634,0.00007995816],"about_ca_topic_score_codex":0.0010041288,"about_ca_topic_score_gemma":0.0001578537,"teacher_disagreement_score":0.011911671,"about_ca_system_score_codex":0.000024686953,"about_ca_system_score_gemma":0.000077627155,"threshold_uncertainty_score":0.33157295},"labels":[],"label_agreement":null},{"id":"W1923025591","doi":"10.1152/ajplung.00068.2014","title":"Leukocyte-specific protein 1 regulates neutrophil recruitment in acute lung inflammation","year":2015,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Division of Graduate Education; Natural Sciences and Engineering Research Council of Canada","keywords":"Inflammation; Bronchoalveolar lavage; Lipopolysaccharide; Chemokine; Lung; Immunology; Myeloperoxidase; Pathology; Medicine; Internal medicine","score_opus":0.011970775900759375,"score_gpt":0.23919264778699265,"score_spread":0.22722187188623327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1923025591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912211,0.0069725337,0.000314686,0.0005061544,0.00037571418,0.0005183367,0.0000025028876,0.000023500048,0.00006548603],"genre_scores_gemma":[0.99862736,0.00055345247,0.00032850725,0.000118382144,0.00010277347,0.00004655723,0.000098335506,0.00003235024,0.00009227442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99690336,0.0012483995,0.0008576786,0.00039104588,0.000086861175,0.00051263545],"domain_scores_gemma":[0.99834895,0.00008517016,0.0008632417,0.00036933518,0.0002523116,0.000080978345],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059019646,0.00034068504,0.00088227214,0.0004045612,0.000091099304,0.000015586698,0.0003137222,0.0002312834,0.000036351023],"category_scores_gemma":[0.000058372498,0.00029235,0.00019855879,0.0003149541,0.0006539883,0.0002203362,0.0001352353,0.0005682602,0.000031830838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021568656,0.00008602285,0.000039149952,0.000022392556,0.0003637271,0.000044354234,0.00063616026,0.00030410898,0.99144346,0.00087688904,0.00030500858,0.0037218516],"study_design_scores_gemma":[0.0026999793,0.0016702381,0.0059334035,0.00009123972,0.000101361366,0.00017690263,0.00047719464,0.00010875124,0.98128366,0.0012243512,0.005900786,0.00033215072],"about_ca_topic_score_codex":0.000039262166,"about_ca_topic_score_gemma":0.0000012133947,"teacher_disagreement_score":0.010159828,"about_ca_system_score_codex":0.00014908618,"about_ca_system_score_gemma":0.00017719183,"threshold_uncertainty_score":0.99995285},"labels":[],"label_agreement":null},{"id":"W1924340117","doi":"10.4049/jimmunol.173.2.1327","title":"Immunoregulatory Role of Nitric Oxide in Kilham Rat Virus-Induced Autoimmune Diabetes in DR-BB Rats","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Pathogenesis; Immune system; Proinflammatory cytokine; Chemokine; Nitric oxide; Virus; Inflammation; Lipopolysaccharide; CD8; Chemistry; Immunology; Biology; Endocrinology","score_opus":0.006468341929901536,"score_gpt":0.21269371485162566,"score_spread":0.20622537292172413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1924340117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96015227,0.038522776,0.000007094287,0.00042526473,0.00052022364,0.00022476884,0.0000014872087,0.000013637834,0.00013245684],"genre_scores_gemma":[0.99856377,0.001157116,0.00002388021,0.00006081637,0.000019005014,0.000007612,0.0000076258284,0.00002408938,0.00013610415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965084,0.0012081115,0.0015205367,0.0001417008,0.00008204018,0.0005391766],"domain_scores_gemma":[0.9978743,0.00044210805,0.0010019187,0.00049046415,0.00017847808,0.000012683196],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020515188,0.00026315148,0.00080160884,0.0009548312,0.000107750595,0.000008320864,0.00077304617,0.0004380825,0.00010778809],"category_scores_gemma":[0.00031367753,0.0001947128,0.00019265119,0.0005967149,0.00039001834,0.0003195205,0.00015716659,0.0011231445,0.000099349025],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016957456,0.0002690581,0.0014832766,0.000009812084,0.00025528134,0.000011815458,0.001308931,0.00029413393,0.9906,0.0004135214,0.00002642849,0.0036319802],"study_design_scores_gemma":[0.0033061625,0.0004388985,0.19178496,0.00016757024,0.000044059023,0.00019468107,0.0011469154,0.0000031757618,0.80053335,0.0014524775,0.0007758479,0.00015187345],"about_ca_topic_score_codex":0.000503722,"about_ca_topic_score_gemma":0.000056672507,"teacher_disagreement_score":0.19030169,"about_ca_system_score_codex":0.00024449546,"about_ca_system_score_gemma":0.00037318413,"threshold_uncertainty_score":0.79401577},"labels":[],"label_agreement":null},{"id":"W1929164122","doi":"10.1111/j.1750-3639.2011.00490.x","title":"Crawling Phagocytes Recruited in the Brain Vasculature after Pertussis Toxin Exposure through IL6, ICAM1 and ITGαM","year":2011,"lang":"en","type":"article","venue":"Brain Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Multiple Sclerosis Society of Canada; Amgen","keywords":"Tumor necrosis factor alpha; Lipopolysaccharide; Immunology; Cell biology; Pertussis toxin; Biology; Cholera toxin; Population; Downregulation and upregulation; Inflammation; Microbiology; Medicine; Signal transduction; Gene","score_opus":0.023643114315177776,"score_gpt":0.23979967948191727,"score_spread":0.2161565651667395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1929164122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812063,0.010862847,0.00022219586,0.0056922017,0.00030295295,0.0003995744,0.000009237101,0.000058343707,0.0012463201],"genre_scores_gemma":[0.9928218,0.00022487763,0.00032666244,0.0054345992,0.00004596723,0.00013684893,0.00005191886,0.000021278916,0.000936041],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99748194,0.0012565448,0.00038262387,0.00039641766,0.000039775878,0.0004426768],"domain_scores_gemma":[0.9987843,0.00060292607,0.000109348235,0.00044671725,0.000043916258,0.000012773215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009848857,0.00023671216,0.0003262937,0.00014770063,0.00015103132,0.000019499723,0.00025859918,0.0006026844,0.0005504194],"category_scores_gemma":[0.0005348598,0.00016551383,0.000105176434,0.00021438522,0.00033492275,0.00021567801,0.000099032164,0.0005241575,0.00013639199],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020668732,0.0002958047,0.015972015,0.000060723894,0.00019941154,0.0006332052,0.14448187,8.0621334e-7,0.7999249,0.00290085,0.004950392,0.028513148],"study_design_scores_gemma":[0.0051654438,0.00096628384,0.75562936,0.00013918168,0.00010295396,0.0029830637,0.0086553,0.0000074253917,0.11414169,0.0043250197,0.10708984,0.00079446135],"about_ca_topic_score_codex":0.0000414125,"about_ca_topic_score_gemma":0.00006136984,"teacher_disagreement_score":0.73965734,"about_ca_system_score_codex":0.000019121147,"about_ca_system_score_gemma":0.000034945286,"threshold_uncertainty_score":0.67494583},"labels":[],"label_agreement":null},{"id":"W1930867397","doi":"10.1046/j.1471-4159.2001.00603.x","title":"Circulating cell wall components derived from gram‐negative, not gram‐positive, bacteria cause a profound induction of the gene‐encoding Toll‐like receptor 2 in the CNS","year":2001,"lang":"en","type":"article","venue":"Journal of Neurochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"TLR2; Lipoteichoic acid; Biology; Toll-like receptor; Innate immune system; Receptor; TLR4; Cell biology; Transcription factor; Peptidoglycan; Signal transduction; Proinflammatory cytokine; Molecular biology; Immunology; Gene; Inflammation; Biochemistry; Bacteria; Genetics","score_opus":0.026242791854081206,"score_gpt":0.2367183101028759,"score_spread":0.21047551824879468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1930867397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99854594,0.00013625778,0.000026144435,0.00045862852,0.00054982066,0.00015370017,0.000008574783,0.000005476572,0.00011547232],"genre_scores_gemma":[0.99945134,0.00010426987,0.00007884092,0.00014248978,0.00007426774,0.0000037088664,0.000030557243,0.00001162099,0.000102924096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984449,0.0004745727,0.00062940456,0.0001466543,0.00010429173,0.00020016974],"domain_scores_gemma":[0.998495,0.00028004468,0.0008374404,0.00022659797,0.00014564219,0.000015300006],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030721977,0.00015710594,0.00025638074,0.000060016162,0.00016895226,0.000027886155,0.00037036726,0.00017874259,0.000085745894],"category_scores_gemma":[0.00016825229,0.00010570014,0.0001456223,0.0001512702,0.00011128823,0.00017472546,0.00005959245,0.00063712266,0.0000067924248],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005099125,0.00012130408,0.0025947995,0.00001573424,0.00006939511,0.000029739856,0.0016740775,0.000018893485,0.99465567,7.75379e-7,0.000079387726,0.0002302979],"study_design_scores_gemma":[0.001036773,0.000059280515,0.15754654,0.000114678944,0.000047589838,0.00057717884,0.00052325224,0.000010307868,0.83965355,0.000017690229,0.0003248671,0.00008831104],"about_ca_topic_score_codex":0.00006109707,"about_ca_topic_score_gemma":0.000003621423,"teacher_disagreement_score":0.15500215,"about_ca_system_score_codex":0.00007031847,"about_ca_system_score_gemma":0.00007655872,"threshold_uncertainty_score":0.43103266},"labels":[],"label_agreement":null},{"id":"W1938259528","doi":"10.1139/cjm-2015-0063","title":"Mucosal and systemic immune responses induced by a single time vaccination strategy in mice","year":2015,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Immune system; Vaccination; Immunology; Biology; Microbiology; Virology","score_opus":0.016309127355125328,"score_gpt":0.2213389769929938,"score_spread":0.20502984963786847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1938259528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9800208,0.01867166,0.000010834092,0.0005019483,0.00039695675,0.00013091657,0.000026108792,0.000006027915,0.00023475119],"genre_scores_gemma":[0.9988211,0.00003915036,0.000012082088,0.00006929778,0.00002327175,0.000002045676,0.000073855364,0.000012449517,0.00094673876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981402,0.0007577642,0.00060090626,0.00013941448,0.000013505453,0.00034817043],"domain_scores_gemma":[0.99911803,0.00014429423,0.00032942704,0.000103664366,0.0002137072,0.00009087281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096807687,0.0001475649,0.00036157834,0.00056227075,0.00006880871,0.000023062401,0.00019139923,0.00037134875,0.00012429559],"category_scores_gemma":[0.00036627168,0.00013814315,0.000046264624,0.00014606985,0.000087831046,0.0001750977,0.000016822616,0.00034155685,0.00012700855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004229278,0.00001892878,0.00039679097,0.000007704019,0.000050257342,0.000034415465,0.00055228703,0.000004215161,0.9920096,0.000032358148,0.004264456,0.0022060813],"study_design_scores_gemma":[0.0070250533,0.0024749688,0.008340246,0.00022718833,0.000069837595,0.015699254,0.0019790549,0.0000073673145,0.9322168,0.00014361614,0.03131481,0.0005017827],"about_ca_topic_score_codex":0.0020563682,"about_ca_topic_score_gemma":0.0020432854,"teacher_disagreement_score":0.059792757,"about_ca_system_score_codex":0.00028484745,"about_ca_system_score_gemma":0.0011504726,"threshold_uncertainty_score":0.5633314},"labels":[],"label_agreement":null},{"id":"W1938526746","doi":"10.1055/s-0037-1613434","title":"Molecular mechanisms of leukocyte recruitment: organ-specific mechanisms of action","year":2003,"lang":"en","type":"article","venue":"Thrombosis and Haemostasis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Action (physics); Medicine; Mechanism of action; Immunology; Computational biology; Biology; Genetics; In vitro","score_opus":0.09021685049853202,"score_gpt":0.3058279055524522,"score_spread":0.2156110550539202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1938526746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97197753,0.0022181747,0.024167486,0.00020014938,0.00031424873,0.00043224936,0.000015999225,0.000032249143,0.0006419249],"genre_scores_gemma":[0.9964494,0.0022089106,0.0011099984,0.00006278152,0.000002752341,0.000022267857,0.00004222889,0.000018720944,0.00008294174],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883944,0.0002676711,0.0004027899,0.0002181474,0.000060819402,0.00021115143],"domain_scores_gemma":[0.9992859,0.00006016456,0.0002516578,0.0002847181,0.00010037929,0.000017230892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037864136,0.00016649869,0.00039835216,0.0001438554,0.000114559785,0.000008138807,0.00009413238,0.00021347924,0.0006015535],"category_scores_gemma":[0.000030119918,0.00015338295,0.000099070436,0.00018439813,0.00011443578,0.00011094953,0.00003430962,0.00011115121,0.000034999546],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000104643135,0.000089554655,0.0000093638355,0.00003270361,0.00018996307,5.5409373e-7,0.00037789153,0.0000015829518,0.8879909,0.10237618,0.00018412746,0.008642554],"study_design_scores_gemma":[0.0010286724,0.00027543603,0.0005019318,0.00004788455,0.000090927366,0.000014305222,0.00066798745,0.0000013335442,0.9779738,0.013847685,0.0054080626,0.0001419263],"about_ca_topic_score_codex":0.000029707564,"about_ca_topic_score_gemma":0.000002444203,"teacher_disagreement_score":0.089982964,"about_ca_system_score_codex":0.000029933828,"about_ca_system_score_gemma":0.000030206444,"threshold_uncertainty_score":0.65865886},"labels":[],"label_agreement":null},{"id":"W1942691337","doi":"10.4049/jimmunol.178.9.5735","title":"Protein Kinase D Interaction with TLR5 Is Required for Inflammatory Signaling in Response to Bacterial Flagellin","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre; University of British Columbia","funders":"","keywords":"TLR5; Flagellin; Cell biology; HEK 293 cells; Phosphorylation; Protein kinase C; Kinase; Protein kinase A; Molecular biology; Signal transduction; Biology; Immunoprecipitation; p38 mitogen-activated protein kinases; GSK-3; Biochemistry; TLR4; Gene; TLR2","score_opus":0.01234532280429349,"score_gpt":0.2541695487054065,"score_spread":0.241824225901113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1942691337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99339044,0.000664557,0.0031362576,0.0014838724,0.00067669404,0.00060610956,0.0000023134328,0.000012939115,0.000026832253],"genre_scores_gemma":[0.99883604,0.00002702116,0.00035793212,0.00014204188,0.00009032478,0.000014832735,0.000005747873,0.000021107426,0.00050496653],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976794,0.0009001989,0.0008657061,0.00011853886,0.00005162805,0.00038452446],"domain_scores_gemma":[0.99798083,0.0008928931,0.0005945134,0.00024998223,0.00026345497,0.000018332645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0050534667,0.00017002935,0.00033235468,0.00052336627,0.0001451871,0.000014419955,0.00032151077,0.00023762874,0.00013525477],"category_scores_gemma":[0.00051228085,0.00011421006,0.000088328175,0.00019795679,0.00014001437,0.00024904238,0.000048104957,0.00047143767,0.00007946229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.1503607,0.000051338302,0.00002679411,0.000008083186,0.0001488806,0.000019925244,0.0032533668,0.000042416596,0.8420407,0.00004777044,0.0001326534,0.0038673305],"study_design_scores_gemma":[0.003502146,0.0025259326,0.0027524962,0.00020689939,0.00003937428,0.00047489442,0.0018111747,0.0000019495117,0.96046436,0.00008399034,0.027997995,0.00013879039],"about_ca_topic_score_codex":0.00002402304,"about_ca_topic_score_gemma":0.000032331303,"teacher_disagreement_score":0.14685856,"about_ca_system_score_codex":0.00016145573,"about_ca_system_score_gemma":0.00018311654,"threshold_uncertainty_score":0.4657351},"labels":[],"label_agreement":null},{"id":"W1944381048","doi":"10.4049/jimmunol.176.2.1195","title":"Activation of TLR-9 Induces IL-8 Secretion through Peroxynitrite Signaling in Human Neutrophils","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Peroxynitrite; CpG site; Molecular biology; Chemistry; DNA methylation; Intracellular; Secretion; DNA; Cell biology; Biology; Superoxide; Gene expression; Biochemistry; Gene; Enzyme","score_opus":0.014360960280408305,"score_gpt":0.24563731694605342,"score_spread":0.2312763566656451,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1944381048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949674,0.0033327327,0.00032465075,0.00062721164,0.00027413951,0.00011786859,0.0000013301103,0.000008294627,0.00034636963],"genre_scores_gemma":[0.999425,0.0002724241,0.000037187157,0.000033299115,0.000064556174,0.0000018967621,0.000020723248,0.000010338915,0.0001346014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997947,0.00085399376,0.00085633324,0.00007528751,0.000052062212,0.0002153272],"domain_scores_gemma":[0.9984075,0.00029840623,0.0009157182,0.00017702923,0.00019793765,0.0000033986512],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096224004,0.00012751375,0.00033992133,0.0002836743,0.00014042515,0.0000065433815,0.000283822,0.00025160456,0.000109314664],"category_scores_gemma":[0.00008437574,0.00009109188,0.000097875265,0.00021943929,0.00024184705,0.0003299437,0.00004203813,0.000557634,0.000015050668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092810433,0.000094660805,0.00019630996,0.000007930759,0.00010329251,0.0000021109045,0.0011048376,0.00031036092,0.9944659,0.001877065,0.00007754434,0.0008318898],"study_design_scores_gemma":[0.0015715207,0.0005273913,0.025870472,0.0001050825,0.0000427948,0.00018985315,0.0009529618,0.0000017667583,0.9663774,0.003020024,0.0012537697,0.00008697994],"about_ca_topic_score_codex":0.00042931602,"about_ca_topic_score_gemma":0.000008498396,"teacher_disagreement_score":0.02808851,"about_ca_system_score_codex":0.00006551477,"about_ca_system_score_gemma":0.00006789025,"threshold_uncertainty_score":0.3714619},"labels":[],"label_agreement":null},{"id":"W1948285947","doi":"10.4049/jimmunol.0900021","title":"The Single IgG IL-1–Related Receptor Controls TLR Responses in Differentiated Human Intestinal Epithelial Cells","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital","funders":"National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"Chemokine; Biology; Flagellin; Immunology; Receptor; Gene silencing; Inflammation; Cell biology; Gene","score_opus":0.009221651678126472,"score_gpt":0.2309500697865437,"score_spread":0.22172841810841723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1948285947","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923997,0.00255096,0.00004205719,0.0016922775,0.0028867857,0.00021568433,0.000006227574,0.00002334497,0.00018297439],"genre_scores_gemma":[0.9975216,0.00036699732,0.000016760949,0.000053494372,0.00006403629,0.0000051097572,0.000010855206,0.000020302678,0.001940867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959425,0.0023134851,0.001096966,0.000118816766,0.00006474421,0.0004635438],"domain_scores_gemma":[0.99622,0.0021909832,0.0008963036,0.00041408243,0.00026230302,0.000016314183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025616554,0.00021623982,0.00042409793,0.0002557785,0.0005239946,0.000034262568,0.00082001183,0.00037507858,0.0004854768],"category_scores_gemma":[0.001075625,0.00011891619,0.00015692052,0.00019436628,0.00090504123,0.00013855897,0.00011945181,0.0019294264,0.0003125053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057409564,0.00015459543,0.0001430914,0.0000018453518,0.00028607046,0.000008260401,0.0007887336,0.0000029709795,0.9863474,0.0013303556,0.00040359938,0.0047921506],"study_design_scores_gemma":[0.0034438372,0.0012254309,0.017503692,0.000045370183,0.00007639013,0.0009382592,0.0005186136,0.0000031452767,0.94481474,0.0010828498,0.030199861,0.00014778177],"about_ca_topic_score_codex":0.000063347965,"about_ca_topic_score_gemma":0.00007717296,"teacher_disagreement_score":0.041532602,"about_ca_system_score_codex":0.000058072565,"about_ca_system_score_gemma":0.00012985541,"threshold_uncertainty_score":0.8382505},"labels":[],"label_agreement":null},{"id":"W1948441138","doi":"10.4049/jimmunol.181.10.6859","title":"Dendritic Cell Differentiation Induced by a Self-Peptide Derived from Apolipoprotein E","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Robarts Clinical Trials; Western University","funders":"Howard Hughes Medical Institute","keywords":"CD86; Cell biology; CD11c; Dendritic cell; Biology; T cell; Immune system; Antigen-presenting cell; Splenocyte; Signal transduction; CD40; Follicular dendritic cells; Flow cytometry; p38 mitogen-activated protein kinases; Cytotoxic T cell; Molecular biology; Immunology; MAPK/ERK pathway; In vitro","score_opus":0.009279927540141454,"score_gpt":0.20102882665179456,"score_spread":0.1917488991116531,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1948441138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98812205,0.009810232,0.00048430992,0.0005370404,0.0007118769,0.00015025887,0.000004660416,0.000029884459,0.0001496877],"genre_scores_gemma":[0.99763626,0.0016190073,0.000076715434,0.00011658221,0.000057247442,0.0000047791145,0.000033451946,0.000017060005,0.00043890887],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997884,0.001034235,0.0006243278,0.00009915457,0.00005918879,0.00029910408],"domain_scores_gemma":[0.99854213,0.00036748766,0.0006310531,0.00028514618,0.00015941504,0.00001474737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003465622,0.00017426237,0.00035162776,0.0001419095,0.00031383778,0.000007945212,0.0004358141,0.0002870052,0.00033963812],"category_scores_gemma":[0.00010955295,0.000120628676,0.00012279146,0.00010298646,0.00016175877,0.00018184209,0.00007197486,0.0006424548,0.0003508524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007119583,0.00013431707,0.00014947608,0.0000029238615,0.00038433823,0.0000064472797,0.0022091453,0.0000013486803,0.9942434,0.000017946857,0.0013286142,0.0008101127],"study_design_scores_gemma":[0.002255248,0.00050241384,0.023297949,0.000023460909,0.00012450955,0.00064116274,0.00047171584,0.0000032131588,0.96922684,0.00015590062,0.0031655605,0.00013204615],"about_ca_topic_score_codex":0.0002741414,"about_ca_topic_score_gemma":0.0000073506167,"teacher_disagreement_score":0.025016552,"about_ca_system_score_codex":0.000076502336,"about_ca_system_score_gemma":0.000121471436,"threshold_uncertainty_score":0.49190947},"labels":[],"label_agreement":null},{"id":"W1951243282","doi":"10.1017/cbo9780511546198.047","title":"Endothelium: A Critical Detector of Lipopolysaccharide","year":2007,"lang":"en","type":"book-chapter","venue":"Cambridge University Press eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipopolysaccharide; Microbiology; Bacteria; Bacterial outer membrane; Gram-negative bacteria; Secretion; Biology; Lipid A; Haemophilus influenzae; Pathogenic bacteria; Salmonella; Chemistry; Immunology; Escherichia coli; Antibiotics; Biochemistry; Gene","score_opus":0.024486108966512186,"score_gpt":0.22672362980090507,"score_spread":0.2022375208343929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1951243282","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017862065,0.0011594185,0.00057828485,0.000011805203,0.00054181815,0.00027717155,0.00018561838,0.00009727276,0.9953624],"genre_scores_gemma":[0.019852372,0.00012907805,0.00004435373,0.000030653915,0.0000511724,4.8519695e-7,0.000056450077,0.000036855276,0.97979856],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99888,0.0000789598,0.00032733794,0.0003249163,0.000070041606,0.0003187368],"domain_scores_gemma":[0.99871594,0.00032122212,0.00023736732,0.00047068286,0.00021730708,0.000037465117],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018348808,0.0003034754,0.0005017008,0.00032781452,0.0001358878,0.000007929642,0.0003743868,0.00081253954,0.00007995391],"category_scores_gemma":[0.00006315103,0.00034433947,0.0002853019,0.000005697701,0.00059081166,0.000066122455,0.00021207816,0.0005602792,0.0001321794],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087856397,0.000014049241,9.090772e-7,0.0000997083,0.00029493799,0.000097173885,0.000052178246,1.1201738e-7,0.17202225,0.82011515,0.0038562715,0.0025686591],"study_design_scores_gemma":[0.0005714345,0.000104617095,0.0000073689384,0.00014345914,0.00022972889,0.000052095227,0.00002558895,8.993314e-7,0.3449346,0.0000073165334,0.6536729,0.00025001483],"about_ca_topic_score_codex":0.0001543592,"about_ca_topic_score_gemma":0.0000022103554,"teacher_disagreement_score":0.8201079,"about_ca_system_score_codex":0.00009883957,"about_ca_system_score_gemma":0.00012557706,"threshold_uncertainty_score":0.9999009},"labels":[],"label_agreement":null},{"id":"W1951507118","doi":"10.4049/jimmunol.180.6.3729","title":"Identification of RNA Sequence Motifs Stimulating Sequence-Specific TLR8-Dependent Immune Responses","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":314,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Canadian Pharmacists Association","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service","keywords":"TLR7; Immune system; Biology; RNA; Innate immune system; Cell biology; Molecular biology; Immunology; Toll-like receptor; Gene; Genetics","score_opus":0.04399622455842885,"score_gpt":0.2773638023804603,"score_spread":0.23336757782203146,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1951507118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97767997,0.019040886,0.0012919887,0.00058485643,0.00108051,0.00018549507,0.000009571826,0.000022703369,0.00010399472],"genre_scores_gemma":[0.9930685,0.0053652762,0.0000804975,0.000025321435,0.000046723126,0.0000033049873,0.000010884834,0.000019708259,0.0013797564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99603903,0.0016053624,0.001725509,0.00014760124,0.00013064836,0.00035187084],"domain_scores_gemma":[0.99600744,0.00091432163,0.0018946894,0.0005857462,0.00058338855,0.000014407877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024787292,0.00021046403,0.0005260215,0.00036890677,0.00042979093,0.000010083984,0.00080050674,0.0002663054,0.00021431605],"category_scores_gemma":[0.0006277405,0.00015116949,0.000195123,0.00026981308,0.000920037,0.00034922632,0.000120760225,0.0007154287,0.00018549706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026949928,0.00007803343,0.0001858473,0.000008849228,0.00030503253,0.000026650649,0.0026556775,0.0003868268,0.9883384,0.00037365002,0.000119106284,0.0048269513],"study_design_scores_gemma":[0.0013385518,0.0006334001,0.015198051,0.00007870465,0.00006918335,0.0047590714,0.0010513283,0.000026569567,0.97518754,0.00027945745,0.0012293915,0.00014877525],"about_ca_topic_score_codex":0.000057136855,"about_ca_topic_score_gemma":0.0000013070055,"teacher_disagreement_score":0.0153885335,"about_ca_system_score_codex":0.0001303438,"about_ca_system_score_gemma":0.00025909767,"threshold_uncertainty_score":0.61645126},"labels":[],"label_agreement":null},{"id":"W1954407400","doi":"10.1111/j.1365-2613.2010.00742.x","title":"Expression of toll-like receptor 9 in lungs of pigs, dogs and cattle","year":2010,"lang":"en","type":"article","venue":"International Journal of Experimental Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"TLR9; Innate immune system; Immunostaining; Toll-Like Receptor 9; Biology; TLR4; Receptor; Antibody; Toll-like receptor; Immune system; Pathology; Blot; Immunohistochemistry; Immunology; Gene expression; Medicine; Gene; Biochemistry","score_opus":0.00652132991367261,"score_gpt":0.2707345454370346,"score_spread":0.264213215523362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1954407400","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99588746,0.0016964709,0.000024780356,0.00015026871,0.0019060887,0.00004987441,0.0000077864415,0.0000021115793,0.00027517488],"genre_scores_gemma":[0.9993236,0.0000878468,0.0003926273,0.000033155866,0.00003596003,0.0000022897177,0.000014109033,0.000005318625,0.00010510112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915355,0.00010884857,0.0005132374,0.00008077906,0.000057525875,0.00008604821],"domain_scores_gemma":[0.9992619,0.00008976537,0.0004205511,0.000076975804,0.00013943657,0.000011361754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002796307,0.00007428423,0.0002146745,0.00024082267,0.000014123967,0.000003180944,0.00019754138,0.00014481465,0.00044962115],"category_scores_gemma":[0.000085079184,0.00006295704,0.000059375772,0.000030803792,0.00019565222,0.00014318705,0.00007739064,0.00022272827,0.000008543477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000842049,0.00018803465,0.005401829,0.000003112814,0.000029904397,0.000015415624,0.0014005135,0.0000012009879,0.9905764,0.00043089717,0.00033310577,0.0007775705],"study_design_scores_gemma":[0.0015271816,0.0002856942,0.013608748,0.000051451443,0.0000041869607,0.00067736156,0.00051834347,7.8152937e-7,0.9815807,0.00006499541,0.0016306088,0.000049994196],"about_ca_topic_score_codex":0.000026119164,"about_ca_topic_score_gemma":0.000004648351,"teacher_disagreement_score":0.008995714,"about_ca_system_score_codex":0.000020053214,"about_ca_system_score_gemma":0.00003991946,"threshold_uncertainty_score":0.49230364},"labels":[],"label_agreement":null},{"id":"W1963520725","doi":"10.1128/jvi.76.1.427-431.2002","title":"Interleukin-1α Released from Epithelial Cells after Adenovirus Type 37 Infection Activates Intercellular Adhesion Molecule 1 Expression on Human Vascular Endothelial Cells","year":2002,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa; Dalhousie University","funders":"","keywords":"Biology; Cell adhesion molecule; Endothelial stem cell; Intercellular adhesion molecule; Intercellular Adhesion Molecule-1; Inflammation; Endothelium; Cell biology; Cell adhesion; Extravasation; Immunology; Molecular biology; Cell; In vitro","score_opus":0.014438874574157748,"score_gpt":0.23244095890158128,"score_spread":0.21800208432742355,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963520725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956755,0.0015202013,0.00027673252,0.00009428667,0.002110638,0.00015265009,0.00001533221,0.00002822612,0.00012645616],"genre_scores_gemma":[0.99785125,0.001026898,0.00004643981,0.00023620551,0.00030131525,0.0000064867586,0.000026468066,0.000035191664,0.00046975265],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997631,0.00093314133,0.0007315232,0.00027108585,0.000102443926,0.00033078325],"domain_scores_gemma":[0.9986305,0.00025547348,0.0006020611,0.00032505632,0.00014384098,0.00004303254],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003139982,0.00027948734,0.00048194273,0.00035440066,0.00014898369,0.000025998233,0.0002499746,0.000559189,0.00317739],"category_scores_gemma":[0.00011643435,0.00022506922,0.000315564,0.00011293129,0.0001313487,0.0002419058,0.000080706304,0.0008287091,0.0013684669],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003828773,0.0003348637,0.000114077906,0.000010038448,0.00019359727,0.00009783405,0.00069523946,0.000039812076,0.99175644,0.000007448569,0.0014780007,0.0014438507],"study_design_scores_gemma":[0.002514713,0.0026011218,0.0017829437,0.00015476214,0.000101898564,0.000060344573,0.000034974524,0.000019430592,0.9697642,0.00009744851,0.022669703,0.00019848511],"about_ca_topic_score_codex":0.00007691668,"about_ca_topic_score_gemma":0.0000045544643,"teacher_disagreement_score":0.02199229,"about_ca_system_score_codex":0.00010440196,"about_ca_system_score_gemma":0.00002383647,"threshold_uncertainty_score":0.9994091},"labels":[],"label_agreement":null},{"id":"W1963716219","doi":"10.1139/y07-038","title":"5-HT<sub>2A</sub> serotoninergic receptor in the locus coeruleus participates in the first phase of lipopolysaccharide-induced fever","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Locus coeruleus; Serotonergic; Lipopolysaccharide; Receptor; Endocrinology; 5-HT receptor; Internal medicine; Serotonin; Chemistry; Medicine; Biology; Central nervous system","score_opus":0.02066557123243737,"score_gpt":0.2877108624093518,"score_spread":0.26704529117691445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963716219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99415845,0.0023132903,0.0000033223048,0.0023589912,0.0008356854,0.00026909905,0.000008086818,0.0000022553124,0.000050830873],"genre_scores_gemma":[0.99817204,0.00021035805,0.0000024240956,0.0014604663,0.00010896839,0.000016943535,0.000011270374,0.000007737807,0.000009797989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99783736,0.00082180725,0.0006588929,0.00014164185,0.000034146342,0.00050613895],"domain_scores_gemma":[0.99861467,0.0007585467,0.00034644676,0.0001347415,0.00009379192,0.000051830513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019269359,0.00016348068,0.00037860748,0.0003678332,0.00017863065,0.0000065692493,0.0004000103,0.00027836533,0.00042331],"category_scores_gemma":[0.00008883008,0.000105546984,0.00008336673,0.00023517293,0.00041721697,0.000116337535,0.000016502478,0.0007330323,0.0000234897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083451497,0.000117284806,0.0011959985,0.000023484792,0.00009793776,0.000090482776,0.004329126,0.000025362808,0.989258,0.00025535363,0.0021551515,0.0016173213],"study_design_scores_gemma":[0.0033109337,0.0006692584,0.015453918,0.000028099172,0.00006629155,0.0002614987,0.0010015981,0.0000063750413,0.9707819,0.00024452916,0.008057342,0.00011824391],"about_ca_topic_score_codex":0.0010710262,"about_ca_topic_score_gemma":0.005983024,"teacher_disagreement_score":0.018476069,"about_ca_system_score_codex":0.000049577775,"about_ca_system_score_gemma":0.00033976682,"threshold_uncertainty_score":0.46349475},"labels":[],"label_agreement":null},{"id":"W1963804886","doi":"10.1038/sj.gene.6364157","title":"Differential cytokine genotype frequencies among Canadian Aboriginal and Caucasian populations","year":2004,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Biology; Genotype; Genetics; Differential (mechanical device); Allele frequency; Evolutionary biology; Gene","score_opus":0.01265751613572882,"score_gpt":0.23848556219406836,"score_spread":0.22582804605833953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963804886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99516594,0.0035009799,0.00011849107,0.00030638004,0.00032896982,0.000117038515,0.000026218922,0.000024804438,0.00041117263],"genre_scores_gemma":[0.9986314,0.00061578746,0.000071169256,0.00003875109,0.000027870816,0.0000070979145,0.00020556887,0.000008253039,0.00039409718],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993655,0.00008172688,0.00015940296,0.00012320666,0.000018799332,0.0002513272],"domain_scores_gemma":[0.99968326,0.000013032672,0.000045303364,0.00017054478,0.000045107645,0.00004276363],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007963557,0.00012412362,0.0001418754,0.00012752999,0.00065875973,0.000035850026,0.000074453994,0.00014644934,0.00019084419],"category_scores_gemma":[0.000014882352,0.00011240524,0.000028015738,0.00007541918,0.00019911947,0.0001417868,0.000026983653,0.00017298973,0.000031334668],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012696323,0.000049897917,0.06427622,0.00002746122,0.00014104323,0.0000110093915,0.002825607,0.000018314808,0.89960384,0.016129443,0.00010436683,0.016685832],"study_design_scores_gemma":[0.00081736915,0.0001061525,0.93083227,0.00002084765,0.00004586778,0.00009510473,0.00044850385,0.0000046677646,0.048354305,0.00075530104,0.018321713,0.00019787929],"about_ca_topic_score_codex":0.2673455,"about_ca_topic_score_gemma":0.107879415,"teacher_disagreement_score":0.86655605,"about_ca_system_score_codex":0.00005094794,"about_ca_system_score_gemma":0.00014306267,"threshold_uncertainty_score":0.90839946},"labels":[],"label_agreement":null},{"id":"W1963925952","doi":"10.1038/sj.thj.6200088","title":"Rapid in vivo induction of leukocyte tissue factor mRNA and protein synthesis following low dose endotoxin administration to rabbits","year":2001,"lang":"en","type":"article","venue":"The Hematology Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"In vivo; Tissue factor; Disseminated intravascular coagulation; Sepsis; Platelet; Lipopolysaccharide; Messenger RNA; Medicine; Peripheral blood mononuclear cell; Internal medicine; Immunology; Coagulation; Andrology; Pharmacology; Biology; In vitro; Biochemistry","score_opus":0.01676275036129114,"score_gpt":0.25625589133564985,"score_spread":0.23949314097435873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1963925952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962872,0.0013833964,0.00013140906,0.0013150596,0.0003501061,0.0003615979,0.0000014420622,0.000013575907,0.00015615985],"genre_scores_gemma":[0.9993154,0.00017182683,0.000066693145,0.0000315143,0.000028717652,0.00003037759,0.0000017025583,0.000009996673,0.00034376426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846077,0.0005968855,0.000501087,0.00013756593,0.00004618383,0.00025753537],"domain_scores_gemma":[0.9992945,0.00023333188,0.00024674102,0.00015730363,0.000044359243,0.000023745148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006539709,0.00013633886,0.00032415133,0.00024377368,0.00019501333,0.00001680564,0.00014789194,0.00021785041,0.00033116713],"category_scores_gemma":[0.0004120227,0.000100298115,0.000061572966,0.00015781664,0.00008904807,0.00018916847,0.00003552946,0.00034803487,0.00004047819],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096422783,0.000053836764,0.00054655166,0.000012369299,0.00007737893,0.000048908074,0.0011007686,0.000002379169,0.98163766,0.00023311736,0.00010136847,0.015221443],"study_design_scores_gemma":[0.00082015194,0.00023148124,0.0051157027,0.00016036184,0.000022229104,0.0040003085,0.00042313855,0.0000029175064,0.98672235,0.00012658902,0.002274245,0.00010054585],"about_ca_topic_score_codex":0.00001757731,"about_ca_topic_score_gemma":0.000020789903,"teacher_disagreement_score":0.0151208965,"about_ca_system_score_codex":0.00003892003,"about_ca_system_score_gemma":0.00009715371,"threshold_uncertainty_score":0.40900385},"labels":[],"label_agreement":null},{"id":"W1964088440","doi":"10.1186/cc5428","title":"Changes in sublingual microvascular flow during experimental human endotoxemia","year":2007,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Microcirculation; Sepsis; Lipopolysaccharide; Perfusion; Oxygen delivery; Pharmacology; Immunology; Anesthesia; Intensive care medicine; Cardiology; Internal medicine; Oxygen","score_opus":0.013784423778970796,"score_gpt":0.3037640735584463,"score_spread":0.2899796497794755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964088440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99260944,0.0057721967,0.000020957441,0.00010935788,0.00033250882,0.0001231004,0.0000023321215,0.00005053446,0.0009795837],"genre_scores_gemma":[0.9995128,0.000004641575,0.000048395243,0.00006122264,0.00009513764,0.000013819208,0.00009788411,0.0000133361145,0.00015279159],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990648,0.000089500885,0.00020107586,0.00020578985,0.0000347158,0.00040412924],"domain_scores_gemma":[0.9996521,0.00007881125,0.000014676877,0.00017304618,0.00006091912,0.000020486166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020568464,0.00011912881,0.00015959186,0.00015145572,0.00017070229,0.000015342452,0.00010740421,0.00020862985,0.00046738182],"category_scores_gemma":[0.00013296766,0.0001216745,0.00006704764,0.000080621256,0.00014771742,0.00006976508,0.00006077774,0.00023523341,0.00014172024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000118552125,0.00003992822,0.0006284628,0.00004606178,0.000010480453,0.0000741145,0.0028575186,3.8263005e-7,0.9948738,0.0005565313,0.000026135043,0.0007679997],"study_design_scores_gemma":[0.0009955543,0.00009654234,0.007733814,0.000037130965,0.000008678026,0.000056821664,0.007305872,3.2829584e-7,0.9812194,0.000012943577,0.0023906415,0.00014227047],"about_ca_topic_score_codex":0.000024705058,"about_ca_topic_score_gemma":0.00008693331,"teacher_disagreement_score":0.01365443,"about_ca_system_score_codex":0.00010735092,"about_ca_system_score_gemma":0.000017770712,"threshold_uncertainty_score":0.51175034},"labels":[],"label_agreement":null},{"id":"W1964273667","doi":"10.1002/glia.20512","title":"Bacteria and PAMPs activate nuclear factor κB and Gro production in a subset of olfactory ensheathing cells and astrocytes but not in Schwann cells","year":2007,"lang":"en","type":"article","venue":"Glia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Olfactory ensheathing glia; Cell biology; Microglia; Neuroglia; Innate immune system; Borrelia burgdorferi; Chemokine; Olfactory system; Immunology; Immune system; Olfactory bulb; Neuroscience; Inflammation; Central nervous system; Antibody","score_opus":0.012888286603420226,"score_gpt":0.20948139610441222,"score_spread":0.19659310950099199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964273667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990705,0.00038828913,0.0000062554727,0.00004834783,0.00023776309,0.00018835647,0.000016390963,0.000014017815,0.000030025385],"genre_scores_gemma":[0.9994837,0.0002646345,0.00007138866,0.0000145334625,0.000014687879,0.0000018214913,0.000013697758,0.00001021107,0.00012530157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991398,0.00012441224,0.0002761482,0.00021669257,0.000023767438,0.00021920158],"domain_scores_gemma":[0.9996626,0.00008752722,0.00010243741,0.00010965402,0.00002247427,0.000015308744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037994352,0.00012423872,0.00021749154,0.00019850396,0.000056136716,0.000014048409,0.000040439823,0.0001829781,0.000036851772],"category_scores_gemma":[0.000049550115,0.00011841847,0.000015556747,0.00006836728,0.00012889189,0.00023802092,0.000048719623,0.0002216572,0.0000109945295],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010571129,0.00003529627,0.0035032243,0.000049807786,0.00001540069,0.000003039247,0.0026252102,4.947642e-7,0.98792964,0.0000140755155,0.000019277137,0.004747435],"study_design_scores_gemma":[0.0006956353,0.00009528851,0.21541731,0.000056919398,0.0000049368123,0.00001061276,0.00046627055,0.0000015434647,0.78220415,0.000008533894,0.00095146016,0.00008734541],"about_ca_topic_score_codex":0.0001778786,"about_ca_topic_score_gemma":0.0000650518,"teacher_disagreement_score":0.21191408,"about_ca_system_score_codex":0.000027506027,"about_ca_system_score_gemma":0.0000161692,"threshold_uncertainty_score":0.48289654},"labels":[],"label_agreement":null},{"id":"W1964450844","doi":"10.1002/eji.200526088","title":"Lipopolysaccharide primes neutrophils for a rapid response to IL-10","year":2005,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Biology; Lipopolysaccharide; STAT protein; Signal transduction; Phosphorylation; Cytokine; Activator (genetics); Messenger RNA; Receptor; STAT3; Molecular biology; Interleukin 8; Cell biology; Immunology; Gene; Biochemistry","score_opus":0.011905117751721234,"score_gpt":0.23836131225367735,"score_spread":0.22645619450195612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964450844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9803359,0.006380789,0.0021610064,0.00852013,0.0012402337,0.00030415162,0.000011281675,0.00004706234,0.0009994416],"genre_scores_gemma":[0.98952305,0.00023025817,0.0018858177,0.0007111835,0.0003314667,0.000006988111,0.000010832543,0.00005354873,0.007246836],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99631596,0.0020070283,0.00096986484,0.00019910681,0.00004718478,0.00046083165],"domain_scores_gemma":[0.99818146,0.0004884806,0.0005621308,0.00036403793,0.00036328484,0.00004057445],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0028362311,0.00022203509,0.00043898672,0.00053287204,0.00019270218,0.00002699755,0.000588104,0.000110364635,0.0007943129],"category_scores_gemma":[0.0011202473,0.00019022082,0.00027027266,0.00011615204,0.00014523746,0.00023661056,0.0001164081,0.00039170223,0.0023560312],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019423073,0.000083792154,0.0000043817045,0.0000037198297,0.00031151462,0.000026758062,0.0007552129,0.000028666755,0.87837577,0.00023975741,0.01132405,0.08942332],"study_design_scores_gemma":[0.0023476074,0.0026592878,0.0025515421,0.00003642207,0.00004199746,0.00071058515,0.00013704629,9.640833e-7,0.38464645,0.000014332369,0.6067101,0.00014372298],"about_ca_topic_score_codex":0.0000014880865,"about_ca_topic_score_gemma":4.984777e-7,"teacher_disagreement_score":0.59538597,"about_ca_system_score_codex":0.00008185852,"about_ca_system_score_gemma":0.00015613968,"threshold_uncertainty_score":0.9984208},"labels":[],"label_agreement":null},{"id":"W1964500998","doi":"10.1016/j.biocel.2014.02.002","title":"TPL2 signalling: From Toll-like receptors-mediated ERK1/ERK2 activation to Cystic Fibrosis lung disease","year":2014,"lang":"en","type":"review","venue":"The International Journal of Biochemistry & Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Cystic fibrosis; Inflammation; Innate immune system; Immunology; Receptor; Kinase; Immune system; Biology; Toll-like receptor; Signal transduction; Pattern recognition receptor; p38 mitogen-activated protein kinases; Cancer research; Medicine; Protein kinase A; Cell biology; Genetics","score_opus":0.011553448654695287,"score_gpt":0.27241866192573705,"score_spread":0.2608652132710418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964500998","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012640988,0.9802299,0.0009410603,0.00068255997,0.0046779206,0.0003677089,0.00020424373,0.000032337255,0.00022324338],"genre_scores_gemma":[0.03107573,0.9580682,0.00012659778,0.00055002206,0.0018049348,0.000050561444,0.005248092,0.0000727614,0.00300312],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99713624,0.0006164232,0.0014028078,0.0003726748,0.00015557537,0.0003162687],"domain_scores_gemma":[0.99570817,0.0015839202,0.0017559736,0.00038100505,0.00048982486,0.00008108691],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007457594,0.00045286832,0.0010485743,0.00025270978,0.0001169073,0.000056968875,0.0015895037,0.0007315549,0.00094870146],"category_scores_gemma":[0.0007117343,0.0003052604,0.00063466874,0.00014908363,0.00015447536,0.00007276091,0.00023627642,0.00088251365,0.00057587645],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018574833,0.00017118927,0.000012898745,0.00069214357,0.0021593263,0.000020404677,0.00011523722,0.000026541005,0.7960353,0.000022289645,0.02444731,0.1744399],"study_design_scores_gemma":[0.0004930398,0.00009053186,0.0000047133617,0.0022974957,0.00052312494,0.00005778919,0.000018674145,0.000008544866,0.088204645,0.000035635672,0.9079723,0.0002935386],"about_ca_topic_score_codex":0.000026011738,"about_ca_topic_score_gemma":5.6420004e-7,"teacher_disagreement_score":0.88352495,"about_ca_system_score_codex":0.0002855119,"about_ca_system_score_gemma":0.000587145,"threshold_uncertainty_score":0.9999646},"labels":[],"label_agreement":null},{"id":"W1964721809","doi":"10.1097/ccm.0b013e3181ce4aaa","title":"Nuclear factor-κB activation by edema inhibits intestinal contractile activity","year":2010,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Edema; Medicine; Intestinal mucosa; Endocrinology; Phosphorylation; Internal medicine; Myosin light-chain kinase; Myosin; Pathology; Cell biology; Biology","score_opus":0.011945939752626821,"score_gpt":0.28328739621318094,"score_spread":0.27134145646055413,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964721809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98739433,0.00032868676,0.0005058402,0.006282795,0.0011514627,0.00016584805,0.000011244876,0.00011623203,0.0040435614],"genre_scores_gemma":[0.9989457,0.0000060259144,0.000027740309,0.00040687984,0.00016955014,0.000010063765,0.00012226574,0.000018436827,0.00029331932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990015,0.00015020724,0.00023268623,0.00023889872,0.0000729763,0.00030372856],"domain_scores_gemma":[0.9986176,0.0007739467,0.000058604845,0.00022591167,0.00027515864,0.000048759284],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016410701,0.00016735005,0.00026052963,0.00007580997,0.00021763128,0.000013929699,0.00012456632,0.00031643987,0.0033149726],"category_scores_gemma":[0.0037308496,0.00013508837,0.000046200425,0.00008942515,0.00055513595,0.00024388472,0.000041604468,0.0008050987,0.00035419138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027059123,0.000049565093,0.00016806657,0.000037980186,0.000013301117,0.0000029195037,0.0007229137,1.523029e-8,0.9635928,0.0017454568,0.0061882907,0.027208053],"study_design_scores_gemma":[0.0011109418,0.0004344653,0.0051984377,0.00009101188,0.000036278165,0.00007653046,0.0015200566,0.000005725405,0.91592187,0.00010625619,0.07532587,0.00017258515],"about_ca_topic_score_codex":0.00011970215,"about_ca_topic_score_gemma":0.000008228197,"teacher_disagreement_score":0.06913758,"about_ca_system_score_codex":0.000040347193,"about_ca_system_score_gemma":0.0000473472,"threshold_uncertainty_score":0.99759614},"labels":[],"label_agreement":null},{"id":"W1964821585","doi":"10.1371/journal.pone.0054586","title":"The Herpes Simplex Virus 1-Encoded Envelope Glycoprotein B Activates NF-κB through the Toll-Like Receptor 2 and MyD88/TRAF6-Dependent Signaling Pathway","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; McMaster University","funders":"National Key Research and Development Program of China; Major State Basic Research Development Program of China; National Natural Science Foundation of China","keywords":"TLR2; HEK 293 cells; Biology; Innate immune system; Proinflammatory cytokine; Toll-like receptor; Cell biology; CD14; Transfection; Herpes simplex virus; Tumor necrosis factor alpha; Receptor; Immune system; Cell culture; Virology; Immunology; Inflammation; Virus; Biochemistry","score_opus":0.024227138504429882,"score_gpt":0.20879380609435313,"score_spread":0.18456666758992324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964821585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99101645,0.0039755213,0.00006486852,0.0031727843,0.00016800858,0.0010069177,0.00001232075,0.000101384314,0.00048174328],"genre_scores_gemma":[0.99263775,0.0010389022,0.00023195101,0.00033656863,0.00008214846,0.00033306004,0.000045922246,0.00003156282,0.0052621197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982022,0.00052406365,0.00040931386,0.0002917874,0.00011027689,0.00046236446],"domain_scores_gemma":[0.99854445,0.00068853085,0.00020028662,0.00042043487,0.00012556411,0.000020734404],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00043596685,0.00024455687,0.00029210158,0.000036151043,0.0009678726,0.00013558936,0.00035829612,0.00024126444,0.0010309411],"category_scores_gemma":[0.00021813245,0.00014128869,0.00006613085,0.000108043445,0.0002854942,0.0003668273,0.00015501554,0.0003608942,0.0012804134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028790618,0.00019021633,0.00002202049,0.00002026589,0.0004709366,9.71147e-7,0.0018650428,0.0000017328889,0.97374684,0.0003524548,0.00075323094,0.022288404],"study_design_scores_gemma":[0.0006403234,0.00014023602,0.00015897294,0.0000823214,0.0000476079,0.0000072619173,0.001253231,0.000011585796,0.9521996,0.00076825684,0.044487815,0.00020280306],"about_ca_topic_score_codex":0.0004674907,"about_ca_topic_score_gemma":0.000045995075,"teacher_disagreement_score":0.043734584,"about_ca_system_score_codex":0.000044153472,"about_ca_system_score_gemma":0.0000706067,"threshold_uncertainty_score":0.9998823},"labels":[],"label_agreement":null},{"id":"W1964906621","doi":"10.1016/j.chom.2012.04.012","title":"Amino Acid Starvation Induced by Invasive Bacterial Pathogens Triggers an Innate Host Defense Program","year":2012,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":366,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; University of Michigan; Burroughs Wellcome Fund","keywords":"Biology; Innate immune system; Host (biology); Microbiology; Starvation; Amino acid; Defence mechanisms; Biochemistry; Immunology; Ecology; Immune system; Gene","score_opus":0.013792271366875717,"score_gpt":0.23544560824104482,"score_spread":0.2216533368741691,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1964906621","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99511665,0.0017634009,0.000024423323,0.000081592225,0.0013612842,0.0008585518,0.00010059136,0.0001730939,0.000520389],"genre_scores_gemma":[0.99506533,0.00018708826,0.00016790672,0.00021025112,0.00012853724,0.00009201043,0.0031633887,0.000050016464,0.00093546585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777514,0.0005401931,0.00050280115,0.00035742155,0.000050499708,0.00077392964],"domain_scores_gemma":[0.9989357,0.00008334131,0.00031578465,0.0004418878,0.0001517876,0.000071491144],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00047847326,0.00034326653,0.00034175013,0.00017650262,0.00029781606,0.00006451806,0.0002575833,0.000555798,0.00060853054],"category_scores_gemma":[0.00009257141,0.00033196728,0.0001221887,0.00022833065,0.00014014299,0.00069046137,0.00009827112,0.00037044712,0.0014568357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060737156,0.00050375913,0.0004610332,0.000027987548,0.00006639679,0.0000022914762,0.0024080954,7.327118e-8,0.9864081,0.000021076425,0.0032025406,0.0062912554],"study_design_scores_gemma":[0.001655421,0.0005232226,0.004988476,0.00002078935,0.00006471832,0.000024575174,0.00044550785,3.7485367e-7,0.8805833,0.0000028219524,0.11133292,0.00035789143],"about_ca_topic_score_codex":0.00008320428,"about_ca_topic_score_gemma":0.000017012859,"teacher_disagreement_score":0.10813038,"about_ca_system_score_codex":0.0001161688,"about_ca_system_score_gemma":0.00013792493,"threshold_uncertainty_score":0.9999132},"labels":[],"label_agreement":null},{"id":"W1965064177","doi":"10.1074/jbc.m604958200","title":"Contribution of Interferon-β to the Murine Macrophage Response to the Toll-like Receptor 4 Agonist, Lipopolysaccharide","year":2006,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Lipopolysaccharide; Toll-like receptor; Agonist; Macrophage; Interferon; Receptor; Chemistry; Immunology; Innate immune system; Medicine; In vitro; Biochemistry","score_opus":0.008700375731794401,"score_gpt":0.23334114328916009,"score_spread":0.22464076755736567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965064177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892445,0.001408036,0.00040360514,0.008223115,0.00042223863,0.00015792191,0.000025203439,0.000010895854,0.000104468745],"genre_scores_gemma":[0.9976567,0.00005269626,0.000041228355,0.000327054,0.00022509578,0.000008716778,0.000023928043,0.0000055423866,0.0016590124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99849594,0.00038533667,0.00067554816,0.00013183207,0.000064460815,0.00024685852],"domain_scores_gemma":[0.9986486,0.0004231953,0.00038879062,0.00025363063,0.00025598198,0.000029846073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015253858,0.00014432274,0.00029914983,0.00003778122,0.00014945268,0.000018382,0.0004918279,0.00023505733,0.00052056665],"category_scores_gemma":[0.0009799491,0.00006953938,0.00018750987,0.00012455031,0.00014169671,0.0000379637,0.00013165732,0.00039989263,0.00014104803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009462015,0.000070862516,0.00011335973,0.0000042941324,0.00005580304,0.0000063770353,0.00006258686,0.000031825755,0.9765059,0.000026882331,0.012757452,0.0009026698],"study_design_scores_gemma":[0.00049121416,0.0005143118,0.0023672339,0.000036568807,0.000017375529,0.00018378084,0.00013088487,8.579348e-7,0.8317504,0.000024650379,0.1644073,0.00007542982],"about_ca_topic_score_codex":0.000018813871,"about_ca_topic_score_gemma":0.000002407681,"teacher_disagreement_score":0.15164985,"about_ca_system_score_codex":0.000081491155,"about_ca_system_score_gemma":0.00006186201,"threshold_uncertainty_score":0.569984},"labels":[],"label_agreement":null},{"id":"W1965271250","doi":"10.1016/j.amjsurg.2005.03.038","title":"Intraoperative splanchnic hypoperfusion, increased intestinal permeability, down-regulation of monocyte class II major histocompatibility complex expression, exaggerated acute phase response, and sepsis","year":2005,"lang":"en","type":"article","venue":"The American Journal of Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University","keywords":"Medicine; Splanchnic; Sepsis; Perfusion; Systemic inflammatory response syndrome; Acidosis; Immune system; Monocyte; Gastroenterology; Internal medicine; Intestinal permeability; Immunology; Hemodynamics","score_opus":0.025569960430502622,"score_gpt":0.28396025530076796,"score_spread":0.2583902948702653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965271250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729043,0.00053385383,0.00021636787,0.0015622104,0.00011500793,0.00022502425,0.000022355247,0.000018308207,0.000016455411],"genre_scores_gemma":[0.9991741,0.00011155599,0.00037860434,0.00015792827,0.000051722007,0.000008384622,0.00003413389,0.000013484809,0.00007009436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9957792,0.002506923,0.0011564335,0.00019809288,0.00011340738,0.00024594204],"domain_scores_gemma":[0.9953243,0.002330758,0.0014237545,0.0003496235,0.00052263006,0.00004892929],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002863924,0.00021970487,0.0008122891,0.0003013217,0.00034994597,0.000016357983,0.00021914185,0.00007037181,0.00038423474],"category_scores_gemma":[0.0008175473,0.00014495601,0.00017319535,0.00032253942,0.0011154091,0.00030536883,0.00011113165,0.0003669265,0.000010349373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.027562324,0.0003371175,0.0047858376,0.000008488291,0.00016899299,0.0000039382126,0.0012619499,0.00003930422,0.9450188,0.0000057490615,0.0022934987,0.01851398],"study_design_scores_gemma":[0.0016601515,0.0010513306,0.44788337,0.00019301445,0.00015418523,0.0006258565,0.0005599762,0.0002540734,0.5457298,0.000042800548,0.0016416748,0.00020374056],"about_ca_topic_score_codex":0.000090048205,"about_ca_topic_score_gemma":0.000004828592,"teacher_disagreement_score":0.44309753,"about_ca_system_score_codex":0.0001372603,"about_ca_system_score_gemma":0.0003002448,"threshold_uncertainty_score":0.59111345},"labels":[],"label_agreement":null},{"id":"W1965318611","doi":"10.1371/journal.pone.0057138","title":"p62/SQSTM1 Enhances NOD2-Mediated Signaling and Cytokine Production through Stabilizing NOD2 Oligomerization","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research; Universität zu Köln","keywords":"NOD2; Muramyl dipeptide; Cell biology; Peptidoglycan; Inflammasome; Signal transduction; Biology; Receptor; Pattern recognition receptor; TLR4; Ubiquitin; Scaffold protein; Chemistry; Innate immune system; Biochemistry","score_opus":0.024891362326610437,"score_gpt":0.21027899124326335,"score_spread":0.18538762891665292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965318611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996205,0.0015465559,0.00020104398,0.00089231704,0.00016964896,0.0005135871,0.000003660123,0.00012775951,0.0003404618],"genre_scores_gemma":[0.9974844,0.0006964632,0.0004787373,0.00008111493,0.000087162625,0.00008825689,0.00024404032,0.000018741177,0.00082111],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894375,0.00016408408,0.00031566998,0.00026640802,0.000059530146,0.00025058584],"domain_scores_gemma":[0.999375,0.00010948381,0.00015465885,0.00018153238,0.00016662783,0.000012723799],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001849646,0.00014554121,0.00023692973,0.00008817392,0.00021267205,0.000033254204,0.00007391099,0.00015784433,0.00055094523],"category_scores_gemma":[0.00034804712,0.0001339204,0.000025411351,0.00018026037,0.000114546114,0.00062500435,0.000039909788,0.00016951756,0.0006859827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008283968,0.00021280776,0.0006761314,0.00007284458,0.00016535613,2.6934973e-7,0.0011167614,0.000004076528,0.9965903,0.0000643605,0.00006140753,0.00095285184],"study_design_scores_gemma":[0.00042165373,0.000125436,0.0028136456,0.00014057283,0.000064400825,0.000004917663,0.00033707762,0.000041671796,0.99520606,0.0001451374,0.0005376626,0.00016177059],"about_ca_topic_score_codex":0.00008740398,"about_ca_topic_score_gemma":0.0000043432324,"teacher_disagreement_score":0.0021375143,"about_ca_system_score_codex":0.000029402132,"about_ca_system_score_gemma":0.00002652717,"threshold_uncertainty_score":0.8817149},"labels":[],"label_agreement":null},{"id":"W1965394044","doi":"10.1096/fj.04-2048fje","title":"CpG motifs in bacterial DNA delay apoptosis of neutrophil granulocytes","year":2004,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Neutrophil extracellular traps; Apoptosis; DNA; CpG site; Immunology; Molecular biology; Biology; Genetics; Gene; Inflammation; DNA methylation; Gene expression","score_opus":0.009001073808547316,"score_gpt":0.2125526416944228,"score_spread":0.2035515678858755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965394044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975049,0.000649812,0.00012952,0.0007580723,0.0006802636,0.00008199399,0.000004281468,0.000009136386,0.00018205747],"genre_scores_gemma":[0.99947923,0.00020807172,0.000023835659,0.000047100286,0.0000777908,0.0000039538522,0.000013077227,0.000008050137,0.00013886872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902886,0.00025866283,0.0003767913,0.00007462343,0.000036758905,0.000224293],"domain_scores_gemma":[0.9995232,0.00007116813,0.00018065215,0.00015653345,0.00005643517,0.000011976248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004845872,0.00010156001,0.00018729376,0.00013413715,0.00016882723,0.000016678778,0.00023331353,0.00011338573,0.00039412273],"category_scores_gemma":[0.0000620034,0.00006663337,0.000102343176,0.00011395283,0.00014238103,0.00013223037,0.000035426343,0.000342862,0.00011848039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006805562,0.000054744905,0.00016664977,0.0000035796413,0.00005750309,0.0000044889157,0.0007065731,0.0001889315,0.995953,0.0005979575,0.000095950265,0.0014900533],"study_design_scores_gemma":[0.0021833275,0.00016944305,0.0046840976,0.00005022477,0.000026138498,0.00034102178,0.00018593314,0.0000012025995,0.99047637,0.0009582347,0.00084992487,0.00007405707],"about_ca_topic_score_codex":0.00008287063,"about_ca_topic_score_gemma":0.000011447081,"teacher_disagreement_score":0.0054766173,"about_ca_system_score_codex":0.00005079237,"about_ca_system_score_gemma":0.00012314622,"threshold_uncertainty_score":0.43153676},"labels":[],"label_agreement":null},{"id":"W1965611801","doi":"10.1016/j.vaccine.2010.02.081","title":"The potential of 3′,5′-cyclic diguanylic acid (c-di-GMP) as an effective vaccine adjuvant","year":2010,"lang":"en","type":"review","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; National Research Council Canada; Institute for Biological Sciences","funders":"National Research Council Canada","keywords":"Adjuvant; Biofilm; Intracellular; Virulence; Vaccine adjuvant; In vivo; Microbiology; In vitro; Cell; Biology; Chemistry; Bacteria; Immunology; Cell biology; Biochemistry; Biotechnology","score_opus":0.007752884704892773,"score_gpt":0.27851419133771393,"score_spread":0.27076130663282116,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1965611801","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012191545,0.9837478,0.00002755275,0.000086694796,0.001971623,0.0016267402,0.000034404282,0.000087276305,0.00022637293],"genre_scores_gemma":[0.0068633608,0.9898075,0.0000086113805,0.000020271757,0.00025426815,0.00022577794,0.00086925697,0.000082161474,0.0018687962],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99650586,0.0011876809,0.0011446164,0.0005201343,0.00007887202,0.0005628599],"domain_scores_gemma":[0.9970473,0.00052244257,0.0009783308,0.0012288092,0.00018139914,0.000041717783],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00087114476,0.0006237807,0.0019474707,0.0003105053,0.00041056378,0.000035743386,0.00085376855,0.0011472951,0.000460726],"category_scores_gemma":[0.0003779325,0.00036968512,0.00065550493,0.00034198177,0.000045059645,0.00017472985,0.00023154967,0.0013336501,0.0013162132],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045790058,0.00010664001,0.000003059053,0.00076570996,0.0005593218,0.00001142564,0.00005064639,1.9030988e-7,0.033299718,0.00024685168,0.00040285563,0.96409565],"study_design_scores_gemma":[0.0014454426,0.0007687105,0.00051347946,0.0013053622,0.0010954811,0.0005507959,0.000030075385,0.000001481798,0.013672574,0.00009835553,0.9801198,0.00039839523],"about_ca_topic_score_codex":0.00008137968,"about_ca_topic_score_gemma":0.000051370516,"teacher_disagreement_score":0.979717,"about_ca_system_score_codex":0.000059099013,"about_ca_system_score_gemma":0.00019948084,"threshold_uncertainty_score":0.9998755},"labels":[],"label_agreement":null},{"id":"W1967005844","doi":"10.1038/nm.1965","title":"Toll-like receptor 2 ligands on the staphylococcal cell wall downregulate superantigen-induced T cell activation and prevent toxic shock syndrome","year":2009,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University; University of Calgary; Robarts Clinical Trials","funders":"","keywords":"Superantigen; Toxic shock syndrome; Peptidoglycan; Enterotoxin; Microbiology; Biology; Lipoteichoic acid; Immune system; Toll-like receptor; Staphylococcus aureus; Immunology; T cell; Innate immune system; Cell wall; Bacteria; Escherichia coli; Biochemistry","score_opus":0.0060051741374717,"score_gpt":0.22109684433033822,"score_spread":0.2150916701928665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967005844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795186,0.002926268,0.000012659712,0.015371171,0.00058843405,0.00053374283,0.000002837997,0.000054459884,0.0009918219],"genre_scores_gemma":[0.99371916,0.00030963492,0.000009436322,0.0023895637,0.00008746815,0.00001258896,0.00013363529,0.000014322423,0.0033242032],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873513,0.00020886183,0.00032450142,0.00030985608,0.000107700216,0.00031395466],"domain_scores_gemma":[0.9991738,0.00024551724,0.00012584572,0.00035191883,0.00007118581,0.000031699823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055018,0.00025341962,0.0003208336,0.00015914133,0.00023926796,0.000012706108,0.00019243473,0.0006440909,0.00047542038],"category_scores_gemma":[0.000083624735,0.00015031153,0.00006210321,0.00019463559,0.00008808806,0.00009915624,0.00002480456,0.0009841366,0.00010682384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048576324,0.00011287324,0.000021492773,0.000017774324,0.00003462465,0.000004684368,0.0008482303,0.0000012744014,0.9880136,0.00030198708,0.007371633,0.0027860343],"study_design_scores_gemma":[0.0017617531,0.0015856305,0.010637749,0.00015642063,0.0000376584,0.000038707105,0.00017225057,0.00000803723,0.9563842,0.00010451925,0.028937029,0.00017607646],"about_ca_topic_score_codex":0.000010520359,"about_ca_topic_score_gemma":0.0000017111622,"teacher_disagreement_score":0.031629458,"about_ca_system_score_codex":0.000052639072,"about_ca_system_score_gemma":0.000042653617,"threshold_uncertainty_score":0.61295265},"labels":[],"label_agreement":null},{"id":"W1967240755","doi":"10.1139/y00-124","title":"Epinephrine causes a reduction in lymph node cell output in sheep","year":2001,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Epinephrine; Reduction (mathematics); Medicine; Internal medicine; Biology; Mathematics","score_opus":0.0115051451051507,"score_gpt":0.24373532624025382,"score_spread":0.23223018113510313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967240755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99235374,0.0048244675,0.000005072071,0.0010410746,0.0013289064,0.000090136404,0.0000029980795,0.0000034743898,0.00035011495],"genre_scores_gemma":[0.9979614,0.0010731112,0.00001337777,0.00039512094,0.000112523754,0.0000059986255,0.000013961049,0.00000804547,0.00041648024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99857575,0.00044523503,0.0004382911,0.00014371845,0.0000126883715,0.0003843001],"domain_scores_gemma":[0.9995254,0.00009431488,0.00018135605,0.0000689032,0.00006453674,0.000065445],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033760324,0.0001288435,0.00032890803,0.0006696684,0.00008135883,0.000003883955,0.00013172864,0.00025604691,0.001251208],"category_scores_gemma":[0.000025471587,0.00012320407,0.000047331403,0.00019023505,0.00022927577,0.0001462352,0.00001434265,0.00042245752,0.000046135254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058542594,0.00004666824,0.009563262,0.000021563583,0.000042899082,0.00016293289,0.0006299658,0.00019458457,0.98563546,0.00004190202,0.0012635036,0.0018118436],"study_design_scores_gemma":[0.007701626,0.00040326218,0.27162442,0.000060023627,0.00006886058,0.0026623914,0.00048067933,0.00004240512,0.6646751,0.00090165675,0.051058453,0.0003211072],"about_ca_topic_score_codex":0.0020982681,"about_ca_topic_score_gemma":0.0014597161,"teacher_disagreement_score":0.32096034,"about_ca_system_score_codex":0.000105035186,"about_ca_system_score_gemma":0.00045639576,"threshold_uncertainty_score":0.9996618},"labels":[],"label_agreement":null},{"id":"W1967463201","doi":"10.1080/10425170701295856","title":"Molecular cloning and expression analysis of chicken <i>MyD88</i> and <i>TRIF</i> genes","year":2007,"lang":"en","type":"article","venue":"DNA sequence","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Luonnontieteiden ja Tekniikan Tutkimuksen Toimikunta; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"TRIF; Gene; Biology; Open reading frame; Complementary DNA; Cloning (programming); Sequence analysis; Innate immune system; Genetics; Coding region; Peptide sequence; Toll-like receptor; Molecular biology; Receptor","score_opus":0.010015885852093013,"score_gpt":0.24956128970382493,"score_spread":0.23954540385173193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967463201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98857677,0.0091815395,0.0016945635,0.00004789368,0.00004783517,0.000072870585,0.000005331621,0.000018799481,0.00035437974],"genre_scores_gemma":[0.9990582,0.00048632847,0.0002269581,0.00007793448,0.0000051830084,0.0000022959978,0.00004664232,0.000005130912,0.00009133575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993104,0.000083862076,0.00022777145,0.00017349097,0.000029443905,0.00017507191],"domain_scores_gemma":[0.99956226,0.00010695959,0.00011402634,0.00016128644,0.000040790812,0.000014663478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042598473,0.00009092767,0.00020587366,0.00019595055,0.00008405308,0.000007761221,0.000071738825,0.00012780141,0.00002016016],"category_scores_gemma":[0.000046204335,0.000080346785,0.00004508201,0.00025361485,0.00016528058,0.000098549914,0.000052987896,0.000088228604,0.000004099577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009126372,0.000008379097,0.003224896,0.000010664293,0.0001409555,0.000006583768,0.00038386547,0.000012268422,0.987698,0.00038130794,0.000012365096,0.008029415],"study_design_scores_gemma":[0.0002568737,0.00004257424,0.007640714,0.000024601484,0.00015496912,0.000018584678,0.000114539595,0.000025917621,0.9892605,0.000048449787,0.0023233222,0.00008896397],"about_ca_topic_score_codex":0.000069643465,"about_ca_topic_score_gemma":0.000008227001,"teacher_disagreement_score":0.010481404,"about_ca_system_score_codex":0.000008213923,"about_ca_system_score_gemma":0.0000146959255,"threshold_uncertainty_score":0.32764468},"labels":[],"label_agreement":null},{"id":"W1967488340","doi":"10.1016/j.bbrc.2006.11.132","title":"A phosphorylation site in the Toll-like receptor 5 TIR domain is required for inflammatory signalling in response to flagellin","year":2006,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia; Vancouver Coastal Health Research Institute","funders":"Canadian Institutes of Health Research; Health Canada; Vancouver Coastal Health Research Institute","keywords":"TLR5; Flagellin; Phosphorylation; Cell biology; Toll-like receptor; HEK 293 cells; Phosphatidylinositol; Biology; Tyrosine phosphorylation; Chemistry; Receptor; Signal transduction; Biochemistry; TLR4; TLR2; Innate immune system","score_opus":0.036692990790547386,"score_gpt":0.32358748110656993,"score_spread":0.28689449031602254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1967488340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9847436,0.0013522353,0.0000956103,0.012681767,0.000024759669,0.00093997887,0.00003050888,0.000019917628,0.00011164328],"genre_scores_gemma":[0.9976452,0.00017940425,0.00074272114,0.00017867699,0.00003708055,0.0004785095,0.00026682226,0.000012165787,0.00045944293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973927,0.0013082096,0.00044296018,0.000293152,0.00012852381,0.00043446542],"domain_scores_gemma":[0.99627864,0.0027753222,0.000055625893,0.000704901,0.00015553295,0.000029978666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028812797,0.0001381575,0.00019601993,0.00026683943,0.0003463176,0.000053233354,0.00063567894,0.00022884764,0.000019825155],"category_scores_gemma":[0.0004813262,0.00010833862,0.0000735617,0.0006762414,0.00044364107,0.00010121842,0.00022104995,0.0005276991,0.0001756037],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022652952,0.0002408629,0.00011345589,0.000015544798,0.00000798251,7.0357015e-7,0.0012379057,0.0000017991975,0.98861074,0.0018064965,0.004778934,0.00092027686],"study_design_scores_gemma":[0.0017223357,0.00033827525,0.009060692,0.00016162898,0.000008314425,0.000003511081,0.0008351056,0.00028111416,0.8320078,0.0038260452,0.15147977,0.00027541406],"about_ca_topic_score_codex":0.00020848321,"about_ca_topic_score_gemma":0.00006980824,"teacher_disagreement_score":0.15660295,"about_ca_system_score_codex":0.00010892306,"about_ca_system_score_gemma":0.000108704706,"threshold_uncertainty_score":0.44179207},"labels":[],"label_agreement":null},{"id":"W1968336033","doi":"10.1038/nature736","title":"Severe impairment of interleukin-1 and Toll-like receptor signalling in mice lacking IRAK-4","year":2002,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":849,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada); University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Biology; Innate immune system; Receptor; Signal transduction; Gene; Toll-like receptor; Kinase; Cell biology; Serine; Lipopolysaccharide; Homology (biology); Genetics; Immunology; Phosphorylation","score_opus":0.007184119859056167,"score_gpt":0.22021274889804035,"score_spread":0.21302862903898417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968336033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98603725,0.012421756,0.0000072129064,0.00039427105,0.00033093762,0.00012469581,0.000004372607,0.000017582712,0.0006619281],"genre_scores_gemma":[0.9976807,0.00031559917,0.00007940417,0.0001961165,0.000016681168,0.0000040550503,0.000021793325,0.000007319129,0.0016782981],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99936074,0.000107111635,0.00021120411,0.00013815457,0.000025717556,0.00015706333],"domain_scores_gemma":[0.99970406,0.0000851725,0.000083530285,0.00008534348,0.000034815228,0.000007060641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017904172,0.00009457385,0.00016255121,0.000113824244,0.000039993745,0.000006499444,0.00008938572,0.00077588815,0.00049132],"category_scores_gemma":[0.000043402557,0.00008399817,0.000036725494,0.00009685708,0.00004031211,0.000091355556,0.00004111757,0.0008865931,0.00006290724],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026318312,0.000067808534,0.0018816177,0.000048526344,0.000054283486,0.000004431762,0.0022766448,0.00001304313,0.98114824,0.00014744097,0.0051025073,0.008992296],"study_design_scores_gemma":[0.0037733752,0.00047722037,0.010175772,0.00054544664,0.000034003875,0.00017178568,0.0013273853,0.00015883496,0.8881211,0.0001172294,0.09464335,0.0004544665],"about_ca_topic_score_codex":0.000012846755,"about_ca_topic_score_gemma":0.000012658495,"teacher_disagreement_score":0.093027085,"about_ca_system_score_codex":0.00003462218,"about_ca_system_score_gemma":0.000009371849,"threshold_uncertainty_score":0.598436},"labels":[],"label_agreement":null},{"id":"W1968337792","doi":"10.1042/bj20031808","title":"Recruitment of the cross-linked opsonic receptor CD32A (FcγRIIA) to high-density detergent-resistant membrane domains in human neutrophils","year":2004,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Opsonin; Receptor; Fc receptor; Chemistry; Biophysics; Microbiology; Biology; Cell biology; Phagocytosis; Biochemistry","score_opus":0.021735571273902753,"score_gpt":0.2835815878051446,"score_spread":0.26184601653124184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1968337792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99685055,0.00054244505,0.000032695152,0.001345149,0.00079333346,0.000380871,0.000008981962,0.000014104443,0.00003189469],"genre_scores_gemma":[0.9992685,0.00008155013,0.00016262359,0.00014617862,0.00009464916,0.000015816757,0.000017998469,0.000013701769,0.00019898581],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983927,0.0002395795,0.00067721534,0.0002108343,0.00009925824,0.0003804103],"domain_scores_gemma":[0.99922264,0.000045686356,0.00025462444,0.00031945188,0.000106462765,0.000051156425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004955586,0.00017426307,0.00030381395,0.00011881473,0.00024619573,0.000026959926,0.00041339867,0.00027079554,0.00019190669],"category_scores_gemma":[0.00014481426,0.00012515298,0.00019456318,0.00021136118,0.00019038176,0.00007016367,0.00014456568,0.0005097633,0.00008172799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010383206,0.00015624057,0.0002778763,0.000011235985,0.000067376764,0.0000069896064,0.00024376083,0.00003086243,0.99704117,0.00059009396,0.00026774756,0.00026833397],"study_design_scores_gemma":[0.002639005,0.00021090056,0.03664761,0.00014774875,0.000020412797,0.000087704626,0.00004173677,1.2216034e-7,0.9576324,0.0004435124,0.001988829,0.00014002294],"about_ca_topic_score_codex":0.0000873271,"about_ca_topic_score_gemma":0.000018706573,"teacher_disagreement_score":0.039408766,"about_ca_system_score_codex":0.00034983174,"about_ca_system_score_gemma":0.00014188951,"threshold_uncertainty_score":0.510359},"labels":[],"label_agreement":null},{"id":"W1969269700","doi":"10.1016/j.rvsc.2009.10.003","title":"All three classes of CpG ODNs up-regulate IP-10 gene in pigs","year":2009,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Food Inspection Agency; University of Alberta; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"CpG site; Gene; Biology; Genetics; Molecular biology; Cell biology; Gene expression; DNA methylation","score_opus":0.13677594045692001,"score_gpt":0.4066304679939999,"score_spread":0.26985452753707984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969269700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959768,0.00075030315,0.000017142958,0.0006645351,0.0001495303,0.00022463393,0.000002572058,0.0000138556925,0.0022006226],"genre_scores_gemma":[0.99862224,0.00016489785,0.000093710165,0.000023260565,0.0000094158895,0.000013661422,0.000008749227,0.0000042010015,0.0010598509],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99799186,0.00041767332,0.00034506165,0.00033487592,0.00019061349,0.0007199023],"domain_scores_gemma":[0.99913454,0.00021494832,0.000057863737,0.00041545797,0.0001496791,0.00002749811],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003824849,0.000100801866,0.00019173181,0.001199383,0.00015260025,0.000025189574,0.0007313972,0.00012239272,0.00023507775],"category_scores_gemma":[0.00031342127,0.00009127091,0.000034642726,0.0015350693,0.0010233835,0.0004801797,0.00022807262,0.0003753253,0.00017954658],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006041136,0.0000946701,0.0004510096,0.000011282052,0.0000033743481,0.000039488034,0.00027639547,0.000024050089,0.9832847,0.0012348978,0.00011567975,0.013860311],"study_design_scores_gemma":[0.0011260299,0.0032199095,0.6988262,0.00015303027,0.0000014852804,0.00015802849,0.00018151195,0.00029220965,0.2814931,0.0022784914,0.012081939,0.00018804608],"about_ca_topic_score_codex":0.00017434917,"about_ca_topic_score_gemma":0.000013148648,"teacher_disagreement_score":0.70179164,"about_ca_system_score_codex":0.00013424036,"about_ca_system_score_gemma":0.00043016567,"threshold_uncertainty_score":0.3770699},"labels":[],"label_agreement":null},{"id":"W1969466722","doi":"10.1371/journal.pone.0006519","title":"cIAP-1 Controls Innate Immunity to C. pneumoniae Pulmonary Infection","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"European Commission","keywords":"Innate immune system; Immunity; Immunology; Medicine; Microbiology; Biology; Immune system","score_opus":0.02163265674477329,"score_gpt":0.22636793273526132,"score_spread":0.20473527599048802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969466722","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99139756,0.00069949724,0.00005281064,0.0016966552,0.000112895774,0.0003824457,0.000004524158,0.00015213841,0.005501467],"genre_scores_gemma":[0.99604464,0.00016377414,0.00003574989,0.00059021346,0.000040470997,0.00003152192,0.00008614673,0.000009491552,0.0029979763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989998,0.00024769115,0.00026524012,0.00016229895,0.00004498512,0.00028003234],"domain_scores_gemma":[0.9994415,0.00007086292,0.00008166507,0.0002897135,0.000095092066,0.000021139198],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028419145,0.00013453038,0.00025367647,0.0001699844,0.0002061648,0.000018008499,0.00012167442,0.00018699453,0.00023437027],"category_scores_gemma":[0.00019507774,0.00013247572,0.000057503457,0.00018445692,0.00003191078,0.00017271098,0.000036979767,0.00028573995,0.002192634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035180867,0.00077812106,0.0011333363,0.000008753869,0.00014256003,0.0000032906974,0.00016846042,0.0000027832496,0.98385775,0.00026401627,0.00016593024,0.013123217],"study_design_scores_gemma":[0.0006114275,0.00057275087,0.15693425,0.000093977265,0.00007356783,0.00001695433,0.000017419843,0.000014227372,0.8344308,0.00035093425,0.0066865305,0.0001971616],"about_ca_topic_score_codex":0.00007960339,"about_ca_topic_score_gemma":0.000006004347,"teacher_disagreement_score":0.15580091,"about_ca_system_score_codex":0.000051762767,"about_ca_system_score_gemma":0.00002934059,"threshold_uncertainty_score":0.9985843},"labels":[],"label_agreement":null},{"id":"W1969532200","doi":"10.1515/pac-2013-1020","title":"Structural aspects of molecular recognition in the immune system. Part I: Acquired immunity (IUPAC Technical Report)","year":2014,"lang":"en","type":"article","venue":"Pure and Applied Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"University of California, San Francisco","keywords":"Chemistry; Molecular recognition; Antigen; Epitope; Antibody; Major histocompatibility complex; Dimer; T-cell receptor; Immune system; Molecule; Computational biology; Stereochemistry; Immunology; T cell; Biochemistry; Gene; Biology","score_opus":0.006671201520258074,"score_gpt":0.21402479484520254,"score_spread":0.20735359332494446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969532200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9779159,0.0010720982,0.000027313785,0.000104508996,0.00005179404,0.00016912738,0.0000072720372,0.00003392555,0.020618083],"genre_scores_gemma":[0.99942744,0.000016443015,0.000013485241,0.000018492468,0.000026796773,0.000043768672,0.00039582388,0.000007711841,0.000050012994],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911517,0.000099136145,0.00039660072,0.00016997881,0.000045050903,0.00017407851],"domain_scores_gemma":[0.9993079,0.000087832625,0.00020794483,0.00035536263,0.00003212563,0.000008853703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052737445,0.00012938955,0.00023949321,0.000022894375,0.00009284352,0.000011592707,0.00015937789,0.00025423,0.000052291976],"category_scores_gemma":[0.00007438504,0.00009734992,0.000053209114,0.00009413159,0.0001457865,0.000031402673,0.000050770323,0.00021650128,0.000007495437],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012455846,0.000019174387,0.00002093518,0.0001133127,0.000026137935,0.00000675013,0.00010047395,0.0000013305063,0.99527115,0.0016195779,0.000034447174,0.0026621495],"study_design_scores_gemma":[0.00059794064,0.000020868485,0.001415525,0.000065557215,0.000033627693,0.0004599544,0.0005394951,0.000002820402,0.9950088,0.0008902749,0.00085015944,0.00011495507],"about_ca_topic_score_codex":0.000015137722,"about_ca_topic_score_gemma":0.000001138306,"teacher_disagreement_score":0.021511588,"about_ca_system_score_codex":0.000018808894,"about_ca_system_score_gemma":0.000024744684,"threshold_uncertainty_score":0.39698145},"labels":[],"label_agreement":null},{"id":"W1969626462","doi":"10.1016/j.cyto.2012.10.013","title":"Interleukin-10 activates Toll-like receptor 4 and requires MyD88 for cardiomyocyte survival","year":2012,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"Canadian Institutes of Health Research; Hospital Research Foundation; Manitoba Health Research Council","keywords":"Toll; Toll-like receptor; Interleukin-1 receptor; Receptor; Cell biology; Chemistry; Biology; Medicine; Internal medicine; Interleukin; Immunology; Cytokine; Innate immune system","score_opus":0.019477076639411547,"score_gpt":0.2574882585979723,"score_spread":0.23801118195856075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969626462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99258745,0.00353402,0.00038747131,0.0003120981,0.0017151369,0.000279945,0.000028495111,0.00007475571,0.0010806601],"genre_scores_gemma":[0.99025655,0.00011583527,0.0001499533,0.0000681817,0.00022704764,0.000058418394,0.0001983007,0.000021471942,0.008904243],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990679,0.00013369357,0.00022697446,0.0001701962,0.000025149635,0.00037610758],"domain_scores_gemma":[0.99936306,0.0002497706,0.000088210225,0.00021151498,0.00006183991,0.000025569816],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041427126,0.00015816918,0.00026967848,0.000089003195,0.00023674467,0.000013096204,0.00010528747,0.00018810267,0.00042711134],"category_scores_gemma":[0.00015823374,0.00013436085,0.00008596923,0.000060779934,0.00014225431,0.00028410275,0.00010940857,0.00011437407,0.000264054],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013791452,0.00003905205,0.00096027134,0.000031732634,0.000202317,3.1975475e-7,0.0009953703,3.719459e-7,0.9712397,0.0011431498,0.012205006,0.011803571],"study_design_scores_gemma":[0.00082411803,0.000119210796,0.0036115902,0.000017986395,0.000028706636,0.000021343543,0.00020161558,8.524468e-7,0.4795845,0.00002947583,0.5154384,0.00012222829],"about_ca_topic_score_codex":0.000019471545,"about_ca_topic_score_gemma":0.0000022089928,"teacher_disagreement_score":0.5032334,"about_ca_system_score_codex":0.000039748204,"about_ca_system_score_gemma":0.000021147967,"threshold_uncertainty_score":0.5479076},"labels":[],"label_agreement":null},{"id":"W1969725199","doi":"10.1111/j.1365-2249.2006.03210.x","title":"The myeloid differentiation factor 88 is dispensable for the development of a delayed host response to <i>Pseudomonas aeruginosa</i> lung infection in mice","year":2006,"lang":"en","type":"article","venue":"Clinical & Experimental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Pseudomonas aeruginosa; Biology; Microbiology; Immunology; Lung; Immune system; Tumor necrosis factor alpha; Bacteria; Medicine","score_opus":0.021164028026056513,"score_gpt":0.3253802652882619,"score_spread":0.3042162372622054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969725199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907359,0.004688216,0.001214796,0.0008360896,0.0013250051,0.0011035115,0.000014682618,0.000032471988,0.00004934794],"genre_scores_gemma":[0.99800384,0.00017370586,0.00015796971,0.00015522023,0.000037719597,0.00037530798,0.0000752628,0.000020814286,0.0010001785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997219,0.0006306724,0.0013123326,0.00034169087,0.000057314603,0.00043897875],"domain_scores_gemma":[0.9964241,0.0027299325,0.0003580133,0.0003699592,0.00010301939,0.000014978709],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011050008,0.00022591137,0.00037875827,0.00011182233,0.0005266771,0.000025406282,0.00032844738,0.00034871575,0.00010340968],"category_scores_gemma":[0.0003513769,0.00015153535,0.00019719114,0.00018887641,0.00034242994,0.00010964989,0.0001869937,0.00030895753,0.00012994159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011994812,0.00038322996,0.003761022,0.0000048646925,0.00022187804,3.6378006e-7,0.0013449255,0.0000047073822,0.97846496,0.00029868825,0.0008711874,0.0026493554],"study_design_scores_gemma":[0.0021181963,0.0004786438,0.23080327,0.0000236419,0.000020856485,0.0000054589173,0.00039417978,0.000023585264,0.74736553,0.000029151364,0.018588329,0.00014915221],"about_ca_topic_score_codex":0.00031984854,"about_ca_topic_score_gemma":0.00027485332,"teacher_disagreement_score":0.23109943,"about_ca_system_score_codex":0.00017365722,"about_ca_system_score_gemma":0.0001395821,"threshold_uncertainty_score":0.6179432},"labels":[],"label_agreement":null},{"id":"W1969954884","doi":"10.1016/j.molimm.2009.12.011","title":"Role of Hsp90 in CpG ODN mediated immunostimulation in avian macrophages","year":2010,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan","keywords":"Protein kinase B; MAPK/ERK pathway; TLR9; PI3K/AKT/mTOR pathway; Cell biology; Phosphorylation; Chemokine; Signal transduction; Biology; Hsp90; Toll-Like Receptor 9; Kinase; Nitric oxide; CpG Oligodeoxynucleotide; Chemistry; Molecular biology; Immune system; Immunology; Biochemistry; Heat shock protein; Gene expression; Endocrinology; Gene","score_opus":0.002487200969121737,"score_gpt":0.20848161149587768,"score_spread":0.20599441052675593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969954884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929627,0.0050658933,0.00005825454,0.00020279274,0.00043122238,0.00029905935,0.0000059455265,0.000037745347,0.00093636056],"genre_scores_gemma":[0.99935246,0.000091096575,0.00007650823,0.000049706792,0.00000561686,0.000051187748,0.00023516292,0.00002346607,0.00011480689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99814916,0.00044353047,0.00066125183,0.0002782607,0.000042530493,0.0004252467],"domain_scores_gemma":[0.9990622,0.00018000265,0.00020148171,0.00046870427,0.00007806062,0.0000095637115],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042650307,0.00020330674,0.00039953602,0.0006279213,0.000044972996,0.00000699414,0.00031602662,0.0006284399,0.00058357517],"category_scores_gemma":[0.00041075004,0.00021255734,0.00008816297,0.0004022383,0.00026561276,0.00012111247,0.000110808694,0.0007421927,0.00035930917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000576585,0.00013741411,0.005156264,0.000007248399,0.00006876231,0.000031270392,0.000518748,0.000032724085,0.98505074,0.0023390884,0.0000064334517,0.0060747196],"study_design_scores_gemma":[0.0020477697,0.00015596187,0.23270778,0.000024844128,0.000009814552,0.000057767604,0.00015631254,0.000046101322,0.7620517,0.0007396965,0.0018373702,0.00016488042],"about_ca_topic_score_codex":0.0006054434,"about_ca_topic_score_gemma":0.0002144764,"teacher_disagreement_score":0.22755152,"about_ca_system_score_codex":0.000040216168,"about_ca_system_score_gemma":0.00008911405,"threshold_uncertainty_score":0.8667837},"labels":[],"label_agreement":null},{"id":"W1969981758","doi":"10.1053/j.gastro.2012.09.008","title":"Sterile Inflammation in the Liver","year":2012,"lang":"en","type":"review","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":656,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; U.S. Department of Veterans Affairs","keywords":"Inflammation; Medicine; Internal medicine","score_opus":0.04333893147274765,"score_gpt":0.28098315884884534,"score_spread":0.2376442273760977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1969981758","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001165281,0.99701023,0.000037166836,0.00007631687,0.0007768133,0.000624408,0.000009322377,0.000026085174,0.00027437773],"genre_scores_gemma":[0.0012144322,0.9973091,0.000009850921,0.00010103117,0.00015386459,0.00025091838,0.00066044193,0.000021911841,0.00027844645],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964771,0.0021028114,0.000636611,0.0002184113,0.000031787884,0.00053327106],"domain_scores_gemma":[0.9990133,0.00018879147,0.00034326987,0.00042559736,0.000020104972,0.000008942431],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007641786,0.0002942608,0.0008213641,0.0002789394,0.00007292452,0.000014652805,0.0004611966,0.0005130834,0.0005045547],"category_scores_gemma":[0.000029840203,0.00018909361,0.00024266371,0.00011283611,0.00011873723,0.00012419792,0.00010335838,0.00063577964,0.0029525592],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012483101,0.00005073297,0.000061430495,0.0010719167,0.00013219871,0.000012141437,0.00050266314,1.690945e-7,0.000058622667,0.00015091115,0.00094306114,0.9968913],"study_design_scores_gemma":[0.00032434546,0.00014869975,0.00036424046,0.00045362636,0.00026817253,0.00067414204,0.000032440545,2.1081061e-7,0.000010689271,0.00000489797,0.99762356,0.00009500085],"about_ca_topic_score_codex":0.000018558721,"about_ca_topic_score_gemma":0.000049111746,"teacher_disagreement_score":0.9967963,"about_ca_system_score_codex":0.00006083973,"about_ca_system_score_gemma":0.000039473256,"threshold_uncertainty_score":0.9978238},"labels":[],"label_agreement":null},{"id":"W1970488634","doi":"10.1016/j.vetimm.2011.04.011","title":"Novel Bregs down-regulate TLR9-induced cytokine responses in sheep Peyer's patches","year":2011,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"TLR9; Biology; Immunology; Cytokine; Regulatory B cells; Lamina propria; CpG Oligodeoxynucleotide; Interleukin 10; Population; Homeostasis; Cell biology; Peyer's patch; Stimulation; Immune system; Epithelium; Endocrinology; Gene expression; Medicine; Genetics","score_opus":0.03930824802982066,"score_gpt":0.2505156728475981,"score_spread":0.21120742481777746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970488634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871988,0.008707604,0.00010450696,0.00034707115,0.0017685924,0.0004563131,0.000025430065,0.00019235822,0.0011993026],"genre_scores_gemma":[0.99670404,0.0011376996,0.00038204063,0.00023978688,0.000028559854,0.00014383665,0.00011022124,0.0000574542,0.0011963644],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9957734,0.0012933973,0.0010158354,0.0008106424,0.00004988235,0.0010568589],"domain_scores_gemma":[0.9982923,0.00032541572,0.0003410246,0.00090505765,0.000102747166,0.000033442233],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010525166,0.00059163384,0.00089610636,0.0008167797,0.00039919774,0.000021357813,0.0005763593,0.0011225602,0.00064781803],"category_scores_gemma":[0.00023722049,0.0005717262,0.00015508097,0.00035357586,0.0010477863,0.00048751917,0.000546509,0.0009835669,0.00054421986],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009056276,0.00039475417,0.002433334,0.000024310506,0.00021101942,0.00035486417,0.0041930033,3.185757e-7,0.9671325,0.0010089743,0.000028136219,0.0151624745],"study_design_scores_gemma":[0.0053251134,0.004971941,0.58925354,0.000093910705,0.0000689841,0.010305982,0.0011824365,0.0000039983124,0.3800418,0.0004978318,0.007499473,0.000754971],"about_ca_topic_score_codex":0.00052708684,"about_ca_topic_score_gemma":0.00003106097,"teacher_disagreement_score":0.58709073,"about_ca_system_score_codex":0.00008270383,"about_ca_system_score_gemma":0.00012137351,"threshold_uncertainty_score":0.9996734},"labels":[],"label_agreement":null},{"id":"W1970961181","doi":"10.1155/2010/652098","title":"The p110<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mi>α</mml:mi></mml:math>and p110<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"><mml:mi>β</mml:mi></mml:math>Isoforms of Class I Phosphatidylinositol 3-Kinase Are Involved in Toll-Like Receptor 5 Signaling in Epithelial Cells","year":2010,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Child and Family Research Institute; Vancouver Coastal Health","funders":"Canadian Institutes of Health Research; Vancouver Coastal Health Research Institute; Canada Foundation for Innovation; Crohn's and Colitis Foundation of Canada; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation; Wellcome Trust","keywords":"Algorithm; Mathematics","score_opus":0.009236449459783778,"score_gpt":0.21758733873872585,"score_spread":0.20835088927894208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1970961181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946589,0.0010330774,0.00009452216,0.0004047667,0.0028220536,0.0002349951,0.00011912288,0.00015101649,0.0004815616],"genre_scores_gemma":[0.9959963,0.0012589626,0.0004952842,0.00019506483,0.00054967275,0.00052132143,0.00071009004,0.00018105573,0.00009223084],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9946593,0.0004208161,0.0022021735,0.00085221475,0.000706525,0.0011589578],"domain_scores_gemma":[0.99460715,0.0013883455,0.0023661999,0.0012207843,0.00022656948,0.00019094376],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0028113073,0.00067465584,0.0005751062,0.00048068364,0.000800121,0.00024742977,0.000987902,0.0019036081,0.00016807676],"category_scores_gemma":[0.0014934426,0.0007439647,0.0005926421,0.0005834303,0.00096677267,0.0011578171,0.0005954483,0.0014702498,0.0011143538],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015354952,0.0001700648,0.00012812047,0.0005376093,0.00030582858,0.00006839498,0.0039334814,0.00028908695,0.2835938,0.706562,0.00039038822,0.0024857267],"study_design_scores_gemma":[0.0026240207,0.0007141086,0.00058538315,0.00087003544,0.00027826705,0.000100226454,0.00343493,0.11699791,0.8683479,0.00044841692,0.004883864,0.0007149237],"about_ca_topic_score_codex":0.0006368266,"about_ca_topic_score_gemma":0.0010561366,"teacher_disagreement_score":0.7061136,"about_ca_system_score_codex":0.000047274567,"about_ca_system_score_gemma":0.0007428144,"threshold_uncertainty_score":0.9996634},"labels":[],"label_agreement":null},{"id":"W1971064535","doi":"10.1016/j.imbio.2008.07.027","title":"Depletion of natural CD4+CD25+ T regulatory cells with anti-CD25 antibody does not change the course of Pseudomonas aeruginosa-induced acute lung infection in mice","year":2008,"lang":"en","type":"article","venue":"Immunobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"IL-2 receptor; FOXP3; Immunology; Immune system; Biology; Lung; Pseudomonas aeruginosa; Cytokine; Spleen; T cell; Medicine; Internal medicine; Bacteria","score_opus":0.010004117925337945,"score_gpt":0.24839182459608186,"score_spread":0.2383877066707439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971064535","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951812,0.0025624696,0.00002302933,0.00027585705,0.0012492099,0.0006019295,0.000026751084,0.000039866853,0.000039670944],"genre_scores_gemma":[0.9977245,0.0016346879,0.000018588406,0.00008861527,0.00003951811,0.00004219392,0.00026022232,0.000020670708,0.00017100404],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979065,0.0007070771,0.0006330947,0.00030183463,0.000051153995,0.00040031876],"domain_scores_gemma":[0.99853003,0.00025698935,0.00055337744,0.00045368893,0.00019606098,0.000009834445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000495793,0.00027125957,0.0005809672,0.00026069878,0.00018781263,0.0000039511165,0.00026903607,0.0004459834,0.000046433415],"category_scores_gemma":[0.00003366205,0.0001654428,0.00013419219,0.0002987412,0.00065777864,0.00022628061,0.00008807063,0.00047542492,0.000029139212],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012894906,0.00014815795,0.029952528,0.000032027445,0.0003443725,0.000008651606,0.0013859154,0.000006782128,0.96589065,0.00011590638,0.0000558378,0.0007696882],"study_design_scores_gemma":[0.001230081,0.00027955614,0.36652064,0.000057107587,0.00005278533,0.00023410568,0.00009703203,0.000011228892,0.6310811,0.0000046238492,0.00029355285,0.00013818518],"about_ca_topic_score_codex":0.001260306,"about_ca_topic_score_gemma":0.0001464546,"teacher_disagreement_score":0.33656812,"about_ca_system_score_codex":0.000056154204,"about_ca_system_score_gemma":0.00012376503,"threshold_uncertainty_score":0.67465615},"labels":[],"label_agreement":null},{"id":"W1971259949","doi":"10.1371/journal.ppat.1004556","title":"IL-28B is a Key Regulator of B- and T-Cell Vaccine Responses against Influenza","year":2014,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Alberta","funders":"Canadian Institutes of Health Research; Canadian Society of Transplantation; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Alberta Innovates; Canada Excellence Research Chairs, Government of Canada; Government of Canada; National Science Foundation","keywords":"Vaccination; Immunology; Biology; T cell; Influenza vaccine; Immune system; Virology","score_opus":0.01323730420358451,"score_gpt":0.22454789248620233,"score_spread":0.2113105882826178,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971259949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969056,0.0016991211,0.000031469302,0.00020405401,0.00008273752,0.00016852433,0.000050608007,0.000046221765,0.0008116233],"genre_scores_gemma":[0.9974697,0.00017389221,0.00012648547,0.00048719574,0.000025060903,0.000012453816,0.00003109914,0.000019305193,0.0016548064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879515,0.0003366082,0.00036751825,0.00022346471,0.000041070783,0.00023618499],"domain_scores_gemma":[0.9990857,0.00022988582,0.00017636697,0.00037920775,0.000106503394,0.00002233249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034233168,0.00015801507,0.00030105765,0.000155348,0.00011021408,0.000008479812,0.00011931415,0.00021506996,0.0001328968],"category_scores_gemma":[0.00024296858,0.00013991538,0.00007144358,0.00010650149,0.00007629798,0.000081806545,0.00007633983,0.00013197822,0.00023431097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067371153,0.000081113634,0.0029773246,0.000051140414,0.00007058328,0.0000016768059,0.0009004304,0.0000015932666,0.9915954,0.00015422849,0.00085697713,0.0026358417],"study_design_scores_gemma":[0.0013998206,0.0002662574,0.019441316,0.00005223102,0.00006122988,0.000010779068,0.000124558,0.00004230476,0.9265971,0.000062609215,0.051778488,0.0001632875],"about_ca_topic_score_codex":0.000007241847,"about_ca_topic_score_gemma":0.0000017789048,"teacher_disagreement_score":0.06499826,"about_ca_system_score_codex":0.000012831179,"about_ca_system_score_gemma":0.000040705352,"threshold_uncertainty_score":0.5705584},"labels":[],"label_agreement":null},{"id":"W1971378778","doi":"10.1016/j.molimm.2009.06.002","title":"Chicken TLR21 acts as a functional homologue to mammalian TLR9 in the recognition of CpG oligodeoxynucleotides","year":2009,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":262,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"TLR9; HEK 293 cells; Biology; CpG Oligodeoxynucleotide; Molecular biology; Cell biology; Toll-Like Receptor 9; Endoplasmic reticulum; Transfection; Receptor; Gene; Gene expression; Biochemistry","score_opus":0.011487466866652443,"score_gpt":0.2288245973570862,"score_spread":0.21733713049043377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971378778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896862,0.0013688629,0.00044893,0.004287411,0.00032214847,0.0004144141,0.0000074383693,0.000036759262,0.0034278554],"genre_scores_gemma":[0.9972004,0.00005257277,0.000091212605,0.0020181092,0.000016333117,0.00006352968,0.00026029133,0.000012847834,0.00028464635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980044,0.00076767855,0.00046629182,0.0002872047,0.00006178111,0.00041267765],"domain_scores_gemma":[0.99912775,0.00015922716,0.00015009803,0.00044584912,0.00010410465,0.000012974046],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000515525,0.00020291955,0.0003100743,0.000376475,0.000113282564,0.000013650674,0.00035971883,0.00035073445,0.0004494402],"category_scores_gemma":[0.000425069,0.00016889641,0.00012903342,0.00037567187,0.00016397236,0.00010362982,0.000058605292,0.00039648497,0.0012007321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000960267,0.00017978637,0.00006984326,0.00000505402,0.000095685165,0.00006171281,0.00088129006,0.000025055408,0.9749944,0.006086917,0.0005136039,0.016126359],"study_design_scores_gemma":[0.0015347735,0.0013238263,0.116150595,0.0000498232,0.000044129294,0.00058031897,0.0005424834,0.0000014538241,0.85703504,0.005636047,0.016846357,0.00025512386],"about_ca_topic_score_codex":0.00014602426,"about_ca_topic_score_gemma":0.000024614299,"teacher_disagreement_score":0.11795936,"about_ca_system_score_codex":0.000044125045,"about_ca_system_score_gemma":0.00008363755,"threshold_uncertainty_score":0.9995769},"labels":[],"label_agreement":null},{"id":"W1971386112","doi":"10.1067/msy.2002.126096","title":"Impaired activation of mitogen-activated protein kinases after hemorrhagic shock","year":2002,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University Health Network","funders":"","keywords":"p38 mitogen-activated protein kinases; Medicine; MAPK/ERK pathway; Kinase; Protein kinase A; Mitogen-activated protein kinase; Extracellular; Cytokine; Resuscitation; Immunology; Endocrinology; Internal medicine; Cell biology; Pharmacology; Biology; Anesthesia","score_opus":0.018484828468365567,"score_gpt":0.2067707915760676,"score_spread":0.18828596310770201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971386112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976886,0.0011497921,0.00002130948,0.00021688864,0.00034337744,0.00021112082,0.000006140975,0.00006333943,0.0002994125],"genre_scores_gemma":[0.99583,0.000029106795,0.000009979647,0.000041832787,0.000024182973,0.00006370032,0.00008016178,0.000014006748,0.0039070034],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990397,0.0002124956,0.00033503713,0.00015272245,0.00003704289,0.00022301685],"domain_scores_gemma":[0.9993091,0.00020781248,0.0001673297,0.00022673847,0.000078472316,0.000010503069],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017273781,0.00012754288,0.00024722863,0.00018911497,0.00006039547,0.000006482817,0.00005972771,0.00017331688,0.0025559948],"category_scores_gemma":[0.0002247177,0.000115073744,0.00013228542,0.00020004105,0.00007450442,0.00019995925,0.000023040231,0.00011146266,0.00038046495],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059663213,0.00008520221,0.001662506,0.000035501533,0.0000620649,0.0000038066546,0.00022401592,9.123566e-7,0.9825471,0.000014465886,0.0033429714,0.01142483],"study_design_scores_gemma":[0.00026088936,0.000039692433,0.010304905,0.00008065898,0.0000101030455,0.00001150331,0.00004325453,0.0000064416004,0.9809448,0.000018713434,0.008152709,0.00012632707],"about_ca_topic_score_codex":0.00004977552,"about_ca_topic_score_gemma":0.0000010225604,"teacher_disagreement_score":0.011298503,"about_ca_system_score_codex":0.000029265735,"about_ca_system_score_gemma":0.000029412719,"threshold_uncertainty_score":0.9983558},"labels":[],"label_agreement":null},{"id":"W1971388012","doi":"10.1016/j.rvsc.2013.01.024","title":"Chicken erythrocytes respond to Toll-like receptor ligands by up-regulating cytokine transcripts","year":2013,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"TLR9; TLR7; TLR3; Toll-like receptor; Biology; Receptor; Cytokine; Cell biology; Toll-Like Receptor 9; Gene; Innate immune system; Immunology; Molecular biology; Gene expression; Genetics","score_opus":0.06129719088914934,"score_gpt":0.3524983049637362,"score_spread":0.2912011140745868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971388012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947727,0.0006907051,0.000028908311,0.0020652872,0.0005630849,0.0006466312,0.000009965062,0.000047993562,0.0011747763],"genre_scores_gemma":[0.9920771,0.00008195564,0.00018674166,0.00010331102,0.000028640477,0.00012860162,0.000025093661,0.000014830044,0.0073537184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971481,0.0004811852,0.0003967947,0.0005734873,0.00029232088,0.0011080976],"domain_scores_gemma":[0.9987684,0.00034453743,0.00004786676,0.0004886439,0.00025541984,0.00009511982],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0037334086,0.00017041176,0.00022948172,0.001141189,0.00067420566,0.0001494023,0.0008999859,0.00015212076,0.0006788801],"category_scores_gemma":[0.00046801052,0.00015261337,0.000044497836,0.0021438636,0.00094157056,0.0010093543,0.0003442929,0.00051851565,0.0016077566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000552691,0.00005006309,0.00009343257,0.000016940547,0.00000619474,0.0000034847374,0.0014310365,0.0000045662073,0.9779499,0.00012137567,0.0063611506,0.0134091275],"study_design_scores_gemma":[0.00082320644,0.0023752183,0.009877906,0.00016472036,0.0000012400161,0.00010687112,0.0009095296,0.00008499103,0.8524872,0.000086794826,0.13283181,0.0002504814],"about_ca_topic_score_codex":0.00030688205,"about_ca_topic_score_gemma":0.00000327735,"teacher_disagreement_score":0.12647067,"about_ca_system_score_codex":0.00021009268,"about_ca_system_score_gemma":0.00035081562,"threshold_uncertainty_score":0.9991696},"labels":[],"label_agreement":null},{"id":"W1971534104","doi":"10.1159/000097168","title":"The Role of the Growth and Lactogenic Hormone Family in Immune Function (Part 1 of 2)","year":2006,"lang":"en","type":"review","venue":"NeuroImmunoModulation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Immune system; Biology; Receptor; Cell biology; Cell adhesion molecule; Antigen; Lymphocyte; Stromal cell; Immunology; Cancer research; Genetics","score_opus":0.01415509060792579,"score_gpt":0.22758022844971132,"score_spread":0.21342513784178552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971534104","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03221242,0.9661541,0.000005597738,0.000014366193,0.0004984045,0.0006739456,0.000012743201,0.0000126402,0.00041579327],"genre_scores_gemma":[0.21013184,0.7894608,0.0000010531754,0.000002913861,0.000016083603,0.000032611188,0.00014405976,0.000022751958,0.00018790839],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975801,0.00081362465,0.0011144751,0.00022057263,0.0000684043,0.00020282807],"domain_scores_gemma":[0.9980479,0.00036150496,0.0009981276,0.0005218218,0.0000666932,0.0000039400106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042990467,0.00025239802,0.00071361265,0.00017334864,0.0001754503,0.000013770577,0.0002843888,0.00030488338,0.0000045228517],"category_scores_gemma":[0.00010930728,0.00015488507,0.00029011094,0.0003703129,0.0002147379,0.00011195689,0.00012054978,0.00042201014,0.000012640068],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025562086,0.000063948646,0.000107135784,0.0005545749,0.00016490613,2.5061374e-7,0.000051827283,0.000008355379,0.17118232,0.0012192115,0.0000673905,0.82632446],"study_design_scores_gemma":[0.0006243417,0.00020022076,0.0629994,0.0010543447,0.000388448,0.00003147676,0.000030833617,0.000010032181,0.0046143555,0.0003307688,0.92950726,0.00020852538],"about_ca_topic_score_codex":0.00028249645,"about_ca_topic_score_gemma":0.000009230127,"teacher_disagreement_score":0.92943984,"about_ca_system_score_codex":0.0000337687,"about_ca_system_score_gemma":0.00011207506,"threshold_uncertainty_score":0.631603},"labels":[],"label_agreement":null},{"id":"W1971581880","doi":"10.1007/s00018-009-0251-8","title":"Selective effect of burn injury on splenic CD11c+ dendritic cells and CD8α+CD4−CD11c+ dendritic cell subsets","year":2010,"lang":"en","type":"article","venue":"Cellular and Molecular Life Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"Fondation des pompiers du Québec pour les grands brûlés","keywords":"CD11c; TLR4; Dendritic cell; Burn injury; CD8; Acquired immune system; Immune system; Immunology; Stimulation; Toll-like receptor; CD86; Cell biology; T cell; Biology; Chemistry; Medicine; Innate immune system; Endocrinology; Biochemistry","score_opus":0.003812091999926907,"score_gpt":0.22032912918958067,"score_spread":0.21651703718965376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971581880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925695,0.004878559,0.0001132855,0.00008596463,0.00064461236,0.00034582362,0.0000099415465,0.000028502576,0.0013237806],"genre_scores_gemma":[0.99926746,0.0002376101,0.00006190433,0.0001214361,0.000027073645,0.000016199123,0.000017256576,0.000015084266,0.0002359645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981888,0.0004550504,0.00032557047,0.0004781799,0.000116454954,0.00043596694],"domain_scores_gemma":[0.9991398,0.00032037977,0.00014202866,0.00025662498,0.00006951021,0.0000716851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089810044,0.00026123063,0.0003764543,0.0002619483,0.0003568838,0.000042179323,0.00025360644,0.00027473073,0.00007627823],"category_scores_gemma":[0.00021515432,0.00021450304,0.00010549322,0.00026855242,0.000996988,0.00014547666,0.000096013515,0.00040492244,0.00008291026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014856337,0.00004712709,0.0004538868,0.00008039242,0.0000354889,0.000011629499,0.00020189658,0.0000027416188,0.99720097,0.00065410085,0.00016989066,0.0009933185],"study_design_scores_gemma":[0.0008119979,0.001236763,0.0005548591,0.00004820907,0.00007993814,0.000029307897,0.000107877946,0.00003913391,0.99521124,0.00014642192,0.0014954347,0.00023880757],"about_ca_topic_score_codex":0.00005213566,"about_ca_topic_score_gemma":0.0000065540794,"teacher_disagreement_score":0.0066979416,"about_ca_system_score_codex":0.000009585884,"about_ca_system_score_gemma":0.00013952317,"threshold_uncertainty_score":0.874718},"labels":[],"label_agreement":null},{"id":"W1971732539","doi":"10.1086/425079","title":"Toll‐Like Receptor (TLR)–3, but Not TLR4, Agonist Protects against Genital Herpes Infection in the Absence of Inflammation Seen with CpG DNA","year":2004,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":136,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Health Sciences Centre; McMaster University Medical Centre","funders":"","keywords":"TLR9; TLR3; TLR4; CpG Oligodeoxynucleotide; TLR7; Toll-like receptor; Immunology; TLR2; Inflammation; Biology; Innate immune system; CpG site; Virology; Herpes simplex virus; Virus; Immune system; Gene expression; Gene","score_opus":0.00596479270424296,"score_gpt":0.21087434071624636,"score_spread":0.2049095480120034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971732539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99770993,0.000570485,0.00035904668,0.00037607536,0.00027105346,0.00046565456,0.000009190347,0.000025103021,0.00021343239],"genre_scores_gemma":[0.9992551,0.00043770418,0.00000797492,0.000093504896,0.0000993398,0.000026351712,0.00001618252,0.000013317492,0.00005052763],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983889,0.0006171833,0.00055669714,0.000094760246,0.00013358977,0.00020886218],"domain_scores_gemma":[0.99855745,0.0002425355,0.00071309844,0.00022370809,0.00024354285,0.000019641217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006964626,0.00017694967,0.00026251742,0.00021336033,0.00027975783,0.000034612316,0.0002198651,0.000116283525,0.000033662225],"category_scores_gemma":[0.00024651605,0.00009829661,0.0001245933,0.00029046528,0.00025965006,0.00040766678,0.000023910412,0.00031641044,0.000041283965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048231157,0.0006446648,0.011430445,0.0001306672,0.00044885982,0.000027027716,0.0046948222,0.0055230814,0.9585699,0.00034596838,0.00021917462,0.013142291],"study_design_scores_gemma":[0.0056300703,0.0022284156,0.24603467,0.00049336615,0.00019775891,0.0009873486,0.001274174,0.000007679696,0.74011004,0.00065623125,0.0020556545,0.0003245688],"about_ca_topic_score_codex":0.00028368892,"about_ca_topic_score_gemma":0.00019366134,"teacher_disagreement_score":0.23460422,"about_ca_system_score_codex":0.00012439306,"about_ca_system_score_gemma":0.00027981313,"threshold_uncertainty_score":0.40084192},"labels":[],"label_agreement":null},{"id":"W1971932400","doi":"10.1007/s00441-010-1032-2","title":"Monocyte and macrophage heterogeneity and Toll-like receptors in the lung","year":2010,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Innate immune system; Macrophage; CCL18; Immunology; Receptor; Immune system; Biology; Acquired immune system; Toll-like receptor; Phagocytosis; Monocyte; Immune receptor; Pattern recognition receptor; Cell biology","score_opus":0.05929097081881155,"score_gpt":0.383121433522331,"score_spread":0.32383046270351945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1971932400","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028642738,0.9695955,0.0000011163993,0.000061130726,0.00024664268,0.0008162554,0.0000050514545,0.000009175398,0.00062242063],"genre_scores_gemma":[0.0024035547,0.99258435,0.000009407367,0.000009383506,0.000042715794,0.00009128655,0.000082786944,0.000020944322,0.0047555766],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970877,0.0016645513,0.00032956933,0.0003999163,0.000069652175,0.00044862312],"domain_scores_gemma":[0.99879587,0.0007122441,0.00007823837,0.00034126863,0.000039559513,0.00003281963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021215647,0.00024103827,0.00061869813,0.00029171805,0.00035553554,0.000094,0.00025174333,0.00069193164,0.00007745917],"category_scores_gemma":[0.000068251604,0.00015521108,0.00005209427,0.0002090556,0.00046483535,0.00007312836,0.00027842168,0.0015423244,0.000117807096],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004097334,0.000029397546,0.000037324255,0.0026246565,0.000035396904,0.000031138654,0.00040772732,6.966299e-9,0.0021065038,0.00006788715,0.0014772967,0.9931417],"study_design_scores_gemma":[0.00030139342,0.00009883461,0.000071564886,0.0005362039,0.00004857647,0.00022021023,0.00008359572,7.881946e-7,0.002131969,0.000020263607,0.9963294,0.00015717566],"about_ca_topic_score_codex":0.00010254901,"about_ca_topic_score_gemma":0.000042438332,"teacher_disagreement_score":0.9948521,"about_ca_system_score_codex":0.000024594452,"about_ca_system_score_gemma":0.00008614842,"threshold_uncertainty_score":0.6700718},"labels":[],"label_agreement":null},{"id":"W1972044159","doi":"10.1002/eji.200737340","title":"Molecular mechanisms underlying the synergistic induction of CXCL10 by LPS and IFN‐γ in human neutrophils","year":2007,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Associazione Italiana per la Ricerca sul Cancro; Arthritis Society","keywords":"CXCL10; Chemokine; Lipopolysaccharide; STAT1; Biology; TLR4; Cell biology; Immunology; Molecular biology; Interferon; Signal transduction; Immune system","score_opus":0.013683540519574107,"score_gpt":0.24120739147948161,"score_spread":0.22752385095990751,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972044159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98759764,0.0064607295,0.0044304226,0.0003296382,0.0004370564,0.00008428399,7.923673e-7,0.0000070280016,0.00065241824],"genre_scores_gemma":[0.9995827,0.00018041852,0.000059126935,0.00005674489,0.000008891208,4.2416391e-7,0.0000059273875,0.000017036253,0.00008874297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977741,0.0010908293,0.0007501142,0.00010834121,0.000040747585,0.00023583035],"domain_scores_gemma":[0.9989915,0.00014346464,0.0005784723,0.00017786781,0.00009742368,0.000011273334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002175424,0.0001254086,0.00026050495,0.0002809681,0.000118964876,0.0000094253455,0.00025531524,0.000094460825,0.000033393873],"category_scores_gemma":[0.0001364224,0.00009394905,0.000067802626,0.00013878419,0.00026952123,0.00010366209,0.00007064944,0.00053485617,0.000013358442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031014663,0.00005315829,0.000017132406,0.0000055772466,0.0001325538,0.00007118345,0.00049231364,0.000017052627,0.98230475,0.0039978693,0.00006288042,0.012535409],"study_design_scores_gemma":[0.0024497658,0.0014297569,0.04583133,0.00010601738,0.00005898211,0.0010060356,0.001602703,0.000001089499,0.9440807,0.00080121646,0.002483624,0.00014879188],"about_ca_topic_score_codex":0.000018097155,"about_ca_topic_score_gemma":0.0000026197113,"teacher_disagreement_score":0.045814198,"about_ca_system_score_codex":0.000034127086,"about_ca_system_score_gemma":0.000026423977,"threshold_uncertainty_score":0.38311312},"labels":[],"label_agreement":null},{"id":"W1972351486","doi":"10.1111/j.1365-2567.2004.01938.x","title":"TLR9<sup>−/−</sup> and TLR9<sup>+/+</sup> mice display similar immune responses to a DNA vaccine","year":2004,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of British Columbia; The Metabolomics Innovation Centre","funders":"","keywords":"TLR9; Toll-Like Receptor 9; Immunogenicity; Immune system; DNA vaccination; CpG site; Biology; Adjuvant; Antigen; Immunization; Plasmid; Immunity; Immunology; DNA; Gene; Genetics; DNA methylation","score_opus":0.0072699200403475136,"score_gpt":0.23364425651845322,"score_spread":0.2263743364781057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972351486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97223514,0.017694615,0.00036167237,0.0073315473,0.00057345437,0.00092592125,0.0000612219,0.00032924247,0.00048717],"genre_scores_gemma":[0.9919698,0.0013318814,0.00041622922,0.0011131146,0.00012468583,0.00016802017,0.0003180195,0.00010453526,0.0044536707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9951129,0.0011157901,0.0012388498,0.0010048015,0.00011338501,0.001414249],"domain_scores_gemma":[0.99731153,0.0007553336,0.00031497478,0.0012803857,0.0002476592,0.00009009997],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010077438,0.00077437056,0.0011319091,0.00082167337,0.00075433473,0.00009370153,0.0008489338,0.0010715994,0.000735848],"category_scores_gemma":[0.0010037149,0.0007310126,0.00027070064,0.0006091293,0.0004691407,0.0005764875,0.0006502998,0.0010060001,0.003503606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00896448,0.00034621402,0.0004715446,0.000049322185,0.0010186126,0.00011538952,0.007440947,0.0007692924,0.96719116,0.003100801,0.0016312998,0.008900964],"study_design_scores_gemma":[0.015343211,0.0033646452,0.0359634,0.00036755114,0.0003736679,0.0029690734,0.0046158736,0.00009160339,0.6185835,0.0015122535,0.31499723,0.0018179707],"about_ca_topic_score_codex":0.0005529629,"about_ca_topic_score_gemma":0.00003194243,"teacher_disagreement_score":0.3486076,"about_ca_system_score_codex":0.0002470419,"about_ca_system_score_gemma":0.00030190847,"threshold_uncertainty_score":0.9995141},"labels":[],"label_agreement":null},{"id":"W1972650082","doi":"10.1152/ajpregu.00378.2003","title":"Interleukin-10 concentration determined by sandwich enzyme-linked immunosorbent assay is unrepresentative of bioactivity in murine blood","year":2003,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Bioassay; Immunoassay; Chromatography; Chemistry; Whole blood; Serum concentration; Cytokine; Enzyme; Pharmacology; Immunology; Biology; Endocrinology; Antibody; Biochemistry","score_opus":0.013835025968854841,"score_gpt":0.27246159955461485,"score_spread":0.25862657358576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1972650082","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966067,0.0021164613,0.00021134604,0.00011718515,0.00026109332,0.00031998928,0.00003763091,0.000010794788,0.00031880464],"genre_scores_gemma":[0.9990644,0.00025749384,0.00014267821,0.00013908235,0.00003018901,0.000027142296,0.0000651619,0.000015241999,0.0002586015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99432623,0.0034486374,0.0012014948,0.00047955394,0.00009631063,0.00044777285],"domain_scores_gemma":[0.9961827,0.0010165027,0.0018599635,0.0003262996,0.0005604688,0.000054092106],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005872143,0.0004808551,0.0016980408,0.00027319195,0.00012517003,0.000010900128,0.0003123787,0.00020092116,0.0004706905],"category_scores_gemma":[0.00017726279,0.00036365178,0.00026815647,0.00038864417,0.0024033876,0.00033361823,0.00006972212,0.0006753877,0.000018665985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032815537,0.00061698485,0.0011011409,0.000014960884,0.00097655103,0.0000018837032,0.005056492,0.000028685929,0.98583275,0.001251814,0.00091177673,0.0009254088],"study_design_scores_gemma":[0.0032345692,0.00383429,0.074207805,0.000106948486,0.00011057458,0.000058553665,0.006968412,0.00003716732,0.90926194,0.0007784531,0.001093098,0.0003081641],"about_ca_topic_score_codex":0.00016500433,"about_ca_topic_score_gemma":0.000020618429,"teacher_disagreement_score":0.07657079,"about_ca_system_score_codex":0.00008988653,"about_ca_system_score_gemma":0.00021665292,"threshold_uncertainty_score":0.99988157},"labels":[],"label_agreement":null},{"id":"W1973762483","doi":"10.1016/j.pep.2006.05.015","title":"Preparation and characterization of truncated human lipopolysaccharide-binding protein in Escherichia coli","year":2006,"lang":"en","type":"article","venue":"Protein Expression and Purification","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Ministry of Education, Culture, Sports, Science and Technology","keywords":"Lipid A; Escherichia coli; Bacterial outer membrane; Lipopolysaccharide; Recombinant DNA; Fusion protein; Biology; Biochemistry; Binding protein; Chemistry; Molecular biology","score_opus":0.00995191394714918,"score_gpt":0.2432774419353154,"score_spread":0.23332552798816622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973762483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99813837,0.00022482654,0.00026144926,0.000101360274,0.000031818494,0.0010696361,0.000004897647,0.000038168153,0.00012947062],"genre_scores_gemma":[0.99776316,0.000020416413,0.00014263541,0.000003619144,0.000014145961,0.00024971835,0.00043726433,0.000010015416,0.0013590383],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989089,0.0002598917,0.00043288677,0.00022437738,0.000042412667,0.0001315448],"domain_scores_gemma":[0.9994568,0.000015827172,0.00031456776,0.00014530783,0.00005729121,0.000010205312],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035437781,0.00011741889,0.00016468736,0.00017900992,0.00014804915,0.000024158593,0.000056095247,0.00021609208,0.00004972721],"category_scores_gemma":[0.000035897698,0.00010997409,0.000017314158,0.000114198934,0.00007240131,0.00029279568,0.000025027906,0.00012831991,0.00000973085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025027012,0.000074150004,0.0006111882,0.0000550118,0.0000042286497,1.6487908e-7,0.00034183625,4.704092e-7,0.99458784,0.0023663489,0.0000068386576,0.001701682],"study_design_scores_gemma":[0.0007325452,0.000100429905,0.020954048,0.00018155358,0.0000056797003,0.0000015636368,0.000052994626,0.00003792153,0.97694945,0.00027588647,0.0005956443,0.00011230826],"about_ca_topic_score_codex":0.00011170503,"about_ca_topic_score_gemma":0.000007549645,"teacher_disagreement_score":0.02034286,"about_ca_system_score_codex":0.00001909777,"about_ca_system_score_gemma":0.000020934129,"threshold_uncertainty_score":0.44846132},"labels":[],"label_agreement":null},{"id":"W1973951307","doi":"10.1051/medsci/20031910981","title":"Rôle de la réponse immunitaire innée dans le cerveau","year":2003,"lang":"fr","type":"review","venue":"médecine/sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"","keywords":"Innate immune system; Neurodegeneration; Microglia; Neuroscience; Biology; Inflammation; Central nervous system; Immune system; Immunity; Nervous system; Immunology; Medicine; Disease; Pathology","score_opus":0.026610116963466584,"score_gpt":0.3079819236128609,"score_spread":0.2813718066493943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1973951307","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025962522,0.93126285,0.00044756278,0.0008477596,0.0016373451,0.00062150735,0.00003564418,0.0000863861,0.03909842],"genre_scores_gemma":[0.014664725,0.94926286,0.0006079443,0.00030698217,0.00015196807,0.00014063786,0.00016088772,0.000072670446,0.034631312],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.987899,0.008693138,0.0012390988,0.0007940278,0.00015902499,0.0012157146],"domain_scores_gemma":[0.9960679,0.0023224005,0.0007240121,0.00070917816,0.00010755242,0.0000689959],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["sts","insufficient_payload"],"category_scores_codex":[0.006355568,0.000778127,0.0014719683,0.00057522266,0.0025347685,0.00019244949,0.0015451355,0.0014425865,0.001996528],"category_scores_gemma":[0.00085896003,0.0006622946,0.00064150884,0.0013746589,0.005107683,0.0004406087,0.00029376318,0.0012312399,0.0024094665],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037620618,0.0022264137,0.0034569253,0.00671775,0.0015453522,0.00023290057,0.0032310772,0.00019195786,0.09661667,0.31075707,0.03355409,0.5410936],"study_design_scores_gemma":[0.0010310707,0.0005968197,0.0013085082,0.0031089375,0.00033616996,0.0016802475,0.0015436932,0.000012102917,0.004982338,0.00118747,0.9834514,0.0007612378],"about_ca_topic_score_codex":0.00086649,"about_ca_topic_score_gemma":0.000044549335,"teacher_disagreement_score":0.9498973,"about_ca_system_score_codex":0.0003036056,"about_ca_system_score_gemma":0.0032933515,"threshold_uncertainty_score":0.99985373},"labels":[],"label_agreement":null},{"id":"W1974182444","doi":"10.1097/01.shk.0000191344.21228.b6","title":"THE EFFECTS OF GRANULOCYTE COLONY-STIMULATING FACTOR IN PRECLINICAL MODELS OF INFECTION AND ACUTE INFLAMMATION","year":2005,"lang":"en","type":"review","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Medicine; Granulocyte colony-stimulating factor; Pneumonia; Immunology; Cytokine; Clinical trial; Disease; Adjuvant; Intensive care medicine; Pharmacology; Internal medicine; Chemotherapy","score_opus":0.03403282958671913,"score_gpt":0.3418973637700745,"score_spread":0.30786453418335535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974182444","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.047706343,0.9507177,0.000111897585,0.00000891589,0.0003231563,0.0010203359,0.000008199549,0.000015647407,0.00008782524],"genre_scores_gemma":[0.017521955,0.98206055,0.00002372681,0.0000015471143,0.000029352157,0.000043721964,0.0000807552,0.000015650367,0.00022273468],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979459,0.00067168666,0.0009847506,0.00018191109,0.00004063848,0.00017510446],"domain_scores_gemma":[0.99711907,0.0018858799,0.0006915188,0.00023522627,0.000060350358,0.000007958426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044139987,0.00020528323,0.0009246057,0.00016884404,0.000078544384,0.000007889203,0.00010290022,0.00056388404,0.0000075238668],"category_scores_gemma":[0.00041009646,0.00014146783,0.00019844846,0.0001492621,0.00012535119,0.00012944783,0.000075087606,0.00038509545,0.000012226652],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010975631,0.000017028973,0.000060080303,0.0031730195,0.0002490389,5.142133e-7,0.00017462265,0.000024449755,0.0014121147,0.00016835457,0.000014428036,0.9945966],"study_design_scores_gemma":[0.0044176877,0.0016676771,0.004299301,0.02800206,0.002450087,0.00009576513,0.000017845852,0.0010275339,0.015585087,0.000725109,0.9407393,0.000972564],"about_ca_topic_score_codex":0.00004684989,"about_ca_topic_score_gemma":0.000042954947,"teacher_disagreement_score":0.99362403,"about_ca_system_score_codex":0.00005303952,"about_ca_system_score_gemma":0.000112684684,"threshold_uncertainty_score":0.57688904},"labels":[],"label_agreement":null},{"id":"W1974196439","doi":"10.1074/jbc.m500244200","title":"Differential Involvement of Calmodulin-dependent Protein Kinase II-activated AP-1 and c-Jun N-terminal Kinase-activated EGR-1 Signaling Pathways in Tumor Necrosis Factor-α and Lipopolysaccharide-induced CD44 Expression in Human Monocytic Cells","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Proinflammatory cytokine; Tumor necrosis factor alpha; Cell biology; Biology; Protein kinase A; Signal transduction; Transcription factor; Kinase; Inflammation; Immunology; Biochemistry","score_opus":0.028169405801879762,"score_gpt":0.24578373341006599,"score_spread":0.21761432760818622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974196439","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992597,0.00036936425,0.000013842363,0.000034909302,0.000051113355,0.0002406139,0.000012217128,0.000011363056,0.0000068942095],"genre_scores_gemma":[0.9997353,0.000064661064,0.000065249515,0.000013073321,0.00004502523,0.000013839156,0.000023559833,0.000010970689,0.000028353805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980846,0.00022901253,0.0009950039,0.00028537936,0.000086313165,0.00031970648],"domain_scores_gemma":[0.99893683,0.00010207639,0.00068941,0.00013996707,0.000073388466,0.000058314767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030315015,0.00027149465,0.00060692785,0.00014018758,0.00011252925,0.000020341859,0.00018058455,0.00041083663,0.00021922501],"category_scores_gemma":[0.000111011424,0.00020145134,0.00009418793,0.00008530599,0.00012003532,0.0001616867,0.0001705595,0.00068746397,8.8499957e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013859165,0.0004605782,0.0012208875,0.000082810766,0.00003842194,0.000061967476,0.00033555593,0.000008473161,0.99475497,0.0000018882881,0.0000018618118,0.0016466394],"study_design_scores_gemma":[0.0027674567,0.0005537993,0.0061160577,0.00048978365,0.000014483184,0.00006715542,0.00030346893,0.000012814788,0.9894082,0.00003909878,0.00001208892,0.00021560887],"about_ca_topic_score_codex":0.000092555725,"about_ca_topic_score_gemma":0.0000036596773,"teacher_disagreement_score":0.0053468156,"about_ca_system_score_codex":0.00016365109,"about_ca_system_score_gemma":0.0000545308,"threshold_uncertainty_score":0.8214947},"labels":[],"label_agreement":null},{"id":"W1974783559","doi":"10.1016/j.clim.2012.09.004","title":"Human platelets can discriminate between various bacterial LPS isoforms via TLR4 signaling and differential cytokine secretion","year":2012,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":139,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Platelet; Innate immune system; TLR4; Secretion; Cell biology; Cytokine; Platelet activation; Biology; Immunology; Inflammation; Stimulation; Receptor; Immune system; Microbiology; Biochemistry; Endocrinology","score_opus":0.031781918880669655,"score_gpt":0.30482170226806227,"score_spread":0.2730397833873926,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1974783559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945795,0.0007507249,0.00091876753,0.00029572845,0.0028959033,0.0002886724,0.0000254926,0.0001137679,0.00013145445],"genre_scores_gemma":[0.9975029,0.00013670148,0.000035050853,0.00007481536,0.00057981105,0.00002223568,0.0010852403,0.000035006946,0.0005282203],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968232,0.0008454853,0.0011079512,0.00038536146,0.000043752494,0.000794255],"domain_scores_gemma":[0.99865836,0.0004418712,0.00038906696,0.00038109464,0.00006773968,0.0000618813],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00081720157,0.0003213048,0.00073891826,0.00015493417,0.00045540868,0.000030902494,0.00025685478,0.0010268781,0.00086201215],"category_scores_gemma":[0.00020436019,0.00027094097,0.00018055193,0.00008265115,0.00071048946,0.00026043347,0.00029286463,0.0008476533,0.00033458095],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065367663,0.00024615426,0.012596761,0.00001586714,0.00062197685,0.0000047081116,0.000578278,1.7269154e-7,0.954389,0.000701007,0.00010430227,0.030088138],"study_design_scores_gemma":[0.006402071,0.0018822664,0.71334994,0.000069078014,0.0005158626,0.00023039118,0.00017861612,0.0000071202494,0.2612781,0.0010795917,0.014273316,0.00073363225],"about_ca_topic_score_codex":0.00015167665,"about_ca_topic_score_gemma":0.000015227079,"teacher_disagreement_score":0.7007532,"about_ca_system_score_codex":0.000051854804,"about_ca_system_score_gemma":0.00003810449,"threshold_uncertainty_score":0.99997425},"labels":[],"label_agreement":null},{"id":"W1975127669","doi":"10.1016/j.bmc.2013.02.024","title":"Improving the immunostimulatory potency of diethanolamine-containing lipid A mimics","year":2013,"lang":"en","type":"article","venue":"Bioorganic & Medicinal Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Lakehead University","funders":"","keywords":"Chemistry; Lipid A; Diethanolamine; TLR4; Biochemistry; Lipopolysaccharide; Toll-like receptor; Receptor; Innate immune system; Biology; Immunology","score_opus":0.006430209570671177,"score_gpt":0.19556937507353145,"score_spread":0.18913916550286028,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975127669","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99160177,0.0060624606,0.00011371356,0.0004946251,0.00035490587,0.00020077177,0.0000024529772,0.000050654184,0.0011186509],"genre_scores_gemma":[0.99783176,0.00008943267,0.000025082189,0.00011991196,0.0001326035,0.000018267947,0.000045090663,0.000019320269,0.0017185296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887246,0.0000715242,0.00046097537,0.0002043181,0.00007231584,0.00031842836],"domain_scores_gemma":[0.9989042,0.00021130308,0.0002798106,0.00043541112,0.00014761345,0.000021654954],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00036685288,0.00018734352,0.00026453132,0.00003091113,0.00015622523,0.000010358546,0.00037394135,0.00026910094,0.001464084],"category_scores_gemma":[0.0004875532,0.00012981673,0.00009266204,0.00013080602,0.000281547,0.00010108225,0.00011627022,0.00040230696,0.00020303317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009169562,0.000028788756,0.00027026754,0.00006944402,0.00008285789,0.0000013895379,0.00050687505,3.350396e-7,0.9885796,0.000011567467,0.00052534515,0.0098318895],"study_design_scores_gemma":[0.0008130746,0.000107677464,0.004062152,0.00009205009,0.00006181283,0.00010303637,0.0019490464,0.000033473396,0.99088436,0.000017948592,0.0017304865,0.00014488008],"about_ca_topic_score_codex":0.0003874087,"about_ca_topic_score_gemma":8.5778976e-7,"teacher_disagreement_score":0.009687009,"about_ca_system_score_codex":0.000053034833,"about_ca_system_score_gemma":0.00016226115,"threshold_uncertainty_score":0.9994487},"labels":[],"label_agreement":null},{"id":"W1975316538","doi":"10.1042/bst0351375","title":"Toll-like receptor 4 regulates colitis-associated adenocarcinoma development in interleukin-10-deficient (IL-10−/−) mice","year":2007,"lang":"en","type":"review","venue":"Biochemical Society Transactions","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Colitis; Immunology; TLR4; Inflammatory bowel disease; Adenocarcinoma; Exacerbation; Ulcerative colitis; Toll-like receptor; Immune system; Medicine; Cancer research; Biology; Cancer; Innate immune system; Disease; Internal medicine","score_opus":0.030664960912961656,"score_gpt":0.2776625184988175,"score_spread":0.24699755758585584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975316538","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0055229263,0.9917341,0.00040054857,0.000063571824,0.0007754607,0.000935036,0.00016639246,0.00017677639,0.00022518182],"genre_scores_gemma":[0.001981372,0.9598683,0.0004180054,0.00007961643,0.000055845256,0.00037620164,0.0044492814,0.00009839846,0.03267294],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964858,0.00032624818,0.001456158,0.0007271309,0.00012895426,0.0008756582],"domain_scores_gemma":[0.9985486,0.00046171053,0.00039764252,0.00038448043,0.00013985537,0.00006767861],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006845651,0.0006596004,0.0013837372,0.00020751156,0.00034914716,0.000039682505,0.00046588934,0.002232146,0.0032634826],"category_scores_gemma":[0.000056741286,0.0006302515,0.0011770129,0.0007094674,0.00028937453,0.000095159296,0.000045631503,0.001172298,0.0012779386],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007543075,0.0025652074,0.000006058698,0.0070433547,0.004977282,0.000016797581,0.0046448004,0.0000034338902,0.043866403,0.000059044596,0.11699803,0.8190653],"study_design_scores_gemma":[0.0007926841,0.000067037545,0.000031980973,0.0030881013,0.000363886,0.000049371003,0.00024362036,0.0000020235555,0.02752675,0.0000016860045,0.9671855,0.0006473504],"about_ca_topic_score_codex":0.000047205947,"about_ca_topic_score_gemma":0.000018554936,"teacher_disagreement_score":0.8501875,"about_ca_system_score_codex":0.0015290639,"about_ca_system_score_gemma":0.0006022971,"threshold_uncertainty_score":0.9996149},"labels":[],"label_agreement":null},{"id":"W1975396221","doi":"10.1016/j.vetimm.2003.10.001","title":"In vivo immunostimulatory effects of CpG oligodeoxynucleotide in cattle and sheep","year":2003,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"CpG Oligodeoxynucleotide; In vivo; Biology; CpG site; Innate immune system; Immune system; In vitro; Immunology; Molecular biology; Biochemistry; DNA methylation","score_opus":0.00646388322905993,"score_gpt":0.22706045369470335,"score_spread":0.2205965704656434,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975396221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9535173,0.044366624,0.000021126982,0.00009809278,0.00092672737,0.0003650104,0.0000040332397,0.00002764948,0.00067344366],"genre_scores_gemma":[0.9960118,0.0032296495,0.00009034036,0.000120178374,0.0000048394113,0.00009248371,0.000009325864,0.00002731147,0.00041405542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99678254,0.0013980904,0.0007506553,0.00045470777,0.0000286047,0.00058539666],"domain_scores_gemma":[0.9986566,0.000634847,0.00020420435,0.00044845117,0.00003984489,0.000016056143],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000679972,0.00033204554,0.00074646407,0.00067261356,0.00011887952,0.000007641437,0.00019838542,0.00061724556,0.00020632937],"category_scores_gemma":[0.00038791247,0.0003428002,0.00006323983,0.00025665938,0.0009501278,0.0003036857,0.00019138417,0.0005179229,0.000039337698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010166728,0.00019912272,0.0072291065,0.00010258547,0.00007844122,0.00020283439,0.0014095942,0.0000039513766,0.98398066,0.0041956855,0.000034025335,0.0015473528],"study_design_scores_gemma":[0.007206067,0.0029977302,0.3408882,0.00019424669,0.000043375934,0.0049445173,0.0006201191,0.0000045078136,0.6309279,0.0013005786,0.010351569,0.0005211467],"about_ca_topic_score_codex":0.00014499252,"about_ca_topic_score_gemma":0.000011431711,"teacher_disagreement_score":0.3530527,"about_ca_system_score_codex":0.000050125436,"about_ca_system_score_gemma":0.00006717041,"threshold_uncertainty_score":0.9999024},"labels":[],"label_agreement":null},{"id":"W1975578777","doi":"10.1007/s10753-010-9253-9","title":"Acute Lung Inflammation in Klebsiella pneumoniae B5055-Induced Pneumonia and Sepsis in BALB/c Mice: A Comparative Study","year":2010,"lang":"en","type":"article","venue":"Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Indian Council of Medical Research","keywords":"Pneumonia; Sepsis; Inflammation; Lung; Klebsiella pneumoniae; Medicine; Immunology; Klebsiella pneumonia; Immune system; Bacterial pneumonia; Fibrin; Microbiology; Biology; Bacteria; Pseudomonas aeruginosa; Internal medicine; Escherichia coli","score_opus":0.01178603430390341,"score_gpt":0.28110170422377684,"score_spread":0.26931566991987343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975578777","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963282,0.00009181987,0.000019001835,0.0006462571,0.0005068543,0.001437909,0.0000044222993,0.000082055085,0.0008835184],"genre_scores_gemma":[0.99922276,0.000032726064,0.00004137252,0.000015307807,0.000059814898,0.00020340494,0.00012133295,0.000020203932,0.00028307684],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99759644,0.0005366709,0.0009160296,0.00043459988,0.00010118831,0.00041505764],"domain_scores_gemma":[0.9989105,0.00025642765,0.00033299025,0.00034617822,0.00012469105,0.000029241814],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00094237056,0.0003169294,0.00047203817,0.00072424393,0.00016903467,0.00007921666,0.00020691796,0.00042011208,0.00010482621],"category_scores_gemma":[0.00013722829,0.0003206952,0.00005500195,0.00048569904,0.00008568529,0.0008133662,0.00009970832,0.0008002553,0.00025153076],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033732603,0.000091615126,0.03410825,0.000021109276,0.00008677443,0.000018674882,0.012914452,0.00004596667,0.9462178,0.00031311478,0.000029783123,0.0058151335],"study_design_scores_gemma":[0.0041276533,0.0002500373,0.5022405,0.00007832607,0.00006540837,0.000052924548,0.0024831204,0.0015059726,0.487591,0.00020983635,0.00095745316,0.0004378095],"about_ca_topic_score_codex":0.00026023606,"about_ca_topic_score_gemma":0.0034058806,"teacher_disagreement_score":0.4681322,"about_ca_system_score_codex":0.00011202653,"about_ca_system_score_gemma":0.00009095367,"threshold_uncertainty_score":0.99992454},"labels":[],"label_agreement":null},{"id":"W1975941905","doi":"10.1007/s001340051153","title":"Could anti-inflammatory actions of catecholamines explain the possible beneficial effects of supranormal oxygen delivery in critically ill surgical patients?","year":2000,"lang":"en","type":"review","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; St. Paul's Hospital","funders":"","keywords":"Medicine; Hypoxia (environmental); Norepinephrine; Epinephrine; Sepsis; Cytokine; Anesthesia; Oxygen delivery; Critically ill; Intensive care medicine; Animal studies; Pharmacology; Dopamine; Surgery; Internal medicine; Oxygen","score_opus":0.015651112942907473,"score_gpt":0.2869887068125013,"score_spread":0.27133759386959383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975941905","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15218377,0.84529614,0.0000022843,0.00014662022,0.0010575401,0.00096194766,0.00006169286,0.000019810057,0.00027021437],"genre_scores_gemma":[0.05350472,0.9449223,0.0000020119144,0.0002040733,0.00011569099,0.000087789536,0.0009831055,0.00003810393,0.00014218737],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970498,0.0007632832,0.0013587946,0.0003184017,0.00013628899,0.00037340017],"domain_scores_gemma":[0.9927965,0.0018320986,0.0004610654,0.00044301472,0.004441955,0.000025367357],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030217614,0.00042420812,0.0019649132,0.00054463,0.000103316546,0.000004269788,0.00038429655,0.00073960464,0.00016760505],"category_scores_gemma":[0.0029361877,0.00026483092,0.00037261005,0.00035546263,0.0007733442,0.00009531427,0.00009398691,0.000815079,0.00004539281],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013131363,0.00024256528,0.00047438176,0.025083294,0.0011240859,0.0002996806,0.0069184755,0.0000057061175,0.0058183614,0.00035258767,0.003968767,0.95439893],"study_design_scores_gemma":[0.0029932673,0.0010391168,0.0015430381,0.024364894,0.0012686201,0.0002013711,0.0043056607,5.8622487e-7,0.008555151,0.0000063863563,0.9553074,0.000414458],"about_ca_topic_score_codex":0.00025689945,"about_ca_topic_score_gemma":0.000032639182,"teacher_disagreement_score":0.9539845,"about_ca_system_score_codex":0.00010997077,"about_ca_system_score_gemma":0.00028927912,"threshold_uncertainty_score":0.9999804},"labels":[],"label_agreement":null},{"id":"W1975968504","doi":"10.1186/cc7098","title":"A quality assessment of genetic association studies supporting susceptibility and outcome in acute lung injury","year":2008,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Instituto de Salud Carlos III; Fundación Canaria de Investigación y Salud","keywords":"Medicine; Genetic association; Interquartile range; Genetic predisposition; Population; Bioinformatics; Gene; Internal medicine; Genetics; Genotype; Biology; Single-nucleotide polymorphism","score_opus":0.047714036186553566,"score_gpt":0.4191162092270961,"score_spread":0.3714021730405425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1975968504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99668574,0.0024448498,0.000055584194,0.00034748064,0.00015836899,0.00013358834,0.000019360356,0.000015670144,0.00013936813],"genre_scores_gemma":[0.9995501,0.00009434284,0.00017290119,0.00005522726,0.000007612955,0.000012904413,0.000024053712,0.000004177884,0.00007864834],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985746,0.00044785492,0.0005589516,0.00016383594,0.000049584458,0.00020514971],"domain_scores_gemma":[0.99883205,0.0006801087,0.00010033729,0.0001315346,0.00024541875,0.000010557045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059767906,0.000083227875,0.0003118707,0.00005646222,0.000099862926,0.0000037265559,0.00004750072,0.00014753788,0.00004116546],"category_scores_gemma":[0.0023150453,0.00007718104,0.00005210602,0.00006685177,0.00017570125,0.00007675067,0.00006750785,0.00018318524,0.000004404794],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049013164,0.000030311807,0.93605965,0.00019156477,0.00005146953,0.0000054198626,0.002093019,3.914083e-7,0.06019078,0.00043610542,0.00006146664,0.00083078136],"study_design_scores_gemma":[0.00039503752,0.00010345002,0.9834659,0.000018929879,0.000039211594,0.0000066695343,0.0030424087,0.000005576032,0.012675922,0.00011320423,0.000049163707,0.000084490726],"about_ca_topic_score_codex":0.00003794265,"about_ca_topic_score_gemma":0.000021251686,"teacher_disagreement_score":0.047514856,"about_ca_system_score_codex":0.00019838329,"about_ca_system_score_gemma":0.000060257116,"threshold_uncertainty_score":0.31473514},"labels":[],"label_agreement":null},{"id":"W1976111313","doi":"10.1164/rccm.201403-0586oc","title":"A Functional Synonymous Coding Variant in the <i>IL1RN</i> Gene Is Associated with Survival in Septic Shock","year":2014,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; University of Pennsylvania; National Institutes of Health; National Center for Advancing Translational Sciences; Pennsylvania Department of Health; National Center for Research Resources; American Heart Association","keywords":"Medicine; Septic shock; Gene; Coding (social sciences); Shock (circulatory); Intensive care medicine; Sepsis; Genetics; Internal medicine; Statistics; Biology","score_opus":0.013861188335023283,"score_gpt":0.253486321871757,"score_spread":0.23962513353673373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976111313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941306,0.0023344108,0.0005633723,0.0022879397,0.00019196316,0.000064655556,0.0000020976486,0.0000043828204,0.00042059468],"genre_scores_gemma":[0.9969407,0.000027735974,0.0000110543115,0.0029026151,0.00008989979,0.000003634493,0.0000047340377,0.0000072246366,0.000012426047],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980098,0.0010923174,0.00042598043,0.0001227771,0.00012733316,0.00022178689],"domain_scores_gemma":[0.9981238,0.0013939677,0.00015463357,0.00010631309,0.00019040534,0.00003083509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016718553,0.000120351775,0.0004030332,0.00017435063,0.00008883438,0.00000936643,0.000113235365,0.000068591464,0.00007758562],"category_scores_gemma":[0.001190505,0.000070272254,0.00003766696,0.00026995747,0.00071304245,0.00008261572,0.000014777488,0.00048289268,0.0000032851638],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.021263562,0.0013361624,0.1835159,0.00039780885,0.0011835521,0.006503503,0.06884471,0.00015373412,0.43487912,0.023502234,0.006531357,0.25188833],"study_design_scores_gemma":[0.03191468,0.06060963,0.68808603,0.0036263238,0.0011170814,0.010476647,0.14275135,0.0001175562,0.017036417,0.0009605774,0.041862626,0.0014410573],"about_ca_topic_score_codex":0.000030888976,"about_ca_topic_score_gemma":0.000029777279,"teacher_disagreement_score":0.5045701,"about_ca_system_score_codex":0.00004645283,"about_ca_system_score_gemma":0.00008707149,"threshold_uncertainty_score":0.28656194},"labels":[],"label_agreement":null},{"id":"W1976130340","doi":"10.1007/s00424-015-1697-1","title":"Activation of Toll-like receptor 3 increases mouse aortic vascular smooth muscle cell contractility through ERK1/2 pathway","year":2015,"lang":"en","type":"article","venue":"Pflügers Archiv - European Journal of Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"New York Institute of Technology","funders":"American Heart Association","keywords":"Vascular smooth muscle; Endocrinology; Contractility; Internal medicine; TLR3; Biology; Chemistry; Receptor; Medicine; Toll-like receptor; Innate immune system","score_opus":0.01721490167804202,"score_gpt":0.21985879480134435,"score_spread":0.20264389312330233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976130340","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962152,0.0007131907,0.0006211724,0.00010518618,0.0005337142,0.00016174506,0.00001555121,0.000023085526,0.0016111421],"genre_scores_gemma":[0.998754,0.00027502593,0.00038657794,0.00013571618,0.00011411858,0.0000017577238,0.000079930025,0.000031537533,0.0002213287],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99543,0.0029999176,0.00091885903,0.00022601173,0.000095812036,0.00032941072],"domain_scores_gemma":[0.99781615,0.00036289505,0.0010809377,0.00038163897,0.0002984956,0.000059883645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012341037,0.00022369625,0.00056063826,0.00015460736,0.000100226476,0.000010074294,0.00037303672,0.0000847986,0.00020473995],"category_scores_gemma":[0.00047254833,0.00018356614,0.0002792963,0.00011397562,0.00031802783,0.00038320414,0.00009861957,0.0004843369,0.00018338008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017705971,0.00039198512,0.000049021273,0.00003486888,0.00018562756,0.0000063431426,0.00201777,0.00011684976,0.98674,0.000043838958,0.0017577257,0.0068853623],"study_design_scores_gemma":[0.0038641999,0.0014480659,0.027205838,0.00007937585,0.00009207532,0.000022770073,0.001025143,0.000013112235,0.86854947,0.00025935363,0.097181514,0.00025906923],"about_ca_topic_score_codex":0.000072329836,"about_ca_topic_score_gemma":9.361676e-7,"teacher_disagreement_score":0.11819053,"about_ca_system_score_codex":0.00005174305,"about_ca_system_score_gemma":0.00020857675,"threshold_uncertainty_score":0.74856097},"labels":[],"label_agreement":null},{"id":"W1976268803","doi":"10.1080/10739680590960368","title":"Lipopolysaccharide: A p38 MAPK‐Dependent Disrupter of Neutrophil Chemotaxis","year":2005,"lang":"en","type":"article","venue":"Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chemotaxis; Chemokine; Lipopolysaccharide; p38 mitogen-activated protein kinases; In vivo; Neutrophil extracellular traps; Immunology; MAPK/ERK pathway; Sepsis; Biology; In vitro; Endogeny; Inflammation; Interleukin 8; Cell biology; Signal transduction; Receptor; Endocrinology; Biochemistry","score_opus":0.007645908018698644,"score_gpt":0.22110688474604875,"score_spread":0.21346097672735012,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976268803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958915,0.0014292939,0.0011146839,0.00050144957,0.00021097584,0.00018790275,0.000007038184,0.000050078917,0.0006070714],"genre_scores_gemma":[0.99824935,0.00003629018,0.00013546388,0.00012571257,0.000068699,0.000010249786,0.00013302243,0.000014377896,0.0012268116],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990739,0.00008406239,0.00039647843,0.00019329891,0.0000437513,0.00020847392],"domain_scores_gemma":[0.99942744,0.000035334255,0.00019047811,0.00025100703,0.00008469474,0.000011047594],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018966907,0.00013229836,0.00019425203,0.00012641685,0.00009510132,0.000010803728,0.00011906819,0.00019422016,0.000778713],"category_scores_gemma":[0.000025355966,0.00012814092,0.000106938074,0.000074250325,0.00006338206,0.00020892899,0.000039785093,0.0001360169,0.0008702962],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010736383,0.000058717676,0.00094017887,0.000015494576,0.000058353882,5.210086e-7,0.0005663661,0.00007165621,0.97057086,0.00046265585,0.00033452528,0.026813328],"study_design_scores_gemma":[0.0008307792,0.000039665043,0.02135813,0.000019791962,0.00003372835,0.000043023076,0.00006857692,0.000055853132,0.95826757,0.000064359476,0.019081874,0.00013662985],"about_ca_topic_score_codex":0.00007696296,"about_ca_topic_score_gemma":0.000011062126,"teacher_disagreement_score":0.026676698,"about_ca_system_score_codex":0.000072159324,"about_ca_system_score_gemma":0.00003226671,"threshold_uncertainty_score":0.9999076},"labels":[],"label_agreement":null},{"id":"W1976431071","doi":"10.1016/j.healun.2013.01.844","title":"Regulatory T Cells (Tregs) in Neonatal Tolerance: Allogeneic Tregs Regulate the Neonatal Immune System and Prolong Heart Graft Survival","year":2013,"lang":"en","type":"article","venue":"The Journal of Heart and Lung Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Medicine; Immune system; Immune tolerance; Immunology; Regulatory T cell; T cell; IL-2 receptor","score_opus":0.004143452103723766,"score_gpt":0.19909689371694944,"score_spread":0.19495344161322567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976431071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9776291,0.020229671,0.00009225955,0.0012598087,0.0003933349,0.00035646866,0.000004055977,0.000011481181,0.000023795104],"genre_scores_gemma":[0.9985159,0.0011667255,0.000026618723,0.000038920793,0.000046850048,0.0000075707485,0.0000145962995,0.0000110307265,0.0001717708],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99842596,0.0006659574,0.0005052273,0.00010476565,0.00008172588,0.00021635843],"domain_scores_gemma":[0.9993295,0.00025646374,0.00018173439,0.00014369826,0.00006914509,0.000019474615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012291776,0.0001457927,0.0002789624,0.00010760447,0.00025302163,0.0000313866,0.00011890937,0.00013067579,0.00002390046],"category_scores_gemma":[0.0000056473486,0.00008528715,0.00006783013,0.00008806188,0.00018082661,0.00032304443,0.000013411205,0.0003294582,0.000014331522],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019486392,0.000015800224,0.0025583408,0.00017569152,0.00011859275,0.000010789434,0.008263563,0.00016537601,0.98348063,0.00017573252,0.00020676474,0.002880103],"study_design_scores_gemma":[0.0043134843,0.00038875837,0.57616246,0.000602348,0.00029162227,0.006338037,0.004848751,0.00044512257,0.40399936,0.000079804035,0.00224782,0.0002824478],"about_ca_topic_score_codex":0.0001488752,"about_ca_topic_score_gemma":0.00003898546,"teacher_disagreement_score":0.57948124,"about_ca_system_score_codex":0.000024247955,"about_ca_system_score_gemma":0.000042018542,"threshold_uncertainty_score":0.3477909},"labels":[],"label_agreement":null},{"id":"W1976644844","doi":"10.1038/nri3565","title":"NOD proteins: regulators of inflammation in health and disease","year":2013,"lang":"en","type":"review","venue":"Nature reviews. Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":647,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"NOD1; Nod; NOD2; Peptidoglycan; Cell biology; Biology; Autophagy; Effector; Inflammation; Immune system; Innate immune system; Bacteria; Genetics; Immunology; Gene","score_opus":0.017302293984621325,"score_gpt":0.3071016856073126,"score_spread":0.2897993916226913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976644844","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00016779058,0.99412525,0.000007917778,0.00029396254,0.0005747617,0.004705523,0.00001704143,0.000040414365,0.000067362234],"genre_scores_gemma":[0.000039570194,0.9973,0.00009837864,0.00006372077,0.000044694298,0.00076177286,0.0008819214,0.000050493625,0.00075944007],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9933475,0.0030087044,0.0024786054,0.00057669246,0.000058597794,0.00052986114],"domain_scores_gemma":[0.9965025,0.0002538421,0.0022113863,0.0008692029,0.000102323356,0.00006070252],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0013070194,0.0006320671,0.0035988402,0.00082617626,0.00010013228,0.000014641818,0.00043878137,0.0020408058,0.0001782349],"category_scores_gemma":[0.0016497658,0.00047600755,0.00044776496,0.0005529606,0.00031733984,0.00021602474,0.0002054063,0.0020597544,0.000449391],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006537552,0.000043483476,0.00000497934,0.026444195,0.00019602939,0.0000023113644,0.000109467524,3.6355527e-8,0.0004097374,0.0025404165,0.0008003507,0.9693836],"study_design_scores_gemma":[0.00048965454,0.00015315208,0.000048996,0.025991099,0.000120743774,0.000074258234,0.000015979693,2.939516e-7,0.00010443467,0.00015651961,0.972503,0.000341887],"about_ca_topic_score_codex":0.000049809216,"about_ca_topic_score_gemma":0.000006325936,"teacher_disagreement_score":0.97170264,"about_ca_system_score_codex":0.00019622654,"about_ca_system_score_gemma":0.0009106305,"threshold_uncertainty_score":0.99976915},"labels":[],"label_agreement":null},{"id":"W1976914461","doi":"10.1038/cr.2011.84","title":"Coordinate activation of inflammatory gene networks, alveolar destruction and neonatal death in AKNA deficient mice","year":2011,"lang":"en","type":"article","venue":"Cell Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Université de Montréal; Montreal Clinical Research Institute","funders":"National Cancer Institute; National Institute of Allergy and Infectious Diseases; University of Texas MD Anderson Cancer Center; University of California, San Diego; National Institutes of Health","keywords":"Biology; Inflammation; Proinflammatory cytokine; Immunology; Transcription factor; Gene; Cell biology; Genetics","score_opus":0.04107374440593012,"score_gpt":0.2733896309257259,"score_spread":0.23231588651979576,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1976914461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99565107,0.0023843718,0.0004943226,0.000014206663,0.00010453649,0.00024460588,8.960479e-7,0.000012265423,0.0010937203],"genre_scores_gemma":[0.99898446,0.00041460514,0.00010154044,0.0000041685335,0.000011237399,0.000018230623,0.000035445773,0.000010016349,0.0004203257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987087,0.00046544278,0.00025837577,0.00019005063,0.000062971136,0.00031446287],"domain_scores_gemma":[0.9994162,0.00015868779,0.00007654788,0.00017360321,0.00015835607,0.000016633807],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011943011,0.00008611254,0.0001302842,0.0003494649,0.00012492554,0.000007888211,0.00012521824,0.00020201666,0.00009448649],"category_scores_gemma":[0.000076814096,0.00008381946,0.000026307385,0.00023518226,0.00018676411,0.00016802055,0.0001047188,0.00033630166,0.000036090703],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088205305,0.00006215935,0.014654034,0.000047397487,0.000019198163,0.0000052705554,0.0013679115,0.000049430066,0.96804893,0.00080481154,0.00009110047,0.013967694],"study_design_scores_gemma":[0.0006963652,0.00013923548,0.08000604,0.0000336217,0.0000043584123,0.000014978776,0.00035170765,0.00016783433,0.9169985,0.00017465436,0.0013354215,0.000077274635],"about_ca_topic_score_codex":0.00030449417,"about_ca_topic_score_gemma":0.000015169763,"teacher_disagreement_score":0.06535201,"about_ca_system_score_codex":0.000060093727,"about_ca_system_score_gemma":0.000074035706,"threshold_uncertainty_score":0.34180585},"labels":[],"label_agreement":null},{"id":"W1977093051","doi":"10.1073/pnas.1303738110","title":"<i>Neisseria gonorrhoeae-</i> derived heptose elicits an innate immune response and drives HIV-1 expression","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Child and Family Research Institute; University of British Columbia; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Neisseria gonorrhoeae; Heptose; Biology; Innate immune system; Microbiology; Lipid A; Bacterial outer membrane; Pathogen-associated molecular pattern; Gonorrhea; Escherichia coli; Mutant; Bacteria; Immune system; Gene; Virology; Biochemistry; Genetics; Human immunodeficiency virus (HIV)","score_opus":0.017137912808440427,"score_gpt":0.2659853138901835,"score_spread":0.24884740108174305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977093051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961801,0.0007295973,7.964578e-7,0.0022316156,0.000029645595,0.00023553429,0.000004484917,0.00001799765,0.000570221],"genre_scores_gemma":[0.99895936,0.00008555041,0.00032366492,0.00013592294,0.00001434091,0.000022423845,9.591408e-7,0.0000047175276,0.00045306512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906117,0.000065705055,0.00037961747,0.00021967766,0.00009431581,0.00017954437],"domain_scores_gemma":[0.9991091,0.00018224963,0.00041572604,0.0000149378675,0.0002611582,0.000016835971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012935413,0.000115495,0.00017616637,0.00018761324,0.00033657975,0.00003072913,0.0005312934,0.0001579255,0.00007426579],"category_scores_gemma":[0.00056887383,0.00007603032,0.000047897494,0.00030614034,0.00091103435,0.0010800406,0.0001790667,0.00017344819,0.000020858319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002714684,0.0000309692,0.0008951292,0.000016086864,0.000012207763,1.0325609e-9,0.0006440892,0.000004556709,0.9950797,0.002132161,0.00024939812,0.00066422357],"study_design_scores_gemma":[0.00028196123,0.00008154588,0.22918247,0.00007266252,0.0000054545417,0.000012293466,0.0004323362,0.000054936936,0.76673955,0.0026232747,0.00044161262,0.000071908464],"about_ca_topic_score_codex":0.000010229861,"about_ca_topic_score_gemma":2.1366338e-8,"teacher_disagreement_score":0.22834016,"about_ca_system_score_codex":0.00001504053,"about_ca_system_score_gemma":0.00003190864,"threshold_uncertainty_score":0.3356744},"labels":[],"label_agreement":null},{"id":"W1977356375","doi":"10.1186/cc8240","title":"The TLR4 antagonist CRX-526 reduces LPS-induced leukocyte activation and improves capillary perfusion of the rat intestine","year":2010,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Medicine; Antagonist; Perfusion; Pharmacology; TLR4; Anesthesia; Internal medicine; Receptor","score_opus":0.009721201230495318,"score_gpt":0.25963986864989064,"score_spread":0.2499186674193953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977356375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99439836,0.0012852581,0.000005428096,0.0026555841,0.0010036618,0.00016463952,0.0000023383946,0.000020711394,0.00046404186],"genre_scores_gemma":[0.999563,0.000046294183,0.000013431839,0.00007775505,0.000054973865,0.00001070452,0.00002162295,0.000008470019,0.000203796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992544,0.00017056761,0.00020813478,0.0001470755,0.000040691248,0.00017912523],"domain_scores_gemma":[0.9989159,0.0005253344,0.000055768884,0.00025622884,0.00023301215,0.000013736488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018506411,0.00010525399,0.00012137206,0.000026042146,0.00062068814,0.00003498854,0.00016485935,0.00018174338,0.000031650092],"category_scores_gemma":[0.0016028886,0.000059214635,0.000052667583,0.00006781461,0.00057779864,0.00010248934,0.000120238525,0.00039284278,0.000010887618],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019514826,0.000010850381,0.000116156196,0.000026753396,0.00000642939,3.8624665e-7,0.0006458153,3.558342e-8,0.979643,0.0020729618,0.00015434851,0.017128149],"study_design_scores_gemma":[0.00027337,0.00012427548,0.0089636985,0.000036868543,0.000022802264,0.00003356017,0.0025077248,0.000005372501,0.9827519,0.00014194431,0.0050613414,0.00007714958],"about_ca_topic_score_codex":0.00004407086,"about_ca_topic_score_gemma":0.000020698662,"teacher_disagreement_score":0.017051,"about_ca_system_score_codex":0.000016253429,"about_ca_system_score_gemma":0.0000872993,"threshold_uncertainty_score":0.4773894},"labels":[],"label_agreement":null},{"id":"W1977613415","doi":"10.1016/j.bbrc.2013.11.119","title":"Murine T cell activation is regulated by surfen (bis-2-methyl-4-amino-quinolyl-6-carbamide)","year":2013,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Dalhousie University","keywords":"IL-2 receptor; T cell; CD28; Molecular biology; Cell growth; Chemistry; In vivo; Glycosaminoglycan; Ionomycin; CD3; Interleukin 2; In vitro; Biochemistry; Biology; Cytotoxic T cell; Immunology; Antigen; Immune system; CD8","score_opus":0.036661330013237584,"score_gpt":0.3091847040723989,"score_spread":0.2725233740591613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977613415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98399323,0.0027022667,0.000021010832,0.010240146,0.00003093878,0.00053505483,0.000032374057,0.00007854794,0.0023664096],"genre_scores_gemma":[0.9891884,0.0012098288,0.00015861994,0.0001599597,0.000029986662,0.00016483806,0.0007709861,0.000019183213,0.008298225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979527,0.0006255418,0.00036896922,0.00036717218,0.00015710002,0.00052853976],"domain_scores_gemma":[0.9972625,0.00090088166,0.0000893871,0.0012010554,0.00046052257,0.000085645726],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043462147,0.00019681692,0.00024933903,0.00014829317,0.00056148926,0.000085356645,0.00078776083,0.00035334795,0.00041747442],"category_scores_gemma":[0.000295763,0.00016538867,0.000090026915,0.00051904324,0.0011138002,0.0002503282,0.00061680854,0.0008417488,0.001024964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006620302,0.00034140583,0.000031115003,0.00002204378,0.000042416807,1.0104211e-7,0.00013137658,2.230677e-8,0.92335534,0.00054468575,0.07115651,0.004308772],"study_design_scores_gemma":[0.00058394717,0.00014450376,0.0022327716,0.000036270398,0.000012231385,0.0000022003446,0.00014446586,0.00009081073,0.9326443,0.0005006941,0.0634197,0.00018807588],"about_ca_topic_score_codex":0.00079472456,"about_ca_topic_score_gemma":0.0000011665738,"teacher_disagreement_score":0.010080186,"about_ca_system_score_codex":0.000070336886,"about_ca_system_score_gemma":0.00008173857,"threshold_uncertainty_score":0.9997529},"labels":[],"label_agreement":null},{"id":"W1977921022","doi":"10.1016/j.jpeds.2003.10.034","title":"Primary Immunodeficiency to pneumococcal infection due to a defect in Toll-like receptor signaling","year":2004,"lang":"en","type":"article","venue":"The Journal of Pediatrics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Cytokine; Immunology; TLR4; Toll-like receptor; Medicine; Immune system; TLR2; Signal transduction; Receptor; Lipopolysaccharide; Interleukin 10; Streptococcus pneumoniae; Interleukin; Innate immune system; Tumor necrosis factor alpha; Biology; Cell biology; Microbiology; Internal medicine","score_opus":0.00765851758632945,"score_gpt":0.2275287935348472,"score_spread":0.21987027594851774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977921022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923795,0.0021104107,0.0033588402,0.0006833632,0.0011086047,0.00022542235,0.0000014776334,0.000013167527,0.00011920958],"genre_scores_gemma":[0.99889266,0.00037807462,0.00019815064,0.00026756639,0.00015176322,0.000003896159,0.000003752269,0.00001213388,0.000091999544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986646,0.00032546028,0.00057057105,0.000089218775,0.000082646984,0.000267499],"domain_scores_gemma":[0.9991868,0.00024242498,0.00024765902,0.00015644716,0.00014006632,0.000026572514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018272444,0.00012444971,0.00024800174,0.00048329408,0.0001409518,0.000017147346,0.00023697231,0.00013440182,0.000039490755],"category_scores_gemma":[0.0003405628,0.00008940786,0.00012115867,0.00060314714,0.000024883628,0.00016571408,0.00007205927,0.00045774883,0.00038218292],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010676461,0.00011859088,0.0010943984,0.000023251736,0.000014185038,0.000011278711,0.002764929,0.0069404505,0.9843806,0.00004657525,0.00040078565,0.00313733],"study_design_scores_gemma":[0.011006241,0.008888337,0.30894974,0.00046225352,0.00075671903,0.0046195127,0.0019652075,0.0000030740248,0.6242345,0.0012494567,0.036404777,0.0014601662],"about_ca_topic_score_codex":0.0000923532,"about_ca_topic_score_gemma":0.000014419508,"teacher_disagreement_score":0.36014608,"about_ca_system_score_codex":0.00026121948,"about_ca_system_score_gemma":0.00023964808,"threshold_uncertainty_score":0.4912316},"labels":[],"label_agreement":null},{"id":"W1977929504","doi":"10.1002/1521-4141(200209)32:9<2653::aid-immu2653>3.0.co;2-v","title":"Massive inflammatory syndrome and lymphocytic immunodeficiency in KARAP/DAP12-transgenic mice","year":2002,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Centre National de la Recherche Scientifique; Ligue Contre le Cancer; Institut National de la Santé et de la Recherche Médicale","keywords":"Biology; Transgene; Inflammation; Genetically modified mouse; Myeloid; Immunology; Cancer research; Cell biology; Gene; Genetics","score_opus":0.009157798836904119,"score_gpt":0.1866222956436218,"score_spread":0.17746449680671766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977929504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94569683,0.050676063,0.00010778267,0.00032995973,0.0009908599,0.00012243204,0.00000169107,0.000022706206,0.0020516764],"genre_scores_gemma":[0.99520785,0.0037749452,0.000059184786,0.000087591434,0.000025176932,0.0000018269986,0.0000039058605,0.000032761054,0.00080679066],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9965321,0.0016427733,0.0010989938,0.00021264286,0.0000580974,0.00045538193],"domain_scores_gemma":[0.9988062,0.00019633713,0.0005769891,0.00027573717,0.00012084127,0.000023929933],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011344482,0.00024743093,0.0004812095,0.0006322071,0.00014114403,0.00002348289,0.00045767266,0.00014718811,0.00053757103],"category_scores_gemma":[0.00018047281,0.00022280471,0.00014422587,0.00023185804,0.00040377147,0.00032786466,0.000099888166,0.0006706511,0.000901084],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071231124,0.0001418824,0.00075308414,0.000030244395,0.00040452724,0.00091179565,0.0036293068,0.000052051742,0.97421956,0.0005142488,0.00034773588,0.018283268],"study_design_scores_gemma":[0.040716346,0.008889565,0.61960924,0.0014428267,0.00045422252,0.07561234,0.0056686327,0.00013487753,0.14570315,0.0004491025,0.09908558,0.0022341497],"about_ca_topic_score_codex":0.00000896611,"about_ca_topic_score_gemma":0.0000012966409,"teacher_disagreement_score":0.82851636,"about_ca_system_score_codex":0.00016067842,"about_ca_system_score_gemma":0.00008214298,"threshold_uncertainty_score":0.99987686},"labels":[],"label_agreement":null},{"id":"W1977957999","doi":"10.4161/onci.20696","title":"Trial Watch","year":2012,"lang":"en","type":"article","venue":"OncoImmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":192,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research; Institut National Du Cancer; American Society of Clinical Oncology","keywords":"Innate immune system; Immune system; TLR2; Toll-like receptor; Pattern recognition receptor; TLR4; Immunology; Biology; Acquired immune system; TLR7; TLR3; Medicine; Cancer research","score_opus":0.016659581501656043,"score_gpt":0.25980436783370914,"score_spread":0.2431447863320531,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1977957999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9688093,0.0072712675,0.000100993944,0.00090011786,0.0047887685,0.00028686022,0.0000017394051,0.00014685474,0.017694103],"genre_scores_gemma":[0.9850359,0.0001317831,0.000050826595,0.00016262999,0.00015769848,0.00006023527,0.00008477236,0.00001632016,0.014299812],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985914,0.00035104196,0.00030736384,0.00014121884,0.000023440263,0.00058552664],"domain_scores_gemma":[0.99934435,0.00014938726,0.00010602725,0.00034761892,0.00003810223,0.0000145402755],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00046012923,0.00014699336,0.0002540487,0.00007916349,0.00016320038,0.000006968587,0.00019883507,0.00038130314,0.0025628188],"category_scores_gemma":[0.00013381579,0.00012745324,0.00009956503,0.00011114306,0.00016978136,0.00023319115,0.000085439424,0.00029900655,0.011182051],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.024080902,0.0004273512,0.0011792104,0.000005892608,0.00027567687,0.0000020622613,0.0013601638,3.1782886e-7,0.90397817,0.013034016,0.015377298,0.04027891],"study_design_scores_gemma":[0.02255705,0.00042291067,0.005267748,0.000005691449,0.000029858873,0.0001271461,0.0002082935,1.9836662e-7,0.18113546,0.000103160644,0.7899635,0.00017899385],"about_ca_topic_score_codex":0.00004728949,"about_ca_topic_score_gemma":0.0000016388483,"teacher_disagreement_score":0.7745862,"about_ca_system_score_codex":0.000054051307,"about_ca_system_score_gemma":0.000048409336,"threshold_uncertainty_score":0.99834895},"labels":[],"label_agreement":null},{"id":"W1978077712","doi":"10.1089/oli.2006.16.58","title":"Stimulation of Innate Immune Responses by CpG Oligodeoxynucleotide in Newborn Lambs Can Reduce Bovine Herpesvirus-1 Shedding","year":2006,"lang":"en","type":"article","venue":"Oligonucleotides","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Canadian Food Inspection Agency","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Biology; Innate immune system; Stimulation; Immune system; Virology; Bovine herpesvirus 1; Immunology; Virus; Neuroscience; Herpesviridae; Viral disease","score_opus":0.007696114327948301,"score_gpt":0.23581003842862183,"score_spread":0.22811392410067352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978077712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99182814,0.0030379642,0.00008112701,0.00056462723,0.00029761612,0.00035168152,0.00006105705,0.000119112476,0.0036586889],"genre_scores_gemma":[0.9945558,0.00014976205,0.00035856673,0.00006684065,0.00004408781,0.00003135587,0.00027506994,0.00005161857,0.004466932],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973301,0.0005270447,0.0010804596,0.0004004152,0.0000937538,0.00056821224],"domain_scores_gemma":[0.99859643,0.000353186,0.00042297703,0.00047220822,0.00013210975,0.000023116307],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007714192,0.00032892844,0.0005623082,0.00049033057,0.00017914211,0.00003376271,0.00031598975,0.0002937385,0.00032811848],"category_scores_gemma":[0.00029146048,0.0003338469,0.00014325297,0.0004887599,0.00026045035,0.00034141607,0.00011043103,0.000301362,0.00015793378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002118328,0.00016070346,0.0046028444,0.00003566548,0.00006042162,0.000008940459,0.00029496083,0.00027232827,0.9789974,0.0019034779,0.0025358573,0.009009071],"study_design_scores_gemma":[0.001758842,0.00025295062,0.08426717,0.00016151223,0.000037206908,0.000024133431,0.00018344926,0.00009745238,0.88321334,0.0004236387,0.029238628,0.0003416482],"about_ca_topic_score_codex":0.003864392,"about_ca_topic_score_gemma":0.00035668473,"teacher_disagreement_score":0.09578404,"about_ca_system_score_codex":0.00012825978,"about_ca_system_score_gemma":0.00010866073,"threshold_uncertainty_score":0.99991137},"labels":[],"label_agreement":null},{"id":"W1978609533","doi":"10.1089/jir.2012.0004","title":"Treatment with Ligands for Toll-Like Receptors 2 and 5 Induces a Mixed T-helper 1- and 2-Like Response in Chicken Splenocytes","year":2012,"lang":"en","type":"article","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"TLR5; Flagellin; TLR2; Cytokine; Biology; Immune system; Toll-like receptor; Receptor; Cell biology; Downregulation and upregulation; Splenocyte; Acquired immune system; Immunology; Chemistry; Innate immune system; Gene; Genetics","score_opus":0.046346554493190965,"score_gpt":0.3314518555483095,"score_spread":0.28510530105511855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978609533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99099636,0.007043423,0.000021497191,0.0012102504,0.00033546644,0.00033841006,0.0000042596644,0.00000619738,0.000044124772],"genre_scores_gemma":[0.99695295,0.0014100475,0.000096711025,0.000015770142,0.00008818965,0.00003562406,0.000008102922,0.000020382216,0.0013722229],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982147,0.0005397132,0.0004705727,0.00016248674,0.00010499691,0.0005075235],"domain_scores_gemma":[0.99829245,0.0010681122,0.0001712486,0.00015122179,0.00024998092,0.00006696065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002965311,0.00017819603,0.00039847824,0.0007427737,0.0001509038,0.000044493194,0.00013809455,0.00019438549,0.000059230082],"category_scores_gemma":[0.0002683919,0.00011475126,0.000060161223,0.00017945514,0.00024279823,0.00038060825,0.00007961028,0.0004613629,0.000011846811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06781605,0.00026022326,0.006871016,0.000035233214,0.00025725397,0.000011107938,0.0041249385,8.630749e-7,0.90735,0.00004071428,0.0010829129,0.012149677],"study_design_scores_gemma":[0.007411528,0.021407465,0.036669508,0.000371867,0.000052367566,0.0013481965,0.0041723447,0.000006554856,0.8696625,0.000027542199,0.05865521,0.00021490236],"about_ca_topic_score_codex":0.00004569752,"about_ca_topic_score_gemma":0.00004966235,"teacher_disagreement_score":0.06040452,"about_ca_system_score_codex":0.00019629917,"about_ca_system_score_gemma":0.00016659453,"threshold_uncertainty_score":0.46794206},"labels":[],"label_agreement":null},{"id":"W1978637210","doi":"10.1096/fj.04-3569fje","title":"Early life immune challenge alters innate immune responses to lipopolysaccharide: implications for host defense as adults","year":2005,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Immune system; Innate immune system; Immunology; Lipopolysaccharide; Tumor necrosis factor alpha; Corticosterone; Proinflammatory cytokine; Cytokine; Biology; Innate lymphoid cell; Glucocorticoid; Medicine; Internal medicine; Endocrinology; Inflammation; Hormone","score_opus":0.01849450788520213,"score_gpt":0.26887978624726405,"score_spread":0.2503852783620619,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978637210","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95703745,0.007602645,0.0006151001,0.033137314,0.0005649638,0.0006698865,0.000043652766,0.00006789235,0.00026109553],"genre_scores_gemma":[0.99467695,0.0009546694,0.0001606084,0.0009159801,0.00028221292,0.000122068595,0.000030560048,0.000039894603,0.0028170757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978306,0.00046905896,0.00078381243,0.00024233785,0.00006634213,0.00060782995],"domain_scores_gemma":[0.9981051,0.0005379902,0.00038611013,0.0005865255,0.00029626026,0.00008798059],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001353333,0.00026049317,0.00033385513,0.00029702293,0.0011379009,0.00009508701,0.0006473302,0.00020051727,0.00028003662],"category_scores_gemma":[0.00082524895,0.00019314216,0.00028522935,0.00016326802,0.00014389788,0.0003128229,0.000119721306,0.0005726155,0.0015243113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058861356,0.00009543957,0.0000880725,0.00000657216,0.00026547772,0.0000021190872,0.0033578607,0.000017290982,0.97054213,0.0021625042,0.001019485,0.016556924],"study_design_scores_gemma":[0.004070105,0.0013716092,0.04412745,0.00016527406,0.00015402031,0.00092554704,0.0012994456,0.000011556543,0.9054273,0.0005018036,0.04146421,0.00048170713],"about_ca_topic_score_codex":0.00009878615,"about_ca_topic_score_gemma":0.00001365058,"teacher_disagreement_score":0.06511485,"about_ca_system_score_codex":0.000101561214,"about_ca_system_score_gemma":0.0002450119,"threshold_uncertainty_score":0.9992531},"labels":[],"label_agreement":null},{"id":"W1978843262","doi":"10.1074/jbc.m110.189126","title":"Delineation of the Role of Toll-like Receptor Signaling during Peritonitis by a Gradually Growing Pathogenic Escherichia coli","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TLR4; TRIF; Peritonitis; TLR2; Peritoneal cavity; Escherichia coli; Cytokine; Biology; Tumor necrosis factor alpha; Sepsis; Immunology; Receptor; Microbiology; Toll-like receptor; Innate immune system; Inflammation; Medicine; Internal medicine; Immune system; Biochemistry; Gene","score_opus":0.011633473562364717,"score_gpt":0.19732992352240375,"score_spread":0.18569644996003903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978843262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963898,0.0032045068,0.000042406864,0.00003081967,0.0001277507,0.000052606825,0.000012570618,0.00000610758,0.00013340334],"genre_scores_gemma":[0.999364,0.00019991641,0.00022588068,0.000015462647,0.000036021793,0.0000021641645,0.000013158869,0.0000055656124,0.00013779092],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989068,0.00015665778,0.000650077,0.000091089445,0.00005068699,0.00014472526],"domain_scores_gemma":[0.9989301,0.000067627385,0.00069295807,0.00011359238,0.00017978909,0.000015940257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003304542,0.00010732737,0.00027415273,0.00002001287,0.000076123375,0.0000034120465,0.00024555787,0.00026215785,0.00035377892],"category_scores_gemma":[0.00020124299,0.000068170964,0.0002176392,0.00008672522,0.00014176125,0.00008146522,0.00005766709,0.00028374908,0.0000028846925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053062174,0.000083598236,0.0025223852,0.000023676994,0.000093768445,0.0000012494281,0.00022972786,0.0000022665954,0.99559546,0.000006361835,0.000029473887,0.0008813923],"study_design_scores_gemma":[0.00047717444,0.00013877502,0.0029907129,0.00008828546,0.00003171613,0.000082274586,0.0006626852,0.0000019745876,0.9945396,0.00003949295,0.00087092887,0.000076364944],"about_ca_topic_score_codex":0.0000070570104,"about_ca_topic_score_gemma":8.6103995e-8,"teacher_disagreement_score":0.0030045905,"about_ca_system_score_codex":0.00002721155,"about_ca_system_score_gemma":0.00005604922,"threshold_uncertainty_score":0.3873631},"labels":[],"label_agreement":null},{"id":"W1978971529","doi":"10.1007/s00134-004-2429-8","title":"Immune monitoring of patients with septic shock by measurement of intraleukocyte cytokines","year":2004,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Hospital","funders":"","keywords":"Septic shock; Cytokine; Medicine; Immunology; Lipopolysaccharide; Immune system; Sepsis; Tumor necrosis factor alpha; Intracellular; Monocyte; Whole blood; Biology; Cell biology","score_opus":0.01029631250350907,"score_gpt":0.22578270402737946,"score_spread":0.2154863915238704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1978971529","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98782474,0.010754824,0.0001856993,0.00031491267,0.00054599723,0.0002473893,0.000011572982,0.000016964937,0.00009792648],"genre_scores_gemma":[0.999601,0.000097870085,0.000023806655,0.00005473116,0.000024841527,0.000009151616,0.00012983738,0.000013132293,0.000045629313],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905217,0.00005767578,0.00044103226,0.00014235787,0.00012840783,0.00017836188],"domain_scores_gemma":[0.9946961,0.000042610216,0.00025888553,0.00022118448,0.004767493,0.00001375586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012380084,0.00015272404,0.00041363083,0.000117196425,0.000039005707,0.0000010697744,0.00012082453,0.00009770332,0.00004842112],"category_scores_gemma":[0.00057149684,0.00010401319,0.000049809114,0.00012233853,0.00031366263,0.000056280587,0.00002951424,0.00014278086,0.000011641759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010552686,0.000034040502,0.014988344,0.000097025455,0.0002474922,0.0000023685725,0.004155672,0.000015666152,0.9765667,0.000019524989,0.00044734878,0.0023705717],"study_design_scores_gemma":[0.0041420204,0.0014407643,0.07397824,0.0010114647,0.00010918762,0.000005472206,0.009328177,7.074019e-8,0.9089438,0.0000081118405,0.0009341392,0.00009856774],"about_ca_topic_score_codex":0.00024794947,"about_ca_topic_score_gemma":0.0000045563397,"teacher_disagreement_score":0.06762289,"about_ca_system_score_codex":0.00012932932,"about_ca_system_score_gemma":0.00006750513,"threshold_uncertainty_score":0.42415348},"labels":[],"label_agreement":null},{"id":"W1979167640","doi":"10.1007/s11908-012-0273-5","title":"Toll-Like Receptors and Opportunities for New Sepsis Therapeutics","year":2012,"lang":"en","type":"article","venue":"Current Infectious Disease Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Sepsis; TLR9; Innate immune system; Receptor; Medicine; Immunology; Toll-like receptor; Toll; Immune system; Intensive care medicine; Bioinformatics; Biology; Internal medicine; Gene","score_opus":0.05700240280789874,"score_gpt":0.29662291233418536,"score_spread":0.2396205095262866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979167640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9125737,0.07073332,0.0006429188,0.0005848304,0.013661131,0.0007016512,0.000010830644,0.00023159121,0.0008599983],"genre_scores_gemma":[0.9885386,0.00393665,0.0000071295713,0.00020465345,0.0002357889,0.000100931305,0.00023594846,0.000025554747,0.0067147124],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989531,0.00010605775,0.00033833974,0.00018501969,0.00004261609,0.00037486566],"domain_scores_gemma":[0.99920577,0.00011939794,0.00023867436,0.00024574823,0.000078076286,0.00011232488],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032950542,0.00017850107,0.00019469763,0.0001122118,0.00021400483,0.00002839778,0.00003507726,0.00011486997,0.00020418847],"category_scores_gemma":[0.00010276415,0.00016176094,0.00012441032,0.000048118312,0.00005779417,0.00025170908,0.000031753218,0.00012221524,0.000034647113],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054470985,0.00072920515,0.25159943,0.0003450837,0.00088472886,0.000020840276,0.0012876501,0.000004553375,0.007754728,0.0015342067,0.17416276,0.5611321],"study_design_scores_gemma":[0.00041302867,0.000054646087,0.007264143,0.00004294599,0.0002668668,0.00014224267,0.000068506284,0.0000015510104,0.0030732837,0.0003618911,0.9880914,0.00021947085],"about_ca_topic_score_codex":0.000009366506,"about_ca_topic_score_gemma":0.000001125446,"teacher_disagreement_score":0.81392866,"about_ca_system_score_codex":0.00007207967,"about_ca_system_score_gemma":0.00018071235,"threshold_uncertainty_score":0.659642},"labels":[],"label_agreement":null},{"id":"W1979322793","doi":"10.1074/jbc.m608089200","title":"Nucleic Acids Exert a Sequence-independent Cooperative Effect on Sequence-dependent Activation of Toll-like Receptor 9","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Saskatchewan","funders":"Krembil Foundation","keywords":"Nucleic acid; Sequence (biology); Toll; Toll-like receptor; Receptor; Computational biology; Chemistry; Toll-Like Receptor 9; Biology; Biochemistry; Genetics; Innate immune system; Gene","score_opus":0.02469121261727462,"score_gpt":0.27877794307931875,"score_spread":0.2540867304620441,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979322793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978179,0.00028207645,0.00019762533,0.00012989697,0.0003442472,0.00014988882,0.000009447822,0.000019137819,0.0010497982],"genre_scores_gemma":[0.9989953,0.0001337461,0.000060846065,0.0000840971,0.00010304417,0.000003862635,0.000046342317,0.0000089797095,0.0005637938],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833775,0.0002463914,0.00078862294,0.00020462617,0.00012823411,0.00029439534],"domain_scores_gemma":[0.9983153,0.00049377175,0.00069911947,0.00018202096,0.00026515985,0.000044629756],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014216638,0.00022042055,0.0004850599,0.00007966137,0.00010060672,0.000012080075,0.00029048405,0.0005821275,0.00084697665],"category_scores_gemma":[0.0005742612,0.00014330268,0.00020946359,0.00013314847,0.00021209726,0.00012737821,0.00005151232,0.0006805524,0.000069215515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040038256,0.00014497814,0.00076122256,0.0000267362,0.00014601834,0.000026483842,0.00012501667,0.00001627695,0.9890141,0.000025237227,0.00022524943,0.0054848464],"study_design_scores_gemma":[0.0013457186,0.001874441,0.0012798244,0.00016324739,0.00002263175,0.00029005168,0.00026621632,0.000001337942,0.9919941,0.000027930833,0.0025807442,0.00015379435],"about_ca_topic_score_codex":0.0000047982944,"about_ca_topic_score_gemma":2.6192907e-7,"teacher_disagreement_score":0.005331052,"about_ca_system_score_codex":0.0002243743,"about_ca_system_score_gemma":0.000109957924,"threshold_uncertainty_score":0.92738},"labels":[],"label_agreement":null},{"id":"W1979582699","doi":"10.1371/journal.ppat.1000829","title":"An Accessory to the ‘Trinity’: SR-As Are Essential Pathogen Sensors of Extracellular dsRNA, Mediating Entry and Leading to Subsequent Type I IFN Responses","year":2010,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":139,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; U.S. Public Health Service; National Institutes of Health; McMaster University","keywords":"TLR3; Extracellular; RNA silencing; Biology; Cell biology; Receptor; Interferon; Innate immune system; Signal transduction; RNA interference; RNA; Toll-like receptor; Biochemistry; Immunology; Gene","score_opus":0.01812008334833694,"score_gpt":0.2699554674596676,"score_spread":0.25183538411133066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979582699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99717706,0.0007269488,0.000028242792,0.0007230094,0.000627635,0.00047057713,0.00008712945,0.000054405733,0.00010500116],"genre_scores_gemma":[0.99849516,0.0000925647,0.00025608097,0.00012595569,0.00014063384,0.000029280673,0.00007163165,0.000029097799,0.00075958855],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981276,0.0005951373,0.0004319055,0.00035100587,0.00010282212,0.00039155103],"domain_scores_gemma":[0.99842846,0.00039328812,0.00022176729,0.0006806775,0.00020152764,0.000074261465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086495094,0.00020986475,0.00031112536,0.00021394409,0.00031312765,0.000039326533,0.00040661526,0.0002567141,0.00022201474],"category_scores_gemma":[0.0018764358,0.00016859565,0.00006814913,0.0002492249,0.00011058618,0.00013784863,0.00018860407,0.0003914405,0.00039906875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007916164,0.00009071109,0.0044328254,0.000024530624,0.00007608929,0.000030979536,0.0037214675,0.000021582435,0.9880022,0.00014996037,0.00011189734,0.0025461838],"study_design_scores_gemma":[0.0003519531,0.00025546196,0.019281294,0.00004793117,0.00008556942,0.00006669393,0.0014212097,0.000015410043,0.97326446,0.00003098688,0.00495724,0.00022180536],"about_ca_topic_score_codex":0.000031340667,"about_ca_topic_score_gemma":0.000068718815,"teacher_disagreement_score":0.014848469,"about_ca_system_score_codex":0.000020198986,"about_ca_system_score_gemma":0.00009826738,"threshold_uncertainty_score":0.6875131},"labels":[],"label_agreement":null},{"id":"W1979778191","doi":"10.1007/pl00000278","title":"A comparative study of the antipyretic effects of indomethacin and dipyrone in rats","year":2002,"lang":"en","type":"article","venue":"Inflammation Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Fleurimont; Université de Sherbrooke","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Antipyretic; Vasopressin; Indometacin; Cyclooxygenase; Chemistry; Antagonist; Endocrinology; Internal medicine; Pharmacology; Receptor; Medicine; Analgesic; Biochemistry; Enzyme","score_opus":0.05419166348049836,"score_gpt":0.33919811728212107,"score_spread":0.2850064538016227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1979778191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974097,0.0009227579,0.0000035655273,0.00012975438,0.000057406447,0.0010296797,6.390033e-7,0.000005313362,0.00044115895],"genre_scores_gemma":[0.9993335,0.00006625055,0.000004114741,0.0000015645162,0.000005119697,0.000052354524,0.000002004904,0.000003887879,0.0005311872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973641,0.0018305776,0.00038215492,0.00012524876,0.00012246339,0.0001754601],"domain_scores_gemma":[0.99841726,0.0010266609,0.00012895225,0.00024271873,0.0001770811,0.0000073131687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010553699,0.000073331474,0.00024592076,0.0003720168,0.00009501669,0.0000072722787,0.00016159113,0.000094561474,0.00007663807],"category_scores_gemma":[0.0005014244,0.000052400115,0.000023539693,0.0005542491,0.00030487118,0.00010405562,0.00011707309,0.00031517018,0.000037449227],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018439115,0.00021702622,0.008305253,0.00009233922,0.000046537643,0.000001316867,0.016175838,0.000016731567,0.97204685,0.00027521016,0.000078192184,0.0025603403],"study_design_scores_gemma":[0.001958642,0.00042752732,0.12740903,0.000083447274,0.0000061645487,0.0000021187193,0.0020046916,0.00007645576,0.86781806,0.00006505513,0.00010439368,0.00004439097],"about_ca_topic_score_codex":0.00011159869,"about_ca_topic_score_gemma":0.00006145846,"teacher_disagreement_score":0.119103774,"about_ca_system_score_codex":0.000022378024,"about_ca_system_score_gemma":0.000020475249,"threshold_uncertainty_score":0.21368147},"labels":[],"label_agreement":null},{"id":"W1980603020","doi":"10.1067/msy.2000.103497","title":"Polymorphonuclear neutrophil (PMN) recruitment in a 2-front murine injury model: Triage of PMNs to competing stimuli of recruitment","year":2000,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"Medicine; Hemocytometer; Peritonitis; Laparotomy; Abdomen; Sepsis; Surgery; Anesthesia; Pathology","score_opus":0.07427690008283167,"score_gpt":0.3013281894519639,"score_spread":0.22705128936913221,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1980603020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967409,0.00093004666,0.000023199556,0.0003946817,0.00023023925,0.0008085836,0.000031822583,0.000031358362,0.00080920535],"genre_scores_gemma":[0.9972866,0.00041634912,0.00019988585,0.00012564698,0.000017055077,0.00011105452,0.00006876754,0.000022991626,0.0017516228],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804646,0.00039314342,0.0009065093,0.00024281628,0.00006422474,0.00034682357],"domain_scores_gemma":[0.999024,0.0003136823,0.00021434328,0.00037221386,0.00004952646,0.000026265634],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00088150473,0.00017940467,0.0006052031,0.00037189128,0.000049862734,0.0000042433294,0.00013919554,0.00015410432,0.0016029102],"category_scores_gemma":[0.00010142946,0.00017228103,0.00017200365,0.00017834519,0.00007390449,0.00008685802,0.00006405246,0.00016984179,0.00024148492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007298598,0.0005352005,0.001451543,0.00007507009,0.00014445762,0.000014100292,0.0023899076,0.0025448964,0.8503512,0.00010565773,0.0026424732,0.13244687],"study_design_scores_gemma":[0.002255243,0.00069971464,0.017848475,0.00064147706,0.00005747535,0.000020298206,0.00034741522,0.00046430112,0.92242366,0.0000938247,0.05465934,0.00048879767],"about_ca_topic_score_codex":0.00033144077,"about_ca_topic_score_gemma":0.00001928826,"teacher_disagreement_score":0.13195807,"about_ca_system_score_codex":0.00008714015,"about_ca_system_score_gemma":0.00011861616,"threshold_uncertainty_score":0.9993098},"labels":[],"label_agreement":null},{"id":"W1981304364","doi":"10.1016/j.vaccine.2014.01.082","title":"The effects of administration of ligands for Toll-like receptor 4 and 21 against Marek's disease in chickens","year":2014,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre; University of Calgary; University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Natural Sciences and Engineering Research Council of Canada; University of Guelph","keywords":"Marek's disease; TLR9; CpG Oligodeoxynucleotide; TLR3; Biology; TLR4; Toll-like receptor; Virology; Innate immune system; Immune system; Virus; Immunology; CpG site; TLR7; Lipopolysaccharide; Immunity; Receptor; Gene; Gene expression; Genetics","score_opus":0.00296998786022053,"score_gpt":0.21072036640065142,"score_spread":0.20775037854043088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981304364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732107,0.0016362567,0.00005108432,0.00043285562,0.00024022047,0.00027893056,0.000005476682,0.00000592785,0.000028205794],"genre_scores_gemma":[0.99903023,0.0003825362,0.000011409812,0.000026728416,0.000015376967,0.000026696898,0.00007795663,0.000004804789,0.0004242676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99954295,0.000057696223,0.00021211682,0.00007966106,0.000013007722,0.0000945568],"domain_scores_gemma":[0.9992518,0.00046511268,0.000104063845,0.0001340452,0.00003638177,0.000008633907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024547923,0.00006113458,0.00013538166,0.00004655275,0.00005240657,0.0000032814057,0.00005489068,0.00006310532,0.00000568112],"category_scores_gemma":[0.00041263504,0.000042537453,0.000031804677,0.000046990615,0.000016980974,0.00003660501,0.00001673722,0.000045427896,0.000003219272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032205207,0.000057416444,0.0051080775,0.00019125821,0.00003624203,2.8217877e-7,0.00017157191,0.0000011672391,0.9738635,0.00083257136,0.0009046468,0.015612759],"study_design_scores_gemma":[0.0026544177,0.0006950036,0.13052315,0.000119324744,0.000027479717,0.0000013588846,0.00003664475,0.00005614416,0.85048103,0.00015844297,0.015174608,0.0000724221],"about_ca_topic_score_codex":0.000005144638,"about_ca_topic_score_gemma":0.000019057094,"teacher_disagreement_score":0.12541506,"about_ca_system_score_codex":0.0000053160766,"about_ca_system_score_gemma":0.000027491518,"threshold_uncertainty_score":0.1734627},"labels":[],"label_agreement":null},{"id":"W1981412223","doi":"10.1152/ajpregu.00756.2002","title":"Interleukin-10 and nerve growth factor have reciprocal upregulatory effects on intestinal epithelial cells","year":2003,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cholera toxin; Downregulation and upregulation; Epithelium; Nerve growth factor; Intestinal epithelium; Biology; Cytokine; Flow cytometry; Intestinal mucosa; Cell biology; Cell culture; Endocrinology; Internal medicine; Molecular biology; Immunology; Medicine; Receptor; Biochemistry","score_opus":0.012970216230882693,"score_gpt":0.2506819981756975,"score_spread":0.2377117819448148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981412223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741006,0.000985696,0.00021799734,0.00008820666,0.00061056676,0.00028732046,0.000016927017,0.000025161524,0.00035806166],"genre_scores_gemma":[0.99878687,0.0000908627,0.00026246568,0.0002898393,0.00014209743,0.000026458649,0.00001901858,0.000025472282,0.00035694],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99521637,0.0027013142,0.00083455176,0.00060290605,0.00009694888,0.00054793456],"domain_scores_gemma":[0.99635774,0.0015302037,0.0011507188,0.00030953513,0.00053885096,0.00011292663],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0003617117,0.0006453438,0.0016152675,0.00035336797,0.00027975056,0.00002240243,0.00031216588,0.00023700496,0.00021573383],"category_scores_gemma":[0.0002277007,0.00045243202,0.0002813778,0.00019273389,0.0028256366,0.00026041592,0.00009283265,0.0009997588,0.00008586877],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003652448,0.00019402933,0.00025879458,0.000027171523,0.0006239658,0.000005471563,0.0023744553,0.000014580052,0.9812731,0.007874354,0.00090237905,0.0027992267],"study_design_scores_gemma":[0.0019555655,0.009237015,0.08591316,0.00017876831,0.0000908588,0.00019099722,0.0029519002,0.000017574996,0.89387167,0.0028643776,0.0022897,0.00043842912],"about_ca_topic_score_codex":0.00003133014,"about_ca_topic_score_gemma":0.000005770381,"teacher_disagreement_score":0.08740147,"about_ca_system_score_codex":0.000103289785,"about_ca_system_score_gemma":0.00017332766,"threshold_uncertainty_score":0.9998881},"labels":[],"label_agreement":null},{"id":"W1981498390","doi":"10.1371/journal.pone.0004127","title":"Toll-Like Receptor 3 Signaling on Macrophages Is Required for Survival Following Coxsackievirus B4 Infection","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Michael Smith Health Research BC","keywords":"TLR3; Coxsackievirus; Biology; Innate immune system; Viral replication; Toll-like receptor; TLR7; Signal transduction; Immune system; Acquired immune system; Immunology; miR-155; Cell biology; Virology; Virus; Enterovirus; microRNA; Gene; Genetics","score_opus":0.04439063003925943,"score_gpt":0.2600682467159395,"score_spread":0.21567761667668006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981498390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99627703,0.00069983344,0.0002709522,0.00067215075,0.00076159433,0.0005057986,0.000015075107,0.00014491323,0.0006526339],"genre_scores_gemma":[0.9942344,0.00015596455,0.000287384,0.0005231984,0.0001250713,0.000032536896,0.00017424503,0.000021241458,0.0044459766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998838,0.00018026956,0.00032221846,0.00026312363,0.00006940511,0.0003269492],"domain_scores_gemma":[0.9993311,0.00021471492,0.00012717943,0.00022950971,0.00008050609,0.000016959066],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00039715364,0.00017653509,0.00032978994,0.00012479244,0.0003005449,0.000029153378,0.00010142875,0.00024814394,0.0003055486],"category_scores_gemma":[0.00018955664,0.00017396937,0.00017181253,0.00011674006,0.000027876174,0.00018022039,0.000015674106,0.00017713608,0.0008018301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010027464,0.00043144907,0.00015716035,0.000026072556,0.00038762775,0.000001533631,0.0002692544,0.000003390935,0.99168247,0.0001729665,0.0011834629,0.0046818946],"study_design_scores_gemma":[0.0014823668,0.000901384,0.00067520177,0.00019387895,0.00013882844,0.0000011409816,0.00003263285,0.000014437207,0.9885921,0.00014436193,0.007617965,0.00020570896],"about_ca_topic_score_codex":0.000018671475,"about_ca_topic_score_gemma":0.000002000347,"teacher_disagreement_score":0.006434502,"about_ca_system_score_codex":0.000068187546,"about_ca_system_score_gemma":0.00003267891,"threshold_uncertainty_score":0.99997616},"labels":[],"label_agreement":null},{"id":"W1981520342","doi":"10.1016/j.molmed.2014.01.006","title":"Gene expression profiling in sepsis: timing, tissue, and translational considerations","year":2014,"lang":"en","type":"review","venue":"Trends in Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":128,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute","keywords":"Sepsis; Gene expression profiling; Gene; Gene expression; Biology; Computational biology; Microarray; Bioinformatics; Medicine; Immunology; Genetics","score_opus":0.04213960675103004,"score_gpt":0.35358469453404445,"score_spread":0.3114450877830144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981520342","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00027188341,0.99750286,0.000500165,0.0002776888,0.00019429965,0.0002957896,0.0000061404635,0.000022958224,0.000928187],"genre_scores_gemma":[0.0020147443,0.9940862,0.001064249,0.000090744754,0.000053408,0.00013707302,0.0018356612,0.000038247497,0.0006796375],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99786836,0.0006772397,0.0008031065,0.00035487072,0.00006045047,0.00023595737],"domain_scores_gemma":[0.9992479,0.00025679014,0.00020564251,0.00024632158,0.00002538107,0.00001797501],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005642932,0.00029238532,0.0010826234,0.0009211934,0.00006046668,0.000006545255,0.000089133486,0.0004827525,0.0006926369],"category_scores_gemma":[0.00016718397,0.00023199241,0.000073919764,0.00027369178,0.00015134182,0.000047851376,0.000030889056,0.0004899573,0.00003519073],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000025741667,0.000039002985,0.000011746068,0.001206152,0.00007520406,0.00007175904,0.00045418853,0.000008903655,0.057038844,0.00066751137,0.0004907277,0.93991023],"study_design_scores_gemma":[0.0028575878,0.00018219689,0.00011012313,0.015284103,0.0004136429,0.0003497971,0.00003965725,0.00001477896,0.027886534,0.0003611156,0.95198214,0.00051832944],"about_ca_topic_score_codex":0.000020521251,"about_ca_topic_score_gemma":0.000013460643,"teacher_disagreement_score":0.9514914,"about_ca_system_score_codex":0.000026374411,"about_ca_system_score_gemma":0.000073799565,"threshold_uncertainty_score":0.9460376},"labels":[],"label_agreement":null},{"id":"W1981555245","doi":"10.1371/journal.pone.0053936","title":"Glucocorticoid Repression of Inflammatory Gene Expression Shows Differential Responsiveness by Transactivation- and Transrepression-Dependent Mechanisms","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"GlaxoSmithKline; AstraZeneca; Canadian Institutes of Health Research; Alberta Innovates; Bristol-Myers Squibb","keywords":"Psychological repression; Transrepression; Cycloheximide; Transactivation; Glucocorticoid receptor; Biology; Glucocorticoid; Molecular biology; Gene expression; Cell biology; Protein biosynthesis; Gene; Endocrinology; Biochemistry","score_opus":0.012049941619393312,"score_gpt":0.19236054972542072,"score_spread":0.1803106081060274,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981555245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912646,0.00092639454,0.0065200753,0.00013364448,0.00011361985,0.00088326243,0.000022422877,0.00006793511,0.00006803802],"genre_scores_gemma":[0.99739105,0.00024978007,0.00037502786,0.000027918555,0.000012454628,0.00017311492,0.00012456,0.000027738897,0.0016183875],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981975,0.0004274846,0.00057367934,0.00038050595,0.00015562405,0.0002652347],"domain_scores_gemma":[0.99886584,0.00023911597,0.00026742497,0.000430841,0.00016154206,0.000035215937],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001948687,0.00021840399,0.00042519052,0.00014505401,0.00015121477,0.000020380525,0.00017414533,0.00034662292,0.0018764726],"category_scores_gemma":[0.00009211852,0.00018547961,0.000071178714,0.000068034475,0.00009676269,0.00036839274,0.000058379213,0.00021719732,0.000073101604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011023078,0.00057983195,0.00033372914,0.00013774268,0.00018651345,9.0304457e-7,0.0005854107,0.0000048118036,0.99521434,0.000046125155,0.00010225481,0.0017060164],"study_design_scores_gemma":[0.0016536263,0.00018360316,0.0041687367,0.00040677516,0.00009499649,0.0000050156327,0.00015950807,0.000058964484,0.9927912,0.0002412563,0.000029883351,0.00020647694],"about_ca_topic_score_codex":0.000040604766,"about_ca_topic_score_gemma":9.018414e-7,"teacher_disagreement_score":0.0061450475,"about_ca_system_score_codex":0.00002434159,"about_ca_system_score_gemma":0.000046197947,"threshold_uncertainty_score":0.99903595},"labels":[],"label_agreement":null},{"id":"W1981556023","doi":"10.2460/ajvr.67.11.1901","title":"Evaluation of the effects of short-chain fatty acids and extracellular pH on bovine neutrophil function in vitro","year":2006,"lang":"en","type":"article","venue":"American Journal of Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Social Sciences and Humanities Research Council; University of Calgary","funders":"","keywords":"In vitro; Function (biology); Extracellular; Chemistry; Neutrophil extracellular traps; Biochemistry; Chain (unit); Biology; Immunology; Cell biology; Inflammation; Physics","score_opus":0.039034904275219266,"score_gpt":0.32821236061628545,"score_spread":0.2891774563410662,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981556023","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956941,0.0036214057,0.000046668305,0.00016185535,0.00015870472,0.00022213276,0.0000011771049,0.0000017167663,0.00009221065],"genre_scores_gemma":[0.99971235,0.00015860394,0.000019216239,0.0000050649337,0.000029234548,0.0000070556453,0.000003558562,0.000007689148,0.000057252873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961867,0.0028129362,0.0004253175,0.00010167616,0.0002860643,0.0001873569],"domain_scores_gemma":[0.99865824,0.0004628831,0.00025909563,0.00018497302,0.00042367895,0.000011110419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003977005,0.00008274726,0.00025535424,0.00030426407,0.000069184374,0.0000050967365,0.0001506609,0.000059670358,0.00001662864],"category_scores_gemma":[0.00032313526,0.000058624853,0.00007349329,0.000339186,0.000490986,0.000087866814,0.000057161524,0.00041318548,0.0000021110814],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005432053,0.00015330412,0.0011594858,0.000029980953,0.00004926184,0.000009434243,0.00012535015,0.000046735215,0.9159438,0.00002987235,0.000026365004,0.07699437],"study_design_scores_gemma":[0.0013116482,0.01143506,0.18457146,0.00016455399,0.000048312104,0.00016419627,0.0002774968,0.00007049942,0.8013832,0.00014130466,0.00037426574,0.000057982194],"about_ca_topic_score_codex":0.00009383718,"about_ca_topic_score_gemma":0.0000016999957,"teacher_disagreement_score":0.18341197,"about_ca_system_score_codex":0.00007996641,"about_ca_system_score_gemma":0.00012353499,"threshold_uncertainty_score":0.23906521},"labels":[],"label_agreement":null},{"id":"W1981562068","doi":"10.1016/j.dci.2010.08.001","title":"Synthetic double-stranded RNA oligonucleotides are immunostimulatory for chicken spleen cells","year":2010,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Research and Innovation; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Poultry Industry Council","keywords":"TLR3; Biology; TLR7; RNA silencing; Interferon; Splenocyte; Innate immune system; Oligonucleotide; RNA; Dicer; Molecular biology; Cell biology; Immune system; Toll-like receptor; MDA5; Messenger RNA; Gene expression; RNA interference; Virology; Gene; Immunology; Biochemistry","score_opus":0.025653362263695755,"score_gpt":0.2687780716986178,"score_spread":0.24312470943492204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981562068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99138325,0.0010612367,0.0002594906,0.00024830503,0.002728358,0.0011569981,0.000046632034,0.00018397914,0.0029317518],"genre_scores_gemma":[0.99565357,0.00005901446,0.001386262,0.00011847282,0.000045678516,0.00024558732,0.00035886015,0.00004247471,0.002090088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99758065,0.00022408662,0.00077954517,0.00058467913,0.000064063795,0.0007669726],"domain_scores_gemma":[0.998438,0.00048393753,0.00039435856,0.0004346776,0.00021297054,0.000036032296],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00042744618,0.00049319863,0.0007822944,0.0003014715,0.00067847787,0.000048597438,0.00060465105,0.0005260962,0.0010614706],"category_scores_gemma":[0.0000563821,0.0004669758,0.00021571356,0.00019321452,0.00075346726,0.00028493712,0.00018899454,0.0007886325,0.0022867578],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027810887,0.0001792791,0.00036529722,0.000018581892,0.00071745156,0.0000046200425,0.0019675926,0.000009630582,0.988739,0.0021060922,0.0012832377,0.0018281167],"study_design_scores_gemma":[0.0053154337,0.00019959499,0.02966949,0.00004960431,0.000053309144,0.00012992686,0.0012111613,0.000009753538,0.8796072,0.00021508141,0.08301541,0.0005240193],"about_ca_topic_score_codex":0.000061845734,"about_ca_topic_score_gemma":0.0000891973,"teacher_disagreement_score":0.1091318,"about_ca_system_score_codex":0.00011304245,"about_ca_system_score_gemma":0.00024220599,"threshold_uncertainty_score":0.9998517},"labels":[],"label_agreement":null},{"id":"W1981601846","doi":"10.1016/j.smim.2009.05.006","title":"The innate immune response to DNA","year":2009,"lang":"en","type":"review","venue":"Seminars in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"AIM2; Innate immune system; TLR9; Inflammasome; Biology; DNA; Toll-Like Receptor 9; Pattern recognition receptor; Immune system; Cell biology; Receptor; Immunology; Genetics; Gene; DNA methylation","score_opus":0.01393118216937973,"score_gpt":0.29112402849065033,"score_spread":0.2771928463212706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981601846","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020721392,0.9929533,0.0000054834686,0.0006244035,0.0023225502,0.0013651873,0.000011168925,0.00009409905,0.0005516464],"genre_scores_gemma":[0.000081319835,0.98195684,0.000030319017,0.00009369881,0.000042868312,0.0003832258,0.00021452716,0.000076445336,0.017120754],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.992141,0.004216902,0.0017134384,0.0006880923,0.00006859281,0.0011719913],"domain_scores_gemma":[0.99545306,0.002218739,0.00059040723,0.0016208967,0.0000923158,0.000024591553],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0032700044,0.00073964853,0.0020203101,0.0010012435,0.00050220673,0.00006844052,0.0016364814,0.0016312451,0.00011918034],"category_scores_gemma":[0.0017059698,0.0005376586,0.0005414963,0.0009976965,0.0004510497,0.00009913471,0.0005085016,0.0016619064,0.0045424257],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021189328,0.00006100393,2.632472e-7,0.00015550962,0.00031981495,0.000042016145,0.00030422988,5.239552e-7,0.011236773,0.00037022165,0.0026949837,0.9826957],"study_design_scores_gemma":[0.0005777345,0.00065257656,0.000112426635,0.005750755,0.0001339293,0.0005815739,0.00016025455,7.064015e-8,0.0015739545,0.00009738679,0.9898181,0.0005412548],"about_ca_topic_score_codex":0.000031388136,"about_ca_topic_score_gemma":0.000014504127,"teacher_disagreement_score":0.9871231,"about_ca_system_score_codex":0.00039775737,"about_ca_system_score_gemma":0.0005947932,"threshold_uncertainty_score":0.9997075},"labels":[],"label_agreement":null},{"id":"W1981730684","doi":"10.1159/000353694","title":"Leukotriene B&lt;sub&gt;4&lt;/sub&gt;, an Endogenous Stimulator of the Innate Immune Response against Pathogens","year":2013,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Innate immune system; Endogeny; Immune system; Immunology; Leukotriene; Biology; Chemistry; Microbiology; Biochemistry","score_opus":0.03951466421878151,"score_gpt":0.2760683833013318,"score_spread":0.2365537190825503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981730684","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.413424,0.58399785,0.0000097865395,0.00004297493,0.0015078684,0.0007963877,0.00009566485,0.000025436126,0.000100053694],"genre_scores_gemma":[0.07333584,0.9255143,0.00004754876,0.00007550052,0.00014119713,0.00004015325,0.00020815345,0.00014789113,0.00048943295],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9834593,0.0106740985,0.004217932,0.00040822182,0.0003478073,0.00089262414],"domain_scores_gemma":[0.9886159,0.0012700135,0.0063685374,0.0021709567,0.0014657921,0.00010883818],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.007135225,0.0010473857,0.0035154307,0.0011577628,0.0007789588,0.00009245297,0.0026708299,0.0015612174,0.00019469985],"category_scores_gemma":[0.0023408995,0.0007034221,0.0020184321,0.0010446337,0.00069273094,0.00056107,0.0007640633,0.0032908062,0.00030837272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017299884,0.00039809712,0.0000029716048,0.0009017095,0.0013451505,0.000050194845,0.0006343514,0.000026219264,0.74632066,0.000030488964,0.0004255222,0.24813463],"study_design_scores_gemma":[0.0025200157,0.0013691798,0.0008737221,0.007136348,0.0013926174,0.002698251,0.00015107584,0.000004149821,0.21460788,0.00003787101,0.7683313,0.00087759644],"about_ca_topic_score_codex":0.00003684308,"about_ca_topic_score_gemma":0.000005461453,"teacher_disagreement_score":0.7679058,"about_ca_system_score_codex":0.0005018758,"about_ca_system_score_gemma":0.002268138,"threshold_uncertainty_score":0.99973494},"labels":[],"label_agreement":null},{"id":"W1981828720","doi":"10.1016/j.vetimm.2015.02.006","title":"In ovo delivery of toll-like receptor 2 ligand, lipoteichoic acid induces pro-inflammatory mediators reducing post-hatch infectious laryngotracheitis virus infection","year":2015,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council; University of Calgary","keywords":"In ovo; Lipoteichoic acid; Biology; TLR2; Toll-like receptor; Immune system; Immunology; Innate immune system; Receptor; Embryo; Viral shedding; Virology; Peripheral blood mononuclear cell; Virus; Microbiology; Cell biology","score_opus":0.014343994631442971,"score_gpt":0.2428487200386709,"score_spread":0.2285047254072279,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981828720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97134304,0.023424372,0.000015505288,0.00026104765,0.0040429533,0.0005439907,0.000022720065,0.00014106854,0.00020528157],"genre_scores_gemma":[0.9935319,0.0054746405,0.000066653956,0.00016456714,0.00007120091,0.00016097852,0.00019473984,0.00005122447,0.0002840966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9957476,0.001610652,0.0011695371,0.0006407242,0.00008080149,0.0007506566],"domain_scores_gemma":[0.9982508,0.0002381705,0.0005714163,0.00060119486,0.00028838063,0.000050043578],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012307117,0.00050566404,0.00091092516,0.0009918285,0.0002618913,0.00002319448,0.00032025398,0.0012946262,0.00013491458],"category_scores_gemma":[0.00040917174,0.0005210713,0.00014709076,0.00041179697,0.000921769,0.0009375151,0.00039662022,0.0010637819,0.0003100063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033331162,0.0002811916,0.00544569,0.000068300986,0.00024691736,0.00015565369,0.0041250507,0.0000067293454,0.97631806,0.000086069136,0.00017909825,0.009754101],"study_design_scores_gemma":[0.0055077425,0.007188779,0.07809204,0.00016933325,0.00009382465,0.0075655533,0.0010472226,0.000004097501,0.8859061,0.0001708141,0.013543397,0.00071107276],"about_ca_topic_score_codex":0.0012620282,"about_ca_topic_score_gemma":0.0000763392,"teacher_disagreement_score":0.09041195,"about_ca_system_score_codex":0.00017342267,"about_ca_system_score_gemma":0.00033026884,"threshold_uncertainty_score":0.9997241},"labels":[],"label_agreement":null},{"id":"W1981998280","doi":"10.1152/ajplung.00367.2002","title":"Role of IFN-γ and IL-2 in rat lung epithelial cell migration and apoptosis after oxidant injury","year":2004,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Apoptosis; Molecular biology; In vivo; Receptor; Biology; Programmed cell death; Biochemistry","score_opus":0.0015407022593814242,"score_gpt":0.18986232925846874,"score_spread":0.1883216269990873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1981998280","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99102795,0.008363197,0.0001309576,0.00015638357,0.00013198979,0.00016109935,0.000009002269,0.0000062677454,0.000013147296],"genre_scores_gemma":[0.99779034,0.0017657945,0.00021162852,0.00013739638,0.000032626358,0.00001018673,0.000022952467,0.000018668547,0.000010408954],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826145,0.0005082128,0.0005781374,0.0002924677,0.000044440116,0.00031527184],"domain_scores_gemma":[0.9990548,0.000085095046,0.00053273374,0.00018625385,0.00009718251,0.00004393721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024935036,0.0002469545,0.00070514705,0.00028363866,0.00006416635,0.00000721277,0.00012086184,0.00018286977,0.000015453455],"category_scores_gemma":[0.000033156182,0.0002109174,0.000119672615,0.00015194333,0.0007981749,0.0001324103,0.00010183409,0.00035326256,0.0000026825132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001773154,0.0001134966,0.0002870713,0.000052795505,0.00013051003,0.000005446395,0.0009457199,0.000046000154,0.994315,0.0001554662,0.000007920666,0.0021673858],"study_design_scores_gemma":[0.001541824,0.0013575653,0.023158738,0.00006718682,0.00010635282,0.00006586595,0.00058643514,0.000024054816,0.97179997,0.0008517413,0.00023881187,0.00020144045],"about_ca_topic_score_codex":0.0001869936,"about_ca_topic_score_gemma":0.0000062457807,"teacher_disagreement_score":0.022871666,"about_ca_system_score_codex":0.000029308723,"about_ca_system_score_gemma":0.00007805285,"threshold_uncertainty_score":0.8600962},"labels":[],"label_agreement":null},{"id":"W1982114976","doi":"10.1186/cc13912","title":"Polymyxin B hemoperfusion: a mechanistic perspective","year":2014,"lang":"en","type":"review","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Hemoperfusion; Medicine; Septic shock; Intensive care medicine; Renal replacement therapy; Polymyxin B; Dosing; Sepsis; Polymyxin; Pharmacology; Colistin; Internal medicine; Antibiotics; Biology; Microbiology; Hemodialysis","score_opus":0.03157539167608079,"score_gpt":0.36550848713557277,"score_spread":0.33393309545949196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982114976","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000016835132,0.9878683,0.00022258074,0.00011551058,0.0011255565,0.00037091956,0.000045490593,0.00009811391,0.010151849],"genre_scores_gemma":[0.0011345424,0.9960037,0.000029151863,0.00009903226,0.00018741532,0.00010757595,0.00048499295,0.00005424087,0.0018993746],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978976,0.000724608,0.00044985622,0.00045833815,0.00004857216,0.00042102684],"domain_scores_gemma":[0.99843264,0.0006865405,0.00007755613,0.00046388712,0.00030448724,0.000034868586],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016668018,0.00038533538,0.0012942966,0.0001657867,0.0002570106,0.000035914076,0.00030726395,0.00088042056,0.0016430821],"category_scores_gemma":[0.0013255181,0.00030468625,0.0005147912,0.00014045862,0.00023376581,0.000047583817,0.00015214353,0.00067015435,0.0057896725],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038849284,0.000034387507,4.3105544e-8,0.01283393,0.0001182984,0.000034595916,0.0005312912,1.1850049e-8,0.00018237057,0.15555297,0.001675775,0.8289975],"study_design_scores_gemma":[0.0001639584,0.00017404505,1.3544262e-7,0.0034423396,0.00076842215,0.00023049995,0.0010737837,1.9456003e-7,0.00023460531,0.00036898296,0.993189,0.00035404993],"about_ca_topic_score_codex":0.000024494211,"about_ca_topic_score_gemma":0.0000023135037,"teacher_disagreement_score":0.9915132,"about_ca_system_score_codex":0.00025114763,"about_ca_system_score_gemma":0.00028916475,"threshold_uncertainty_score":0.9999405},"labels":[],"label_agreement":null},{"id":"W1982251171","doi":"10.1074/jbc.m508416200","title":"Human Serum from Patients with Septic Shock Activates Transcription Factors STAT1, IRF1, and NF-κB and Induces Apoptosis in Human Cardiac Myocytes","year":2005,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Laurentian University","funders":"","keywords":"Apoptosis; IRF1; Septic shock; NF-κB; Myocyte; STAT1; Cell biology; Transcription factor; Cardiac myocyte; Heat shock factor; NFKB1; Cancer research; Chemistry; Heat shock protein; Internal medicine; Biology; Sepsis; Hsp70; Medicine; Signal transduction; Gene; Biochemistry","score_opus":0.012782594432188377,"score_gpt":0.22338770424219992,"score_spread":0.21060510981001154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982251171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99868786,0.0010385806,0.000001563167,0.000079237274,0.000035154917,0.000069314316,0.000025248788,0.00000943526,0.00005359902],"genre_scores_gemma":[0.9996315,0.00012271982,0.000024376499,0.000017406717,0.000042012358,0.0000020111152,0.000092637754,0.0000061472315,0.00006117379],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991447,0.00010934121,0.00036721633,0.00015663762,0.000042122578,0.00018003533],"domain_scores_gemma":[0.99952,0.00008823021,0.00023580319,0.00007054603,0.00005518042,0.000030209647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014555358,0.00016317857,0.00033954863,0.000047932823,0.000113059185,0.000021992271,0.00008639507,0.00030580378,0.0001521926],"category_scores_gemma":[0.000038048194,0.00010388236,0.000057874626,0.000048538506,0.00015521469,0.00018642639,0.000025162204,0.0003694891,0.0000012421261],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019618424,0.00008471809,0.1341756,0.000010073,0.000097195756,5.6539415e-7,0.00038262858,0.0000013162739,0.8638874,0.0000015878786,0.000018129043,0.0011445595],"study_design_scores_gemma":[0.00086940924,0.00022509637,0.34353825,0.000045187124,0.000023092414,0.0000024336023,0.00037146796,1.3240869e-7,0.65452933,0.00002819551,0.00027216508,0.00009519128],"about_ca_topic_score_codex":0.000021111853,"about_ca_topic_score_gemma":0.0000020947339,"teacher_disagreement_score":0.20936267,"about_ca_system_score_codex":0.000059378977,"about_ca_system_score_gemma":0.000018999315,"threshold_uncertainty_score":0.42362},"labels":[],"label_agreement":null},{"id":"W1982328089","doi":"10.1016/j.cub.2004.04.033","title":"Recognition of Bacteria in the Cytosol of Mammalian Cells by the Ubiquitin System","year":2004,"lang":"en","type":"article","venue":"Current Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":306,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; Hospital for Sick Children","funders":"","keywords":"Biology; Cytosol; Intracellular; Bacteria; Salmonella; Vacuole; Microbiology; Intracellular parasite; Extracellular; Cell biology; Biochemistry; Genetics; Enzyme; Cytoplasm","score_opus":0.020429774454403516,"score_gpt":0.2516553199686441,"score_spread":0.23122554551424057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982328089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954125,0.002900596,0.000103321436,0.00026746278,0.0007672979,0.00028876922,0.000071352275,0.000009539848,0.00017910212],"genre_scores_gemma":[0.9994025,0.00015160408,0.000006883034,0.000022890448,0.00002028895,0.000030507597,0.0003443798,0.0000041207923,0.000016829243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865663,0.0006381205,0.00039898616,0.00011683181,0.000016218344,0.00017321216],"domain_scores_gemma":[0.9994045,0.00013757018,0.00020102436,0.00020627279,0.00004680501,0.0000038134333],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005237833,0.000093450464,0.00019519741,0.000062882675,0.00004897077,0.0000027575634,0.00024315888,0.00015116225,0.000064321066],"category_scores_gemma":[0.000035388075,0.000052817813,0.000063216125,0.00010676298,0.00022279726,0.000031762705,0.000031980744,0.00017028574,0.00011779725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014678495,0.00007374664,0.00010190517,0.000056635774,0.000018704919,2.2610263e-7,0.0007358636,0.0000011746343,0.98302543,0.00156534,0.00029875027,0.013975443],"study_design_scores_gemma":[0.0008794059,0.00020892818,0.0017549164,0.000103619255,0.00002045571,0.000024839954,0.00081435055,6.750396e-7,0.9840769,0.00019637922,0.011850724,0.00006879545],"about_ca_topic_score_codex":0.00013592071,"about_ca_topic_score_gemma":0.000015168174,"teacher_disagreement_score":0.013906648,"about_ca_system_score_codex":0.00002499561,"about_ca_system_score_gemma":0.000038296075,"threshold_uncertainty_score":0.2153848},"labels":[],"label_agreement":null},{"id":"W1982424442","doi":"10.1016/j.vaccine.2009.12.069","title":"Efficacy of poly[di(sodium carboxylatophenoxy)phosphazene] (PCPP) as mucosal adjuvant to induce protective immunity against respiratory pathogens","year":2010,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Bill and Melinda Gates Foundation","keywords":"Nasal administration; Immunology; Adjuvant; Antigen; Bordetella pertussis; Vaccination; Medicine; Immunoglobulin A; Microbiology; Immunoglobulin G; Biology","score_opus":0.009281857278858911,"score_gpt":0.24165437477519358,"score_spread":0.23237251749633467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982424442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99437857,0.0019208386,0.000043418953,0.00032917914,0.001017739,0.00096485834,0.000026458381,0.000107808766,0.0012111515],"genre_scores_gemma":[0.9987969,0.00002142031,0.000058228004,0.00032081132,0.00010131977,0.000077184486,0.00007101043,0.000039506787,0.00051363796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99811316,0.00035696797,0.00061845145,0.00036283146,0.00007725857,0.0004713064],"domain_scores_gemma":[0.998332,0.00019318957,0.0002842405,0.0008471874,0.00028042457,0.00006290916],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00067221094,0.00030257498,0.0004920487,0.00029992085,0.0002480001,0.000013501838,0.00042217545,0.00046852033,0.00031631265],"category_scores_gemma":[0.0008882279,0.00027262865,0.00014725444,0.00040576252,0.000046742185,0.00013560719,0.00022876683,0.00090768,0.0007370959],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021779605,0.00020580707,0.0012941939,0.000018327435,0.00012993647,0.000008649544,0.0011077587,0.000004360108,0.96751046,0.00035999206,0.00027752202,0.026905006],"study_design_scores_gemma":[0.002736774,0.0006130911,0.14037739,0.000039396044,0.000040041246,0.00002002862,0.00018492952,0.000002119448,0.8319722,0.000038970087,0.02370873,0.00026635823],"about_ca_topic_score_codex":0.00041845944,"about_ca_topic_score_gemma":0.00009039638,"teacher_disagreement_score":0.13908319,"about_ca_system_score_codex":0.000052884134,"about_ca_system_score_gemma":0.00027948414,"threshold_uncertainty_score":0.9999726},"labels":[],"label_agreement":null},{"id":"W1982667029","doi":"10.1371/journal.ppat.1000233","title":"FimH Adhesin of Type 1 Fimbriae Is a Potent Inducer of Innate Antimicrobial Responses Which Requires TLR4 and Type 1 Interferon Signalling","year":2008,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":128,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; McMaster University; McMaster University Medical Centre","funders":"Université Paris-Est Créteil Val-de-Marne; Canadian Institutes of Health Research; Hospital for Sick Children; Sick Kids Foundation","keywords":"Fimbria; Bacterial adhesin; Interferon; Innate immune system; Microbiology; Inducer; Biology; Antimicrobial; TLR4; Neisseria; Escherichia coli; Cell biology; Immunology; Gene; Signal transduction; Bacteria; Immune system; Genetics","score_opus":0.041350539448723266,"score_gpt":0.24747612352780957,"score_spread":0.2061255840790863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1982667029","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976129,0.0015854375,0.000010592918,0.00016308177,0.00021708649,0.00017905317,0.00004659498,0.000025280122,0.00015998134],"genre_scores_gemma":[0.99814487,0.00088542566,0.00013226041,0.00006904899,0.00002057385,0.0000028664988,0.00005312068,0.000019692801,0.000672149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870944,0.00030302114,0.0004796196,0.00022683252,0.000052113777,0.00022899224],"domain_scores_gemma":[0.99895626,0.00016311783,0.00024189879,0.00023726908,0.0003851798,0.000016249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024486321,0.00016426049,0.000365349,0.00021308244,0.00010763099,0.0000049537484,0.00013370308,0.0002574745,0.00020758522],"category_scores_gemma":[0.00038121516,0.00014997262,0.00005978144,0.0002687876,0.00018437143,0.00009815481,0.00009867426,0.00018731998,0.000077494195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032944542,0.00012116057,0.002741272,0.00006287518,0.00018436216,0.000009095129,0.0024861647,0.0000049431765,0.98984665,0.000026705768,0.0006371954,0.0005851508],"study_design_scores_gemma":[0.00059909216,0.000761422,0.012051455,0.00018867262,0.00007155856,0.00006384525,0.000111827605,0.000019890356,0.98531234,0.000013999406,0.00065517524,0.00015074892],"about_ca_topic_score_codex":0.00004046699,"about_ca_topic_score_gemma":0.0000049783353,"teacher_disagreement_score":0.009310182,"about_ca_system_score_codex":0.000019282921,"about_ca_system_score_gemma":0.00015429575,"threshold_uncertainty_score":0.6115706},"labels":[],"label_agreement":null},{"id":"W1983294736","doi":"10.1053/meta.2000.9525","title":"The tissue distribution of tumor necrosis factor-α in rats: A compartmental model","year":2000,"lang":"en","type":"article","venue":"Metabolism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Tumor necrosis factor alpha; Receptor; Mediator; In vivo; Endocrinology; Cytokine; Internal medicine; Cell; Biology; Chemistry; Cell biology; Cancer research; Immunology; Medicine; Biochemistry","score_opus":0.010613746412674298,"score_gpt":0.24233863022564578,"score_spread":0.2317248838129715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983294736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522,0.0037062557,0.000065562024,0.00017570406,0.00015067484,0.00017623242,0.00006241337,0.000015869085,0.00042730063],"genre_scores_gemma":[0.99692756,0.00026936393,0.00001195964,0.000034721175,0.000009101834,0.000023142773,0.00016785154,0.000005151454,0.002551143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992296,0.0001680231,0.00028075904,0.00010075447,0.000028529957,0.00019231348],"domain_scores_gemma":[0.99967766,0.00005569947,0.00006556357,0.0001711513,0.000023167982,0.000006773103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016864183,0.000090091926,0.00018681043,0.000027934497,0.000121686404,0.000010183743,0.00012781135,0.000063119835,0.0003334897],"category_scores_gemma":[0.000021597813,0.000063217085,0.00004810652,0.00009914818,0.000108165405,0.0000947671,0.000018894725,0.00011441186,0.00023504335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005350159,0.0001069622,0.00020124225,0.0000055195055,0.000047313635,9.778333e-7,0.00062865904,0.00020598987,0.95301193,0.0028700386,0.0024083715,0.039977964],"study_design_scores_gemma":[0.0009391465,0.000027722894,0.03819197,0.000011761241,0.000019285042,0.000007610904,0.00006643165,0.00039051817,0.7825244,0.00039389826,0.17732665,0.000100621735],"about_ca_topic_score_codex":0.000080981685,"about_ca_topic_score_gemma":0.000012780891,"teacher_disagreement_score":0.17491828,"about_ca_system_score_codex":0.000020512574,"about_ca_system_score_gemma":0.000028706207,"threshold_uncertainty_score":0.36514786},"labels":[],"label_agreement":null},{"id":"W1983463692","doi":"10.1111/joa.12039","title":"Expression of Toll‐like receptor 9 in mouse and human lungs","year":2013,"lang":"en","type":"article","venue":"Journal of Anatomy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Innate immune system; Biology; Receptor; Immune system; In situ hybridization; Lung; Toll-like receptor; Cell biology; RNA; Cytoplasm; Pathology; Immunology; Gene expression; Gene; Medicine; Internal medicine; Genetics","score_opus":0.005385724289357514,"score_gpt":0.238073256100457,"score_spread":0.23268753181109947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983463692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979876,0.0013578073,0.000008514726,0.00021164733,0.00011741187,0.00006644706,5.931132e-7,0.0000027588833,0.00024719926],"genre_scores_gemma":[0.99854594,0.00015378308,0.00008973121,0.000028622317,0.000012876822,0.0000013109694,0.0000026410369,0.000004409726,0.0011606802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933684,0.000112319794,0.0003797582,0.000048478596,0.000027708953,0.00009490079],"domain_scores_gemma":[0.99950343,0.00004386053,0.00027658168,0.00007283693,0.00009134343,0.000011927584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024024547,0.000058599042,0.00018694729,0.00019192621,0.00003357423,0.000006552462,0.000082979575,0.00010792614,0.00048848917],"category_scores_gemma":[0.000033489825,0.00004417348,0.000042742562,0.000047900547,0.000054581276,0.00024532506,0.000025886971,0.00017720081,0.000029450019],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009608602,0.000040853844,0.0034015279,0.000011366999,0.000018087338,0.0000016859827,0.00035667964,5.3650894e-7,0.98874676,0.00010839444,0.00574292,0.001475118],"study_design_scores_gemma":[0.0012385644,0.00020726996,0.017012691,0.000096196454,0.000006392888,0.000052765718,0.0003858457,7.7766475e-7,0.96147245,0.00010790852,0.019362433,0.000056721583],"about_ca_topic_score_codex":0.00004853495,"about_ca_topic_score_gemma":0.0000024654003,"teacher_disagreement_score":0.02727431,"about_ca_system_score_codex":0.00001774837,"about_ca_system_score_gemma":0.00002506289,"threshold_uncertainty_score":0.5348614},"labels":[],"label_agreement":null},{"id":"W1983782874","doi":"10.1016/j.cyto.2008.07.105","title":"64 Interleukin-1β and tumor necrosis factor-α","year":2008,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc","funders":"","keywords":"Tumor necrosis factor alpha; Tumor necrosis factor α; Interleukin 1β; Interleukin; Tumor necrosis factors; Medicine; Immunology; Cytokine","score_opus":0.01558389688261351,"score_gpt":0.21955946087755965,"score_spread":0.20397556399494615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983782874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971661,0.0010171714,0.00006159849,0.00024275761,0.00026899812,0.00008989432,0.000008235062,0.00006512697,0.0010801504],"genre_scores_gemma":[0.99481314,0.00013285545,0.000037270365,0.00019030143,0.000026283247,0.000008227298,0.00003897209,0.000010312212,0.0047426624],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939734,0.0000654741,0.00017650494,0.00015129376,0.000017881284,0.00019151047],"domain_scores_gemma":[0.99967057,0.00005828537,0.000056697278,0.00016694561,0.00003372257,0.000013788749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000060578,0.000110548055,0.00016374058,0.00007827555,0.00016660239,0.000008040015,0.00008658713,0.00008788833,0.0005944544],"category_scores_gemma":[0.00005941331,0.00009404574,0.000042178093,0.0000652578,0.00016082841,0.000108336644,0.000058733185,0.0001389299,0.0006460646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002028124,0.00002968816,0.0035032483,0.000008091053,0.000048193255,0.000014684001,0.0008182726,2.5822615e-7,0.98768246,0.0003920363,0.003584137,0.003716104],"study_design_scores_gemma":[0.0010180661,0.0001558232,0.12192888,0.00001929372,0.000010969514,0.00051054003,0.00005872143,0.0000020156288,0.766444,0.000074957694,0.10962702,0.00014966747],"about_ca_topic_score_codex":0.000043473803,"about_ca_topic_score_gemma":0.0000036268764,"teacher_disagreement_score":0.22123843,"about_ca_system_score_codex":0.000020377265,"about_ca_system_score_gemma":0.00002613351,"threshold_uncertainty_score":0.8304069},"labels":[],"label_agreement":null},{"id":"W1983788321","doi":"10.1016/j.molimm.2008.02.028","title":"Porcine TLR8 and TLR7 are both activated by a selective TLR7 ligand, imiquimod","year":2008,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"TLR7; Transfection; Biology; Molecular biology; Receptor; TLR9; Toll-like receptor; Innate immune system; Cell biology; Biochemistry; Gene; Gene expression","score_opus":0.004861016315218218,"score_gpt":0.1947501258917874,"score_spread":0.18988910957656918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983788321","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9774706,0.019354537,0.0006976356,0.00093620614,0.0002845834,0.00036978137,0.000016048121,0.00016287829,0.0007077771],"genre_scores_gemma":[0.9956331,0.0011094388,0.000058844278,0.0004569925,0.000014552948,0.000056465542,0.00024628005,0.000047588022,0.002376686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99787074,0.0005116622,0.0004217285,0.00051412557,0.000051693154,0.00063003454],"domain_scores_gemma":[0.99901444,0.000106533735,0.0002653396,0.00044727992,0.00013701194,0.00002938378],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00018162162,0.00036417562,0.00054949074,0.00024814106,0.00041276656,0.000014126632,0.00024645994,0.00063118286,0.00013081903],"category_scores_gemma":[0.00017058299,0.00035140073,0.00011444859,0.00029611375,0.0005297204,0.00017007234,0.00016111968,0.0005953261,0.000291467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009860861,0.00013033062,0.0007272117,0.000008799087,0.00058203,0.00010517705,0.00056515256,0.0000020964076,0.99073863,0.00027023777,0.004462132,0.0014221211],"study_design_scores_gemma":[0.0027434079,0.00052274344,0.013182353,0.00002800107,0.000053264546,0.0013590906,0.00019877481,0.0000036471995,0.95461,0.00013440786,0.026800798,0.00036351877],"about_ca_topic_score_codex":0.00015414222,"about_ca_topic_score_gemma":0.000005611334,"teacher_disagreement_score":0.036128633,"about_ca_system_score_codex":0.000083440405,"about_ca_system_score_gemma":0.000104684244,"threshold_uncertainty_score":0.9998938},"labels":[],"label_agreement":null},{"id":"W1983959087","doi":"10.1007/s00441-010-1026-0","title":"Avian toll-like receptors","year":2010,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":254,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Zebra finch; Biology; Genome; TRIF; Gene; Phylogenetics; Evolutionary biology; Genetics; Receptor; Toll-like receptor; Innate immune system","score_opus":0.06895539845014342,"score_gpt":0.38519960533227166,"score_spread":0.31624420688212823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1983959087","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000119260614,0.98817587,0.0000020087168,0.00004726761,0.0014603431,0.00071109866,0.0000050327003,0.000039351627,0.0094397655],"genre_scores_gemma":[0.000033352248,0.8521313,0.000014056308,0.00000453621,0.00011701012,0.00009061007,0.00035449318,0.0000402382,0.1472144],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99718326,0.0011529911,0.00043875782,0.00046860627,0.00009342628,0.0006629457],"domain_scores_gemma":[0.9986008,0.0005808638,0.000116513955,0.00052751735,0.000119970726,0.00005437379],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0014593827,0.00030375618,0.0009078412,0.0005011098,0.00045671087,0.00006823987,0.00040975102,0.0013153086,0.0019217279],"category_scores_gemma":[0.00010713473,0.00023386002,0.00014663071,0.00031659007,0.0004212216,0.00007725598,0.000275926,0.0022688003,0.009042929],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017331271,0.000035959023,8.990454e-7,0.0023694255,0.000044785425,0.000014113514,0.00010434815,2.3188833e-9,0.0023399682,0.00013909719,0.0114542125,0.98347986],"study_design_scores_gemma":[0.00020083548,0.00014031053,0.00000136313,0.0011475341,0.000070862996,0.000119037635,0.00003833051,4.3038533e-8,0.0038647377,0.000032940203,0.99414146,0.00024252674],"about_ca_topic_score_codex":0.0000563736,"about_ca_topic_score_gemma":0.00000992266,"teacher_disagreement_score":0.9832373,"about_ca_system_score_codex":0.00004605642,"about_ca_system_score_gemma":0.00030693907,"threshold_uncertainty_score":0.99998116},"labels":[],"label_agreement":null},{"id":"W1984439686","doi":"10.1016/j.vetimm.2012.10.013","title":"Immunostimulatory properties of Toll-like receptor ligands in chickens","year":2012,"lang":"en","type":"review","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":125,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Guelph","funders":"","keywords":"Biology; Immune system; Receptor; Context (archaeology); Toll-like receptor; Acquired immune system; Microbiology; Innate immune system; Pattern recognition receptor; Antigen; Immunity; Virus; Cell biology; Immunology; Genetics","score_opus":0.05038663834894806,"score_gpt":0.2790222841439886,"score_spread":0.22863564579504053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984439686","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19821984,0.7979876,0.0000016955541,0.000021764017,0.0027017738,0.00081554975,0.000036171423,0.00007955977,0.00013607445],"genre_scores_gemma":[0.07001636,0.92815804,0.000028609336,0.000029990233,0.000045511333,0.00029238203,0.00042013417,0.00010697228,0.0009020139],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99395853,0.001924088,0.0021521107,0.0007699281,0.000060327133,0.0011350086],"domain_scores_gemma":[0.9973286,0.0003636071,0.001042327,0.001137612,0.000096962714,0.000030909632],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011653916,0.001014034,0.003612746,0.0012832558,0.00026091846,0.000016592603,0.0007674132,0.0026329444,0.00030927977],"category_scores_gemma":[0.00014168833,0.0008679662,0.0004948984,0.0004208998,0.0016683138,0.0003690586,0.0008131796,0.0017916546,0.00071999105],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015530246,0.00048106923,0.00006739265,0.0054318192,0.0010788464,0.00007941509,0.001706278,1.6911237e-7,0.40817046,0.0003103,0.00005975868,0.5810615],"study_design_scores_gemma":[0.0017780473,0.002017828,0.0006766084,0.005642121,0.0006707256,0.007494765,0.00028006386,2.5103708e-7,0.0061375354,0.000016949438,0.9742803,0.0010048226],"about_ca_topic_score_codex":0.00006743476,"about_ca_topic_score_gemma":0.0000025079842,"teacher_disagreement_score":0.9742205,"about_ca_system_score_codex":0.0001408106,"about_ca_system_score_gemma":0.00033058567,"threshold_uncertainty_score":0.99937713},"labels":[],"label_agreement":null},{"id":"W1984772099","doi":"10.1016/s0165-5728(01)00402-7","title":"Inflammatory gene transcription in human astrocytes exposed to hypoxia: roles of the nuclear factor-κB and autocrine stimulation","year":2001,"lang":"en","type":"article","venue":"Journal of Neuroimmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Surgical Specialties (Canada); Institute for Biological Sciences","funders":"","keywords":"Autocrine signalling; Hypoxia (environmental); Astrocyte; NFKB1; Biology; Interleukin; Endocrinology; Cell biology; Transcription factor; Receptor; Molecular biology; Internal medicine; Chemistry; Cytokine; Immunology; Biochemistry; Medicine; Gene; Central nervous system","score_opus":0.016181698240966092,"score_gpt":0.23429705972481818,"score_spread":0.21811536148385208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984772099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979374,0.0009387433,0.000037427762,0.00053458515,0.00033107016,0.00017325809,0.0000016516794,0.000010407251,0.000035461],"genre_scores_gemma":[0.99956,0.00019671727,0.000035324512,0.00006574337,0.000021177872,0.0000016924333,0.00000241704,0.000013321776,0.00010360216],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998543,0.0004106808,0.00068860507,0.0001138278,0.00005128532,0.00019260403],"domain_scores_gemma":[0.9992043,0.00008662019,0.00040318008,0.0001812002,0.000112183996,0.000012559066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021655827,0.00012951804,0.00031002186,0.00034346967,0.00010379372,0.000009214185,0.00021968855,0.0001581552,0.00007780986],"category_scores_gemma":[0.00011320906,0.00009989581,0.00009184867,0.00015039911,0.00013178031,0.00019816025,0.000057161607,0.00033991417,0.000007326452],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001003678,0.00006544181,0.0047355136,0.0000070528545,0.000053534397,0.00001122593,0.0010597709,0.00021652995,0.9889327,0.00014788727,0.000024929826,0.003741699],"study_design_scores_gemma":[0.0015503733,0.0006529838,0.68735003,0.00004248653,0.000019797808,0.0004285886,0.00017572989,0.0000097534175,0.30554214,0.000045380726,0.0041135177,0.00006921399],"about_ca_topic_score_codex":0.0000087526605,"about_ca_topic_score_gemma":0.000016299735,"teacher_disagreement_score":0.6833906,"about_ca_system_score_codex":0.000042718988,"about_ca_system_score_gemma":0.00003813072,"threshold_uncertainty_score":0.4073633},"labels":[],"label_agreement":null},{"id":"W1984774118","doi":"10.1158/1538-7445.am2014-1963","title":"Abstract 1963: Toll-like receptor activation in bacterial pneumonia increases lung cancer cell adhesion and metastasis formation","year":2014,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"TLR2; TLR4; Metastasis; Pneumonia; Lung cancer; Immunology; Lipopolysaccharide; Medicine; Biology; Cancer research; Pathology; Cancer; Microbiology; Inflammation; Internal medicine","score_opus":0.029087493196512694,"score_gpt":0.3323720746071759,"score_spread":0.30328458141066317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1984774118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641734,0.0020627805,0.000020179441,0.00040374085,0.00029815064,0.00040038035,0.000016304604,0.000023948027,0.00035717044],"genre_scores_gemma":[0.9962988,0.0026517096,0.0000141763285,0.000034540426,0.000094413685,0.00025849385,0.00017682849,0.000015784331,0.00045528766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983434,0.00062702567,0.00029951168,0.00024475486,0.00010219172,0.00038312687],"domain_scores_gemma":[0.9992113,0.00032140384,0.00010450699,0.00018556752,0.00014919425,0.00002801893],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010898216,0.00012876367,0.00020003747,0.00023618511,0.00023960734,0.000050056933,0.00013376793,0.00019561774,0.0015802599],"category_scores_gemma":[0.00014437763,0.0001160226,0.00003426899,0.00019084282,0.00009307723,0.0006480184,0.00007971685,0.0003327902,0.000075178585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009905968,0.000044468903,0.00064098596,0.000117383235,0.000021999123,2.30775e-7,0.00043292702,0.000006214412,0.9681406,0.00004040659,0.0027568517,0.02680731],"study_design_scores_gemma":[0.0012149716,0.00008913126,0.02288672,0.0001788733,0.000010729693,0.000001250703,0.00021883847,0.000033320506,0.94183123,0.000019344445,0.03338179,0.00013379913],"about_ca_topic_score_codex":0.0070479107,"about_ca_topic_score_gemma":0.00088479585,"teacher_disagreement_score":0.030624937,"about_ca_system_score_codex":0.00035767708,"about_ca_system_score_gemma":0.00013340074,"threshold_uncertainty_score":0.99956423},"labels":[],"label_agreement":null},{"id":"W1985133443","doi":"10.1371/journal.pone.0052614","title":"Whole Cigarette Smoke Increased the Expression of TLRs, HBDs, and Proinflammory Cytokines by Human Gingival Epithelial Cells through Different Signaling Pathways","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fondation de l’Université Laval; Université Laval","keywords":"Signal transduction; Cigarette smoke; Cell biology; Biology; Toxicology","score_opus":0.03061025467023468,"score_gpt":0.21656337259220323,"score_spread":0.18595311792196856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985133443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959617,0.003169806,0.00003506339,0.00013622979,0.00009317276,0.00037383864,0.000059196358,0.000047655707,0.00012330677],"genre_scores_gemma":[0.9991811,0.00010125262,0.000033440938,0.00005687345,0.0001021957,0.00003877639,0.00017644213,0.000021015301,0.00028889728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867266,0.00037441275,0.0003592528,0.00017169047,0.00009120732,0.00033078543],"domain_scores_gemma":[0.99921745,0.00019564659,0.00022656092,0.00028507403,0.000054163556,0.00002107526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034456627,0.00019041201,0.0003192502,0.00004540337,0.00030175113,0.000014959127,0.00016416685,0.0001821483,0.00013255002],"category_scores_gemma":[0.00005542731,0.00012748716,0.0000627944,0.00004747804,0.0001857651,0.00020551652,0.00011570859,0.00025493186,0.000022672655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021954165,0.00049435894,0.0018771605,0.000072907635,0.00015756409,4.4819964e-7,0.0017527798,3.2497528e-7,0.9947466,0.00012496197,0.00039138895,0.0001619663],"study_design_scores_gemma":[0.0008795206,0.00013552666,0.005475424,0.00021697332,0.00013916638,0.0000025628237,0.00023255452,0.0000020877535,0.99186546,0.000099122466,0.0007929718,0.00015862877],"about_ca_topic_score_codex":0.00005784885,"about_ca_topic_score_gemma":0.0000010073749,"teacher_disagreement_score":0.0035982635,"about_ca_system_score_codex":0.000018563807,"about_ca_system_score_gemma":0.000016476744,"threshold_uncertainty_score":0.51987755},"labels":[],"label_agreement":null},{"id":"W1985469556","doi":"10.1182/blood-2003-01-0288","title":"Bacterial lipopolysaccharide directly induces angiogenesis through TRAF6-mediated activation of NF-κB and c-Jun N-terminal kinase","year":2003,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Angiogenesis; Tumor necrosis factor alpha; Cell biology; NF-κB; Signal transduction; Lipopolysaccharide; Basic fibroblast growth factor; Cancer research; Kinase; Cytokine; Biology; Chemistry; Receptor; Immunology; Growth factor; Biochemistry","score_opus":0.012092498646502267,"score_gpt":0.22365073887441606,"score_spread":0.21155824022791378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985469556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980061,0.0010634894,0.000020823534,0.00005010877,0.00026430032,0.00015634549,0.0000137285815,0.00003582221,0.0003892623],"genre_scores_gemma":[0.9993945,0.00016699356,0.00010362265,0.000027726062,0.000032696084,0.000016264657,0.00009693738,0.000012301472,0.00014898009],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990466,0.00024954698,0.00028934664,0.00018360499,0.000033789547,0.00019709243],"domain_scores_gemma":[0.9994679,0.00014404579,0.0001658531,0.00015564023,0.00005410448,0.000012448701],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018414245,0.00014026529,0.00022828454,0.00009633416,0.00010382606,0.000012154719,0.00007424843,0.00022619017,0.00023950501],"category_scores_gemma":[0.00022073058,0.00012853119,0.0000745657,0.00010719994,0.00010216512,0.00022905286,0.000019702087,0.00008920218,0.000035545134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023744523,0.00019609193,0.0004204138,0.000018942603,0.00017222256,0.000003868603,0.0007019045,1.5657172e-7,0.9959782,0.00025354078,0.000046109944,0.001971134],"study_design_scores_gemma":[0.0020290355,0.00017701255,0.003143561,0.00003424166,0.00011851879,0.000068024405,0.00016891798,2.0663094e-7,0.99092644,0.00004929285,0.003148574,0.00013615604],"about_ca_topic_score_codex":0.00009635299,"about_ca_topic_score_gemma":0.000004809277,"teacher_disagreement_score":0.005051711,"about_ca_system_score_codex":0.000008755529,"about_ca_system_score_gemma":0.000067329005,"threshold_uncertainty_score":0.52413493},"labels":[],"label_agreement":null},{"id":"W1985672380","doi":"10.1016/s0016-5085(00)82459-2","title":"Glucocorticoids induce monocyte apoptosis but protect intestinal epithelial cells in a co-culture model","year":2000,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Apoptosis; Monocyte; Cell biology; Cancer research; Chemistry; Immunology; Biology; Biochemistry","score_opus":0.010456057782885853,"score_gpt":0.2301212344916345,"score_spread":0.21966517670874863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1985672380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970493,0.00008513732,0.0012784156,0.000290928,0.00017131363,0.0004687565,0.000025872954,0.000076068296,0.0005542613],"genre_scores_gemma":[0.99647385,0.00007239221,0.00036451008,0.00045919564,0.00003646882,0.000163068,0.00008954516,0.000020670243,0.002320305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979725,0.000437273,0.0005022916,0.00037737156,0.000039693652,0.0006708561],"domain_scores_gemma":[0.9994792,0.000031109837,0.00012068728,0.0002970539,0.000043253374,0.000028692732],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025445645,0.00025713278,0.00037498007,0.00018363395,0.00011145435,0.00001474529,0.00028313213,0.00034118924,0.0006890569],"category_scores_gemma":[0.000037063182,0.00023378652,0.0001077951,0.000099360805,0.0002109888,0.00014582636,0.000051307266,0.00062106503,0.0010708788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004424891,0.00015433884,0.0015346862,0.00001091641,0.000056326353,0.000009188271,0.0006567522,0.00065368385,0.9840152,0.000028368713,0.00052695756,0.00792866],"study_design_scores_gemma":[0.004300201,0.0018393453,0.004605794,0.000040967294,0.00003731308,0.00029603916,0.0001048621,0.0009161697,0.9834792,0.00021057254,0.0039555584,0.00021400406],"about_ca_topic_score_codex":0.00011248232,"about_ca_topic_score_gemma":0.000034581197,"teacher_disagreement_score":0.007714656,"about_ca_system_score_codex":0.00007931504,"about_ca_system_score_gemma":0.000054304208,"threshold_uncertainty_score":0.9997069},"labels":[],"label_agreement":null},{"id":"W1986013893","doi":"10.1016/j.clim.2006.02.003","title":"Towards subtlety: Understanding the role of Toll-like receptor signaling in susceptibility to human infections","year":2006,"lang":"en","type":"review","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Sick Kids Foundation; Canadian Child Health Clinician Scientist Program","keywords":"Innate immune system; Biology; Immunology; Immune system; Genotyping; Immunity; Toll; Toll-like receptor; Acquired immune system; Pattern recognition receptor; Signal transduction; Receptor; Gene; Genetics; Genotype","score_opus":0.09855333787123541,"score_gpt":0.38933768326917473,"score_spread":0.2907843453979393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986013893","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0117494175,0.98334455,0.00016879544,0.00011048249,0.002016905,0.0012577988,0.0000348466,0.000072526134,0.0012446583],"genre_scores_gemma":[0.031246254,0.9667584,0.000032705862,0.00006338198,0.00015044618,0.00019643674,0.0006098152,0.00006953144,0.0008730415],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9924037,0.0034873202,0.0028153355,0.0006411253,0.000057200265,0.00059532747],"domain_scores_gemma":[0.9956984,0.0023079875,0.0008828767,0.000979377,0.0001077936,0.000023543309],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0027625558,0.0004622884,0.0023493469,0.00047688262,0.00030434068,0.000021127073,0.0007484847,0.001763229,0.0005373753],"category_scores_gemma":[0.00087462616,0.00034069928,0.00093097956,0.00063153147,0.0009096733,0.00008032034,0.00038723488,0.0018560842,0.00060096325],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044246332,0.0014740194,0.0012983781,0.001285023,0.0025514872,0.000010124778,0.00061731116,0.000011398502,0.022677409,0.014940969,0.002320381,0.95237106],"study_design_scores_gemma":[0.0006512665,0.00071082945,0.00033845234,0.0016267434,0.0004026555,0.000041066094,0.00040242422,2.9472085e-7,0.0005714543,0.0013559449,0.99351263,0.00038624974],"about_ca_topic_score_codex":0.00043732795,"about_ca_topic_score_gemma":0.00032070023,"teacher_disagreement_score":0.9911922,"about_ca_system_score_codex":0.00042860777,"about_ca_system_score_gemma":0.00046678085,"threshold_uncertainty_score":0.9999045},"labels":[],"label_agreement":null},{"id":"W1986141266","doi":"10.1016/j.dci.2009.12.018","title":"Co-stimulation with TLR7/8 and TLR9 agonists induce down-regulation of innate immune responses in sheep blood mononuclear and B cells","year":2010,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"TLR9; TLR7; Agonist; Biology; Innate immune system; TLR3; Stimulation; Immune system; Peripheral blood mononuclear cell; CpG Oligodeoxynucleotide; Receptor; Immunology; TLR4; Toll-like receptor; Endocrinology; Gene expression; In vitro; DNA methylation; Biochemistry","score_opus":0.01259822582355592,"score_gpt":0.2509423307871513,"score_spread":0.23834410496359537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986141266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976657,0.0009545163,0.000028968287,0.00008091994,0.00015846935,0.00045069755,0.000010059473,0.000033829252,0.0006168559],"genre_scores_gemma":[0.998508,0.00010266879,0.0008586039,0.000020053021,0.0000057635266,0.000028689785,0.00014285145,0.000016460795,0.00031696018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830395,0.00039009532,0.00060075795,0.0003481974,0.00005239052,0.00030461373],"domain_scores_gemma":[0.99909216,0.00029125085,0.00030477004,0.00018354012,0.00011046725,0.00001778681],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038925372,0.00027057464,0.00051336,0.00041507778,0.0002097051,0.000022995038,0.0001377906,0.00032307333,0.00016316003],"category_scores_gemma":[0.000041850744,0.00024538458,0.000026446714,0.00023518498,0.0008110018,0.00030757757,0.000092636976,0.0004921729,0.00006294083],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029292456,0.00013153767,0.010282377,0.000013971768,0.0002169301,0.0000044202484,0.00549212,0.000009839745,0.97762376,0.00076447893,0.000014366288,0.0025169426],"study_design_scores_gemma":[0.0020023303,0.0002469786,0.4651602,0.000029881043,0.000015959906,0.0001230607,0.00056205253,0.000016526355,0.53103215,0.00005916174,0.0005925064,0.00015922468],"about_ca_topic_score_codex":0.00015568743,"about_ca_topic_score_gemma":0.00011503617,"teacher_disagreement_score":0.45487782,"about_ca_system_score_codex":0.000038591985,"about_ca_system_score_gemma":0.00013344355,"threshold_uncertainty_score":0.9999998},"labels":[],"label_agreement":null},{"id":"W1986167289","doi":"10.1371/journal.pone.0023940","title":"Different Toll-Like Receptor Stimuli Have a Profound Impact on Cytokines Required to Break Tolerance and Induce Autoimmunity","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Autoimmunity; Immunology; TLR3; Immune system; Cytokine; Toll-like receptor; TLR7; Biology; Dendritic cell; TLR4; T cell; Acquired immune system; Cell biology; Innate immune system","score_opus":0.07046736077447767,"score_gpt":0.2624176342240883,"score_spread":0.19195027344961063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986167289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99743944,0.00046815208,0.000013856901,0.00027475518,0.00016911628,0.00063515163,0.00002667877,0.00009932963,0.00087352033],"genre_scores_gemma":[0.99625397,0.000071330214,0.0001275028,0.00018497466,0.000034453293,0.000087456385,0.00007517904,0.000023629098,0.003141519],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868673,0.0002846352,0.00031252773,0.00028512804,0.00006571763,0.0003652371],"domain_scores_gemma":[0.9991815,0.00012075053,0.000118231816,0.00043580463,0.00010038853,0.000043286032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019786021,0.00025712946,0.00041923893,0.00014980504,0.00021659058,0.000023502615,0.00019333008,0.0002303685,0.00059059466],"category_scores_gemma":[0.00013759414,0.0001987765,0.000062829546,0.00009187461,0.00011067926,0.00016388191,0.00010935805,0.00030895264,0.0005903531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033839312,0.0012369568,0.0031899482,0.000040738534,0.0004070834,0.000003546842,0.0033297045,7.2228283e-7,0.9849902,0.00007609136,0.000494057,0.002847063],"study_design_scores_gemma":[0.0012270473,0.0015144472,0.20755579,0.00030668947,0.000077298595,0.000015051474,0.00013851038,0.000013136139,0.7882567,0.00006469276,0.00054242724,0.00028818444],"about_ca_topic_score_codex":0.00022402406,"about_ca_topic_score_gemma":0.00002005896,"teacher_disagreement_score":0.20436583,"about_ca_system_score_codex":0.00008481297,"about_ca_system_score_gemma":0.000044213466,"threshold_uncertainty_score":0.81058705},"labels":[],"label_agreement":null},{"id":"W1986230116","doi":"10.1007/978-94-015-9702-9_13","title":"The Therapeutic Potential of Interleukin 10 in Infection and Inflammation","year":2001,"lang":"en","type":"article","venue":"Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Immunology; Inflammation; Medicine; Immune system; Sepsis; Cytokine","score_opus":0.007459929502722145,"score_gpt":0.22977516964588443,"score_spread":0.22231524014316228,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986230116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996461,0.0006895091,0.0008751087,0.00057944667,0.00026814276,0.00026501482,4.4253042e-7,0.000032266533,0.000829097],"genre_scores_gemma":[0.9983803,0.00070608023,0.000009530984,0.000006228161,0.000045466033,0.00003001276,0.000039051807,0.0000074586565,0.00077584817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893636,0.000268111,0.0004710065,0.00011636331,0.000045569235,0.00016258396],"domain_scores_gemma":[0.9993727,0.00013530398,0.00022897938,0.00016239147,0.000094145034,0.0000064888227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006187204,0.00010328098,0.00012706018,0.00018575216,0.00014391249,0.00002849336,0.00007466589,0.00015698477,0.00011947729],"category_scores_gemma":[0.00011910831,0.00007987754,0.00003943052,0.00017892409,0.00011505173,0.000334174,0.000031836673,0.00013928229,0.00011031504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056024495,0.000010978948,0.0039838306,0.000015220159,0.000035696114,0.0000011788801,0.00055249437,0.00016663806,0.73179036,0.0022884165,0.00003959886,0.26055533],"study_design_scores_gemma":[0.0021154576,0.00023751437,0.36652458,0.000094240786,0.000038841867,0.00010200049,0.00029128318,0.0015707834,0.5677015,0.003127719,0.05797594,0.00022010789],"about_ca_topic_score_codex":0.0001112076,"about_ca_topic_score_gemma":0.00021016746,"teacher_disagreement_score":0.36254075,"about_ca_system_score_codex":0.000043974775,"about_ca_system_score_gemma":0.000028611123,"threshold_uncertainty_score":0.32573116},"labels":[],"label_agreement":null},{"id":"W1986661099","doi":"10.1016/j.it.2007.10.002","title":"Innate immune recognition at the epithelial barrier drives adaptive immunity: APCs take the back seat","year":2007,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Howard Hughes Medical Institute","keywords":"Innate immune system; Pattern recognition receptor; Acquired immune system; Biology; Immunology; Innate lymphoid cell; Immune system; Immunity; Receptor; Classical complement pathway; Complement system","score_opus":0.06277489154835084,"score_gpt":0.31582698276616206,"score_spread":0.25305209121781125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1986661099","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018805825,0.9855817,0.000015567533,0.00030881775,0.0029668014,0.0010020947,0.00023412574,0.000099354314,0.007910962],"genre_scores_gemma":[0.0004952723,0.9570879,0.000021883658,0.0001224974,0.00013877526,0.0003702668,0.0036000984,0.00012639367,0.038036946],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99019873,0.005455079,0.002087933,0.00079829566,0.00012359882,0.0013363507],"domain_scores_gemma":[0.9943173,0.0023336452,0.0012520226,0.0018974801,0.00017429455,0.000025236848],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0025304272,0.0011004355,0.0023381829,0.0012918592,0.0010316798,0.00005457205,0.0017217811,0.0022710238,0.006982547],"category_scores_gemma":[0.00028473968,0.0006509595,0.0010907872,0.0014418612,0.002156028,0.00022524758,0.0010048574,0.0036143363,0.0103866225],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008456669,0.00009935101,0.0000018754912,0.00017995808,0.0014839878,0.000022377057,0.0011119598,8.883962e-7,0.0023589495,0.00028000737,0.0010926669,0.9925223],"study_design_scores_gemma":[0.0014554984,0.00036123183,0.0002495171,0.001620119,0.0006565446,0.0008119563,0.00051062723,9.684156e-7,0.0028926912,0.00014543236,0.9905622,0.0007332086],"about_ca_topic_score_codex":0.000441771,"about_ca_topic_score_gemma":0.00041177083,"teacher_disagreement_score":0.9917891,"about_ca_system_score_codex":0.00059655984,"about_ca_system_score_gemma":0.00030055863,"threshold_uncertainty_score":0.99959415},"labels":[],"label_agreement":null},{"id":"W1987058838","doi":"10.1016/j.bbrc.2009.07.061","title":"3′,5′-Cyclic diguanylic acid elicits mucosal immunity against bacterial infection","year":2009,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences; Brock University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Immunity; Mucosal immunity; Microbiology; Biology; Chemistry; Immunology; Immune system","score_opus":0.0508918582036232,"score_gpt":0.34828076391360063,"score_spread":0.29738890570997745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987058838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99125785,0.0016122484,0.000020652491,0.0043042004,0.00008075151,0.0002914089,0.000014136755,0.0001057602,0.0023129685],"genre_scores_gemma":[0.99597996,0.002728277,0.00009160398,0.000117128344,0.000091991285,0.000046593414,0.00064413156,0.000010369792,0.00028992808],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979098,0.0008543668,0.0003369978,0.00027958135,0.00011995515,0.00049931713],"domain_scores_gemma":[0.9980762,0.0004424356,0.00006891621,0.0010801754,0.00025637363,0.000075902615],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061830995,0.00018075203,0.00024227054,0.00018037405,0.0008786078,0.00008089302,0.00063003396,0.00031047838,0.00005836518],"category_scores_gemma":[0.00068972073,0.00015406113,0.00010915421,0.0004996751,0.0009031039,0.00019721617,0.0004063946,0.0010246927,0.0004410494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021780116,0.00044525892,0.000034641853,0.0000086891505,0.000032551838,4.0195286e-7,0.00010601542,3.3303586e-8,0.9610479,0.0030787142,0.0016863282,0.03334167],"study_design_scores_gemma":[0.00071292045,0.00033253187,0.019498296,0.000047575093,0.00001594584,0.0000089112555,0.00004120567,0.000028022441,0.9392814,0.0011257897,0.038703095,0.00020429843],"about_ca_topic_score_codex":0.00013451671,"about_ca_topic_score_gemma":0.0000065969516,"teacher_disagreement_score":0.037016768,"about_ca_system_score_codex":0.000073690135,"about_ca_system_score_gemma":0.00008778897,"threshold_uncertainty_score":0.67576295},"labels":[],"label_agreement":null},{"id":"W1987143582","doi":"10.1016/j.carres.2011.05.018","title":"Synthesis of a dimeric monosaccharide lipid A mimic and its synergistic effect on the immunostimulatory activity of lipopolysaccharide","year":2011,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chemistry; Lipopolysaccharide; Lipid A; TLR4; Monosaccharide; Toll-like receptor; Ligand (biochemistry); Receptor; Immune system; Biochemistry; Glycolipid; Innate immune system; Immunology; Biology","score_opus":0.053809461883153525,"score_gpt":0.2930130521690413,"score_spread":0.23920359028588775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987143582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663866,0.0019050944,0.000005508137,0.00007391377,0.00019008601,0.0005082219,0.000007508491,0.000019466655,0.00065155566],"genre_scores_gemma":[0.99933344,0.00031434826,0.0000020969578,0.0000065585473,0.000014471016,0.00011436461,0.0000022707438,0.000020658646,0.00019176592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968639,0.0019972771,0.00032857942,0.00026967734,0.00012679906,0.00041375507],"domain_scores_gemma":[0.9949414,0.004126222,0.00017226236,0.00052831403,0.00020577652,0.000026014299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022495652,0.0001812377,0.00041161448,0.0003912795,0.0002146084,0.000008544454,0.00036342384,0.00020579486,0.00017695427],"category_scores_gemma":[0.0022077898,0.00012373015,0.00010996413,0.00032919712,0.000516455,0.000097198936,0.000182927,0.0005393001,0.00012487061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016472996,0.000097953605,0.00014343591,0.00010189459,0.00022242863,0.000003792617,0.00056953914,0.0000027412161,0.9903856,0.0017071803,0.000039199815,0.0050789365],"study_design_scores_gemma":[0.00029583854,0.0007247011,0.0026543564,0.000171809,0.000053449075,0.0000043930495,0.000086768276,0.00012876271,0.9956613,0.000073050505,0.00003721772,0.000108319226],"about_ca_topic_score_codex":0.00057286036,"about_ca_topic_score_gemma":0.0000034726788,"teacher_disagreement_score":0.005275736,"about_ca_system_score_codex":0.00004283415,"about_ca_system_score_gemma":0.000121342026,"threshold_uncertainty_score":0.5045569},"labels":[],"label_agreement":null},{"id":"W1987149968","doi":"10.1186/cc5277","title":"Mechanism and effectiveness of polymyxin B-immobilized fiber columns for removing mediators (HMBG-1, 2-arachidonoyl glycerol, anandamide, PAI-1, protein C and IL-6) in septic shock patients","year":2007,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Hemoperfusion; Septic shock; Medicine; Polymyxin B; Polymyxin; Microbiology; Pharmacology; Intensive care medicine; Surgery; Antibiotics; Sepsis; Biology","score_opus":0.0058320489471865074,"score_gpt":0.254372346369081,"score_spread":0.2485402974218945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987149968","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99674606,0.0014364499,0.0003669337,0.000036152804,0.0001495536,0.0010985679,0.000038983875,0.000019757854,0.00010752216],"genre_scores_gemma":[0.9995704,0.0000073015017,0.00014326182,0.000026761696,0.000011195015,0.00008481611,0.00008750344,0.000019124658,0.000049580947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856246,0.0003509885,0.0003851293,0.00029286815,0.000048058235,0.00036048895],"domain_scores_gemma":[0.99813473,0.0014329898,0.000058380818,0.00015236411,0.00018329002,0.000038228445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070957636,0.00016642567,0.00036509155,0.00015505386,0.00011930374,0.000015310561,0.00007098234,0.00031160732,0.000038934686],"category_scores_gemma":[0.0014187767,0.0001599845,0.000060595106,0.00010389948,0.0002402327,0.00012775253,0.00007023248,0.00016967046,0.000005588502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009500912,0.00027984483,0.022500869,0.0033154723,0.00009270909,0.000012990394,0.0028880585,9.796053e-7,0.9240109,0.014751413,0.000018038942,0.022627844],"study_design_scores_gemma":[0.011228527,0.0021127514,0.14566615,0.000762993,0.00013751743,0.000018744791,0.0025182453,0.00004148731,0.83298606,0.0032345178,0.0007568423,0.0005361735],"about_ca_topic_score_codex":0.000108838634,"about_ca_topic_score_gemma":0.000079467754,"teacher_disagreement_score":0.12316529,"about_ca_system_score_codex":0.00006772711,"about_ca_system_score_gemma":0.000047007372,"threshold_uncertainty_score":0.6523978},"labels":[],"label_agreement":null},{"id":"W1987375408","doi":"10.1002/cyto.a.20943","title":"Correlation analysis of intracellular and secreted cytokines via the generalized integrated mean fluorescence intensity","year":2010,"lang":"en","type":"article","venue":"Cytometry Part A","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia; Terry Fox Research Institute; BC Cancer Agency","funders":"National Institute of Allergy and Infectious Diseases; National Institute of Biomedical Imaging and Bioengineering; Hospital for Sick Children; National Institutes of Health; Michael Smith Health Research BC; Canadian Institutes of Health Research; Mitacs; Children's Health Research Institute","keywords":"Cytokine; Immune system; Innate immune system; Flow cytometry; Population; Immunology; Biology; Immunogenicity; Cytometry; Medicine","score_opus":0.009155600181188146,"score_gpt":0.22739419755246998,"score_spread":0.21823859737128184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987375408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946064,0.00045301375,0.004056363,0.00012264546,0.0005054481,0.00015247954,0.000010473742,0.000038139326,0.000055051638],"genre_scores_gemma":[0.99907905,0.00005643232,0.000106352236,0.000039408882,0.000020126172,0.000007397886,0.00036632502,0.0000069763305,0.00031795225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904937,0.00020927255,0.00034398533,0.00018751099,0.00004411569,0.00016573409],"domain_scores_gemma":[0.9990327,0.0001772844,0.0002004578,0.00034333847,0.00023082296,0.000015436348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005826016,0.00013104176,0.00033289593,0.00042614556,0.00015255384,0.000015513522,0.0001492642,0.000226425,0.00042057576],"category_scores_gemma":[0.00030517383,0.00008841726,0.00010418664,0.0012243527,0.00032607556,0.00009636908,0.000059255344,0.00036040656,0.00004177796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003179395,0.00002147867,0.015343393,0.000004920828,0.00064027694,0.0000011237317,0.00053998875,0.000017027438,0.9793039,0.00024559564,0.00018458796,0.0033797594],"study_design_scores_gemma":[0.00059338415,0.00007033924,0.11604162,0.000013025137,0.0007552889,0.000030996387,0.00021997042,0.010244922,0.86505836,0.00004696721,0.006769611,0.00015553451],"about_ca_topic_score_codex":0.00014460557,"about_ca_topic_score_gemma":0.00006703359,"teacher_disagreement_score":0.11424557,"about_ca_system_score_codex":0.0000111695435,"about_ca_system_score_gemma":0.000024879228,"threshold_uncertainty_score":0.46050096},"labels":[],"label_agreement":null},{"id":"W1987410025","doi":"10.1038/ni1297","title":"The Unc93b1 mutation 3d disrupts exogenous antigen presentation and signaling via Toll-like receptors 3, 7 and 9","year":2006,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":710,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"","keywords":"Endoplasmic reticulum; Biology; Antigen presentation; Cell biology; RNA; Cross-presentation; Major histocompatibility complex; Receptor; Endosome; Antigen; Molecular biology; MHC class I; Gene; Intracellular; Genetics; T cell; Immune system","score_opus":0.0029230726170101787,"score_gpt":0.21799836703817496,"score_spread":0.21507529442116477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987410025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9351138,0.061270308,0.00054065726,0.00071190426,0.0016580429,0.0003405365,0.000002891271,0.00007289989,0.000288967],"genre_scores_gemma":[0.99679685,0.0010206655,0.00012561562,0.00008626572,0.000061868224,0.000027205291,0.0002478324,0.00001862629,0.0016150883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985769,0.00041157994,0.00033884254,0.00028010184,0.000044900684,0.00034770966],"domain_scores_gemma":[0.99913424,0.000354544,0.00018621808,0.00021168588,0.00010383405,0.000009494259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036247552,0.00018941506,0.00020454387,0.00012658158,0.00070911495,0.000050843653,0.00013275867,0.0006995227,0.000041435218],"category_scores_gemma":[0.00009657496,0.0001430418,0.00004085001,0.00013534047,0.00036716668,0.00019304977,0.0000745323,0.0005736655,0.000051435833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047615412,0.000034424458,0.0011689884,0.00001030617,0.00018322539,0.00000940971,0.0006201476,0.000012878223,0.93612874,0.0015832043,0.00086255505,0.058909986],"study_design_scores_gemma":[0.0035922378,0.00062972703,0.15194164,0.000052152813,0.00014344715,0.0016092437,0.0013271283,0.00011013189,0.61347777,0.003886337,0.22257487,0.0006553225],"about_ca_topic_score_codex":0.00018839481,"about_ca_topic_score_gemma":0.000065967346,"teacher_disagreement_score":0.32265097,"about_ca_system_score_codex":0.00003702688,"about_ca_system_score_gemma":0.00003644155,"threshold_uncertainty_score":0.58330756},"labels":[],"label_agreement":null},{"id":"W1987553649","doi":"10.1016/j.dci.2012.03.012","title":"Genomic structure, molecular characterization and functional analysis of Pekin duck interleukin-10","year":2012,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; Canadian Liver Foundation","keywords":"Biology; Exon; Gene; Intron; Molecular biology; Alternative splicing; Coding region; Genetics; Homology (biology); RNA splicing; Untranslated region; Sequence analysis; Peptide sequence; Complementary DNA; Recombinant DNA; RNA","score_opus":0.01736844230512051,"score_gpt":0.24327740722226424,"score_spread":0.22590896491714374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987553649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961435,0.0017264077,0.0011698051,0.000030721258,0.00039882597,0.00017286456,0.00003914691,0.000024135727,0.00029460195],"genre_scores_gemma":[0.9965207,0.000035572848,0.000183034,0.000053259624,0.000010456853,0.000016902717,0.0024429983,0.0000092404525,0.00072781317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986936,0.0002940389,0.00046120133,0.00021418178,0.00003884075,0.00029817043],"domain_scores_gemma":[0.99941045,0.00008113821,0.00025950302,0.00013493275,0.000097129894,0.000016824653],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015111925,0.00020552191,0.00048598196,0.00051706034,0.00012640063,0.000009575758,0.00010798573,0.0001821637,0.0024118002],"category_scores_gemma":[0.000019872,0.0001961297,0.000082347164,0.00037909506,0.00028672203,0.00022034948,0.00013351276,0.00016949148,0.00019482689],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049198105,0.00006315632,0.028797574,0.0000046476466,0.002909062,5.3258003e-7,0.0027390595,0.00000442518,0.96211296,0.0014591647,0.000049757276,0.0013676768],"study_design_scores_gemma":[0.00040464837,0.00004147994,0.5540878,0.0000044914045,0.0001451366,0.000036553945,0.00038146478,0.000008031969,0.43977115,0.000008677711,0.004990897,0.00011965478],"about_ca_topic_score_codex":0.000020821195,"about_ca_topic_score_gemma":0.000008601802,"teacher_disagreement_score":0.52529025,"about_ca_system_score_codex":0.000100247315,"about_ca_system_score_gemma":0.000064741995,"threshold_uncertainty_score":0.9985001},"labels":[],"label_agreement":null},{"id":"W1987659249","doi":"10.1097/shk.0b013e31804d40be","title":"INTRAPULMONARY DELIVERY OF ETHYL PYRUVATE ATTENUATES LIPOPOLYSACCHARIDE- AND LIPOTEICHOIC ACID-INDUCED LUNG INFLAMMATION IN VIVO","year":2007,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipoteichoic acid; Lipopolysaccharide; Bronchoalveolar lavage; Inflammation; In vivo; Tumor necrosis factor alpha; Lung; Pharmacology; Nasal administration; Chemistry; Medicine; Immunology; Biology; Staphylococcus aureus; Internal medicine; Bacteria","score_opus":0.00793538976492251,"score_gpt":0.2358842604963723,"score_spread":0.2279488707314498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987659249","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964677,0.0021412703,0.00017966429,0.00016632011,0.00027652225,0.00022554614,0.0000032191238,0.000039712835,0.00050005433],"genre_scores_gemma":[0.99936986,0.00021163355,0.000050890776,0.000042786574,0.000040102943,0.0000053868707,0.000025224499,0.000013508202,0.00024060013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880725,0.00012618958,0.00052063714,0.00020204851,0.000044438548,0.00029944655],"domain_scores_gemma":[0.9993473,0.00018683932,0.00017510694,0.00019722481,0.00007623218,0.000017277564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006861453,0.00015496279,0.00024884706,0.00033397618,0.0000764483,0.000008936081,0.00011718864,0.00030171432,0.00012605815],"category_scores_gemma":[0.00010491989,0.00015050535,0.000049591636,0.00016795717,0.00008222285,0.00025123594,0.00007129857,0.00025564196,0.000046572695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004910762,0.000020544838,0.004017378,0.00003886584,0.00004704046,0.000008221274,0.00068349525,0.0000035803516,0.9572336,0.00031720405,0.00006474682,0.037074227],"study_design_scores_gemma":[0.0007165999,0.00008795357,0.026013602,0.00007799951,0.000020553356,0.000021255053,0.00033805502,0.000067157576,0.97177976,0.00020416446,0.00052289857,0.00014996754],"about_ca_topic_score_codex":0.00031847198,"about_ca_topic_score_gemma":0.00013545078,"teacher_disagreement_score":0.03692426,"about_ca_system_score_codex":0.00004863554,"about_ca_system_score_gemma":0.000049547412,"threshold_uncertainty_score":0.613743},"labels":[],"label_agreement":null},{"id":"W1987882762","doi":"10.1016/j.vetimm.2006.11.013","title":"Systemic innate immune responses following intrapulmonary delivery of CpG oligodeoxynucleotides in sheep","year":2006,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases","keywords":"CpG Oligodeoxynucleotide; Systemic administration; Innate immune system; Immunology; Immune system; CpG site; Biology; Pharmacology; In vivo","score_opus":0.009130744115897477,"score_gpt":0.2242981103636265,"score_spread":0.21516736624772903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987882762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92964953,0.06778806,0.00005267282,0.0001384954,0.0012181925,0.000381389,0.00001671707,0.00010874253,0.00064618327],"genre_scores_gemma":[0.9971412,0.0017445182,0.00010357866,0.000051275405,0.000021213347,0.00012296089,0.00013864633,0.000045923243,0.0006307141],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9953938,0.0017203336,0.0014657603,0.000580364,0.00005626494,0.000783472],"domain_scores_gemma":[0.9982299,0.000536139,0.00045762843,0.00067053305,0.00009139009,0.000014403575],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011372122,0.00046570224,0.0010560432,0.0009739925,0.00027731076,0.000016586224,0.0004616911,0.00080241036,0.00012132123],"category_scores_gemma":[0.00013622492,0.0004713066,0.00023378497,0.0003981778,0.00092200964,0.0004246405,0.0004130052,0.0006884842,0.00012870447],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004748439,0.00022635594,0.009014298,0.00007191626,0.00019421379,0.0005661737,0.00044969475,0.000010474327,0.97738063,0.0021647546,0.000021821672,0.0051512537],"study_design_scores_gemma":[0.005129984,0.0031778286,0.59106064,0.0004321671,0.000120699624,0.0131263,0.0013501499,0.000018090193,0.38089472,0.0014730139,0.002423179,0.0007932622],"about_ca_topic_score_codex":0.0005848202,"about_ca_topic_score_gemma":0.0000087568005,"teacher_disagreement_score":0.5964859,"about_ca_system_score_codex":0.00008345248,"about_ca_system_score_gemma":0.00011014371,"threshold_uncertainty_score":0.99977386},"labels":[],"label_agreement":null},{"id":"W1987883630","doi":"10.1515/bc.2002.138","title":"Anti-Inflammatory Effect of Pre-Elafin in Lipopolysaccharide-Induced Acute Lung Inflammation","year":2002,"lang":"en","type":"article","venue":"Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Elafin; Bronchoalveolar lavage; Inflammation; Lipopolysaccharide; Neutrophil elastase; Elastase; Pharmacology; Medicine; Immunology; Lung; Chemistry; Internal medicine; Biochemistry; Enzyme","score_opus":0.010582894807593857,"score_gpt":0.23752630722500498,"score_spread":0.22694341241741112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1987883630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99707216,0.0011355507,0.000010268425,0.00008268507,0.00014544018,0.0002765638,0.000005933688,0.00008297975,0.0011884137],"genre_scores_gemma":[0.9990584,0.00019558847,0.000008132439,0.00001030115,0.00005030946,0.000051659827,0.00008663746,0.000010154658,0.000528818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848014,0.00025884714,0.0005791871,0.000298191,0.000046583653,0.00033704765],"domain_scores_gemma":[0.9991348,0.0002621229,0.00024052286,0.00030096795,0.000039491715,0.000022091761],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043737603,0.00023308964,0.00045359862,0.00006743084,0.000064075495,0.00000871525,0.00025467863,0.0006914966,0.0012702132],"category_scores_gemma":[0.00033462403,0.00017798878,0.00013790365,0.00012735176,0.00013214738,0.00010748998,0.000086915046,0.00036679866,0.00017499924],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033925328,0.000039606388,0.011130186,0.00007967149,0.00008190733,0.000011665713,0.000111098736,0.0000036889555,0.98457855,0.000031758118,0.00012705891,0.0034655482],"study_design_scores_gemma":[0.001190161,0.00016508158,0.015974328,0.00006314337,0.000028277413,0.000036384932,0.000015463185,0.00007531778,0.9817354,0.000012169278,0.0005115114,0.00019277357],"about_ca_topic_score_codex":0.000013602232,"about_ca_topic_score_gemma":6.1772454e-7,"teacher_disagreement_score":0.0048441417,"about_ca_system_score_codex":0.000062469284,"about_ca_system_score_gemma":0.000016277092,"threshold_uncertainty_score":0.9996428},"labels":[],"label_agreement":null},{"id":"W1988299037","doi":"10.1016/j.immuni.2013.09.004","title":"Processing of Human Toll-like Receptor 7 by Furin-like Proprotein Convertases Is Required for Its Accumulation and Activity in Endosomes","year":2013,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"Medical Research Council; Cancer Research UK; Wellcome Trust","keywords":"Furin; TLR7; Proprotein Convertases; Endosome; Biology; Endocytic cycle; Cell biology; Immune system; Toll-like receptor; Receptor; Proprotein convertase; Endocytosis; Immunology; Innate immune system; Biochemistry; LDL receptor; Enzyme","score_opus":0.03371573637868072,"score_gpt":0.29621276310566536,"score_spread":0.2624970267269846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988299037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996809,0.0015526287,0.0000519952,0.0002357364,0.00008752214,0.0011414732,0.000030035068,0.00003192153,0.00005966193],"genre_scores_gemma":[0.99812585,0.000041498086,0.000039750368,0.000044666027,0.0000061257824,0.0001974139,0.00015759234,0.00001314145,0.0013739631],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99895865,0.0002806822,0.00032514607,0.00017394271,0.00003390118,0.00022769082],"domain_scores_gemma":[0.9992735,0.00013138095,0.00023755067,0.00020687241,0.00013868132,0.000012064697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029955764,0.00014995412,0.00028684706,0.00011451285,0.00023084859,0.000023855759,0.00012664904,0.00021284589,0.0002584733],"category_scores_gemma":[0.00011002184,0.0001382322,0.000042849566,0.000100091915,0.00011136295,0.00060143083,0.00006441404,0.00017968284,0.000034463454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034769918,0.00012694442,0.0006354292,0.00015419899,0.000036181948,8.356925e-8,0.0010360968,3.9345147e-7,0.9838451,0.00002430433,0.0006967149,0.013096846],"study_design_scores_gemma":[0.0016142577,0.00024072775,0.014539104,0.00006339697,0.000020366366,0.0000029712392,0.0002786196,0.000064671076,0.9808738,0.00008724861,0.0020636853,0.00015110536],"about_ca_topic_score_codex":0.00084795366,"about_ca_topic_score_gemma":0.000027664157,"teacher_disagreement_score":0.013903675,"about_ca_system_score_codex":0.000038420734,"about_ca_system_score_gemma":0.000052103365,"threshold_uncertainty_score":0.56369454},"labels":[],"label_agreement":null},{"id":"W1988534109","doi":"10.1165/rcmb.2010-0292oc","title":"Interleukin-1 Receptor–Associated Kinase 3 Gene Associates with Susceptibility to Acute Lung Injury","year":2011,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"National Institute of General Medical Sciences; National Heart, Lung, and Blood Institute","keywords":"Gene; Receptor; Medicine; Kinase; Biology; Internal medicine; Genetics","score_opus":0.006192774632888579,"score_gpt":0.23529047962537358,"score_spread":0.229097704992485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988534109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969044,0.0013717008,0.0010412465,0.00009098508,0.00021650098,0.00014095397,0.000016635602,0.00001739494,0.00020020135],"genre_scores_gemma":[0.9981843,0.000096573305,0.0005791804,0.0010017763,0.000019103074,0.000006012595,0.00001553596,0.000019460427,0.00007803458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979974,0.00087035866,0.0004934135,0.00024508152,0.000041983167,0.00035177224],"domain_scores_gemma":[0.9987022,0.00007071735,0.0006584159,0.00021146765,0.00028065755,0.00007649651],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068066997,0.000213913,0.0005085287,0.00024183665,0.00009803614,0.000009839902,0.00023179308,0.0001648424,0.000105542895],"category_scores_gemma":[0.000114606846,0.00016183246,0.00011908068,0.00022887184,0.0004530922,0.00007331473,0.0000827493,0.00033814498,0.000029747061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019066338,0.00010898394,0.013217243,0.000003802398,0.0004680898,0.00003568837,0.00073280087,3.8912557e-7,0.97336113,0.0000362971,0.0003995984,0.009729357],"study_design_scores_gemma":[0.00097574043,0.008815055,0.00571234,0.000029702334,0.00014372413,0.000046435736,0.00038410453,2.0634869e-7,0.97474176,0.000037158978,0.00888012,0.00023365281],"about_ca_topic_score_codex":0.000059061138,"about_ca_topic_score_gemma":0.000008669101,"teacher_disagreement_score":0.009495704,"about_ca_system_score_codex":0.00008103902,"about_ca_system_score_gemma":0.00014661002,"threshold_uncertainty_score":0.65993357},"labels":[],"label_agreement":null},{"id":"W1988886903","doi":"10.1038/418835a","title":"A block at the toll gate","year":2002,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Toll; Inflammation; Immune system; Block (permutation group theory); Biology; Immunology; Mathematics","score_opus":0.006241095167600366,"score_gpt":0.21221816546986494,"score_spread":0.2059770703022646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988886903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93305737,0.035720896,9.865277e-7,0.008597238,0.000766136,0.00013197352,0.0000045797,0.000055382065,0.021665435],"genre_scores_gemma":[0.890118,0.0001661851,0.0000028271907,0.0011370743,0.000031692296,0.0000058510323,0.000017526141,0.0000050755566,0.10851576],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9995671,0.00009070827,0.0000842775,0.00009168781,0.000019517149,0.00014671864],"domain_scores_gemma":[0.99966407,0.00006684834,0.00003605537,0.00020467014,0.00002408899,0.000004249756],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00009463388,0.00006705306,0.00006925342,0.000024334675,0.00019580197,0.0000068523395,0.0001236398,0.0008107316,0.0029511154],"category_scores_gemma":[0.000053665866,0.000039811628,0.00005069435,0.0000645183,0.000053929572,0.000034838355,0.000044747172,0.0009738572,0.0050347797],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011618403,0.000026787338,0.00010596493,0.0000043930786,0.00007556281,0.0000043328873,0.0005851041,0.000005047366,0.47911605,0.00077699294,0.5107055,0.008478137],"study_design_scores_gemma":[0.0003000288,0.000022586952,0.0011025489,0.0000051725333,0.000010100664,0.00008916936,0.000023499873,0.0000070811257,0.17416063,0.000029262548,0.8241973,0.000052614236],"about_ca_topic_score_codex":0.0000035633107,"about_ca_topic_score_gemma":0.000008019011,"teacher_disagreement_score":0.31349185,"about_ca_system_score_codex":0.00001997407,"about_ca_system_score_gemma":0.000004312382,"threshold_uncertainty_score":0.9979603},"labels":[],"label_agreement":null},{"id":"W1988962841","doi":"10.1016/s0165-2427(00)00231-2","title":"Lymphocyte subsets in porcine tonsillar crypt epithelium","year":2000,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Crypt; Biology; Epithelium; Intestinal epithelium; Cell biology; Genetics; Endocrinology","score_opus":0.009569497876016584,"score_gpt":0.22922279998733663,"score_spread":0.21965330211132006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1988962841","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9487816,0.045995586,0.000011369996,0.00067405385,0.0008216561,0.00031495755,0.000011868744,0.00013709422,0.003251787],"genre_scores_gemma":[0.98476136,0.010543595,0.000093148396,0.00041984484,0.000025606067,0.00008573805,0.00016441775,0.000039888586,0.0038664285],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99658424,0.0011201863,0.0007842627,0.0006071403,0.000036831447,0.00086737017],"domain_scores_gemma":[0.9989003,0.00020587756,0.00014875874,0.0006692701,0.000051472365,0.000024298382],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006355574,0.0004308027,0.0007033328,0.0004605494,0.00032998074,0.000019383597,0.00037123924,0.00079194625,0.0034364513],"category_scores_gemma":[0.00007906857,0.0004196309,0.00010761171,0.00029601756,0.00086021324,0.00032771568,0.00017884381,0.00060678646,0.002340535],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040820516,0.00016729963,0.0013623851,0.00002020545,0.00011200277,0.0004774258,0.0009896291,0.000004903286,0.9046726,0.00053405593,0.00010081404,0.087476596],"study_design_scores_gemma":[0.01222855,0.005352626,0.4568534,0.00014059056,0.0000887547,0.03376831,0.0007492185,0.000026356553,0.15220931,0.0009484931,0.33634558,0.0012888163],"about_ca_topic_score_codex":0.00014465403,"about_ca_topic_score_gemma":0.0000059200993,"teacher_disagreement_score":0.75246334,"about_ca_system_score_codex":0.00008603203,"about_ca_system_score_gemma":0.00009093149,"threshold_uncertainty_score":0.99982554},"labels":[],"label_agreement":null},{"id":"W1989415522","doi":"10.1016/j.intimp.2011.03.024","title":"c-di-GMP protects against intranasal Acinetobacter baumannii infection in mice by chemokine induction and enhanced neutrophil recruitment","year":2011,"lang":"en","type":"article","venue":"International Immunopharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; National Research Council Canada; Institute for Biological Sciences","funders":"National Research Council Canada; Natural Sciences and Engineering Research Council of Canada; University of Ottawa","keywords":"Chemokine; Acinetobacter baumannii; Nasal administration; Microbiology; Medicine; Biology; Immunology; Immune system; Bacteria; Pseudomonas aeruginosa","score_opus":0.02979169027754913,"score_gpt":0.2769532863072462,"score_spread":0.24716159602969706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989415522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934964,0.00077589235,0.00019488971,0.0005467422,0.0025899445,0.0007754934,0.000009444189,0.00007034959,0.0015408198],"genre_scores_gemma":[0.9965386,0.0015885254,0.000030736417,0.0003246159,0.00007735503,0.00040024956,0.0002646535,0.000021400254,0.0007538632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984966,0.00028074378,0.0005028704,0.00035377656,0.00005152855,0.0003144932],"domain_scores_gemma":[0.9994589,0.000053107982,0.00022165135,0.000112392474,0.00013334365,0.000020606589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029041924,0.00023142026,0.00024931313,0.00033881463,0.0001016827,0.000017191694,0.00018867303,0.00031396738,0.00078057783],"category_scores_gemma":[0.000042014646,0.00023356827,0.000054669832,0.0001432801,0.00015909142,0.00039765518,0.00010382412,0.00050142047,0.00014985826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017686982,0.00024852256,0.00047623288,0.000011005176,0.00024913935,0.0000078353205,0.00085199607,0.00000810995,0.97810155,0.00008660649,0.0007821482,0.01740817],"study_design_scores_gemma":[0.0035018919,0.00028321534,0.04257083,0.000031801454,0.000022751394,0.00006168488,0.000046337795,0.000029387515,0.93665874,0.000084288615,0.016490601,0.00021846734],"about_ca_topic_score_codex":0.00041633274,"about_ca_topic_score_gemma":0.000030828647,"teacher_disagreement_score":0.042094596,"about_ca_system_score_codex":0.00021201897,"about_ca_system_score_gemma":0.000044697237,"threshold_uncertainty_score":0.95246375},"labels":[],"label_agreement":null},{"id":"W1989511476","doi":"10.1002/ibd.21738","title":"Toll-like receptor 5 deficiency protects from wasting disease in a T cell transfer colitis model in T cell receptor-β-deficient mice","year":2011,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre; Child and Family Research Institute; BC Children's Hospital; McGill University; University of British Columbia","funders":"Canadian Institutes of Health Research; Michael Smith Health Research BC; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"TLR5; Immunology; Inflammatory bowel disease; Flagellin; Colitis; T cell; Acquired immune system; Toll-like receptor; Receptor; Immune system; Innate immune system; Biology; Medicine; Disease; Internal medicine","score_opus":0.013342112848097292,"score_gpt":0.19982397713883973,"score_spread":0.18648186429074243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989511476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99020404,0.006180496,0.00021681764,0.000037241556,0.0004988663,0.0012688517,0.0003298059,0.00016190874,0.0011020052],"genre_scores_gemma":[0.99795836,0.0002713329,0.00012356305,0.00010557482,0.000031590593,0.0004956473,0.0003144585,0.00005950107,0.00063997234],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9966815,0.0005930745,0.00096252933,0.0007461687,0.00014697785,0.0008697224],"domain_scores_gemma":[0.99887425,0.0001662448,0.00016765977,0.0005511692,0.00009447335,0.00014619081],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00032223805,0.00047171846,0.00043584302,0.00044148887,0.00021137115,0.000037278503,0.00047896607,0.00032193604,0.0009624573],"category_scores_gemma":[0.00013700139,0.00048510337,0.00021547025,0.00027777572,0.00022160067,0.00047663407,0.00011715803,0.00045809112,0.0009037306],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01024045,0.0030078604,0.12894812,0.001024125,0.000054280426,0.0002862511,0.013757399,0.0039208257,0.8353606,0.00048093643,0.0013452948,0.0015738759],"study_design_scores_gemma":[0.011502704,0.00034962085,0.5368053,0.0016433757,0.00022108768,0.000005955195,0.0028104717,0.0039543724,0.43544617,0.0007895305,0.0039066495,0.0025647848],"about_ca_topic_score_codex":0.00030138958,"about_ca_topic_score_gemma":0.000104556515,"teacher_disagreement_score":0.40785715,"about_ca_system_score_codex":0.00022502364,"about_ca_system_score_gemma":0.0005441982,"threshold_uncertainty_score":0.9999508},"labels":[],"label_agreement":null},{"id":"W1989569828","doi":"10.1007/s10719-009-9239-8","title":"Dependence of pathogen molecule-induced Toll-like receptor activation and cell function on Neu1 sialidase","year":2009,"lang":"en","type":"article","venue":"Glycoconjugate Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Sialidase; Chemistry; Neuraminidase; Macrophage; Receptor; Molecular biology; Biology; Biochemistry; In vitro; Enzyme","score_opus":0.009675756818247548,"score_gpt":0.22277270579389083,"score_spread":0.21309694897564327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989569828","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971632,0.00025457455,0.00059843797,0.00042718212,0.000517608,0.00017725339,0.0000036849874,0.000021959508,0.0008360957],"genre_scores_gemma":[0.9989715,0.00016821454,0.000049626058,0.00032358622,0.000066714325,0.000003166037,0.000032434287,0.000008878965,0.0003758639],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886245,0.00028194397,0.00039713984,0.00016739998,0.000068549765,0.00022249347],"domain_scores_gemma":[0.99926794,0.00007787904,0.00035109406,0.00015616317,0.00011522358,0.000031693166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038863445,0.000152169,0.00020346978,0.0001722466,0.00021646825,0.00003353588,0.00010099337,0.00021053146,0.00021530282],"category_scores_gemma":[0.00006786043,0.00013143492,0.00007553129,0.00009359718,0.000033419532,0.00029193377,0.000016392505,0.00038016823,0.00011657941],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018708999,0.00008056562,0.00004593907,0.000006649418,0.000030896954,0.000004313089,0.00020875211,0.000009466227,0.9736346,0.00016339947,0.0006052202,0.023339324],"study_design_scores_gemma":[0.001710933,0.001567024,0.0056149103,0.00006749514,0.000034378758,0.00013313658,0.00014771859,0.00000798718,0.9860837,0.00022674899,0.004264527,0.0001414758],"about_ca_topic_score_codex":0.0000059871536,"about_ca_topic_score_gemma":3.9325343e-7,"teacher_disagreement_score":0.023197848,"about_ca_system_score_codex":0.00004046564,"about_ca_system_score_gemma":0.00007058606,"threshold_uncertainty_score":0.53597605},"labels":[],"label_agreement":null},{"id":"W1989589839","doi":"10.1111/j.1432-1033.2004.04433.x","title":"The structure and biological characteristics of the <i>Spirochaeta aurantia</i> outer membrane glycolipid LGL<sub>B</sub>","year":2004,"lang":"en","type":"article","venue":"European Journal of Biochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; Institute for Biological Sciences","funders":"Natural Sciences and Engineering Research Council of Canada; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Glycolipid; Residue (chemistry); Bacterial outer membrane; Lipopolysaccharide; Chemistry; Chromatography; Lipid A; Lysis; Monosaccharide; Molecular mass; Biochemistry; Rhamnose; Mass spectrometry; Limulus; Biology; Polysaccharide; Escherichia coli","score_opus":0.0050897186564509405,"score_gpt":0.17896403045375658,"score_spread":0.17387431179730564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989589839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967977,0.0017780024,0.000036333473,0.0007090854,0.00046323982,0.00005454003,0.000016496833,0.000005793915,0.00013885689],"genre_scores_gemma":[0.9990186,0.0006347188,0.00001746239,0.000115737515,0.00013637314,1.6050573e-7,0.000008610537,0.0000108607655,0.000057475125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888736,0.000271501,0.0005149563,0.00010346908,0.0000529004,0.00016978628],"domain_scores_gemma":[0.9989849,0.00007414223,0.00057077373,0.00023400078,0.00011557315,0.000020611498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004680734,0.00013751183,0.00020609506,0.000020355248,0.00019650135,0.000021352917,0.00036595794,0.00009434395,0.000013167351],"category_scores_gemma":[0.00020648359,0.00007023531,0.00012768958,0.000063696665,0.00041850776,0.000042392654,0.0001173744,0.0004107878,0.000009907116],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032380637,0.000019138293,0.00018360945,0.00001835894,0.00009068452,0.000018389592,0.00014522833,0.0000013947152,0.99361616,0.000022059832,0.00015420342,0.0054069576],"study_design_scores_gemma":[0.00090560416,0.00010136764,0.014628912,0.000092097354,0.000036940455,0.0011439151,0.000076367556,1.355042e-7,0.97911227,0.000025181384,0.0037945916,0.00008260029],"about_ca_topic_score_codex":4.155314e-7,"about_ca_topic_score_gemma":1.3733307e-7,"teacher_disagreement_score":0.014503882,"about_ca_system_score_codex":0.00001562177,"about_ca_system_score_gemma":0.00005995955,"threshold_uncertainty_score":0.2864113},"labels":[],"label_agreement":null},{"id":"W1989668607","doi":"10.1002/eji.200737130","title":"Differential impact of the transcriptional repressor Gfi1 on mature CD4<sup>+</sup> and CD8<sup>+</sup> T lymphocyte function","year":2007,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"","keywords":"Biology; Repressor; Function (biology); CD8; Molecular biology; Genetics; Transcription factor; Gene; Antigen","score_opus":0.008730071304903811,"score_gpt":0.21901264656315853,"score_spread":0.21028257525825472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989668607","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99158365,0.005047476,0.0008767922,0.00028913867,0.00083430397,0.00017420789,0.000018514336,0.000022953425,0.001152961],"genre_scores_gemma":[0.9980361,0.00047932196,0.00003210816,0.000117488125,0.00019316225,0.0000010030327,0.000030367533,0.000039157596,0.0010713298],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9964207,0.0016927677,0.0010673756,0.0002517221,0.00012134782,0.00044609074],"domain_scores_gemma":[0.9982292,0.0002590782,0.000780271,0.00043966464,0.0002554648,0.000036288606],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012777693,0.00031514015,0.0005065964,0.000373666,0.00027488146,0.00002543664,0.0004639866,0.00025448803,0.0007032966],"category_scores_gemma":[0.00022177742,0.00020580609,0.0004956093,0.00018681702,0.0004671875,0.00021660194,0.00010131356,0.0009424463,0.00010914625],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016276298,0.00022541695,0.0009592212,0.000019068204,0.0014108482,0.00004925631,0.0021237452,0.0010144146,0.95341927,0.0006230927,0.0012131396,0.022666257],"study_design_scores_gemma":[0.0126868235,0.0057961647,0.75995636,0.00041344724,0.00045492806,0.004588906,0.001140433,0.000090734495,0.17616044,0.00016568264,0.038038585,0.0005074627],"about_ca_topic_score_codex":0.000013967809,"about_ca_topic_score_gemma":6.693963e-7,"teacher_disagreement_score":0.7772588,"about_ca_system_score_codex":0.00013141935,"about_ca_system_score_gemma":0.00013918953,"threshold_uncertainty_score":0.8392529},"labels":[],"label_agreement":null},{"id":"W1989800894","doi":"10.1097/ccm.0000000000000407","title":"Muscle-Specific Inhibition of the Classical Nuclear Factor-κB Pathway Is Protective Against Diaphragmatic Weakness in Murine Endotoxemia","year":2014,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Christie (Canada); McGill University; Royal Military College Saint-Jean","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"Medicine; Weakness; Diaphragmatic breathing; Muscle weakness; Diaphragm (acoustics); Pharmacology; Internal medicine; Pathology; Anatomy","score_opus":0.011999563222226353,"score_gpt":0.23923732429114442,"score_spread":0.22723776106891808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1989800894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99099076,0.0009728299,0.00021011688,0.0044423817,0.00055988715,0.00049269607,0.000011998933,0.00003769095,0.0022816618],"genre_scores_gemma":[0.9993449,0.000023402868,0.0000094002935,0.0003747518,0.00009437097,0.000039577983,0.00003345396,0.000018680905,0.00006149371],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982616,0.00059738755,0.000488092,0.00025149347,0.00011061376,0.0002908615],"domain_scores_gemma":[0.99879867,0.00053765054,0.00008303417,0.00035857692,0.00019387425,0.00002820995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029261416,0.00017767289,0.0003866539,0.00012702722,0.00012709422,0.0000059168774,0.00016279868,0.00025861242,0.0004541537],"category_scores_gemma":[0.0013300623,0.00011541402,0.000091199625,0.00021887664,0.00084771577,0.00008409095,0.0000856611,0.0005273427,0.000083212486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015502078,0.000067504996,0.0001491226,0.00022800092,0.000011570121,0.000004923052,0.0053690188,6.970899e-7,0.9622743,0.0077783456,0.0003590224,0.023602441],"study_design_scores_gemma":[0.0034268487,0.00068875076,0.039160233,0.0013066318,0.000035358313,0.000021353715,0.006932633,0.000038422873,0.8994911,0.0011875522,0.047430634,0.00028051535],"about_ca_topic_score_codex":0.000024050481,"about_ca_topic_score_gemma":0.000010293909,"teacher_disagreement_score":0.06278326,"about_ca_system_score_codex":0.00009312834,"about_ca_system_score_gemma":0.000038305152,"threshold_uncertainty_score":0.49726644},"labels":[],"label_agreement":null},{"id":"W1990035602","doi":"10.1016/j.coi.2007.07.001","title":"Alternative mechanisms of immune receptor diversity","year":2007,"lang":"en","type":"review","venue":"Current Opinion in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Moffitt Cancer Center; National Institutes of Health; Cancer Research Institute","keywords":"Biology; Immune system; Immune receptor; Acquired immune system; Receptor; Germline; Innate immune system; Pattern recognition receptor; Immunity; Alternative splicing; Somatic cell; Genetics; Gene; Evolutionary biology; Immunology; Exon","score_opus":0.09307811915011453,"score_gpt":0.36403960040137706,"score_spread":0.2709614812512625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990035602","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000052166997,0.9716447,0.0011913078,0.000010306633,0.025956266,0.0008622906,0.00007517942,0.000050717794,0.000157038],"genre_scores_gemma":[0.00011000098,0.9977539,0.00004317747,0.000002036294,0.000084982334,0.00006908536,0.0016880473,0.000039211005,0.0002095648],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958075,0.0011533987,0.0017843752,0.0005533919,0.00008374038,0.0006175585],"domain_scores_gemma":[0.99724525,0.00054723857,0.0013841387,0.000657435,0.00014932199,0.00001659057],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010527939,0.0005663522,0.002255537,0.0013053349,0.00018549986,0.000007086139,0.00097093044,0.0011635202,0.00072888756],"category_scores_gemma":[0.00021093282,0.0005206967,0.0006794158,0.00057336,0.0004145564,0.00014097345,0.001193,0.0014087493,0.0012049641],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002208552,0.00026773015,0.000004896424,0.00450967,0.00057976396,9.193554e-7,0.00034351734,4.2044147e-7,0.0007908842,0.014742674,0.0004558203,0.97808284],"study_design_scores_gemma":[0.0011163248,0.0002320727,0.00003393931,0.010602616,0.00011345073,0.000044369022,0.00007397353,3.0916488e-7,0.0017886698,0.0006867774,0.9848681,0.00043939945],"about_ca_topic_score_codex":0.00014265475,"about_ca_topic_score_gemma":0.0000015062237,"teacher_disagreement_score":0.98441225,"about_ca_system_score_codex":0.0002985923,"about_ca_system_score_gemma":0.0002645006,"threshold_uncertainty_score":0.99972445},"labels":[],"label_agreement":null},{"id":"W1990113015","doi":"10.1038/sj.onc.1210905","title":"Obstacles to effective Toll-like receptor agonist therapy for hematologic malignancies","year":2008,"lang":"en","type":"review","venue":"Oncogene","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; McMaster University; Women's College Hospital; Sunnybrook Health Science Centre","funders":"National Cancer Institute; Canadian Institutes of Health Research; Ontario Institute for Cancer Research","keywords":"Biology; Agonist; Toll-like receptor; Immunology; Cancer research; Receptor; Toll; Genetics; Innate immune system","score_opus":0.03659042382537198,"score_gpt":0.314420928491998,"score_spread":0.277830504666626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990113015","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008845303,0.9930884,0.00014206112,0.000058441394,0.0015913197,0.0036766916,0.00016582017,0.000116674404,0.0002760611],"genre_scores_gemma":[0.00002976179,0.9893931,0.000253429,0.00014904933,0.000115526535,0.0024139085,0.0013100574,0.00007262794,0.006262507],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976785,0.0005439985,0.00066380086,0.0005462401,0.00004510162,0.00052236044],"domain_scores_gemma":[0.99820393,0.00075974996,0.00038043817,0.00049659336,0.00012753665,0.000031755364],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025444583,0.0005644026,0.00186291,0.00024052337,0.0003918576,0.000025923868,0.00040930492,0.00085080176,0.00021049954],"category_scores_gemma":[0.00017085555,0.00042063466,0.0007810745,0.00023348616,0.00013475213,0.00006156433,0.00008472383,0.0002509275,0.0025639944],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021959891,0.000084431726,5.707884e-7,0.0010635585,0.00055372814,0.000008043594,0.00017741074,2.0366909e-7,0.020122726,0.00011691839,0.029061787,0.94859105],"study_design_scores_gemma":[0.0006371832,0.0005810569,0.0000018938194,0.0016104985,0.00012551245,0.0003439752,0.000028038603,3.1714052e-8,0.032107294,0.000011514355,0.9640866,0.0004664041],"about_ca_topic_score_codex":0.000013099404,"about_ca_topic_score_gemma":0.000003809714,"teacher_disagreement_score":0.94812465,"about_ca_system_score_codex":0.00018790996,"about_ca_system_score_gemma":0.00031791258,"threshold_uncertainty_score":0.9998245},"labels":[],"label_agreement":null},{"id":"W1990131619","doi":"10.1016/j.rvsc.2013.06.025","title":"Characterization of responses initiated by different Toll-like receptor 2 ligands in chicken spleen cells","year":2013,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"TLR2; Cytokine; Toll-like receptor; Splenocyte; Receptor; Biology; Cell biology; Stimulation; Peptidoglycan; TLR4; Immune system; Immunology; Chemistry; Signal transduction; Gene; Innate immune system; Biochemistry; Endocrinology","score_opus":0.07285542805100048,"score_gpt":0.34565712380813834,"score_spread":0.27280169575713786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990131619","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985255,0.00013616978,0.0000060797875,0.00033752498,0.00024235576,0.00048379155,0.00001661507,0.000014811233,0.00023716134],"genre_scores_gemma":[0.9983348,0.000317262,0.0000128441925,0.00001981622,0.000007029908,0.000068180736,0.00007974281,0.000007707921,0.0011526111],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977426,0.00076507963,0.00041374785,0.00032209433,0.00018219122,0.0005743201],"domain_scores_gemma":[0.99910074,0.0003057372,0.0000853156,0.00030546825,0.00016984697,0.00003287314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021978188,0.00011522065,0.0002109344,0.0011949883,0.0001481601,0.000044183813,0.0005298004,0.0001351148,0.00039252028],"category_scores_gemma":[0.00021866651,0.00009951895,0.000025107975,0.0013472444,0.0008010336,0.0006766185,0.0002709806,0.00036156076,0.0002700492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005449782,0.00013813133,0.0010952557,0.00002306741,0.000003610509,0.000004981835,0.00057578,4.6780815e-7,0.9951272,0.000034540386,0.00014532567,0.0023066397],"study_design_scores_gemma":[0.0005090052,0.00095669675,0.16168769,0.00011862036,5.115703e-7,0.000011474076,0.00015561648,0.000056113953,0.8338276,0.000021586558,0.0025586158,0.00009647887],"about_ca_topic_score_codex":0.00022579555,"about_ca_topic_score_gemma":0.0000022844274,"teacher_disagreement_score":0.16129963,"about_ca_system_score_codex":0.0001285017,"about_ca_system_score_gemma":0.0002414444,"threshold_uncertainty_score":0.42978218},"labels":[],"label_agreement":null},{"id":"W1990485538","doi":"10.1016/j.vaccine.2009.01.117","title":"CpG oligonucleotide, host defense peptide and polyphosphazene act synergistically, inducing long-lasting, balanced immune responses in cattle","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Canadian Institutes of Health Research; Krembil Foundation; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Immune system; Immunogenicity; Antigen; Biology; Immunopotentiator; Secretion; Immunology; Innate immune system; Biochemistry","score_opus":0.008020865914375864,"score_gpt":0.23634245174234075,"score_spread":0.22832158582796488,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990485538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99209666,0.0052253744,0.00010620669,0.00113267,0.00023645193,0.0002205202,0.0000063065772,0.00009740428,0.00087837904],"genre_scores_gemma":[0.996287,0.00040074144,0.00012837253,0.00024531854,0.00003961607,0.000012734521,0.000054879216,0.000021805847,0.002809572],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9982601,0.00025774815,0.0005672974,0.0003587375,0.000044711607,0.0005113987],"domain_scores_gemma":[0.99896115,0.0003955766,0.00016902099,0.00037000736,0.00006720441,0.000037048834],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053636567,0.00025905357,0.000431139,0.00029265968,0.00017893648,0.00003254091,0.00017616493,0.00024564037,0.0003273429],"category_scores_gemma":[0.00094047585,0.0002381317,0.0000620429,0.0002875923,0.000034641795,0.00018595952,0.0000818647,0.0003910459,0.00021881577],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029644778,0.00012646859,0.017424455,0.00001877882,0.000055378743,0.00005595168,0.0003668054,0.000019813253,0.96894604,0.00070703495,0.0007298147,0.008584958],"study_design_scores_gemma":[0.0023351621,0.0003518015,0.77414393,0.00015425544,0.00002735108,0.00015134765,0.00006812683,0.000018414214,0.22026311,0.00006195579,0.0021792161,0.000245359],"about_ca_topic_score_codex":0.00027194986,"about_ca_topic_score_gemma":0.00007423601,"teacher_disagreement_score":0.75671947,"about_ca_system_score_codex":0.000060925395,"about_ca_system_score_gemma":0.00007693184,"threshold_uncertainty_score":0.9710729},"labels":[],"label_agreement":null},{"id":"W1990616799","doi":"10.1016/s0198-8859(01)00221-x","title":"Identification of four novel dinucleotide repeat polymorphisms in the IL-2 and IL-2β receptor genes","year":2001,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital","funders":"","keywords":"Allele; Gene; Genetics; Biology; Rheumatoid arthritis; Receptor; Polymorphism (computer science); Immunology","score_opus":0.021181543166515448,"score_gpt":0.24346386756997426,"score_spread":0.22228232440345883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990616799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99394816,0.004116296,0.00011338938,0.00076422095,0.00035042732,0.00026110015,0.000012509739,0.000032199732,0.00040170352],"genre_scores_gemma":[0.996617,0.0009767519,0.000024002476,0.00007779887,0.000027700415,0.000039477032,0.000089461944,0.000014794018,0.002133015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984098,0.0003842993,0.000617895,0.0002578741,0.000038264126,0.0002918443],"domain_scores_gemma":[0.9989867,0.0001651776,0.00029450993,0.00048167902,0.00006573856,0.0000061819237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067965087,0.00015986897,0.00027084028,0.00026147795,0.00023340511,0.00001759244,0.00032780395,0.00025262413,0.00027310822],"category_scores_gemma":[0.00010432665,0.00012946418,0.00006619993,0.00018368493,0.00043937142,0.00015252091,0.00008558667,0.00025773703,0.00017440801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023683683,0.00009639333,0.0020954385,0.0000058533724,0.00007705014,0.0000032973164,0.0012582373,0.0000012575276,0.98336685,0.0057661105,0.0002426966,0.0068500065],"study_design_scores_gemma":[0.0022378943,0.000378778,0.3563328,0.000042916374,0.00004853315,0.0005456154,0.0012150985,0.00000607172,0.57750064,0.0006590109,0.060763557,0.00026910866],"about_ca_topic_score_codex":0.00020788691,"about_ca_topic_score_gemma":0.000056404908,"teacher_disagreement_score":0.4058662,"about_ca_system_score_codex":0.000031742547,"about_ca_system_score_gemma":0.000025369607,"threshold_uncertainty_score":0.5279396},"labels":[],"label_agreement":null},{"id":"W1990834285","doi":"10.1182/blood-2003-02-0660","title":"Protection from endotoxemia by adenoviral-mediated gene transfer of human bactericidal/permeability-increasing protein","year":2003,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Lipopolysaccharide; In vivo; Tumor necrosis factor alpha; Proinflammatory cytokine; Cytokine; Genetic enhancement; Transgene; Biology; Sepsis; Immunology; Pharmacology; Inflammation; Gene; Biochemistry","score_opus":0.008647960250619499,"score_gpt":0.19936721974511476,"score_spread":0.19071925949449525,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990834285","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99760973,0.0008100354,0.00023951472,0.000032154472,0.000075003765,0.00076918857,0.000037116537,0.00007427285,0.00035300464],"genre_scores_gemma":[0.99913824,0.000010780177,0.00006593308,0.000013778208,0.000015268253,0.00011222193,0.0003569122,0.000020490015,0.00026639976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982438,0.0007898631,0.00042619917,0.00025101198,0.000044628283,0.00024451714],"domain_scores_gemma":[0.999499,0.00006339586,0.00009111833,0.00026896506,0.00006179679,0.00001569027],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003775099,0.00016610487,0.00026818473,0.000078337536,0.000141706,0.000010308253,0.0001068344,0.0002930005,0.00061315607],"category_scores_gemma":[0.00019002904,0.00015734014,0.00008700577,0.00012994595,0.00011053829,0.00012528378,0.000011567012,0.00023467485,0.0000969664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022890238,0.00036028758,0.00079940393,0.000021579828,0.00013827729,0.0000013319406,0.00031593136,1.5949443e-7,0.9976884,0.000056724195,0.000015692822,0.00037328375],"study_design_scores_gemma":[0.0027811707,0.00030769693,0.004686312,0.00003888383,0.00006939482,0.000020790834,0.000056835237,4.060957e-7,0.9893927,0.00006650846,0.0024193798,0.00015992192],"about_ca_topic_score_codex":0.000550601,"about_ca_topic_score_gemma":0.00000904618,"teacher_disagreement_score":0.008295726,"about_ca_system_score_codex":0.00002594577,"about_ca_system_score_gemma":0.000054474218,"threshold_uncertainty_score":0.67136294},"labels":[],"label_agreement":null},{"id":"W1990944646","doi":"10.1016/s0165-2427(00)00164-1","title":"Cytokine mRNA expression in leukocytes of efferent lymph from stimulated lymph nodes in pigs","year":2000,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cytokine; Lipopolysaccharide; Tumor necrosis factor alpha; Biology; Lymph; Interferon gamma; Immunology; Interleukin; Molecular biology; Messenger RNA; Medicine; Pathology; Biochemistry","score_opus":0.012050882732960648,"score_gpt":0.2386807200460106,"score_spread":0.22662983731304995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1990944646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9753521,0.023331631,0.0000144677115,0.00010881845,0.00044317113,0.0002703667,0.000033751578,0.000061447005,0.0003842115],"genre_scores_gemma":[0.9941756,0.0048284577,0.00011826523,0.000067971254,0.000012586158,0.000068358575,0.00033108259,0.000030553805,0.00036713312],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9962925,0.0014194305,0.0010549453,0.0005635428,0.000042461703,0.00062717294],"domain_scores_gemma":[0.99865395,0.0004718068,0.00023558064,0.00057591946,0.00004597479,0.000016759173],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004385302,0.0004065747,0.0009113793,0.00057839445,0.00013065318,0.000010360525,0.00038538018,0.00085225736,0.0015453959],"category_scores_gemma":[0.00010010477,0.0003854695,0.000096251046,0.00027978167,0.00069309905,0.00028031666,0.00023125994,0.00048696238,0.00021939918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007969091,0.00033876166,0.026571281,0.000025391946,0.000081591184,0.0001854651,0.0012337677,0.00003692586,0.9306127,0.000041171297,0.000006727923,0.03289714],"study_design_scores_gemma":[0.00669348,0.0008279355,0.7465482,0.0002523538,0.000023301513,0.0006962608,0.00025907726,0.00003350558,0.24308495,0.00028607887,0.0009678729,0.0003269869],"about_ca_topic_score_codex":0.00059936015,"about_ca_topic_score_gemma":0.0000070553037,"teacher_disagreement_score":0.7199769,"about_ca_system_score_codex":0.00009634926,"about_ca_system_score_gemma":0.000074545744,"threshold_uncertainty_score":0.99985975},"labels":[],"label_agreement":null},{"id":"W1991338336","doi":"10.1038/cddis.2013.161","title":"A critical role of toll-like receptor 4 (TLR4) and its’ in vivo ligands in basal radio-resistance","year":2013,"lang":"en","type":"article","venue":"Cell Death and Disease","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Atomic Energy (Canada)","funders":"National Natural Science Foundation of China","keywords":"Cell biology; Toll-like receptor; In vivo; Basal (medicine); TLR4; Receptor; Toll; Biology; Signal transduction; Chemistry; Immunology; Innate immune system; Biochemistry; Genetics; Endocrinology","score_opus":0.004343780641449299,"score_gpt":0.2053887655914067,"score_spread":0.2010449849499574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991338336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9729766,0.025917554,0.0000034916154,0.00023436363,0.00008018928,0.00017290532,0.00001706006,0.00000840057,0.0005894394],"genre_scores_gemma":[0.99779457,0.0005159679,0.000015189416,0.000087681714,0.000010036252,0.000035035842,0.000017957851,0.000006146039,0.0015174435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993169,0.00007945709,0.0002112048,0.00016857639,0.000021048563,0.00020285443],"domain_scores_gemma":[0.9996196,0.00014707935,0.000029436467,0.00010468105,0.000030599844,0.00006861075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009632204,0.00009836081,0.00017003683,0.00009993017,0.00003909706,0.000012449903,0.000052710657,0.00009855214,0.0003285173],"category_scores_gemma":[0.00020454085,0.00009034959,0.000026262378,0.000060998016,0.000075505726,0.0001543434,0.00003193784,0.000093096074,0.000043393324],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013433357,0.00020401257,0.02892133,0.0001743218,0.000009379046,0.000011155191,0.00062009087,0.000001057523,0.96493995,0.0015445745,0.0016031227,0.00062764756],"study_design_scores_gemma":[0.0051953946,0.00020054048,0.27193558,0.00023189998,0.00005128985,0.000005434773,0.0009463602,0.00026817826,0.70402604,0.0026919842,0.013984379,0.0004629222],"about_ca_topic_score_codex":0.000039608884,"about_ca_topic_score_gemma":0.0000074367504,"teacher_disagreement_score":0.26091394,"about_ca_system_score_codex":0.000011563445,"about_ca_system_score_gemma":0.000059500922,"threshold_uncertainty_score":0.36843494},"labels":[],"label_agreement":null},{"id":"W1991399380","doi":"10.1111/j.1365-2567.2008.02840.x","title":"CD14 contributes to pulmonary inflammation and mortality during murine tuberculosis","year":2008,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"CD14; Inflammation; Tuberculosis; Lung; Biology; Immunology; Mycobacterium tuberculosis; Microbiology; Innate immune system; Virulence; Medicine; Pathology; Immune system; Internal medicine; Gene","score_opus":0.009592493121685588,"score_gpt":0.22636863223736883,"score_spread":0.21677613911568325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991399380","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921528,0.005148705,0.000074333315,0.00095485867,0.00050218526,0.00032498842,0.0000066246216,0.00012902047,0.00070648105],"genre_scores_gemma":[0.99759376,0.00079523283,0.000022160208,0.00007135368,0.000041886535,0.00007218188,0.00009675829,0.000015613776,0.0012910706],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986155,0.00024793477,0.0004207042,0.0002968923,0.000029924195,0.00038902738],"domain_scores_gemma":[0.99931794,0.00011413823,0.00009972544,0.0003484027,0.00010150109,0.000018291168],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020885632,0.00019324187,0.00032869598,0.00026274208,0.00040962224,0.000010127191,0.00015037192,0.00030307492,0.00019088533],"category_scores_gemma":[0.00018971886,0.0001890671,0.00006142909,0.00018858821,0.00027789592,0.00019203043,0.00017687307,0.000241553,0.0006766272],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004706973,0.000037588197,0.019449323,0.000015578273,0.00030805464,0.00003046177,0.00037856522,0.0000039212305,0.9752904,0.0009582044,0.00011953452,0.0029376596],"study_design_scores_gemma":[0.0006524493,0.00006494768,0.49885568,0.000015621481,0.000022074515,0.00042612696,0.000059975137,0.0000029014334,0.49168438,0.00011288713,0.007976013,0.00012694403],"about_ca_topic_score_codex":0.00018569519,"about_ca_topic_score_gemma":0.000016640595,"teacher_disagreement_score":0.48360604,"about_ca_system_score_codex":0.00006300262,"about_ca_system_score_gemma":0.000038493647,"threshold_uncertainty_score":0.86968994},"labels":[],"label_agreement":null},{"id":"W1991722411","doi":"10.1016/j.jim.2011.01.009","title":"Variables to be controlled in the assessment of blood innate immune responses to Toll-like receptor stimulation","year":2011,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Canadian Institutes of Health Research; AllerGen; Women and Children's Health Research Institute; Burroughs Wellcome Fund; Michael Smith Health Research BC; Child and Family Research Institute; Wellcome Trust","keywords":"Innate immune system; Toll-like receptor; Toll; Immunology; Immune system; Biology; Procurement; Sample (material); Computational biology; Business; Chemistry; Marketing","score_opus":0.06521879697112117,"score_gpt":0.3760624896913478,"score_spread":0.31084369272022666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991722411","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9760176,0.0025214276,0.017805802,0.00141968,0.0008201763,0.00068038504,0.0000043068476,0.000013386542,0.00071724155],"genre_scores_gemma":[0.8586823,0.00021381497,0.14029656,0.0004195934,0.000021917387,0.000043348668,0.000004277148,0.000010908238,0.0003073279],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9910184,0.0067575034,0.001607069,0.00017596078,0.00011754971,0.00032351137],"domain_scores_gemma":[0.9954463,0.0029671937,0.00081737275,0.00036634522,0.00037752176,0.000025234373],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.010546651,0.00021369243,0.00093388295,0.0005544401,0.00011001608,0.000019672723,0.0006593718,0.00031278335,0.0006093202],"category_scores_gemma":[0.004302762,0.00012414614,0.00026228285,0.0005104099,0.00011544134,0.00017194462,0.00013374786,0.00062153337,0.000016742044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012887291,0.000526707,0.000562975,0.0000068934314,0.00044168206,0.000011953684,0.0020761236,0.000047078207,0.9644609,0.0017429447,0.00009790034,0.017137546],"study_design_scores_gemma":[0.010525767,0.0077554365,0.31214753,0.0001952224,0.00032261162,0.0002293271,0.0022053323,0.000011697659,0.65124446,0.00090437516,0.014146681,0.0003115339],"about_ca_topic_score_codex":0.000034602504,"about_ca_topic_score_gemma":0.0000011714853,"teacher_disagreement_score":0.31321642,"about_ca_system_score_codex":0.000056198412,"about_ca_system_score_gemma":0.00015067011,"threshold_uncertainty_score":0.66716284},"labels":[],"label_agreement":null},{"id":"W1991808732","doi":"10.1016/j.molimm.2009.04.022","title":"A function for AAMP in Nod2-mediated NF-κB activation","year":2009,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Agence des Aires Marines Protégées; Deutsche Forschungsgemeinschaft; Federation of European Biochemical Societies","keywords":"NOD2; HEK 293 cells; Biology; Innate immune system; Cell biology; Cell culture; Cytosol; Function (biology); Molecular biology; Biochemistry; Receptor; Genetics; Enzyme","score_opus":0.005456800463870177,"score_gpt":0.21813551377776905,"score_spread":0.21267871331389887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1991808732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.978448,0.0019923209,0.015453002,0.0020751008,0.00051995117,0.00062153593,0.000003884757,0.00011414376,0.00077207026],"genre_scores_gemma":[0.9977353,0.000045659075,0.00009122874,0.0008140749,0.00001493669,0.000091325586,0.0006455728,0.000016201497,0.0005456922],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865466,0.00025248373,0.00037376946,0.00028220136,0.000027850583,0.0004090583],"domain_scores_gemma":[0.999347,0.00012930547,0.00013594182,0.00028850115,0.00009084809,0.000008433362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027294495,0.0001799758,0.0002616739,0.0003496673,0.00010495066,0.000011808089,0.00015601041,0.00046623786,0.00012497063],"category_scores_gemma":[0.00030809725,0.00018475027,0.00010076987,0.00025446847,0.000070803915,0.00015056873,0.000024121562,0.00027151528,0.0003429882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016107731,0.00010713642,0.000049874507,0.0000045957154,0.00008788651,0.0000036224437,0.0001550354,0.000019751606,0.9726302,0.0037335432,0.00037866182,0.0212189],"study_design_scores_gemma":[0.0033617541,0.0009132358,0.018269962,0.000027560794,0.000024523657,0.000026967024,0.000098327226,0.000035344514,0.92307,0.0019323934,0.052011628,0.0002282651],"about_ca_topic_score_codex":0.000031743628,"about_ca_topic_score_gemma":0.0000052080863,"teacher_disagreement_score":0.051632967,"about_ca_system_score_codex":0.00008804659,"about_ca_system_score_gemma":0.0000667333,"threshold_uncertainty_score":0.7533897},"labels":[],"label_agreement":null},{"id":"W1992373328","doi":"10.1189/jlb.0610357","title":"TLR engagement prior to virus infection influences MHC-I antigen presentation in an epitope-dependent manner as a result of nitric oxide release","year":2010,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Regional Cancer Foundation; University of Ottawa; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; TLR3; Epitope; TLR2; Innate immune system; Antigen presentation; Antigen; Immunology; TLR4; Acquired immune system; Cross-presentation; Toll-like receptor; Immune system; Major histocompatibility complex; MHC class I; T cell","score_opus":0.01852108292255315,"score_gpt":0.31808560872958214,"score_spread":0.29956452580702897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992373328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976545,0.0008619753,0.00010090665,0.00023960132,0.00075763266,0.00028449303,0.000003816923,0.000011991159,0.0000851068],"genre_scores_gemma":[0.9983067,0.0010615936,0.00016671671,0.00016913838,0.00009104668,0.000010801769,0.000020402025,0.000010210485,0.00016342162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997627,0.0009056963,0.0009606399,0.00018631876,0.00006592141,0.00025438404],"domain_scores_gemma":[0.9985022,0.00020173332,0.00072973344,0.00021978127,0.00030453101,0.00004202393],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014561239,0.00015074675,0.00036050746,0.0007569393,0.000095335985,0.0000145542135,0.00024063048,0.00032490658,0.00018697434],"category_scores_gemma":[0.0007978744,0.00012218617,0.000095992116,0.00024129337,0.0001034384,0.00041086823,0.00006859309,0.00062842976,0.00011201799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024537274,0.00017175813,0.03043146,0.000010886461,0.00007818298,0.00001593207,0.0005613557,0.00017642287,0.9538783,0.0001411969,0.00018420035,0.011896588],"study_design_scores_gemma":[0.0014144812,0.00091659004,0.31786183,0.000029277213,0.000026311833,0.00012889819,0.00014191447,0.0000051283087,0.66237545,0.000118617325,0.016872417,0.00010906323],"about_ca_topic_score_codex":0.0011486124,"about_ca_topic_score_gemma":0.0003479607,"teacher_disagreement_score":0.2915028,"about_ca_system_score_codex":0.00007263124,"about_ca_system_score_gemma":0.0002065416,"threshold_uncertainty_score":0.49826077},"labels":[],"label_agreement":null},{"id":"W1992542859","doi":"10.1038/nrmicro2745","title":"Modulating immunity as a therapy for bacterial infections","year":2012,"lang":"en","type":"review","venue":"Nature Reviews Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":538,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McGill University; University of British Columbia","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Innate immune system; Antimicrobial; Biology; Immunity; Antibiotic resistance; Antibiotics; Immune system; Immunology; Antimicrobial peptides; Pattern recognition receptor; Microbiology","score_opus":0.04464169390145939,"score_gpt":0.3521310262793412,"score_spread":0.3074893323778818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992542859","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012474964,0.9889772,0.000044652938,0.000031098953,0.005438055,0.004727672,0.00018890962,0.000113829374,0.00035386631],"genre_scores_gemma":[0.00003876952,0.98581654,0.00014551042,0.00015538382,0.00064034044,0.0012061018,0.010281662,0.00009995635,0.0016157221],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9939774,0.0029008223,0.0016113705,0.0006202016,0.00001661581,0.0008735584],"domain_scores_gemma":[0.9965093,0.00096184167,0.0014093607,0.00092586566,0.00015836638,0.000035245914],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0017745361,0.00091353134,0.003603366,0.00039978657,0.00049765303,0.000031962507,0.0006500642,0.004803373,0.001313585],"category_scores_gemma":[0.0005433834,0.00064896443,0.0017760625,0.0003532934,0.00020030022,0.00015681998,0.00018090977,0.0026282184,0.003143772],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008725897,0.00014390473,7.437689e-7,0.0034288692,0.00059816847,4.0900832e-7,0.000059513633,1.864762e-8,0.030521154,0.0003910198,0.003849254,0.9609197],"study_design_scores_gemma":[0.00074038823,0.00029067547,0.0000012404599,0.0029635371,0.00084091414,0.0008923438,0.000003881092,2.2187095e-8,0.00086171855,0.000028060664,0.9927561,0.00062111596],"about_ca_topic_score_codex":0.000019966092,"about_ca_topic_score_gemma":0.0000068694485,"teacher_disagreement_score":0.98890686,"about_ca_system_score_codex":0.00018916318,"about_ca_system_score_gemma":0.0003629036,"threshold_uncertainty_score":0.9996728},"labels":[],"label_agreement":null},{"id":"W1992645970","doi":"10.1016/j.molimm.2008.09.024","title":"Characterization of bovine Toll-like receptor 8: Ligand specificity, signaling essential sites and dimerization","year":2008,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Ectodomain; Biology; Transmembrane domain; Receptor; Transmembrane protein; Mutant; Transfection; Glycosylation; Cell biology; Signal transduction; Mutagenesis; Molecular biology; Biochemistry; Gene","score_opus":0.006986437595430114,"score_gpt":0.20125700760796078,"score_spread":0.19427057001253067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992645970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923231,0.0024821411,0.004240907,0.0001646458,0.0004280258,0.00020869159,0.000010174033,0.000050736602,0.00009155338],"genre_scores_gemma":[0.99746597,0.0008864573,0.00010375817,0.000058948102,0.000021984188,0.0000114389895,0.00092173344,0.000021355268,0.00050835067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987746,0.000276494,0.0004204472,0.00025031785,0.000041961743,0.00023620644],"domain_scores_gemma":[0.99935454,0.000047812893,0.00024054472,0.00023219982,0.00011396113,0.000010948093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013487246,0.00017104456,0.00031120674,0.0002021842,0.00018219359,0.000008746178,0.00012429584,0.0002853686,0.00020924598],"category_scores_gemma":[0.00006389669,0.00017615827,0.000065505556,0.00016860232,0.0003358918,0.00014210082,0.00009472178,0.00016358166,0.000098974815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048976426,0.00006658433,0.0007116711,0.000014991751,0.00016912722,0.000009513922,0.00050821103,0.0000024566586,0.99636227,0.0004905908,0.000029671082,0.0011451459],"study_design_scores_gemma":[0.0008306018,0.0002664081,0.008968912,0.000021622225,0.000032098502,0.00016287864,0.00004622522,0.000008695968,0.9854365,0.000023089593,0.004040515,0.00016246003],"about_ca_topic_score_codex":0.000020247722,"about_ca_topic_score_gemma":9.3231745e-7,"teacher_disagreement_score":0.010925779,"about_ca_system_score_codex":0.000017167335,"about_ca_system_score_gemma":0.00003937767,"threshold_uncertainty_score":0.71835256},"labels":[],"label_agreement":null},{"id":"W1992867844","doi":"10.1016/j.humimm.2007.08.205","title":"182-P: A rapid automated method for the sequential isolation of CD19, CD3 and CD33 cells from one tube of whole blood","year":2007,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Terry Fox Research Institute; Stemcell Technologies","funders":"","keywords":"CD19; Isolation (microbiology); CD33; Tube (container); CD3; Biology; Chromatography; Immunology; Chemistry; Materials science; Peripheral blood; Antigen; Cell biology; Bioinformatics","score_opus":0.018154664253322884,"score_gpt":0.279294901087808,"score_spread":0.2611402368344851,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1992867844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97366923,0.0070848404,0.017870922,0.00012979869,0.0004383234,0.00052399794,0.00005403361,0.00008780549,0.0001410213],"genre_scores_gemma":[0.9964183,0.00015388167,0.0025896872,0.0000363618,0.000036013193,0.00002290977,0.0002950558,0.000020254392,0.0004275579],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983866,0.00037472157,0.0006763801,0.00022652249,0.00003457731,0.0003011579],"domain_scores_gemma":[0.99805343,0.0009489801,0.00043367647,0.00037122602,0.00018449912,0.000008169851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095557823,0.00016321315,0.00042133007,0.00019221738,0.00023954506,0.000007719818,0.000220196,0.00040043017,0.00030238324],"category_scores_gemma":[0.00009488615,0.00013730176,0.000107016676,0.00012116153,0.00040801163,0.00008964649,0.000093322225,0.00021017736,0.000024161816],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092861115,0.0001331362,0.00007612534,0.00002415349,0.00095496053,5.732271e-7,0.0012503223,0.0000051466363,0.98878473,0.001603488,0.00021313864,0.0060255947],"study_design_scores_gemma":[0.0030097098,0.0006541709,0.018375574,0.000034311768,0.00031432277,0.000018649696,0.00039694388,0.0001253707,0.9715057,0.00043106722,0.0050037126,0.00013046726],"about_ca_topic_score_codex":0.00056508585,"about_ca_topic_score_gemma":0.000063182546,"teacher_disagreement_score":0.022749022,"about_ca_system_score_codex":0.000017112436,"about_ca_system_score_gemma":0.00004893072,"threshold_uncertainty_score":0.55990034},"labels":[],"label_agreement":null},{"id":"W1993372469","doi":"10.1016/s0306-4530(01)00064-6","title":"How circulating cytokines trigger the neural circuits that control the hypothalamic–pituitary–adrenal axis","year":2001,"lang":"en","type":"review","venue":"Psychoneuroendocrinology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":196,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Medical Research Council Canada; Canada Research Chairs","keywords":"Signal transduction; Hypothalamus; Neuroscience; Proinflammatory cytokine; Biological neural network; Biology; Glucocorticoid; Glucocorticoid receptor; Innate immune system; Immune system; Inflammation; Cell biology; Endocrinology; Immunology","score_opus":0.05794773227127036,"score_gpt":0.28830002070094995,"score_spread":0.23035228842967959,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993372469","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010573195,0.9827031,0.0001271563,0.0069580153,0.005936475,0.0021742987,0.00006441754,0.00022959066,0.000749644],"genre_scores_gemma":[0.021628326,0.97006583,0.0000017320812,0.0007956129,0.00055352517,0.0006110279,0.0002526292,0.00014576671,0.00594553],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9921997,0.003839471,0.0011283645,0.0010721126,0.00015541102,0.001604896],"domain_scores_gemma":[0.994314,0.0025190688,0.0011622349,0.0018367853,0.00012819454,0.000039680315],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033246007,0.0011248922,0.0022573923,0.0004281636,0.0010458633,0.00018296705,0.0019213927,0.000555225,0.00030368887],"category_scores_gemma":[0.00042504145,0.0006143258,0.0013053548,0.0006329303,0.0009052178,0.00023505047,0.00022734367,0.0025263685,0.0008911544],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009774499,0.00008759043,0.00006671504,0.0005686805,0.0012815008,0.0002935189,0.000117543896,0.0000034902216,0.00065666524,0.0005291877,0.0062705516,0.99002683],"study_design_scores_gemma":[0.0014958131,0.00016034427,0.00036393118,0.0004159401,0.0011074267,0.019978946,0.000088329514,0.0000059358526,0.00009605512,0.00007993123,0.9756476,0.0005597367],"about_ca_topic_score_codex":0.000044916924,"about_ca_topic_score_gemma":0.000014234809,"teacher_disagreement_score":0.9894671,"about_ca_system_score_codex":0.00008715112,"about_ca_system_score_gemma":0.00015758924,"threshold_uncertainty_score":0.99988675},"labels":[],"label_agreement":null},{"id":"W1993535064","doi":"10.1371/journal.pone.0044606","title":"Neutrophils Are Not Less Sensitive Than Other Blood Leukocytes to the Genomic Effects of Glucocorticoids","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Immunology","score_opus":0.02284683055432795,"score_gpt":0.20539599901948696,"score_spread":0.182549168465159,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993535064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99693996,0.0016865514,0.00003409266,0.0005064049,0.00014859067,0.0004904305,0.000009240648,0.00003135735,0.00015338272],"genre_scores_gemma":[0.9987281,0.000059167505,0.000038997303,0.000335965,0.00011538368,0.000044091044,0.0000097351685,0.000019423574,0.0006491644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902093,0.00029655686,0.00020902869,0.00012258886,0.000044056982,0.00030683455],"domain_scores_gemma":[0.9991839,0.0002821979,0.00014031677,0.00030293324,0.00007128259,0.000019375133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020602423,0.00012913493,0.00027175096,0.00007117662,0.00010515059,0.0000066997272,0.000136931,0.00012281322,0.000036191217],"category_scores_gemma":[0.00013659983,0.00009277256,0.00006571504,0.000083909545,0.000082507024,0.000076794044,0.0000739689,0.00015152853,0.0006506627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032661145,0.0005605301,0.0042273165,0.000060460392,0.00063884864,0.0000015494297,0.0015661592,0.000001831205,0.9918961,0.00029227464,0.000043774446,0.00038452487],"study_design_scores_gemma":[0.0005688715,0.00015935884,0.14901318,0.00011477394,0.00025370685,0.0000077541745,0.00016108954,0.0000010812375,0.8493556,0.000005409898,0.00026172725,0.000097468735],"about_ca_topic_score_codex":0.00007336963,"about_ca_topic_score_gemma":0.00001136238,"teacher_disagreement_score":0.14478587,"about_ca_system_score_codex":0.000021846452,"about_ca_system_score_gemma":0.000020989923,"threshold_uncertainty_score":0.836317},"labels":[],"label_agreement":null},{"id":"W1993771936","doi":"10.1111/j.1741-6892.2004.00426.x","title":"ES03.01  The body as fortress: innate immune surveillance","year":2004,"lang":"en","type":"review","venue":"Vox Sanguinis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Fortress (chess); Innate immune system; Medicine; Immunology; Immune system; Intensive care medicine; History; Ancient history","score_opus":0.016508042405753213,"score_gpt":0.2954409562960088,"score_spread":0.2789329138902556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1993771936","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012735889,0.99065554,0.000009461664,0.00016246321,0.0018436713,0.0009699045,0.00006592445,0.00015714818,0.0060085207],"genre_scores_gemma":[0.0007921549,0.9872844,0.000007658524,0.00008396292,0.00014457962,0.00022322273,0.0010908347,0.00008727782,0.010285914],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967408,0.00093716837,0.0010876361,0.0005014732,0.00008449537,0.00064838515],"domain_scores_gemma":[0.9973967,0.0005220789,0.00074383785,0.0012170502,0.00009807849,0.00002227641],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008871972,0.0006266384,0.0015905222,0.00024300175,0.00046466835,0.000064486296,0.00094581145,0.0009436596,0.0013468262],"category_scores_gemma":[0.0004118838,0.0003945214,0.00081247586,0.00045109942,0.00031153226,0.00010209616,0.00024608301,0.0009722818,0.009224665],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011269807,0.00009300542,0.0000036797192,0.0034960923,0.0012796746,0.00005069792,0.00055450434,7.206381e-7,0.0004251174,0.0026233033,0.0049508293,0.98640966],"study_design_scores_gemma":[0.0005001573,0.00012399902,0.000043931595,0.0036013753,0.00027606197,0.00036059076,0.00006624065,9.825345e-8,0.00057651574,0.000103408776,0.993886,0.00046162785],"about_ca_topic_score_codex":0.00036558416,"about_ca_topic_score_gemma":0.000019011453,"teacher_disagreement_score":0.9889352,"about_ca_system_score_codex":0.00014540169,"about_ca_system_score_gemma":0.00061485334,"threshold_uncertainty_score":0.9998507},"labels":[],"label_agreement":null},{"id":"W1994175475","doi":"10.1097/01.shk.0000191343.21228.78","title":"NEUTRALIZATION OF TUMOR NECROSIS FACTOR IN PRECLINICAL MODELS OF SEPSIS","year":2005,"lang":"en","type":"review","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Sepsis; Immunology; Tumor necrosis factor alpha; Medicine; Streptococcus pneumoniae; Neutralization; Pneumonia; Antimicrobial; Population; Inflammation; Systemic inflammation; Biology; Microbiology; Antibiotics; Internal medicine; Antibody","score_opus":0.08548767647807477,"score_gpt":0.36173012261233645,"score_spread":0.2762424461342617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994175475","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014393385,0.99729013,0.00009607172,0.000011480832,0.0002194834,0.0004894962,0.00007205097,0.000015462916,0.0003664537],"genre_scores_gemma":[0.0027325728,0.9959953,0.00006307736,0.000009576446,0.000018485927,0.00002183415,0.00032303875,0.000023882345,0.0008122632],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978139,0.00046524912,0.0012667873,0.00022456223,0.000035111876,0.00019443546],"domain_scores_gemma":[0.99865794,0.0002844443,0.00065608,0.000327714,0.00006488069,0.000008919716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023581042,0.00022320602,0.001395862,0.00028370146,0.000018778954,0.0000032977414,0.00023607755,0.0005512661,0.0004017814],"category_scores_gemma":[0.00010494376,0.00018719993,0.0003993015,0.00023948685,0.000084238454,0.00010972404,0.00006108112,0.00029448938,0.000093626564],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010195756,0.00014423509,0.000020803922,0.0042280876,0.0002254328,7.819892e-7,0.0002656546,0.00004622626,0.00081160746,0.000460777,0.00042926887,0.99326515],"study_design_scores_gemma":[0.00067931507,0.00017876041,0.00010595389,0.006964143,0.0003874327,0.000015119587,0.000018160228,0.000039529637,0.003855498,0.00013326817,0.9872915,0.00033130823],"about_ca_topic_score_codex":0.000058283746,"about_ca_topic_score_gemma":0.000017534552,"teacher_disagreement_score":0.99293387,"about_ca_system_score_codex":0.00005174764,"about_ca_system_score_gemma":0.00022147557,"threshold_uncertainty_score":0.76337916},"labels":[],"label_agreement":null},{"id":"W1994306951","doi":"10.1016/s0165-2427(01)00379-8","title":"Monocytes are required for optimum in vitro stimulation of bovine peripheral blood mononuclear cells by non-methylated CpG motifs","year":2002,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; Biology; Peripheral blood mononuclear cell; CpG site; Population; Immune system; Molecular biology; Secretion; T cell; Immunology; Cell; In vitro; DNA methylation; Biochemistry; Gene expression; Gene; Medicine","score_opus":0.01495533771166194,"score_gpt":0.2314873541842438,"score_spread":0.21653201647258186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994306951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97482836,0.022773115,0.0006327966,0.00022423764,0.00059925235,0.000674679,0.000084329295,0.00007137768,0.00011183823],"genre_scores_gemma":[0.99581987,0.001805047,0.00059771026,0.00007526809,0.000015790765,0.00016743789,0.00026652782,0.000050295308,0.0012020373],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971742,0.0006326628,0.00094250176,0.0005494162,0.0000355555,0.0006656511],"domain_scores_gemma":[0.9985662,0.00028561716,0.00048452622,0.0005120137,0.00013136494,0.000020274258],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044644816,0.00040684876,0.00086934416,0.00041424666,0.00026417308,0.00001580344,0.0003276439,0.00085517997,0.0002883621],"category_scores_gemma":[0.00013272816,0.00042274254,0.00014623925,0.00023135246,0.0006744303,0.0003398364,0.00019427684,0.00045401292,0.000057813635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00672901,0.0004657254,0.0002171867,0.000059993054,0.00024282647,0.000039730938,0.0010326477,0.000040115723,0.984678,0.00004609023,0.000264057,0.006184655],"study_design_scores_gemma":[0.0087655075,0.0070425374,0.009518511,0.000071198396,0.000121726895,0.00073012157,0.0005437576,0.0017900672,0.96736485,0.00013174473,0.003398008,0.0005219518],"about_ca_topic_score_codex":0.00006612302,"about_ca_topic_score_gemma":7.985033e-7,"teacher_disagreement_score":0.020991512,"about_ca_system_score_codex":0.000049393344,"about_ca_system_score_gemma":0.000025955396,"threshold_uncertainty_score":0.99982244},"labels":[],"label_agreement":null},{"id":"W1994333507","doi":"10.1038/sj.gene.6364280","title":"A CXCL2 tandem repeat promoter polymorphism is associated with susceptibility to severe sepsis in the Spanish population","year":2006,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"","keywords":"Biology; Odds ratio; Haplotype; Heterozygote advantage; Allele; Sepsis; Genetics; Population; Immunology; Gene; Internal medicine; Medicine","score_opus":0.010615653567010488,"score_gpt":0.2210327050932341,"score_spread":0.21041705152622361,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994333507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99735403,0.0008946513,0.00002519408,0.00087753445,0.000065198474,0.00038665003,0.000012449249,0.00002913256,0.0003551682],"genre_scores_gemma":[0.99821836,0.000034770765,0.000021258398,0.00031456578,0.00001604603,0.000020757698,0.00026584437,0.000009083886,0.001099301],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99869424,0.00055522553,0.0002620197,0.00019372514,0.000047707763,0.00024706524],"domain_scores_gemma":[0.9994073,0.00008817767,0.00009480617,0.0003417836,0.000058932106,0.00000898647],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000658167,0.00014608199,0.00019862984,0.00007323249,0.0003232659,0.000037378915,0.00013491373,0.00017375857,0.00013069776],"category_scores_gemma":[0.000053556316,0.00009822687,0.000043229575,0.00022182534,0.00006221284,0.00012715865,0.000056927787,0.0002066561,0.000025930525],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009334303,0.00046776928,0.5580952,0.000025446885,0.00016746343,0.000010868359,0.0066287303,0.000027957638,0.4098105,0.0002814529,0.0028122726,0.02073888],"study_design_scores_gemma":[0.0008266774,0.00022592484,0.9784959,0.000041147337,0.000029273499,0.000045060035,0.0005448526,0.000008022032,0.017074052,0.00023400778,0.0023100812,0.00016499253],"about_ca_topic_score_codex":0.0054092924,"about_ca_topic_score_gemma":0.001731745,"teacher_disagreement_score":0.42040068,"about_ca_system_score_codex":0.0000547175,"about_ca_system_score_gemma":0.000024708757,"threshold_uncertainty_score":0.8177268},"labels":[],"label_agreement":null},{"id":"W1994547455","doi":"10.1016/s0006-2952(99)00411-6","title":"Prophylaxis against lipopolysaccharide-induced lung injuries by liposome-entrapped dexamethasone in rats","year":2000,"lang":"en","type":"article","venue":"Biochemical Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"","keywords":"Dexamethasone; Lipopolysaccharide; Lung; Liposome; Pharmacology; Medicine; Chemistry; Immunology; Anesthesia; Internal medicine; Biochemistry","score_opus":0.006762678540492027,"score_gpt":0.2573724253962821,"score_spread":0.25060974685579007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994547455","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894079,0.007797319,0.0000063263556,0.00088270486,0.0006643625,0.00053557847,0.000017426932,0.00012237582,0.00056601263],"genre_scores_gemma":[0.99632305,0.0006990665,0.000024842102,0.0010231982,0.00009497177,0.00013313565,0.00021488874,0.000028334198,0.0014584961],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99768335,0.00048682676,0.0005923688,0.00048612728,0.00005698661,0.00069432455],"domain_scores_gemma":[0.9993419,0.00021363448,0.00011484893,0.00022601648,0.000049912956,0.000053667056],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00031195593,0.00030285885,0.000439517,0.0001853015,0.000125836,0.000016375938,0.00034272223,0.0006532509,0.00414694],"category_scores_gemma":[0.00007980129,0.00029324956,0.00011130247,0.00027689704,0.0002628142,0.00015976338,0.00007453333,0.00069970504,0.00092788547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013687105,0.00028067143,0.00015063143,0.000021618891,0.00011800784,0.000009130934,0.00020620601,0.0000013273271,0.87923753,0.000013935663,0.10916877,0.009423436],"study_design_scores_gemma":[0.0021564888,0.00022263305,0.00025182893,0.000019628045,0.00003814548,0.0000129029195,0.000035242952,0.000022597707,0.9723953,0.000024979241,0.024505839,0.00031442128],"about_ca_topic_score_codex":0.00007768794,"about_ca_topic_score_gemma":7.7079414e-7,"teacher_disagreement_score":0.09315774,"about_ca_system_score_codex":0.00012989492,"about_ca_system_score_gemma":0.00010748341,"threshold_uncertainty_score":0.99995196},"labels":[],"label_agreement":null},{"id":"W1994577423","doi":"10.1016/s0966-842x(00)01840-0","title":"Gram-negative pathogens and molecular mimicry: is there a case for mistaken identity?","year":2000,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University Health Network","funders":"","keywords":"Molecular mimicry; Biology; Mimicry; Autoimmunity; Immune system; Identity (music); Immunology; Genetics; Ecology","score_opus":0.013038985526892814,"score_gpt":0.2664542658464295,"score_spread":0.2534152803195367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1994577423","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99340296,0.0042796135,0.00008772047,0.0007074639,0.00014064519,0.00023462797,0.00023525285,0.000036803613,0.00087491045],"genre_scores_gemma":[0.9929819,0.0002107158,0.00039454584,0.00050840795,0.000014851086,0.00006369477,0.0003902313,0.000023543496,0.0054121213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984988,0.00031300276,0.00035711715,0.00039465146,0.000008987261,0.00042744126],"domain_scores_gemma":[0.99944985,0.00015010066,0.00008871898,0.00025362067,0.00004132716,0.000016384616],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026868758,0.00022385038,0.00034566395,0.00024730738,0.00014450736,0.000017371442,0.00014927775,0.0003978267,0.0023859856],"category_scores_gemma":[0.00003352647,0.00020791017,0.000114621835,0.00019860928,0.00027562134,0.00012182338,0.00003972393,0.00020945036,0.00017726462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005327828,0.00007145379,0.00018168986,0.000016572993,0.00013843317,0.00022930908,0.0015992912,0.0000018084256,0.9462686,0.0004680154,0.002596255,0.047895778],"study_design_scores_gemma":[0.007406381,0.0007283605,0.0020142586,0.00006256418,0.00016087829,0.010316845,0.0009182734,0.000018129927,0.72902733,0.0021799433,0.24639384,0.00077318016],"about_ca_topic_score_codex":0.00019138063,"about_ca_topic_score_gemma":0.0002627654,"teacher_disagreement_score":0.24379759,"about_ca_system_score_codex":0.00003900237,"about_ca_system_score_gemma":0.000023432669,"threshold_uncertainty_score":0.998526},"labels":[],"label_agreement":null},{"id":"W1995051048","doi":"10.1016/j.cair.2004.07.001","title":"A role for the lymphotoxin/LIGHT pathway in T-cell mediated autoimmunity and infectious disease","year":2004,"lang":"en","type":"article","venue":"Clinical and Applied Immunology Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Lymphotoxin; Lymphotoxin beta receptor; Immunology; Autoimmunity; Autoimmune disease; Immune system; Biology; Signal transduction; Tumor necrosis factor alpha; Receptor; T cell; Cell biology; Cancer research; Antibody; Genetics","score_opus":0.019730008124960542,"score_gpt":0.2738768840458428,"score_spread":0.25414687592088225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995051048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8033242,0.19258957,0.00011010432,0.0012404445,0.00032839508,0.0017492524,0.000009297231,0.00005337285,0.00059537456],"genre_scores_gemma":[0.95091635,0.047227375,0.000036932695,0.00077643874,0.000029896935,0.00065729977,0.00007975982,0.000017130234,0.00025880305],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793625,0.00042431403,0.0009313681,0.00035193376,0.000018374925,0.00033775164],"domain_scores_gemma":[0.998277,0.0009947863,0.00025875977,0.00040920186,0.000028426479,0.000031834417],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015681182,0.00023729817,0.00065683154,0.000072278424,0.00032574098,0.000018428756,0.00020650239,0.00036605707,0.000039883587],"category_scores_gemma":[0.0005567069,0.00015172131,0.00014244336,0.00014071749,0.00068910955,0.000062728424,0.00015611797,0.00048512587,0.00018293144],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030573711,0.0010454209,0.0043701665,0.00021267578,0.00031057195,0.000004334232,0.0011230436,0.0000048107886,0.6678475,0.014423317,0.0003920784,0.3072087],"study_design_scores_gemma":[0.012599289,0.00045830593,0.08836172,0.0001456278,0.00013860238,0.00004269318,0.00027270915,0.000008988796,0.018607875,0.006715757,0.8721842,0.00046423078],"about_ca_topic_score_codex":0.000027165002,"about_ca_topic_score_gemma":0.000017045864,"teacher_disagreement_score":0.87179214,"about_ca_system_score_codex":0.000022429329,"about_ca_system_score_gemma":0.00011088869,"threshold_uncertainty_score":0.6187016},"labels":[],"label_agreement":null},{"id":"W1995396458","doi":"10.1371/journal.pone.0059604","title":"Enhancing Specific-Antibody Production to the ragB Vaccine with GITRL That Expand Tfh, IFN-γ+ T Cells and Attenuates Porphyromonas gingivalis Infection in Mice","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Government of Jiangsu Province; National Natural Science Foundation of China","keywords":"Porphyromonas gingivalis; Biology; Microbiology; Immune system; Spleen; Antibody; Virology; Molecular biology; Immunology; Bacteria","score_opus":0.016757017041042082,"score_gpt":0.20650764345490033,"score_spread":0.18975062641385826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995396458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99543965,0.00091898633,0.00011891206,0.0024022572,0.00016373595,0.0008002647,0.0000020449065,0.000047761285,0.00010637474],"genre_scores_gemma":[0.99705946,0.0006883158,0.00011836357,0.00009259825,0.00008757637,0.00008726921,0.0000495254,0.0000183999,0.0017984684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998982,0.00017583606,0.00024763372,0.0002822523,0.0000576574,0.0002546219],"domain_scores_gemma":[0.9994435,0.000088579014,0.0001183712,0.00023133385,0.00010236776,0.000015869715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032458932,0.00015780634,0.00022395459,0.00017335525,0.00017150759,0.00004670308,0.00007921307,0.00010006985,0.00015676276],"category_scores_gemma":[0.000055159187,0.000109725035,0.000021965114,0.00021399197,0.000038519844,0.00032351314,0.000048653004,0.00021817382,0.00052346854],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022212368,0.00018846105,0.0093582515,0.000032665765,0.00012145273,0.0000010474516,0.001224655,0.000008942303,0.98724127,0.0000090071735,0.0004933287,0.0010987768],"study_design_scores_gemma":[0.00045385875,0.00018242371,0.09721841,0.00016687703,0.000045023073,0.00001350331,0.00023482079,0.000005575866,0.9006894,0.000022235397,0.00082735164,0.00014049825],"about_ca_topic_score_codex":0.00065073895,"about_ca_topic_score_gemma":0.0001850801,"teacher_disagreement_score":0.08786016,"about_ca_system_score_codex":0.00003606991,"about_ca_system_score_gemma":0.00001615338,"threshold_uncertainty_score":0.67283034},"labels":[],"label_agreement":null},{"id":"W1995498415","doi":"10.1097/00003246-200006000-00030","title":"Endotoxin promotes adhesion of human erythrocytes to human vascular endothelial cells under conditions of flow","year":2000,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Incubation; Endothelial stem cell; Endothelium; Adhesion; In vitro; Medicine; Cell adhesion; Molecular biology; Immunology; Biology; Chemistry; Biochemistry; Endocrinology","score_opus":0.015838756414154026,"score_gpt":0.2989627438639674,"score_spread":0.2831239874498134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995498415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950571,0.0016948493,0.00012445253,0.00051849324,0.00017146993,0.00033190908,0.000065931,0.000036626443,0.0019991505],"genre_scores_gemma":[0.998961,0.000025170571,0.00006241886,0.00013219898,0.00007665222,0.000023263932,0.0003084786,0.000014573904,0.00039628238],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987517,0.00022445925,0.00048827447,0.00020142476,0.00008930277,0.00024483915],"domain_scores_gemma":[0.99906194,0.00032858836,0.000043669166,0.00029258884,0.00023494817,0.0000382425],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019118849,0.00014910001,0.00041728714,0.000148646,0.00017005973,0.0000027723368,0.00014795095,0.00016921187,0.008290331],"category_scores_gemma":[0.00025646389,0.00012186837,0.0001051214,0.0001172447,0.000679244,0.00005693552,0.000028654436,0.0001632706,0.0001385245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007833626,0.00008731067,0.000037520396,0.00016017837,0.000043128217,0.0000035397425,0.001361648,0.000004862301,0.99129844,0.0048661954,0.0006327921,0.0014260306],"study_design_scores_gemma":[0.0011328761,0.0016026731,0.0011841451,0.00026218512,0.00012783933,0.000010013569,0.0017229496,0.000001208071,0.9897904,0.00079162396,0.0032587582,0.00011533088],"about_ca_topic_score_codex":0.000105805164,"about_ca_topic_score_gemma":0.000011504623,"teacher_disagreement_score":0.008151806,"about_ca_system_score_codex":0.000028123832,"about_ca_system_score_gemma":0.00003365687,"threshold_uncertainty_score":0.99261624},"labels":[],"label_agreement":null},{"id":"W1995658707","doi":"10.1128/jb.182.18.5225-5230.2000","title":"Characterization of <i>Escherichia coli</i> DNA Lesions Generated within J774 Macrophages","year":2000,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":101,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Israel Science Foundation; Petroleum Technology Alliance Canada","keywords":"Biology; Escherichia coli; DNA damage; Respiratory burst; Microbiology; DNA; Bacteria; Intracellular; Macrophage; Reactive oxygen species; Enterobacteriaceae; Molecular biology; Gene; Cell biology; In vitro; Biochemistry; Genetics","score_opus":0.00924546744456763,"score_gpt":0.22076071855923585,"score_spread":0.2115152511146682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1995658707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981077,0.00040364414,0.00009120904,0.0003071199,0.00077538664,0.000095903226,0.000014245219,0.0000126412115,0.00019217117],"genre_scores_gemma":[0.99708056,0.0006552191,0.0001313689,0.00017932884,0.00008327035,0.0000026526277,0.00010242912,0.000013907201,0.0017512849],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982372,0.00053998304,0.0008903167,0.000107735665,0.00003297443,0.0001917789],"domain_scores_gemma":[0.9988108,0.00006847246,0.0007371234,0.00015472797,0.0002071034,0.000021757429],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040982664,0.00013985566,0.0004516011,0.00015430873,0.00009067094,0.0000090050335,0.00019071263,0.00028189045,0.0024511241],"category_scores_gemma":[0.00006101522,0.0001126662,0.000120544624,0.00015328814,0.00015781238,0.00019885151,0.000019782045,0.00028199755,0.00014940198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011679932,0.00008179484,0.00021642857,0.000010326963,0.00015177259,0.000010732621,0.00039255628,0.000018129453,0.9930638,0.00006254076,0.00020846796,0.004615426],"study_design_scores_gemma":[0.0010408335,0.0005843958,0.04976884,0.00004323778,0.00005270154,0.0003242541,0.000038988408,0.00000684746,0.9241812,0.000021468768,0.023832882,0.000104343555],"about_ca_topic_score_codex":0.0000094590305,"about_ca_topic_score_gemma":0.0000014189433,"teacher_disagreement_score":0.06888262,"about_ca_system_score_codex":0.000025297199,"about_ca_system_score_gemma":0.00014320633,"threshold_uncertainty_score":0.99846077},"labels":[],"label_agreement":null},{"id":"W1996017909","doi":"10.1016/s0165-2427(00)00162-8","title":"Effects of human IL-8 isoforms on bovine neutrophil function in vitro","year":2000,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Dairy Farmers of Ontario","keywords":"Superoxide; Zymosan; Myeloperoxidase; Chemotaxis; Degranulation; In vitro; Lipopolysaccharide; Molecular biology; Neutrophile; Interleukin 8; Alkaline phosphatase; Leukotriene B4; Monocyte; Biology; Granulocyte; Biochemistry; Chemistry; Immunology; Cytokine; Inflammation; Enzyme; Receptor","score_opus":0.007016968813595927,"score_gpt":0.22255648702221412,"score_spread":0.2155395182086182,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996017909","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892792,0.008461402,0.000008485285,0.00016034754,0.0006479072,0.00036838095,0.000008117016,0.000075002914,0.0009911661],"genre_scores_gemma":[0.9965886,0.0014961853,0.00001716484,0.00019276483,0.00002021628,0.000086476415,0.00013982643,0.00002886777,0.0014299053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975205,0.0007840207,0.0006737019,0.00043745767,0.000034135795,0.0005501955],"domain_scores_gemma":[0.99906236,0.0002478778,0.00019004568,0.00044735504,0.00003814386,0.000014195595],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003450696,0.00033866544,0.00064734847,0.00048418343,0.00025750336,0.000007633885,0.00024949785,0.00062311685,0.0004744832],"category_scores_gemma":[0.000049989016,0.0003127241,0.00010863198,0.00021563988,0.0006772581,0.00021442704,0.00010511315,0.00062661374,0.00037564445],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014619413,0.00035013483,0.00012920336,0.000055208486,0.00011176218,0.00010572662,0.00042504983,0.0000015013102,0.9231195,0.0005702437,0.000026845542,0.06048545],"study_design_scores_gemma":[0.005318753,0.016224954,0.2122985,0.00008645549,0.000059366117,0.0012674729,0.00011595366,0.0000023643645,0.7535139,0.0005352146,0.010214272,0.00036282558],"about_ca_topic_score_codex":0.000071304225,"about_ca_topic_score_gemma":0.0000011161892,"teacher_disagreement_score":0.21216929,"about_ca_system_score_codex":0.000043833865,"about_ca_system_score_gemma":0.000029346982,"threshold_uncertainty_score":0.99993247},"labels":[],"label_agreement":null},{"id":"W1996028958","doi":"10.1016/j.tcm.2005.06.001","title":"Is There a Role for Cardiomyocyte Toll-Like Receptor 4 in Endotoxemia?","year":2005,"lang":"en","type":"review","venue":"Trends in Cardiovascular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"TLR4; Lipopolysaccharide; Immune system; Toll-like receptor; Myocyte; Receptor; Sepsis; Biology; Cell biology; Immunology; Inflammation; Innate immune system; Medicine; Internal medicine","score_opus":0.03923148993024987,"score_gpt":0.3235173426324253,"score_spread":0.28428585270217543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996028958","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000048277387,0.99357265,0.000035550387,0.00013815431,0.0012834971,0.0010991015,0.000044430974,0.00006131522,0.003717036],"genre_scores_gemma":[0.0002452341,0.9909607,0.00004387973,0.000068002744,0.0005683252,0.0009723319,0.0013865713,0.00009970532,0.0056552175],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99582684,0.0010947841,0.0013418363,0.0008326473,0.00016860646,0.00073528406],"domain_scores_gemma":[0.99793005,0.00035970577,0.0002813818,0.0013268968,0.00006611224,0.000035837933],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002408278,0.0007224465,0.0046692244,0.001541907,0.00011747909,0.000007964537,0.00052992837,0.0012203454,0.000957319],"category_scores_gemma":[0.00015039902,0.000554954,0.002741847,0.000882387,0.00019174586,0.00009877685,0.0001408417,0.0009468993,0.00026489398],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010717813,0.000033384254,0.000006398894,0.0013294058,0.002936814,0.000027231508,0.0006234012,0.0000056226736,0.00003977832,0.00002772625,0.0054337005,0.98942935],"study_design_scores_gemma":[0.003896627,0.00015087757,0.000045642082,0.0066409535,0.0018716763,0.00022992231,0.000121238896,0.0000016144901,0.000114020644,0.000008058872,0.98642784,0.0004915402],"about_ca_topic_score_codex":0.00023256529,"about_ca_topic_score_gemma":0.00003501354,"teacher_disagreement_score":0.9889378,"about_ca_system_score_codex":0.00045675866,"about_ca_system_score_gemma":0.00016928192,"threshold_uncertainty_score":0.99995595},"labels":[],"label_agreement":null},{"id":"W1996118452","doi":"10.1016/j.vetimm.2011.09.004","title":"In vivo administration of ligands for chicken toll-like receptors 4 and 21 induces the expression of immune system genes in the spleen","year":2011,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of Guelph","funders":"","keywords":"Biology; Immune system; TLR4; Toll-like receptor; TLR9; Innate immune system; CpG Oligodeoxynucleotide; Immunology; Lipopolysaccharide; Receptor; Acquired immune system; Interferon; Major histocompatibility complex; Spleen; Stimulation; Gene; Gene expression; Genetics; Endocrinology","score_opus":0.0238514812219997,"score_gpt":0.2481600901106681,"score_spread":0.2243086088886684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996118452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9770159,0.021188175,0.000020562755,0.00020083433,0.00081744016,0.00060075894,0.000011615667,0.000012622945,0.0001321059],"genre_scores_gemma":[0.9979194,0.0016401326,0.00007458431,0.00003067958,0.000011060389,0.00017992688,0.000027776056,0.000013184502,0.00010328125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99782187,0.0007213522,0.0008519642,0.0002705005,0.000030998064,0.00030333153],"domain_scores_gemma":[0.9986725,0.00041904664,0.000423102,0.00042356818,0.000055887864,0.000005910218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013240895,0.00022063688,0.0005133934,0.00027053244,0.00017826255,0.0000062423633,0.00037390867,0.00046412178,0.00003406068],"category_scores_gemma":[0.00007746315,0.0001457083,0.00007421052,0.00016539733,0.00081778533,0.0002073832,0.00016292151,0.00031086014,0.0000027811311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0047659194,0.0001270245,0.0009989678,0.00009606166,0.0000516029,0.000018764986,0.0083577195,2.0119093e-7,0.9823164,0.0013436148,0.000017600498,0.0019061336],"study_design_scores_gemma":[0.0018756705,0.0038073524,0.071180776,0.00014473501,0.00003941824,0.0022065917,0.008657768,0.0000019343906,0.91015553,0.0001610699,0.0016060335,0.00016308506],"about_ca_topic_score_codex":0.000130855,"about_ca_topic_score_gemma":0.000010849563,"teacher_disagreement_score":0.072160825,"about_ca_system_score_codex":0.00001633975,"about_ca_system_score_gemma":0.000054709253,"threshold_uncertainty_score":0.5941812},"labels":[],"label_agreement":null},{"id":"W1996399705","doi":"10.1046/j.1365-2141.2003.04271.x","title":"Platelets may inhibit leucotriene biosynthesis by human neutrophils at the integrin level","year":2003,"lang":"en","type":"article","venue":"British Journal of Haematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Institut National de la Santé et de la Recherche Médicale","keywords":"Platelet; Chemistry; Biochemistry; Lipoxygenase; Arachidonate 5-lipoxygenase; Leukotriene B4; Arachidonic acid; Integrin; Platelet activation; Chemotaxis; Metabolite; Inflammation; Immunology; Biology; Enzyme; Receptor","score_opus":0.017597820731875328,"score_gpt":0.23742325087976054,"score_spread":0.21982543014788522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996399705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9788135,0.018101277,0.00011748795,0.0012506483,0.0006439683,0.00012820026,0.000018923974,0.000015414184,0.0009105399],"genre_scores_gemma":[0.9952673,0.00086194027,0.000037337086,0.00024075857,0.000025220479,0.000005621531,0.000020535797,0.000021752083,0.0035195411],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975186,0.0009894735,0.0008441628,0.00017682373,0.0000651206,0.0004058071],"domain_scores_gemma":[0.9986808,0.0003399011,0.0005752911,0.00020483206,0.00016836044,0.000030870102],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009167048,0.00017823138,0.0005716735,0.00013953303,0.00047534943,0.000036337355,0.0003288029,0.00034987292,0.0015007737],"category_scores_gemma":[0.0004687114,0.00014711282,0.00020562866,0.00012672102,0.00040972876,0.00016054197,0.00006693397,0.0006161702,0.00031717846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026318867,0.00014359222,0.00028345687,0.000019371158,0.00032984035,0.0027592587,0.00020905731,0.0000033441686,0.88621175,0.0025306966,0.09828379,0.008962667],"study_design_scores_gemma":[0.0010970904,0.00015113028,0.00064931036,0.0000960348,0.000048442438,0.20716509,0.00015527196,1.15885605e-7,0.6230074,0.00028259453,0.1672112,0.0001362978],"about_ca_topic_score_codex":0.00008472203,"about_ca_topic_score_gemma":0.00006065489,"teacher_disagreement_score":0.2632043,"about_ca_system_score_codex":0.00007318587,"about_ca_system_score_gemma":0.00008147332,"threshold_uncertainty_score":0.999412},"labels":[],"label_agreement":null},{"id":"W1996565536","doi":"10.1002/jcp.20739","title":"Microbial induction of CARD15 expression in intestinal epithelial cells via toll‐like receptor 5 triggers an antibacterial response loop","year":2006,"lang":"en","type":"article","venue":"Journal of Cellular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Institut National de la Santé et de la Recherche Médicale","keywords":"TLR5; NOD2; Flagellin; Biology; Transfection; TLR4; TLR2; Enterocyte; Toll-like receptor; Cell biology; Innate immune system; Intestinal epithelium; Microbiology; Immune system; Cell culture; Signal transduction; Immunology; Receptor; Genetics; Biochemistry; Epithelium; Small intestine","score_opus":0.006745677035198192,"score_gpt":0.21219904624033112,"score_spread":0.20545336920513294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1996565536","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957132,0.0003366706,0.0006685267,0.00005404929,0.0030321875,0.00015718666,0.00001071673,0.0000106096495,0.000016868902],"genre_scores_gemma":[0.99884385,0.00004178384,0.00033261516,0.00001669978,0.0004034765,0.0000020785458,0.00009459204,0.000020194939,0.00024472678],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962323,0.0020433369,0.0011194232,0.00021717942,0.00006820068,0.00031956323],"domain_scores_gemma":[0.99829596,0.00020170104,0.0010091716,0.00023568042,0.00023245133,0.000025055555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011375467,0.0002161524,0.0006366512,0.00048510716,0.00007681649,0.000009156265,0.00027059796,0.0004333203,0.00027891644],"category_scores_gemma":[0.00009212901,0.00018542132,0.00020978271,0.00017437647,0.00024325908,0.00031632197,0.000051328967,0.00050679286,0.000050949948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.028405478,0.00035674364,0.00004394118,0.000019349542,0.00003885799,0.000016990578,0.00026194725,0.00013524812,0.9691378,0.0000105052995,0.0006075936,0.00096552836],"study_design_scores_gemma":[0.0032385811,0.0015009522,0.0045151063,0.00008289276,0.00003327442,0.00018339157,0.000112120375,0.000006812294,0.98464996,0.000115400646,0.0053904466,0.00017106101],"about_ca_topic_score_codex":0.00008433534,"about_ca_topic_score_gemma":0.000004658525,"teacher_disagreement_score":0.025166897,"about_ca_system_score_codex":0.00008908535,"about_ca_system_score_gemma":0.00020090157,"threshold_uncertainty_score":0.75612617},"labels":[],"label_agreement":null},{"id":"W199702951","doi":"10.4142/jvs.2001.2.1.15","title":"Immunostimulatory effects of anionic alkali mineral complex solution Barodon in porcine lymphocytes","year":2001,"lang":"en","type":"article","venue":"Journal of Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agribrands Purina (Canada)","funders":"Seoul National University","keywords":"Antigen; CD8; Feed conversion ratio; Adjuvant; Internal medicine; Biology; Immunology; Endocrinology; Medicine; Body weight","score_opus":0.021629858019351137,"score_gpt":0.27976937739441204,"score_spread":0.2581395193750609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W199702951","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950451,0.0037770902,0.00015804035,0.00010785689,0.000670913,0.00008298162,4.086262e-7,0.000005365174,0.00015224284],"genre_scores_gemma":[0.9993433,0.00030265044,0.00017741331,0.00003571297,0.000022714314,6.848371e-7,0.000002521217,0.0000041058197,0.00011091986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988767,0.00018006294,0.0004992187,0.0001096277,0.000091899,0.0002424773],"domain_scores_gemma":[0.999155,0.00014474626,0.00037266265,0.00015220334,0.00015716278,0.000018264242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095473096,0.00009664254,0.00025081375,0.00057786703,0.00010520523,0.000009768537,0.0003143278,0.00006944657,0.00006395493],"category_scores_gemma":[0.0002194075,0.000080968966,0.00007325432,0.000510192,0.00039132225,0.0005757698,0.00007446552,0.00013816157,0.00001630267],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008946289,0.00009746196,0.0020934967,0.000020760264,0.000012719976,0.00007444205,0.00023022013,0.000086529806,0.9925052,0.00005439314,0.00008628619,0.0038438844],"study_design_scores_gemma":[0.003137769,0.004933979,0.6634968,0.00030656866,0.000017066157,0.0040732278,0.00009491127,0.00033112644,0.3188291,0.00005040491,0.0045859353,0.0001431253],"about_ca_topic_score_codex":0.00003572937,"about_ca_topic_score_gemma":9.115302e-7,"teacher_disagreement_score":0.6736761,"about_ca_system_score_codex":0.00014310879,"about_ca_system_score_gemma":0.00027150437,"threshold_uncertainty_score":0.33018187},"labels":[],"label_agreement":null},{"id":"W1997135231","doi":"10.1016/j.cellimm.2012.12.001","title":"The TLR2 agonists lipoteichoic acid and Pam3CSK4 induce greater pro-inflammatory responses than inactivated Mycobacterium butyricum","year":2012,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipoteichoic acid; TLR2; Biology; Innate immune system; Immune system; Microbiology; Toll-like receptor; Antigen presentation; Receptor; TLR4; Immunology; T cell; Bacteria; Staphylococcus aureus; Biochemistry","score_opus":0.011985213857501235,"score_gpt":0.21719939905636193,"score_spread":0.2052141851988607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997135231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9652782,0.030310495,0.000044763932,0.00089597155,0.0022878246,0.00050247915,0.0000073042506,0.00017261451,0.0005003504],"genre_scores_gemma":[0.9908747,0.0008113416,0.000017711352,0.00008490551,0.00014389292,0.0001038513,0.0001271732,0.000052748506,0.0077836756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962661,0.0015475935,0.000599711,0.00039716923,0.00006600466,0.001123375],"domain_scores_gemma":[0.9982776,0.00040244826,0.00032928502,0.0008254457,0.00011487696,0.00005035142],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010777541,0.00042916005,0.00043820564,0.0002271861,0.0009918587,0.00007817646,0.0004289649,0.00076862704,0.00017070661],"category_scores_gemma":[0.0003516877,0.00031246612,0.00012662879,0.0002090407,0.00086315244,0.00045312874,0.00035212166,0.00077789807,0.0011760812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018149767,0.00006355453,0.0069566225,0.000019142428,0.00040489482,0.0000122224765,0.0012226518,6.014052e-8,0.9827151,0.0012357003,0.0003092783,0.005245822],"study_design_scores_gemma":[0.00090212794,0.00019950401,0.09573476,0.00002603098,0.000056534514,0.00032287548,0.00040495984,7.1561954e-7,0.7618131,0.00006332984,0.14016874,0.00030730048],"about_ca_topic_score_codex":0.000047775244,"about_ca_topic_score_gemma":0.0000065047007,"teacher_disagreement_score":0.22090195,"about_ca_system_score_codex":0.00011888564,"about_ca_system_score_gemma":0.00015672906,"threshold_uncertainty_score":0.99993277},"labels":[],"label_agreement":null},{"id":"W1997409959","doi":"10.1089/109629600750018141","title":"Pathogenesis of Multiple Organ Dysfunction Syndrome: Gut Origin, Protection, and Decontamination","year":2000,"lang":"en","type":"review","venue":"Surgical Infections","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital","funders":"","keywords":"Multiple organ dysfunction syndrome; Medicine; Pathogenesis; Organ dysfunction; Resuscitation; Immunology; Systemic inflammatory response syndrome; Bacterial translocation; Sepsis; Intensive care medicine; Chromosomal translocation; Biology; Surgery","score_opus":0.02505149409421866,"score_gpt":0.2750092851727026,"score_spread":0.24995779107848395,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997409959","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010760292,0.98636615,0.00019357308,0.000015440886,0.00077790447,0.0011015312,0.00005318034,0.00013455034,0.0005973722],"genre_scores_gemma":[0.00876099,0.98780733,0.0000075160856,0.0000023262874,0.000043324595,0.0003382659,0.0005598421,0.00003583503,0.0024445949],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979079,0.0006736172,0.00077517366,0.0003597674,0.000046214565,0.00023734845],"domain_scores_gemma":[0.998819,0.00037012072,0.00037612344,0.00028147968,0.00012707703,0.000026183528],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033993705,0.00032349664,0.0009854065,0.0005073615,0.00032556604,0.000020671037,0.00008253785,0.0007939834,0.0012014328],"category_scores_gemma":[0.00014516443,0.0002739088,0.00032468952,0.0005458456,0.00015906192,0.00016919839,0.00003953711,0.0004212967,0.00048467924],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044587545,0.00017367075,0.00004850046,0.0014284112,0.00031849218,0.000008961627,0.00003246862,0.0000020286866,0.00039318795,0.00016717726,0.000099094934,0.9972834],"study_design_scores_gemma":[0.0006188082,0.0002589308,0.00044296187,0.0011398987,0.0005046838,0.0023134325,0.000009687411,0.0000021978049,0.00013796607,0.000020048203,0.9942903,0.0002610863],"about_ca_topic_score_codex":0.00014871305,"about_ca_topic_score_gemma":0.000027728474,"teacher_disagreement_score":0.99702233,"about_ca_system_score_codex":0.00010632665,"about_ca_system_score_gemma":0.00015723788,"threshold_uncertainty_score":0.99997133},"labels":[],"label_agreement":null},{"id":"W1997450238","doi":"10.1186/cc11495","title":"Bench-to-bedside review: Clinical experience with the endotoxin activity assay","year":2012,"lang":"en","type":"review","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Medicine; Sepsis; Lipopolysaccharide; Immune system; Immunology; Lipid A; Septic shock; Etiology; Internal medicine; Intensive care medicine","score_opus":0.10151194030800151,"score_gpt":0.43379512014027527,"score_spread":0.33228317983227373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997450238","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000059529924,0.9954957,0.0001239637,0.0007980548,0.00081272126,0.0011545743,0.000035957462,0.00005447479,0.0014650542],"genre_scores_gemma":[0.0031145585,0.9943915,0.000028488594,0.00087893166,0.00019439637,0.00062135776,0.00015222824,0.00004034683,0.00057816895],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99530643,0.0028484398,0.00065742905,0.0004860201,0.00009569789,0.00060598034],"domain_scores_gemma":[0.9957242,0.0028872464,0.0001602061,0.0009250659,0.00022396102,0.000079343554],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010977415,0.00043437062,0.0015438552,0.00006503219,0.00028710914,0.000030509624,0.0005825909,0.00062829675,0.0006793813],"category_scores_gemma":[0.0020638169,0.00023596168,0.0005265271,0.00023393478,0.0006141276,0.00014218054,0.00021786628,0.0012669173,0.0022900696],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043558146,0.00004770457,0.0000062825648,0.010257691,0.0000846653,0.000011980299,0.00026510423,5.5068523e-9,0.000050992967,0.0004919266,0.0047420785,0.983998],"study_design_scores_gemma":[0.000108952576,0.00017062112,0.000036043482,0.009233933,0.0010506293,0.00015890077,0.00017787267,1.4946291e-8,0.00028263568,0.0000014805661,0.988449,0.0003299585],"about_ca_topic_score_codex":0.000009090721,"about_ca_topic_score_gemma":0.0000064410933,"teacher_disagreement_score":0.9837069,"about_ca_system_score_codex":0.000090859,"about_ca_system_score_gemma":0.00028432827,"threshold_uncertainty_score":0.99848676},"labels":[],"label_agreement":null},{"id":"W1997654193","doi":"10.3892/ol.2012.849","title":"Prevention of human adenocarcinoma with CpG-ODN in a mouse model","year":2012,"lang":"en","type":"article","venue":"Oncology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"Texas Tech University Health Sciences Center","keywords":"Immune system; CpG Oligodeoxynucleotide; Nod; Innate immune system; Cancer research; Immunology; Cancer; Biology; Acquired immune system; Oncogene; CpG site; Cancer cell; Cell cycle; Endocrinology; DNA methylation","score_opus":0.02060691522851405,"score_gpt":0.2742508580000257,"score_spread":0.25364394277151164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997654193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972356,0.0003045352,0.00070521503,0.00070238346,0.0000881784,0.00019089843,0.0000018648433,0.000020804244,0.0007505341],"genre_scores_gemma":[0.99790514,0.0000065809236,0.00022912699,0.00032914142,0.000016654583,0.00005653762,0.000044422333,0.000011131896,0.0014012851],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999028,0.0002683645,0.00026709746,0.000117661,0.000023551363,0.00029530487],"domain_scores_gemma":[0.9995965,0.00004643988,0.00015426532,0.00017170144,0.000019746152,0.000011378129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034020416,0.00010292981,0.0002339909,0.00017515823,0.0000536152,0.0000017944228,0.00010505504,0.00019450307,0.00012248514],"category_scores_gemma":[0.0000127398025,0.00008951589,0.000045303077,0.00007589522,0.00015741597,0.00017859915,0.000031463405,0.00020412858,0.000079287565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004032044,0.00019521252,0.021025633,0.000012534659,0.00005517413,0.0000019750867,0.0010743381,0.00008473338,0.9744105,0.0010705661,0.0009771148,0.00068903016],"study_design_scores_gemma":[0.004027856,0.00089828303,0.056363598,0.000042040407,0.00006466633,0.00006623835,0.00027894712,0.000038512404,0.9355093,0.000076058524,0.0023959773,0.00023849591],"about_ca_topic_score_codex":0.000053405467,"about_ca_topic_score_gemma":0.000035429,"teacher_disagreement_score":0.038901158,"about_ca_system_score_codex":0.000097152595,"about_ca_system_score_gemma":0.000051718012,"threshold_uncertainty_score":0.36503518},"labels":[],"label_agreement":null},{"id":"W1997664301","doi":"10.1172/jci19930","title":"Pre–B cell colony–enhancing factor inhibits neutrophil apoptosis in experimental inflammation and clinical sepsis","year":2004,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":594,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Hospital for Sick Children; Toronto General Hospital; University of Toronto","funders":"Canadian Institutes of Health Research; Amgen","keywords":"Apoptosis; Inflammation; Sepsis; Tumor necrosis factor alpha; Immunology; Biology; Cytokine; Downregulation and upregulation; Molecular biology; Biochemistry; Gene","score_opus":0.041278757108848874,"score_gpt":0.3440752805889518,"score_spread":0.30279652348010294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997664301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99669254,0.0007021125,0.00014660262,0.0011156087,0.00104515,0.00021973849,0.0000012784774,0.000015082926,0.00006191753],"genre_scores_gemma":[0.9984151,0.000397244,0.00065061916,0.0001916845,0.00024256985,0.000004296448,0.0000145719,0.000013189935,0.00007073676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99595696,0.0008177433,0.002719243,0.00020737661,0.00009842118,0.00020027363],"domain_scores_gemma":[0.9974879,0.00069506775,0.0014268553,0.00013774284,0.00017542583,0.00007699559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021417676,0.00016014097,0.00055246084,0.00021405118,0.00008883004,0.000032628486,0.00012824695,0.0005069472,0.00004104833],"category_scores_gemma":[0.0013831671,0.00014044967,0.00020560606,0.00016446956,0.0002903748,0.0006377514,0.00005425637,0.0007916119,0.000047352773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091187586,0.0002454845,0.036951516,0.000025076624,0.00007610697,0.000004340314,0.0012308758,0.0001341149,0.9555685,0.00014288115,0.00011722879,0.0045919837],"study_design_scores_gemma":[0.004556995,0.0011487803,0.16603523,0.0001870225,0.000040754887,0.000021412956,0.00021605693,0.000018246436,0.8266669,0.0005009616,0.00047542725,0.0001322194],"about_ca_topic_score_codex":0.000032827636,"about_ca_topic_score_gemma":0.000020434036,"teacher_disagreement_score":0.12908371,"about_ca_system_score_codex":0.00009038882,"about_ca_system_score_gemma":0.0003027848,"threshold_uncertainty_score":0.57273716},"labels":[],"label_agreement":null},{"id":"W1997977228","doi":"10.1016/j.rinim.2013.02.002","title":"Tollip-induced down-regulation of MARCH1","year":2013,"lang":"en","type":"article","venue":"Results in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Research in Immunology and Cancer; Université de Sherbrooke; Université de Montréal","funders":"Canadian Institutes of Health Research; Virginia Polytechnic Institute and State University","keywords":"Cell biology; MHC class II; Major histocompatibility complex; MHC class I; CIITA; Endocytic cycle; Chemistry; Biology; Immunology; Antigen; Receptor; Genetics","score_opus":0.0111466420885096,"score_gpt":0.23228494127113578,"score_spread":0.22113829918262617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1997977228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99092484,0.0010681486,0.00003197409,0.00079911615,0.0006294427,0.00040859674,0.0000066160537,0.000044915734,0.006086377],"genre_scores_gemma":[0.9972741,0.00012294651,0.00009360971,0.000029150242,0.000014701728,0.0000515881,0.00015801124,0.000011847728,0.0022440439],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981544,0.00042869025,0.00076698285,0.00024714932,0.00003530217,0.00036744878],"domain_scores_gemma":[0.9988324,0.0003108491,0.0002632418,0.0004583385,0.00012701286,0.000008142289],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040445448,0.00015440349,0.00033931813,0.00037418937,0.00006110792,0.000007488823,0.00025399742,0.0004321765,0.0006789826],"category_scores_gemma":[0.0003896587,0.0001409589,0.0000728662,0.00026629714,0.00018669025,0.00020678004,0.00009420611,0.0002979253,0.0014976619],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075143087,0.000076862576,0.00024372825,0.000008935513,0.00007503238,9.197423e-7,0.00051985093,0.000012374513,0.9567959,0.002026665,0.00059470243,0.038893655],"study_design_scores_gemma":[0.0029836977,0.00029009912,0.27787,0.00004910425,0.000008617646,0.000031892534,0.00023061007,0.00002486058,0.7078774,0.00084370543,0.009633596,0.00015643008],"about_ca_topic_score_codex":0.0009980354,"about_ca_topic_score_gemma":0.00003881467,"teacher_disagreement_score":0.27762628,"about_ca_system_score_codex":0.000060515405,"about_ca_system_score_gemma":0.00007091827,"threshold_uncertainty_score":0.9992798},"labels":[],"label_agreement":null},{"id":"W1998025057","doi":"10.1159/000090001","title":"Toll-Like Receptors: Sentinels of Host Defence against Bacterial Infection","year":2005,"lang":"en","type":"review","venue":"International Archives of Allergy and Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Innate immune system; Pattern recognition receptor; Biology; Immunology; Receptor; Immune system; Acquired immune system; TLR2; Host (biology); Immunity; TLR4; Toll-like receptor; Toll; Microbiology; Genetics","score_opus":0.014328969037668195,"score_gpt":0.2683595869564145,"score_spread":0.2540306179187463,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998025057","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0071292473,0.9852172,0.00010668125,0.000054368633,0.004056004,0.0002643796,0.000050912204,0.000029445426,0.0030917546],"genre_scores_gemma":[0.0018731825,0.994588,0.00009357974,0.000011917133,0.00012637298,0.000033089396,0.0011189675,0.000024407702,0.002130477],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99788857,0.00044448936,0.0010445957,0.00033319966,0.000049999413,0.00023913207],"domain_scores_gemma":[0.99827576,0.00044484632,0.00092041964,0.0002654413,0.000080657825,0.0000128666115],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00013826381,0.00033418855,0.0010320466,0.0005793559,0.00007585858,0.000010277108,0.00040128207,0.00046025132,0.0005377003],"category_scores_gemma":[0.00011281721,0.00029783856,0.00038710496,0.00008683056,0.00058756117,0.00014863224,0.00029537853,0.00039917856,0.0000794643],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004650017,0.00013752861,0.000008363221,0.00035960492,0.0031129844,0.0000016336667,0.00025502092,0.00000179044,0.025611654,0.0011492114,0.00014634668,0.96875083],"study_design_scores_gemma":[0.0006606547,0.00018352742,0.00037259355,0.002080293,0.00007759438,0.000127111,0.000019094201,0.0000024427115,0.002843938,0.000055321332,0.99334675,0.0002306668],"about_ca_topic_score_codex":0.00008978045,"about_ca_topic_score_gemma":0.000022680179,"teacher_disagreement_score":0.9932004,"about_ca_system_score_codex":0.000026337544,"about_ca_system_score_gemma":0.00014533826,"threshold_uncertainty_score":0.99994737},"labels":[],"label_agreement":null},{"id":"W1998065574","doi":"10.1089/jir.2010.0121","title":"Cytokine/Stromal Cell Networks and Lymphoid Tissue Environments","year":2010,"lang":"en","type":"review","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Stromal cell; Lymph node stromal cell; Immune system; Biology; Lymphatic system; Chemokine; Cytokine; Cell biology; Immunology; Innate lymphoid cell; Extracellular matrix; Lymphotoxin; Acquired immune system; Cancer research","score_opus":0.04515702476824561,"score_gpt":0.35700065296563516,"score_spread":0.31184362819738953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998065574","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003903087,0.9935299,0.00022721195,0.000072320894,0.0010574483,0.0005163677,0.000017665543,0.00001028223,0.0006657016],"genre_scores_gemma":[0.006917753,0.9867561,0.00004455782,0.00001126393,0.0005490722,0.000024273904,0.00009402416,0.0000840861,0.005518877],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949256,0.0018678685,0.0016601618,0.0004065922,0.00027933987,0.00086044404],"domain_scores_gemma":[0.99716777,0.0008724387,0.0010654595,0.0005555018,0.00022701987,0.00011179665],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0033862346,0.0005278307,0.001867665,0.0011063889,0.00026536873,0.00010646289,0.0009571363,0.0013619628,0.00069346826],"category_scores_gemma":[0.00025735356,0.00039004418,0.00044051,0.00028992485,0.0005034918,0.0002609273,0.00054749387,0.0046699406,0.000559119],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000790125,0.00023321631,0.000008716397,0.0013314609,0.00044017035,0.00015552908,0.000090153015,0.000003025883,0.103171915,0.000029176597,0.0058531906,0.8878933],"study_design_scores_gemma":[0.0010240261,0.0019917802,0.000010826296,0.0034851406,0.0002597565,0.0036428785,0.000050115734,0.0000025686122,0.018626373,0.000008047265,0.97060597,0.00029252714],"about_ca_topic_score_codex":0.000019706093,"about_ca_topic_score_gemma":0.0000032026064,"teacher_disagreement_score":0.9647528,"about_ca_system_score_codex":0.00033636342,"about_ca_system_score_gemma":0.0004431567,"threshold_uncertainty_score":0.9999345},"labels":[],"label_agreement":null},{"id":"W1998152635","doi":"10.1016/s0198-8859(99)00133-0","title":"Increased serum-soluble interleukin-2 receptor in burn patients: characterization and effects on the immune system","year":2000,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Peripheral blood mononuclear cell; Interleukin 2; Immune system; Receptor; Endocrinology; Internal medicine; Immunology; Western blot; Interleukin; Cytokine; Biology; Andrology; Chemistry; Medicine; In vitro; Biochemistry","score_opus":0.0046375357137363495,"score_gpt":0.18992135781823194,"score_spread":0.1852838221044956,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998152635","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964182,0.0009444242,0.000004424443,0.0002710179,0.000574236,0.00059004663,0.000007140826,0.000095049014,0.0010955123],"genre_scores_gemma":[0.9964093,0.00013332687,0.0000023377152,0.00018141836,0.000028643133,0.00012262297,0.00047410637,0.000024341642,0.002623895],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978074,0.0009962925,0.00049447344,0.000291648,0.00003591012,0.00037431862],"domain_scores_gemma":[0.9990998,0.00025518137,0.0001700882,0.00041178512,0.000052798106,0.000010374158],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00038362722,0.00023356978,0.0003462857,0.00021118642,0.00035600786,0.000032051732,0.00025223114,0.00032179654,0.0013739823],"category_scores_gemma":[0.00006558954,0.00017908688,0.000059600818,0.00015405034,0.0001914705,0.00016225755,0.00006594357,0.00041823517,0.0014439923],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009299535,0.00013358373,0.002061791,0.000044450673,0.0001317598,0.0000035060275,0.0009765661,3.9034586e-7,0.96009785,0.0056382352,0.000117296244,0.029864646],"study_design_scores_gemma":[0.004232527,0.0010605323,0.44448966,0.00043056541,0.00002838858,0.000032083877,0.00028333152,0.0000076657925,0.5050515,0.0000368418,0.044022422,0.00032450963],"about_ca_topic_score_codex":0.00017399133,"about_ca_topic_score_gemma":0.000010722206,"teacher_disagreement_score":0.45504636,"about_ca_system_score_codex":0.00013148754,"about_ca_system_score_gemma":0.000021301445,"threshold_uncertainty_score":0.9995389},"labels":[],"label_agreement":null},{"id":"W1998281322","doi":"10.1021/pr901124u","title":"Proteomic Profiling of Lipopolysaccharide-Activated Macrophages by Isotope Coded Affinity Tagging","year":2010,"lang":"en","type":"article","venue":"Journal of Proteome Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Human Genome Research Institute; National Institutes of Health; Canadian Institute for Theoretical Astrophysics","keywords":"Lipopolysaccharide; Western blot; Molecular biology; TLR4; Proinflammatory cytokine; Chemistry; Gene expression; Messenger RNA; Biology; Gene; Biochemistry; Inflammation; Signal transduction; Immunology","score_opus":0.02874856376871966,"score_gpt":0.33233872107478385,"score_spread":0.3035901573060642,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998281322","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970268,0.00059488876,0.00015530433,0.0006784137,0.00034476497,0.00093880115,0.0000087889,0.000016694448,0.00023551575],"genre_scores_gemma":[0.9976444,0.00013214165,0.0012960351,0.000009414074,0.00008225103,0.000044325472,0.000009538482,0.000024002822,0.0007578838],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973108,0.00089869805,0.00084051467,0.00018059598,0.00025683898,0.00051250844],"domain_scores_gemma":[0.99759805,0.00029582917,0.000649708,0.00031261554,0.0010950294,0.000048771915],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0054025766,0.00015580331,0.0004334504,0.00059126655,0.00027713086,0.000043991702,0.00054879655,0.00033538762,0.00062235596],"category_scores_gemma":[0.0019137707,0.00012302,0.00014173175,0.0003427124,0.00037775078,0.00038344506,0.00014614302,0.0024974688,0.00012409735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013777661,0.00016881163,0.00046043788,0.0000903367,0.00015366149,0.000011951635,0.0002453115,0.0000017666126,0.9941385,0.00016667106,0.0008731657,0.002311625],"study_design_scores_gemma":[0.0012384864,0.0005544858,0.00050944707,0.000119070835,0.000014542997,0.00012701578,0.0001623144,0.000009823105,0.9943003,0.00019097932,0.0026602235,0.000113331334],"about_ca_topic_score_codex":0.00009286173,"about_ca_topic_score_gemma":0.0000019143372,"teacher_disagreement_score":0.0034888058,"about_ca_system_score_codex":0.000064283086,"about_ca_system_score_gemma":0.00049861526,"threshold_uncertainty_score":0.9998038},"labels":[],"label_agreement":null},{"id":"W1998386999","doi":"10.1002/art.21755","title":"Genetic variation in toll‐like receptor 9 and susceptibility to systemic lupus erythematosus","year":2006,"lang":"en","type":"article","venue":"Arthritis & Rheumatism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Wellcome Trust","keywords":"Single-nucleotide polymorphism; Immunology; Haplotype; Lupus nephritis; Biology; Allele; Genetics; Linkage disequilibrium; Genetic variation; Genetic predisposition; Genetic association; Allele frequency; Gene; Genotype; Medicine; Disease; Internal medicine","score_opus":0.004415589842570384,"score_gpt":0.19549181064890697,"score_spread":0.1910762208063366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998386999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98452646,0.01286763,0.0006586795,0.00020348789,0.0008891703,0.0005224608,0.000011016792,0.00007325202,0.00024784968],"genre_scores_gemma":[0.9973841,0.0011736543,0.000510732,0.000045164306,0.000017180868,0.00007666992,0.000050661263,0.000016480099,0.000725365],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984023,0.0003136956,0.0005885803,0.00032564945,0.000047785525,0.00032198618],"domain_scores_gemma":[0.9993955,0.00013343015,0.00011534234,0.0002865717,0.000048686194,0.000020470117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041026933,0.0001684405,0.00030913216,0.00018270468,0.00013293579,0.000035977067,0.00009931573,0.00020290089,0.00034367363],"category_scores_gemma":[0.000075764474,0.00017693861,0.000040470128,0.00015867344,0.00006627219,0.00017180706,0.00005741003,0.00013883688,0.00075801765],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022745159,0.00012653269,0.04332971,0.000085249725,0.0000388729,0.000011386191,0.0031605742,0.00008285414,0.86108845,0.0033042666,0.0050727455,0.083471894],"study_design_scores_gemma":[0.007907976,0.0005575278,0.94814014,0.0022566903,0.000023751616,0.0035550892,0.0006815015,0.00009201676,0.02117222,0.0033542274,0.011313877,0.0009449808],"about_ca_topic_score_codex":0.0014126851,"about_ca_topic_score_gemma":0.0013518622,"teacher_disagreement_score":0.9048104,"about_ca_system_score_codex":0.00007923756,"about_ca_system_score_gemma":0.000037796155,"threshold_uncertainty_score":0.9743036},"labels":[],"label_agreement":null},{"id":"W1998598404","doi":"10.1016/j.immuni.2014.02.013","title":"Targeted Prostaglandin E2 Inhibition Enhances Antiviral Immunity through Induction of Type I Interferon and Apoptosis in Macrophages","year":2014,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":209,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre; McGill University; Hôtel-Dieu de Québec; Public Health Agency of Canada; Centre hospitalier universitaire de Québec; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Prostaglandin E2 receptor; Interferon; Immunity; Influenza A virus; Innate immune system; Immune system; Prostaglandin E2; Immunology; Interferon type I; Virus; Apoptosis; Virology; Receptor","score_opus":0.012778241929339275,"score_gpt":0.25067347296961756,"score_spread":0.2378952310402783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998598404","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99761736,0.0010050982,0.000107295724,0.000069445545,0.00038235862,0.00021336327,0.000005844218,0.000035756908,0.0005635019],"genre_scores_gemma":[0.99915636,0.00036193963,0.000060717102,0.000019741039,0.0000139810045,0.0000114366085,0.00020082251,0.000010235968,0.0001647983],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833363,0.00089915836,0.00037686594,0.00015053092,0.000033846816,0.00020597772],"domain_scores_gemma":[0.999323,0.00012884491,0.00019271487,0.00025663144,0.000092410904,0.0000063931325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006461236,0.00015051558,0.00028392696,0.00015731365,0.00015958016,0.000014009123,0.00010103567,0.00023014734,0.00008161335],"category_scores_gemma":[0.00023452233,0.00013822704,0.000037974176,0.00025047356,0.00024276682,0.00038524866,0.000105143095,0.00041797818,0.000041784806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008631623,0.000113228256,0.0022018624,0.00004909818,0.00003489705,1.8288148e-7,0.0025322796,0.0000011669424,0.9863646,0.00020492886,0.000051397932,0.0075832023],"study_design_scores_gemma":[0.0009996245,0.0006041014,0.06137991,0.00011306912,0.000014692531,0.0000055674236,0.0008572436,0.0000072383887,0.9349348,0.00044098814,0.00051060686,0.00013216719],"about_ca_topic_score_codex":0.0012313805,"about_ca_topic_score_gemma":0.00007123272,"teacher_disagreement_score":0.059178047,"about_ca_system_score_codex":0.00003603301,"about_ca_system_score_gemma":0.000026901951,"threshold_uncertainty_score":0.5636735},"labels":[],"label_agreement":null},{"id":"W1998612008","doi":"10.1002/art.30308","title":"Extra domain A of fibronectin primes leukotriene biosynthesis and stimulates neutrophil migration through activation of Toll-like receptor 4","year":2011,"lang":"en","type":"article","venue":"Arthritis & Rheumatism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Pierre Elliott Trudeau Foundation","funders":"Canadian Institutes of Health Research","keywords":"Leukotriene B4; Receptor; In vivo; Chemotaxis; Arthritis; Lipid signaling; Chemistry; Cell biology; Immunology; Fibronectin; Biology; Inflammation; Biochemistry; Extracellular matrix","score_opus":0.014425719533478697,"score_gpt":0.20891589675952488,"score_spread":0.19449017722604617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998612008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918532,0.006445474,0.0007688392,0.00015313365,0.00016404032,0.00027803544,0.000015234744,0.00003840388,0.00028366045],"genre_scores_gemma":[0.99215794,0.004884449,0.002738831,0.000013567364,0.000005578649,0.0000195632,0.00006402214,0.000015272928,0.000100768186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877274,0.0002343579,0.00055569224,0.00020282365,0.000048958336,0.00018540412],"domain_scores_gemma":[0.99907976,0.00023423154,0.00036100054,0.00022594765,0.00008741316,0.000011649957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023334955,0.00015701781,0.0003494621,0.00012689794,0.00011318515,0.000007402803,0.00009072622,0.00020298478,0.00053161586],"category_scores_gemma":[0.00010883428,0.00015207876,0.00006787835,0.00012910391,0.00022246232,0.00045339903,0.000039552542,0.000097951466,0.000031834992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004008499,0.000090653644,0.0007582908,0.000042517648,0.00010064013,4.3521857e-7,0.0071434723,0.0000026250855,0.9237216,0.0029395598,0.00031429256,0.06448507],"study_design_scores_gemma":[0.0012381744,0.0004171382,0.021988718,0.0005951908,0.000015501952,0.000027162598,0.00056341686,0.0000070684932,0.9718233,0.0017040184,0.0014667057,0.00015361885],"about_ca_topic_score_codex":0.000924865,"about_ca_topic_score_gemma":0.00004240427,"teacher_disagreement_score":0.06433145,"about_ca_system_score_codex":0.000016864024,"about_ca_system_score_gemma":0.00004336076,"threshold_uncertainty_score":0.6201592},"labels":[],"label_agreement":null},{"id":"W1998636363","doi":"10.1097/shk.0b013e3181cc064b","title":"NEUTROPHIL ELASTASE INHIBITOR IMPROVES SURVIVAL OF RATS WITH CLINICALLY RELEVANT SEPSIS","year":2010,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of British Columbia","keywords":"Medicine; Neutrophil elastase; Sepsis; Systemic inflammatory response syndrome; Internal medicine; Gastroenterology; Inflammation","score_opus":0.007538645171981122,"score_gpt":0.24179049031150834,"score_spread":0.2342518451395272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998636363","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99730796,0.00011578445,0.00006416996,0.00038049932,0.0010102576,0.00016039006,0.00001288398,0.00004027033,0.0009078082],"genre_scores_gemma":[0.9978068,0.000037049427,0.00030539843,0.000057864625,0.00007370164,0.000005851812,0.000055447435,0.00001595017,0.0016419534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989905,0.00014073096,0.00041263158,0.00019341735,0.000039681207,0.00022303835],"domain_scores_gemma":[0.9991145,0.00021043445,0.00019014883,0.00035093114,0.000115188435,0.000018787907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003476603,0.00013135855,0.0002554312,0.000068371715,0.00007965091,0.000008216801,0.00014691753,0.00023601679,0.00026652872],"category_scores_gemma":[0.0001532622,0.00009604151,0.00008134222,0.00008410732,0.00021362168,0.000093050854,0.000055355053,0.00041162933,0.0002948691],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018512182,0.00006939592,0.00069660734,0.000014587054,0.00007989755,0.0000038299,0.00012458953,0.0000011517346,0.98940253,0.00039310748,0.00089920784,0.006463846],"study_design_scores_gemma":[0.0015758375,0.0012386035,0.010996823,0.00003116427,0.00005329278,0.00002209725,0.00015439054,0.000005943706,0.95581037,0.00011932217,0.029798163,0.00019397067],"about_ca_topic_score_codex":0.000033420074,"about_ca_topic_score_gemma":0.000042626445,"teacher_disagreement_score":0.03359217,"about_ca_system_score_codex":0.000007180948,"about_ca_system_score_gemma":0.00012485162,"threshold_uncertainty_score":0.39164594},"labels":[],"label_agreement":null},{"id":"W1998744639","doi":"10.1016/j.vetimm.2006.09.008","title":"Innate immune responses induced by classes of CpG oligodeoxynucleotides in ovine lymph node and blood mononuclear cells","year":2006,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Canada Research Chairs","keywords":"CpG Oligodeoxynucleotide; TLR9; Peripheral blood mononuclear cell; Biology; Immunology; Immune system; Cytokine; CpG site; Lymph node; Acquired immune system; Innate immune system; Toll-Like Receptor 9; Gene expression; DNA methylation; In vitro; Gene","score_opus":0.009193691077451525,"score_gpt":0.2231348165811031,"score_spread":0.21394112550365157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998744639","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95955336,0.038856357,0.000016650542,0.0003153924,0.0004368572,0.00029539492,0.00004374134,0.000084364015,0.0003978569],"genre_scores_gemma":[0.9945687,0.0042143962,0.00014466788,0.00008768567,0.000013837108,0.00006801258,0.00011417695,0.000050164013,0.0007383765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99610525,0.0013601427,0.0011624013,0.00060546224,0.000046665926,0.00072005315],"domain_scores_gemma":[0.99837404,0.0004817367,0.00045150094,0.0005819883,0.0000916694,0.000019054249],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007510821,0.00047675835,0.00095505983,0.00066543004,0.00026874113,0.000023451628,0.0003477872,0.0008638669,0.00012653915],"category_scores_gemma":[0.00013331909,0.00047975933,0.00009945006,0.0002908533,0.0012513458,0.0003431118,0.0004532525,0.0005918558,0.000059613794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004294591,0.00039066983,0.0036406023,0.000060461294,0.00017220723,0.00010917331,0.0003830634,0.000001974429,0.9873101,0.0007783897,0.000060323982,0.0027984406],"study_design_scores_gemma":[0.004536112,0.0022169785,0.28224388,0.00009201487,0.000081926846,0.0022116029,0.0003978974,0.000005686128,0.70470804,0.00040019638,0.0026565979,0.000449067],"about_ca_topic_score_codex":0.0008397379,"about_ca_topic_score_gemma":0.0000062502295,"teacher_disagreement_score":0.28260204,"about_ca_system_score_codex":0.000037725993,"about_ca_system_score_gemma":0.00007664504,"threshold_uncertainty_score":0.9997654},"labels":[],"label_agreement":null},{"id":"W1998784632","doi":"10.1007/s003350010131","title":"Identification and characterization of naturally occurring variants of the macrophage scavenger receptor (SR-A)","year":2000,"lang":"en","type":"article","venue":"Mammalian Genome","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital; McGill University","funders":"National Heart, Lung, and Blood Institute","keywords":"Biology; Scavenger receptor; Receptor; Haplotype; Molecular biology; Monoclonal antibody; Cell surface receptor; Internalization; Antibody; Genetics; Genotype; Biochemistry; Gene","score_opus":0.005226054859461045,"score_gpt":0.19720967894798555,"score_spread":0.1919836240885245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998784632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986948,0.00046064955,0.000020696842,0.00012152875,0.00023955938,0.00019141217,0.00003790418,0.000009212183,0.0002242883],"genre_scores_gemma":[0.9917421,0.000107206586,0.000012106683,0.000031648127,0.000016007654,0.000005259202,0.000074402815,0.000007801755,0.008003494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992439,0.00015718136,0.00032131656,0.00012645277,0.000032870517,0.000118273056],"domain_scores_gemma":[0.9995009,0.000016587248,0.00019483076,0.00022683127,0.000054016473,0.000006889832],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022783369,0.000080173304,0.0001327411,0.00005772547,0.000090764064,0.000008875615,0.00014690941,0.00011579026,0.0015223804],"category_scores_gemma":[0.000020094574,0.0000637027,0.00004380954,0.00012458938,0.00010229015,0.00012013189,0.000031579908,0.000092983246,0.00016013112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011691401,0.000018411376,0.00046616813,0.00003233593,0.000028845603,1.8468967e-7,0.0006630997,0.0000015792384,0.9862846,0.000103464416,0.000011968451,0.012272404],"study_design_scores_gemma":[0.00026337258,0.000024756035,0.41936582,0.000023693136,0.00001539715,0.000008266514,0.000026187334,0.0000040169894,0.5714372,0.000013003598,0.008759706,0.000058611135],"about_ca_topic_score_codex":0.000008291739,"about_ca_topic_score_gemma":8.016326e-7,"teacher_disagreement_score":0.41889966,"about_ca_system_score_codex":0.000013832952,"about_ca_system_score_gemma":0.000018830224,"threshold_uncertainty_score":0.99939036},"labels":[],"label_agreement":null},{"id":"W1998805856","doi":"10.1006/geno.2000.6115","title":"Cloning and Characterization of the Murine Toll-like Receptor 5 (Tlr5) Gene: Sequence and mRNA Expression Studies in Salmonella-Susceptible MOLF/Ei Mice","year":2000,"lang":"en","type":"article","venue":"Genomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"","keywords":"Biology; TLR5; Molecular biology; Transmembrane domain; Genetics; Gene; Sequence analysis; Toll-like receptor; Receptor; Innate immune system","score_opus":0.02120594440496888,"score_gpt":0.24585506873446508,"score_spread":0.2246491243294962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998805856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959589,0.003428367,0.000010394206,0.00012547057,0.00022048975,0.00019128811,0.00001116192,0.000010586023,0.000043329186],"genre_scores_gemma":[0.989583,0.0089568,0.00017920708,0.000065270695,0.000020805825,0.0000099250055,0.00004835651,0.000009777983,0.0011268655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992896,0.0001229762,0.0002580194,0.00016410073,0.000019296125,0.00014604013],"domain_scores_gemma":[0.99965364,0.000047063404,0.00011356946,0.00014842929,0.0000298409,0.000007472827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019543263,0.00010324345,0.00017539429,0.000052480555,0.00012510791,0.000007804174,0.00008505751,0.00011214036,0.00006172592],"category_scores_gemma":[0.000021003154,0.000081052436,0.000020583255,0.00007623775,0.00015714465,0.00010181738,0.00007707102,0.00011362839,0.000017056698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021630099,0.000013219945,0.0010785274,0.000026471678,0.00002171166,6.327764e-7,0.002501878,0.00001598248,0.9909333,0.000011405576,0.000051150368,0.005129411],"study_design_scores_gemma":[0.0005502618,0.00005946626,0.011638957,0.00008666587,0.000011723029,0.000035570672,0.00031196297,0.000027524227,0.98052704,0.000028059458,0.0066254875,0.000097274424],"about_ca_topic_score_codex":0.000029099996,"about_ca_topic_score_gemma":0.000006293993,"teacher_disagreement_score":0.01056043,"about_ca_system_score_codex":0.000036697496,"about_ca_system_score_gemma":0.000025988913,"threshold_uncertainty_score":0.33052224},"labels":[],"label_agreement":null},{"id":"W1998879678","doi":"10.1186/1465-9921-13-91","title":"Fas-deficient mice have impaired alveolar neutrophil recruitment and decreased expression of anti-KC autoantibody:KC complexes in a model of acute lung injury","year":2012,"lang":"en","type":"article","venue":"Respiratory Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Fas ligand; CXCL1; Lung; Medicine; Immunology; Myeloperoxidase; Respiratory system; Immune system; Apoptosis; Ventilation (architecture); Tumor necrosis factor alpha; Endocrinology; Internal medicine; Inflammation; Chemistry; Chemokine; Programmed cell death","score_opus":0.11110491417047683,"score_gpt":0.38258982019980103,"score_spread":0.2714849060293242,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998879678","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924643,0.006182977,0.00008260571,0.000056542995,0.00006817059,0.00090728106,0.000056367306,0.00002056568,0.000161182],"genre_scores_gemma":[0.9992309,0.00033973673,0.00008904284,0.000031341395,0.000016372853,0.00008107186,0.0000458281,0.000023099761,0.00014258003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965369,0.0015572421,0.0006810358,0.00030778418,0.00021424242,0.0007027927],"domain_scores_gemma":[0.9986808,0.00029821415,0.00021197087,0.00047530944,0.00026618084,0.00006754146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002881691,0.00019834145,0.00048291349,0.0007350074,0.00018913457,0.000013157782,0.00028274098,0.00030470797,0.00006579459],"category_scores_gemma":[0.00016019541,0.00017334084,0.00010096979,0.00030845366,0.0004588575,0.00027560102,0.00032345796,0.00049019046,0.000020986863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014242623,0.00037411612,0.020702442,0.00013169006,0.0000839171,0.000002399536,0.0013006795,0.000052894135,0.9744391,0.00025460793,0.00053439726,0.000699529],"study_design_scores_gemma":[0.0014417778,0.00037796996,0.04402277,0.00022819164,0.000030168843,0.0000054247157,0.00035430756,0.00078555016,0.9510871,0.000028077684,0.0014832916,0.00015534028],"about_ca_topic_score_codex":0.00014168819,"about_ca_topic_score_gemma":0.000004986475,"teacher_disagreement_score":0.023351934,"about_ca_system_score_codex":0.000110478904,"about_ca_system_score_gemma":0.00026130266,"threshold_uncertainty_score":0.7068634},"labels":[],"label_agreement":null},{"id":"W1998912113","doi":"10.1007/s00280-015-2682-2","title":"Open-label phase 1b study of FOLFIRI plus cetuximab plus IMO-2055 in patients with colorectal cancer who have progressed following chemotherapy for advanced or metastatic disease","year":2015,"lang":"en","type":"article","venue":"Cancer Chemotherapy and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Georgetown Hospital","funders":"National Center for Advancing Translational Sciences; National Center for Research Resources; EMD Serono; National Institutes of Health","keywords":"Medicine; FOLFIRI; Cetuximab; Irinotecan; Colorectal cancer; Gastroenterology; Folinic acid; Neutropenia; Internal medicine; Adverse effect; Phases of clinical research; Chemotherapy; Pharmacology; Cancer","score_opus":0.04090778995048399,"score_gpt":0.3827514266994293,"score_spread":0.3418436367489453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1998912113","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98867404,0.0047821603,0.00007175078,0.00042480035,0.00057817216,0.0052952603,0.00012254906,0.000027827346,0.000023446555],"genre_scores_gemma":[0.99496317,0.00044271504,0.00011944239,0.0007473579,0.000038242044,0.0029439696,0.00011012506,0.000059272003,0.00057569245],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99808156,0.00029713055,0.0005254671,0.0005172452,0.000086543216,0.0004920331],"domain_scores_gemma":[0.9989724,0.0001804783,0.0003685743,0.00017874145,0.00021080842,0.00008898966],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034742794,0.00035913923,0.0008791726,0.00015782613,0.00014683271,0.00002587279,0.0003596565,0.00011010878,0.0002570889],"category_scores_gemma":[0.000026000833,0.00027510352,0.00005391911,0.00023969008,0.0001789327,0.000354758,0.000069450725,0.00020307949,0.0000012292019],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6641867,0.016512582,0.023145288,0.000358045,0.004482962,0.00004591086,0.019882701,0.00031136296,0.15354818,0.000016922746,0.0050145704,0.112494774],"study_design_scores_gemma":[0.7048811,0.014070245,0.0054213027,0.00021194643,0.00068528124,0.0000034168365,0.0018620825,0.00090332754,0.25936463,0.00005159717,0.011766044,0.0007790152],"about_ca_topic_score_codex":0.00019870173,"about_ca_topic_score_gemma":0.00022123143,"teacher_disagreement_score":0.111715764,"about_ca_system_score_codex":0.00029103944,"about_ca_system_score_gemma":0.00086832594,"threshold_uncertainty_score":0.99997014},"labels":[],"label_agreement":null},{"id":"W1999672519","doi":"10.1111/j.1750-3639.2002.tb00445.x","title":"The Clinical Course of Experimental Autoimmune Encephalomyelitis is Associated with a Profound and Sustained Transcriptional Activation of the Genes Encoding Toll‐like Receptor 2 and CD14 in the Mouse CNS","year":2002,"lang":"en","type":"article","venue":"Brain Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Medical Research Council; National Multiple Sclerosis Society","keywords":"Myelin oligodendrocyte glycoprotein; Experimental autoimmune encephalomyelitis; TLR2; Immunology; Biology; Encephalomyelitis; Choroid plexus; Innate immune system; Multiple sclerosis; Proinflammatory cytokine; CD14; Immune system; Central nervous system; Neuroscience; Inflammation","score_opus":0.02226046187187095,"score_gpt":0.2697722274686374,"score_spread":0.24751176559676644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999672519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99257064,0.0035738808,0.000017636712,0.0032520082,0.00010621333,0.00038834586,0.000014581707,0.000007836402,0.00006884981],"genre_scores_gemma":[0.99862593,0.00033003197,0.000014123199,0.00023468441,0.000010741859,0.00003953285,0.000022060512,0.0000067190563,0.00071619893],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99802315,0.0011931935,0.00039809634,0.00015979285,0.000047652386,0.00017811208],"domain_scores_gemma":[0.9986129,0.0009009088,0.00023636433,0.00018101656,0.00006309349,0.0000057432885],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009844798,0.0001075756,0.00021685527,0.00004057054,0.00023024964,0.000009281554,0.00014996964,0.00019048214,0.0000544584],"category_scores_gemma":[0.00025408965,0.000056838027,0.00004958226,0.00011210621,0.0008576021,0.00008337037,0.000035770667,0.00020918334,0.0000011710187],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038499167,0.00016884442,0.00490773,0.0000068585196,0.000077325116,0.0000021464225,0.011112034,7.906645e-7,0.97762525,0.0014545637,0.00041083596,0.0038486111],"study_design_scores_gemma":[0.006830117,0.0015125189,0.66333157,0.00011956684,0.00006735166,0.00033208713,0.02565193,0.00010685218,0.288911,0.00021995425,0.012630395,0.0002866554],"about_ca_topic_score_codex":0.000016134854,"about_ca_topic_score_gemma":0.000019688541,"teacher_disagreement_score":0.68871427,"about_ca_system_score_codex":0.000019883055,"about_ca_system_score_gemma":0.00004461184,"threshold_uncertainty_score":0.31598708},"labels":[],"label_agreement":null},{"id":"W1999716625","doi":"10.1074/jbc.m112.378687","title":"CD8 Lineage-specific Regulation of Interleukin-7 Receptor Expression by the Transcriptional Repressor Gfi1","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Fogarty International Center","keywords":"Biology; Repressor; Interleukin-7 receptor; Enhancer; Transcription factor; Molecular biology; Transcriptional regulation; CD8; Regulation of gene expression; Cell biology; T cell; Gene; Genetics; IL-2 receptor; Immune system","score_opus":0.024158259303017862,"score_gpt":0.23882765091205468,"score_spread":0.2146693916090368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999716625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874423,0.010938914,0.00041835636,0.00025381526,0.00038953274,0.000057999838,0.000012370392,0.000008900297,0.00047776906],"genre_scores_gemma":[0.9982056,0.0005211939,0.00012576126,0.000026234175,0.00022781048,0.00000320715,0.00008092534,0.000005037054,0.00080422795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884355,0.00020850627,0.00061813474,0.000091427275,0.00006184629,0.00017651869],"domain_scores_gemma":[0.99886525,0.00026626265,0.0005551045,0.00015840164,0.00013147331,0.000023484166],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007229218,0.0001120412,0.00023197535,0.000021615318,0.000089989655,0.000006825278,0.00023272584,0.0003207449,0.0020453576],"category_scores_gemma":[0.00022391214,0.0000609694,0.00018508776,0.00006112633,0.00020050985,0.00013418791,0.000031370215,0.00036013304,0.000026159434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093055866,0.00012917914,0.00055227446,0.0000122832525,0.000043766326,2.2210162e-7,0.00018077985,0.0000022020556,0.986459,0.000029953266,0.010303457,0.001356317],"study_design_scores_gemma":[0.00047382314,0.00008344558,0.0041871686,0.00006131126,0.0000107523065,0.000099311466,0.00016984667,4.6777947e-7,0.86442095,0.000020462325,0.13040873,0.00006375366],"about_ca_topic_score_codex":5.9762533e-7,"about_ca_topic_score_gemma":1.4625805e-8,"teacher_disagreement_score":0.122038074,"about_ca_system_score_codex":0.000033794724,"about_ca_system_score_gemma":0.000018773204,"threshold_uncertainty_score":0.9988669},"labels":[],"label_agreement":null},{"id":"W1999838288","doi":"10.1074/jbc.m606721200","title":"Essential Role for Caspase-8 in Toll-like Receptors and NFκB Signaling","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Cell biology; Biology; IκB kinase; Apoptosis; Caspase 8; NF-κB; Signal transduction; Caspase; TLR4; Toll-like receptor; Receptor; Innate immune system; Programmed cell death; Cancer research; Immunology; Immune system; Biochemistry","score_opus":0.01133170648467749,"score_gpt":0.24725089430642713,"score_spread":0.23591918782174964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999838288","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996384,0.0026496828,0.00036399945,0.000102675556,0.00026345893,0.000057942852,0.0000014594985,0.000006282047,0.0001704855],"genre_scores_gemma":[0.9992193,0.00011771766,0.00020506977,0.000040894676,0.00011375625,0.0000015436935,0.000015705187,0.0000039636257,0.0002820799],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918354,0.000042622425,0.000444674,0.00009991776,0.000022357832,0.00020691936],"domain_scores_gemma":[0.99934626,0.00028882577,0.00022424197,0.00005243733,0.00006589142,0.00002233188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008662247,0.00009169749,0.0002226363,0.000043072054,0.000052739433,0.000008068508,0.0000964372,0.0003180982,0.0001696144],"category_scores_gemma":[0.00024408482,0.00006602506,0.00008810159,0.000051890085,0.00009052167,0.00005059249,0.000026314432,0.000254029,0.0000038779217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001186724,0.00004643208,0.0016418409,0.000013184754,0.0000331348,0.000013429931,0.00007923818,0.0000029102223,0.9928111,0.000010511806,0.00021109756,0.0039504226],"study_design_scores_gemma":[0.0010702299,0.00016832633,0.0015844244,0.000034438966,0.000011645135,0.00029573232,0.000483393,0.0000019030845,0.9817095,0.00016112048,0.014392085,0.00008719779],"about_ca_topic_score_codex":0.0000029710063,"about_ca_topic_score_gemma":8.129062e-7,"teacher_disagreement_score":0.014180988,"about_ca_system_score_codex":0.000031758664,"about_ca_system_score_gemma":0.000030068404,"threshold_uncertainty_score":0.26924238},"labels":[],"label_agreement":null},{"id":"W1999907389","doi":"10.1371/journal.pone.0040138","title":"Milk Matters: Soluble Toll-Like Receptor 2 (sTLR2) in Breast Milk Significantly Inhibits HIV-1 Infection and Inflammation","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Child Health and Human Development; Canadian Institutes of Health Research; Bill and Melinda Gates Foundation; Ontario HIV Treatment Network; McMaster University; Children's Hospital Los Angeles","keywords":"TLR2; Inflammation; Innate immune system; Breast milk; Immunology; Receptor; Immune system; Biology; Medicine; Virology; Internal medicine","score_opus":0.018957290286353342,"score_gpt":0.20715583464078394,"score_spread":0.1881985443544306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W1999907389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996188,0.0007406476,0.000046571527,0.001801423,0.00033652436,0.000394952,0.000010249419,0.000085330794,0.0003963163],"genre_scores_gemma":[0.9971377,0.0002872382,0.00013835353,0.00019925433,0.0001593059,0.00006498391,0.0002514968,0.000022584072,0.0017390425],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986421,0.00027388724,0.00039593628,0.00020569252,0.000063978565,0.0004183923],"domain_scores_gemma":[0.99945647,0.00008731961,0.00014783,0.0001953225,0.000081108614,0.000031943637],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043086166,0.00017991905,0.0002699457,0.00027981217,0.00014930178,0.000027049264,0.00006657905,0.00027883356,0.00042187856],"category_scores_gemma":[0.000050294115,0.0001833277,0.00003594473,0.00018851645,0.00010575246,0.0006807831,0.000061952574,0.0002661327,0.0018551354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003905998,0.00037551564,0.025467815,0.0000805146,0.0001189293,4.3148916e-7,0.0013726226,7.674686e-7,0.9678291,0.00010604277,0.001767082,0.0024905861],"study_design_scores_gemma":[0.001410715,0.00011102885,0.047306888,0.00025405272,0.00006806922,0.00003671354,0.00016045377,0.00001920774,0.9445037,0.000026975214,0.0058438564,0.0002583294],"about_ca_topic_score_codex":0.00014965993,"about_ca_topic_score_gemma":0.00004485356,"teacher_disagreement_score":0.023325382,"about_ca_system_score_codex":0.000081938335,"about_ca_system_score_gemma":0.000034845525,"threshold_uncertainty_score":0.99892205},"labels":[],"label_agreement":null},{"id":"W2000022183","doi":"10.1074/jbc.m402111200","title":"The Development of Early Host Response to Pseudomonas aeruginosa Lung Infection Is Critically Dependent on Myeloid Differentiation Factor 88 in Mice","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Pseudomonas aeruginosa; Myeloid; Host (biology); Immunology; Lung infection; Biology; Critically ill; Lung; Host response; Myeloid cells; Microbiology; Pulmonary infection; Immune system; Medicine; Bacteria; Genetics; Internal medicine","score_opus":0.013881105860828174,"score_gpt":0.2545575944345929,"score_spread":0.24067648857376475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000022183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812347,0.00022654145,0.00046079082,0.0008477574,0.00016394313,0.0001059963,0.0000041224384,0.0000074519085,0.000059903785],"genre_scores_gemma":[0.9995841,0.00007666731,0.00012104076,0.000077768076,0.000027367041,0.000006012644,0.0000052675755,0.000004596374,0.000097206896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986584,0.00019187866,0.00071700965,0.00013431112,0.00008463372,0.00021377411],"domain_scores_gemma":[0.9989827,0.00038669136,0.00028836456,0.000108795415,0.00020252404,0.000030890347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068537943,0.00013392931,0.00022979308,0.00007060444,0.00012033024,0.000017628641,0.0001776864,0.00027935795,0.000084873696],"category_scores_gemma":[0.0009307262,0.00008313007,0.0000998684,0.00010505182,0.0000706116,0.000057665176,0.000050097242,0.00038353578,0.000027770522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00530841,0.00015000692,0.00382185,0.000012297432,0.000055168213,0.0000043699943,0.0005881871,0.000010212691,0.9884303,0.000012764371,0.000017125116,0.0015892608],"study_design_scores_gemma":[0.00072626345,0.0002677821,0.2992988,0.000079128804,0.000006011022,0.000028900045,0.00007598636,2.2785922e-7,0.6990509,0.000034278826,0.00036066448,0.00007106566],"about_ca_topic_score_codex":0.0000073938727,"about_ca_topic_score_gemma":0.0000035429416,"teacher_disagreement_score":0.29547694,"about_ca_system_score_codex":0.00022239644,"about_ca_system_score_gemma":0.00015658372,"threshold_uncertainty_score":0.3389946},"labels":[],"label_agreement":null},{"id":"W2000189931","doi":"10.1164/rccm.200803-462oc","title":"Toll-like Receptor 1 Polymorphisms Affect Innate Immune Responses and Outcomes in Sepsis","year":2008,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":245,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Sepsis; Medicine; Odds ratio; Immunology; Single-nucleotide polymorphism; Organ dysfunction; Intensive care; SNP; Innate immune system; Internal medicine; Immune system; Biology; Genotype; Genetics; Gene; Intensive care medicine","score_opus":0.015504662263318541,"score_gpt":0.29176792951314906,"score_spread":0.2762632672498305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000189931","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96125823,0.03526526,0.000030924057,0.0028670696,0.00038653577,0.000080918,0.000004618312,0.0000113606975,0.00009507993],"genre_scores_gemma":[0.99776703,0.0007480726,0.00006704756,0.0012252167,0.000058364036,0.0000043329815,0.0000029061755,0.000012920871,0.000114086724],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99794275,0.0008570324,0.0006488152,0.00017331693,0.00010065928,0.0002774536],"domain_scores_gemma":[0.9981922,0.0011900645,0.00020087972,0.00015511057,0.00018727881,0.00007450392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073132763,0.00019132241,0.00073937024,0.00041457484,0.00016958996,0.000006514373,0.00011878344,0.00010537221,0.00013494091],"category_scores_gemma":[0.0014698125,0.00013618408,0.00007676977,0.00021388524,0.0021459004,0.00017251499,0.000046077952,0.00045315418,0.000008878464],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007070364,0.00014158085,0.22752176,0.000093520895,0.00023752733,0.00072524196,0.009685332,7.3280967e-7,0.637175,0.00059486745,0.0011665454,0.11558751],"study_design_scores_gemma":[0.0087004565,0.020782953,0.81976074,0.00079384213,0.00024692106,0.0032212643,0.023077765,9.2284387e-7,0.06907068,0.00008912006,0.053611238,0.0006440995],"about_ca_topic_score_codex":0.0000551876,"about_ca_topic_score_gemma":0.0000042505017,"teacher_disagreement_score":0.59223896,"about_ca_system_score_codex":0.00003994967,"about_ca_system_score_gemma":0.00010764702,"threshold_uncertainty_score":0.7906659},"labels":[],"label_agreement":null},{"id":"W2000391394","doi":"10.1016/j.vetimm.2009.08.017","title":"Phagocytosis in pup and adult harbour, grey and harp seals","year":2009,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Fisheries and Oceans Canada","funders":"","keywords":"Phagocytosis; Biology; Seal (emblem); HARP; Phoca; Harbour; Lactation; Zoology; Immunology; Pregnancy","score_opus":0.011075397524289505,"score_gpt":0.2423832322284168,"score_spread":0.23130783470412727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000391394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94034815,0.056585662,0.00002018357,0.0018164441,0.00037699807,0.00030691188,0.000009271193,0.000084890766,0.00045147748],"genre_scores_gemma":[0.9864774,0.0120029375,0.000112656846,0.0007659258,0.00001373693,0.000043605614,0.00006591234,0.000019869294,0.0004979722],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99729747,0.00080801005,0.00059779576,0.00059722917,0.000028655437,0.0006708237],"domain_scores_gemma":[0.9991389,0.00019352701,0.00017773606,0.00039167007,0.00007347071,0.000024727735],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005290728,0.0003868086,0.00066255213,0.00046193914,0.00034518077,0.000037581973,0.00019605902,0.0007005186,0.00009638436],"category_scores_gemma":[0.00018794977,0.00037729304,0.00005206611,0.0001688472,0.0008571433,0.00042364912,0.00023196802,0.00064491463,0.00007556239],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020351026,0.00011241427,0.0028239493,0.000022144928,0.00008125495,0.0001856508,0.0012823974,1.5784171e-7,0.9166265,0.0021299866,0.000052426916,0.07464801],"study_design_scores_gemma":[0.0065823724,0.006804091,0.888663,0.0001111189,0.00007642001,0.01633153,0.0009326396,0.000013436205,0.06305204,0.001771881,0.014935345,0.0007261492],"about_ca_topic_score_codex":0.00007167094,"about_ca_topic_score_gemma":0.000004717526,"teacher_disagreement_score":0.88583905,"about_ca_system_score_codex":0.000033088087,"about_ca_system_score_gemma":0.000038151265,"threshold_uncertainty_score":0.9998679},"labels":[],"label_agreement":null},{"id":"W2000708054","doi":"10.1182/blood.v99.3.729a","title":"Neutrophils at the crossroads of cytokine and RA receptors","year":2002,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Receptor; Cytokine; Immunology; Medicine; Biology; Internal medicine","score_opus":0.009599349082399037,"score_gpt":0.19844918942300901,"score_spread":0.18884984034060998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000708054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903264,0.0075551574,0.0000016462355,0.00045882975,0.00016624134,0.000087145134,0.0000039481274,0.000015359436,0.0013852415],"genre_scores_gemma":[0.990691,0.00063795183,0.0000057563857,0.000048900885,0.00001888913,0.000005721063,0.000010224509,0.0000054908355,0.008576052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995503,0.000070464164,0.00015164251,0.00008868334,0.000015644866,0.0001232687],"domain_scores_gemma":[0.9996524,0.000077037635,0.00006887625,0.00017356494,0.000022869619,0.000005247902],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011761733,0.00006612296,0.00010773058,0.000029616545,0.00013313764,0.0000051371935,0.00007511289,0.00009059542,0.0013012283],"category_scores_gemma":[0.000037777816,0.000043562275,0.00003611312,0.000056422952,0.000188806,0.000039621933,0.00005530651,0.00008147418,0.00026154786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006501103,0.000073206495,0.0014121814,0.0000065786594,0.00007562246,9.3727715e-7,0.00045201986,5.994129e-7,0.9908115,0.00018227381,0.0032146072,0.0037054538],"study_design_scores_gemma":[0.0013806928,0.00012493544,0.013942529,0.000009097139,0.00004400646,0.00007740582,0.000039207043,0.0000010250311,0.889196,0.000021296957,0.0951048,0.000059038648],"about_ca_topic_score_codex":0.000014754474,"about_ca_topic_score_gemma":0.00000240464,"teacher_disagreement_score":0.10161554,"about_ca_system_score_codex":0.000004872556,"about_ca_system_score_gemma":0.0000040015566,"threshold_uncertainty_score":0.99961174},"labels":[],"label_agreement":null},{"id":"W2000825465","doi":"10.1074/jbc.m105676200","title":"Co-localization of Leukotriene A4Hydrolase with 5-Lipoxygenase in Nuclei of Alveolar Macrophages and Rat Basophilic Leukemia Cells but Not Neutrophils","year":2001,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Heart, Lung, and Blood Institute","keywords":"Leukotriene B4; Leukotriene; Cytoplasm; Arachidonate 5-lipoxygenase; Leukotriene C4; Cytosol; Leukotriene D4; Lipoxygenase; Arachidonic acid; Chemistry; Biochemistry; Molecular biology; Biology; Enzyme; Immunology; Inflammation","score_opus":0.010075095621116168,"score_gpt":0.21900769003316475,"score_spread":0.2089325944120486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2000825465","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745756,0.002106254,0.00010390909,0.000095379946,0.00004685991,0.00007788072,0.000010989698,0.0000057651278,0.000095380004],"genre_scores_gemma":[0.9979196,0.0018168766,0.000047560858,0.00004565386,0.000032664164,0.0000014368994,0.00002298532,0.0000074087643,0.000105801184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875593,0.0001450132,0.0007015586,0.00014672802,0.00005970966,0.00019106641],"domain_scores_gemma":[0.99891454,0.0001544091,0.00061661005,0.00014141192,0.0001402752,0.000032739],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038923565,0.00015711397,0.00046711837,0.000079967234,0.00004254683,0.0000060113066,0.00015763358,0.0003376294,0.0001937733],"category_scores_gemma":[0.00012514369,0.00010624767,0.00009107599,0.00015140898,0.00035601945,0.00009488773,0.000028952558,0.0003091344,0.0000037765062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032049895,0.00010914397,0.0033458404,0.000057401565,0.00005952232,0.00007527563,0.000071565446,0.00027609357,0.99206495,0.000005651695,0.00004556304,0.00068399194],"study_design_scores_gemma":[0.0021686805,0.000567911,0.0044065127,0.00009702427,0.000028625605,0.00046482155,0.0001231908,0.000026706706,0.99101716,0.000031083102,0.00095759524,0.00011065895],"about_ca_topic_score_codex":0.000014380735,"about_ca_topic_score_gemma":5.095087e-7,"teacher_disagreement_score":0.0010606725,"about_ca_system_score_codex":0.000057042937,"about_ca_system_score_gemma":0.00009849822,"threshold_uncertainty_score":0.43326545},"labels":[],"label_agreement":null},{"id":"W2001256354","doi":"10.1074/jbc.275.7.4670","title":"Identification of Two Major Sites in the Type I Interleukin-1 Receptor Cytoplasmic Region Responsible for Coupling to Pro-inflammatory Signaling Pathways","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":309,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"","keywords":"Alanine scanning; Biology; Signal transduction; Cell biology; Receptor; Transcription factor; Mutant; Kinase; Genetics; Mutagenesis; Gene","score_opus":0.030699311023387757,"score_gpt":0.2687575977179701,"score_spread":0.23805828669458234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001256354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99842775,0.00067260396,0.00012565339,0.00041112112,0.00009491189,0.00020985234,0.000004530348,0.00000871788,0.000044840064],"genre_scores_gemma":[0.9992933,0.00009969535,0.00013540484,0.00005146514,0.00007831148,0.000013066836,0.000026973674,0.0000061598466,0.00029557003],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987401,0.0001256169,0.00078157545,0.00013241648,0.00004677878,0.00017355035],"domain_scores_gemma":[0.9987787,0.00044647072,0.00041678408,0.00015433213,0.00018861126,0.000015089608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013742519,0.00011054758,0.0002459337,0.00006615752,0.00007173669,0.000015032208,0.0002977119,0.00020377107,0.00018221067],"category_scores_gemma":[0.00057823444,0.00007097938,0.00011813711,0.00015766971,0.00007538592,0.000073991294,0.000018653196,0.00026260168,0.000031494386],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033196935,0.00006369525,0.0006173081,0.00003416266,0.00003100642,0.0000042855977,0.0003915807,0.00015966748,0.9940036,0.000041068248,0.00033101722,0.0010029407],"study_design_scores_gemma":[0.0007513608,0.00031280977,0.0006046103,0.00011354377,0.000016176866,0.000106344676,0.0004608622,0.00002543835,0.9947137,0.0002991138,0.0025093523,0.000086674736],"about_ca_topic_score_codex":0.0000010848216,"about_ca_topic_score_gemma":3.820796e-7,"teacher_disagreement_score":0.0025683327,"about_ca_system_score_codex":0.00005409873,"about_ca_system_score_gemma":0.00009117918,"threshold_uncertainty_score":0.28944552},"labels":[],"label_agreement":null},{"id":"W2001263038","doi":"10.1016/j.cellimm.2010.10.008","title":"Novel antagonist antibody to TLR3 blocks poly(I:C)-induced inflammation in vivo and in vitro","year":2010,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"","keywords":"TLR3; Inflammation; In vivo; Biology; Innate immune system; Molecular biology; Chemokine; Monoclonal antibody; Cell biology; Toll-like receptor; Immune system; Antibody; Immunology","score_opus":0.0070228002137853775,"score_gpt":0.23299925406720826,"score_spread":0.22597645385342288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001263038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99543935,0.0010849524,0.00029105457,0.0009979014,0.0011520243,0.00043959712,0.000007706523,0.000053986594,0.00053341914],"genre_scores_gemma":[0.99877304,0.00005628315,0.00020505098,0.000084613675,0.00004339982,0.00004181691,0.0001473838,0.000024700765,0.00062368286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982145,0.00018870986,0.0005888801,0.0004123114,0.00003668078,0.0005589063],"domain_scores_gemma":[0.9992217,0.00012464919,0.00013772838,0.00044504483,0.000046621288,0.000024283625],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00052605296,0.00025692148,0.00041279325,0.00070200313,0.00013538162,0.000029058876,0.00026744572,0.0006647962,0.00023161752],"category_scores_gemma":[0.00019377991,0.00026870376,0.000052154515,0.00035046582,0.00018122738,0.00018227147,0.00017649139,0.00080638047,0.00022804688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009838974,0.0000935946,0.0008980924,0.000009253077,0.00003851789,0.000020036141,0.00075764075,0.0000014233262,0.9899579,0.000526314,0.000013268729,0.006700014],"study_design_scores_gemma":[0.002235026,0.0001196849,0.01415296,0.000022964785,0.000010243506,0.00013927012,0.00019482167,0.000028555276,0.9686172,0.0000588541,0.014145597,0.000274845],"about_ca_topic_score_codex":0.00052492454,"about_ca_topic_score_gemma":0.00029170225,"teacher_disagreement_score":0.02134077,"about_ca_system_score_codex":0.000053532076,"about_ca_system_score_gemma":0.00009199948,"threshold_uncertainty_score":0.9999765},"labels":[],"label_agreement":null},{"id":"W2001809367","doi":"10.1002/eji.200737429","title":"IRAK‐4 kinase activity is required for IRAK‐4‐dependent innate and adaptive immune responses","year":2008,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Biology; Innate immune system; Immune system; Kinase; TLR4; Acquired immune system; Lipopolysaccharide; Cell biology; Immunology","score_opus":0.03076389123853226,"score_gpt":0.24746127742293392,"score_spread":0.21669738618440165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2001809367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9795067,0.015739921,0.0015626325,0.0010495901,0.001027009,0.00026366994,0.000022417778,0.00003427433,0.00079384167],"genre_scores_gemma":[0.9934844,0.002259231,0.0003678306,0.00016750293,0.00008148389,0.0000053999115,0.0000094936695,0.00004552677,0.003579161],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960715,0.0022416762,0.0008869456,0.00027270423,0.00006852155,0.00045863097],"domain_scores_gemma":[0.9977643,0.00048223062,0.0009543108,0.00037022063,0.00039462972,0.000034308447],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0018101538,0.0002907783,0.0006045161,0.00043166438,0.0004617009,0.000018660128,0.0004021454,0.00016915909,0.00013191094],"category_scores_gemma":[0.00061547145,0.0002528146,0.0002396102,0.00013453081,0.0006107266,0.00039783065,0.00018667043,0.0006166331,0.00018969615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016149648,0.00013898376,0.000095355186,0.000010763083,0.00064920605,0.00028727393,0.0020033882,0.0000020940836,0.9516259,0.00021197181,0.0012870053,0.0275384],"study_design_scores_gemma":[0.008395812,0.0053311787,0.06727987,0.00011950092,0.00013178974,0.007131238,0.0006261004,0.0000063136285,0.84663534,0.00011545648,0.06380868,0.00041874882],"about_ca_topic_score_codex":0.0000147912715,"about_ca_topic_score_gemma":8.6499944e-7,"teacher_disagreement_score":0.1049906,"about_ca_system_score_codex":0.00007413188,"about_ca_system_score_gemma":0.00017290156,"threshold_uncertainty_score":0.99999243},"labels":[],"label_agreement":null},{"id":"W2002252836","doi":"10.1097/00003246-200103000-00020","title":"Effects of α - and β -adrenergic stimulation on hepatosplanchnic perfusion and oxygen extraction in endotoxic shock","year":2001,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital","funders":"National Institutes of Health","keywords":"Medicine; Phenylephrine; Cardiac index; Anesthesia; Cardiac output; Artery; Femoral artery; Superior mesenteric artery; Pulmonary artery catheter; Perfusion; Blood flow; Shock (circulatory); Hemodynamics; Blood pressure; Internal medicine","score_opus":0.009874438487409869,"score_gpt":0.2854399687119445,"score_spread":0.2755655302245346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002252836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868409,0.011910516,0.00009706635,0.000368267,0.0001929827,0.00017575311,6.6810765e-7,0.000015135569,0.00039873293],"genre_scores_gemma":[0.9990308,0.00073981844,0.000008203583,0.000069890855,0.000037106147,0.00001045257,0.000040218107,0.0000057824113,0.00005769415],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993207,0.00015346002,0.00020174205,0.00015118977,0.00003987348,0.00013304345],"domain_scores_gemma":[0.9991631,0.0006613544,0.000027798576,0.000080464466,0.000049419563,0.000017891307],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014021338,0.00009204923,0.0001978158,0.0001468962,0.00005241387,0.0000022557526,0.000026840995,0.00014369265,0.00008167419],"category_scores_gemma":[0.00051738357,0.00007324508,0.000013749306,0.000080355356,0.0001789072,0.00006258624,0.00001737814,0.00014879325,0.0000071455233],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006109769,0.000038742153,0.0068596588,0.00020438642,0.0000049554724,0.000024868186,0.0007405331,0.000004769064,0.9667632,0.0011975657,0.000027328913,0.023523025],"study_design_scores_gemma":[0.004734919,0.0022552328,0.5596107,0.00079882244,0.00009784903,0.00021227793,0.0010552326,0.00027915582,0.42912254,0.0003863185,0.0012673037,0.00017960966],"about_ca_topic_score_codex":0.000060484606,"about_ca_topic_score_gemma":0.000010082496,"teacher_disagreement_score":0.55275106,"about_ca_system_score_codex":0.00002473468,"about_ca_system_score_gemma":0.0000103596685,"threshold_uncertainty_score":0.29868478},"labels":[],"label_agreement":null},{"id":"W2002282447","doi":"10.1097/wnr.0b013e3283036e88","title":"Lipopolysaccharide and hypoxia/ischemia induced IL-2 expression by microglia in neonatal brain","year":2008,"lang":"en","type":"article","venue":"Neuroreport","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Microglia; Lipopolysaccharide; Hypoxia (environmental); Ischemia; Cytokine; In vivo; Biology; Immunology; Inflammation; Medicine; Internal medicine; Chemistry","score_opus":0.012388014287859192,"score_gpt":0.22593888392868958,"score_spread":0.2135508696408304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002282447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99765176,0.00096915313,0.000009678483,0.00038194304,0.0002899728,0.00016760621,0.0000058138316,0.00005942159,0.00046463043],"genre_scores_gemma":[0.9960378,0.000106161584,0.00002361085,0.00031597004,0.000018327122,0.000020381596,0.00008736635,0.00001823671,0.0033721572],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988264,0.00012045374,0.00040776737,0.00032774234,0.000044745753,0.0002729148],"domain_scores_gemma":[0.99943703,0.00009749195,0.00015359795,0.00026283873,0.000025946094,0.00002307259],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019089,0.0001652753,0.00021816936,0.00011678125,0.00013481705,0.000008861404,0.0001093818,0.00024516662,0.0001217135],"category_scores_gemma":[0.00021809993,0.00015552278,0.000044089527,0.00008080793,0.000108612825,0.00020176012,0.0000954392,0.0003599845,0.0001133817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001588124,0.000027308366,0.0049153063,0.0000051654606,0.000009316366,0.00019021526,0.00040137133,1.05943585e-7,0.9784378,0.000008879487,0.012989525,0.0028562106],"study_design_scores_gemma":[0.0007491762,0.00006855978,0.015663192,0.000016603746,0.000004053007,0.001603965,0.000048188806,0.0000012600016,0.92847973,0.000013647736,0.053206,0.00014560731],"about_ca_topic_score_codex":0.00011830868,"about_ca_topic_score_gemma":0.0000043651994,"teacher_disagreement_score":0.04995804,"about_ca_system_score_codex":0.00001829018,"about_ca_system_score_gemma":0.00007290585,"threshold_uncertainty_score":0.6342035},"labels":[],"label_agreement":null},{"id":"W2002489327","doi":"10.1186/1742-4690-6-42","title":"TLR2 and TLR4 triggering exerts contrasting effects with regard to HIV-1 infection of human dendritic cells and subsequent virus transfer to CD4+T cells","year":2009,"lang":"en","type":"article","venue":"Retrovirology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Université Laval","funders":"Canadian Institutes of Health Research; Faculté de Médecine, Université Laval; Université Laval","keywords":"TLR2; TLR4; Immunology; Virus; Innate immune system; Toll-like receptor; Virology; TLR7; Viral entry; Transmission (telecommunications); Biology; Immune system; Interferon; Viral replication","score_opus":0.005498895127066794,"score_gpt":0.2125396711896747,"score_spread":0.2070407760626079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2002489327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968208,0.00051772286,0.0016306996,0.00016838628,0.00016660393,0.0005270979,0.000005009613,0.00004413989,0.00011954758],"genre_scores_gemma":[0.99932164,0.00009618648,0.000065858556,0.00027199468,0.000023044231,0.000018340892,0.000011757181,0.000015242405,0.00017592245],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986739,0.00027144953,0.00032676273,0.0003209136,0.000036648078,0.00037028364],"domain_scores_gemma":[0.9994882,0.00019097904,0.000047195346,0.00017590889,0.00004725517,0.000050498078],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002700133,0.00020145327,0.0004469022,0.00026608087,0.0001465921,0.000013964132,0.00006400904,0.00024975938,0.000023442666],"category_scores_gemma":[0.00004382181,0.00018104208,0.000040594892,0.00012499196,0.00010837721,0.00008874919,0.000024630926,0.00020667461,0.000031895896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009235066,0.000045095698,0.0010875706,0.00005954085,0.000052744028,0.0000151926,0.00060958974,0.000028620552,0.9925948,0.00023233143,0.000064018815,0.0042870166],"study_design_scores_gemma":[0.0016667302,0.0035991576,0.061590567,0.000091711925,0.000077301265,0.000097807024,0.000018202052,0.000004455535,0.9316394,0.000021183378,0.0010114782,0.0001820377],"about_ca_topic_score_codex":0.00012549652,"about_ca_topic_score_gemma":0.00007400359,"teacher_disagreement_score":0.060955405,"about_ca_system_score_codex":0.000038242928,"about_ca_system_score_gemma":0.000019936484,"threshold_uncertainty_score":0.7382682},"labels":[],"label_agreement":null},{"id":"W2003261018","doi":"10.1002/iub.309","title":"Tumor necrosis factor, lymphotoxin and cancer","year":2010,"lang":"en","type":"review","venue":"IUBMB Life","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada)","funders":"Russian Academy of Sciences; Russian Foundation for Basic Research; Deutsche Forschungsgemeinschaft","keywords":"Lymphotoxin; Tumor necrosis factor alpha; Lymphotoxin beta receptor; Biology; Immune system; Immunology; Receptor; Lymphotoxin alpha; Innate immune system; Cancer; Signal transduction; Cell biology; Cancer research; Effector; Function (biology); Genetics","score_opus":0.03162346274301932,"score_gpt":0.30994868797430936,"score_spread":0.27832522523129005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003261018","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0015739532,0.9958367,0.0000019310207,0.000044570857,0.0015184765,0.00047833903,0.00013149786,0.000070700575,0.00034387506],"genre_scores_gemma":[0.00008679237,0.99446034,0.000008983532,0.00016285849,0.00011712346,0.00021939998,0.00017970835,0.000047055728,0.0047177193],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984824,0.00025980265,0.0005212374,0.00035312737,0.000032613505,0.00035081673],"domain_scores_gemma":[0.99898285,0.00021456387,0.00034739645,0.00037031603,0.000044273704,0.00004058821],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001652203,0.00038510057,0.0011774064,0.00017146203,0.00016253513,0.00004052389,0.00024281949,0.00078770745,0.0014288157],"category_scores_gemma":[0.00018269186,0.00029665508,0.0002540898,0.00012077092,0.00015847178,0.000090588386,0.0001104649,0.00061377743,0.0011119497],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00002200898,0.000017684999,0.000009041928,0.0014673268,0.00021470127,0.0000032772562,0.00007623634,7.014853e-9,0.0019989815,0.00006968066,0.0027136842,0.99340737],"study_design_scores_gemma":[0.00031466378,0.000026626132,0.00006158148,0.0016311281,0.0002753102,0.000084939056,0.000006052316,1.1723137e-7,0.0011908431,0.0000062187823,0.9960754,0.00032715523],"about_ca_topic_score_codex":0.00020909574,"about_ca_topic_score_gemma":0.000018313367,"teacher_disagreement_score":0.99336165,"about_ca_system_score_codex":0.00006070518,"about_ca_system_score_gemma":0.0005758633,"threshold_uncertainty_score":0.99994856},"labels":[],"label_agreement":null},{"id":"W2003298222","doi":"10.1111/micc.12081","title":"Alpha‐1 Acid Glycoprotein Reduces Hepatic Leukocyte Recruitment in Murine Models of Either Early Endotoxemia or Early Sepsis","year":2013,"lang":"en","type":"article","venue":"Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Canadian Blood Services","funders":"Canadian Blood Services","keywords":"Sepsis; Intravital microscopy; Microcirculation; Lipopolysaccharide; Pharmacology; Inflammation; Medicine; Saline; Perfusion; Immunology; Perforation; Internal medicine","score_opus":0.03795380358564703,"score_gpt":0.25863849766672276,"score_spread":0.22068469408107572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003298222","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99614835,0.0013912842,0.00047739444,0.00015680482,0.00012842713,0.0014416492,0.0000032835376,0.000044773562,0.00020801518],"genre_scores_gemma":[0.9980283,0.00006683812,0.00030108006,0.00005790482,0.000017780061,0.00035126865,0.00008889935,0.000024123145,0.0010638409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846196,0.00027367112,0.00061834854,0.0002727694,0.00006287669,0.00031035414],"domain_scores_gemma":[0.99924445,0.00006420051,0.00027729478,0.00027841018,0.00011921575,0.000016405107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026103234,0.00019939098,0.00032472116,0.0002521857,0.000080105245,0.000024020217,0.00015647695,0.00026454608,0.00064390677],"category_scores_gemma":[0.00003901795,0.00017077598,0.00009244143,0.00023402018,0.000077587334,0.0005296511,0.000046388737,0.00018149722,0.00043583216],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036930168,0.00007280493,0.00201328,0.00003147849,0.00008598285,0.0000018098979,0.0021629597,0.00012820083,0.98062545,0.00004363309,0.00011287266,0.014352198],"study_design_scores_gemma":[0.0014448599,0.00018748785,0.06923433,0.00012004826,0.000025557074,0.000012064162,0.00011804849,0.00024150481,0.9276573,0.0003722269,0.00040445363,0.00018209501],"about_ca_topic_score_codex":0.0021121467,"about_ca_topic_score_gemma":0.00003861953,"teacher_disagreement_score":0.067221045,"about_ca_system_score_codex":0.00014811818,"about_ca_system_score_gemma":0.00006244522,"threshold_uncertainty_score":0.70503277},"labels":[],"label_agreement":null},{"id":"W2003387001","doi":"10.1016/j.vetimm.2011.05.032","title":"TLR9 agonists: Immune mechanisms and therapeutic potential in domestic animals","year":2011,"lang":"en","type":"review","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Merial","keywords":"TLR9; Immune system; Biology; Innate immune system; Acquired immune system; Toll-Like Receptor 9; Immunology; Chemokine; CpG Oligodeoxynucleotide; Immunity; CpG site; Pattern recognition receptor; CCL18; Gene; Gene expression; DNA methylation; Genetics","score_opus":0.030007448230156494,"score_gpt":0.28892204486020157,"score_spread":0.25891459663004507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003387001","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023565238,0.9729731,0.00008252912,0.000040995757,0.0018614968,0.0010838945,0.00003341983,0.00014074464,0.00021858705],"genre_scores_gemma":[0.03742139,0.9610635,0.0001380229,0.00005240367,0.000026658896,0.0003784436,0.00025374122,0.00012271189,0.00054310815],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99283814,0.0030139994,0.0017728903,0.001163242,0.00004320068,0.0011685337],"domain_scores_gemma":[0.9976827,0.00041587418,0.0008152593,0.0009835615,0.00006647931,0.00003614522],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00106732,0.0011580372,0.0033572211,0.001193731,0.0004597865,0.000049171595,0.00070262625,0.002581457,0.00041178317],"category_scores_gemma":[0.000110007175,0.001039724,0.0003773401,0.00035154278,0.0015373274,0.00018818128,0.00091158226,0.0018652567,0.00056135334],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013343376,0.00022163086,0.0000044192093,0.0018979473,0.0009978774,0.0012576939,0.0007211762,8.717089e-8,0.12567474,0.0077107497,0.000008761946,0.8601706],"study_design_scores_gemma":[0.003600674,0.0064777914,0.002531814,0.0033542432,0.0013921995,0.096063435,0.00037285843,0.0000015715977,0.0004898217,0.0034695768,0.88033533,0.0019106652],"about_ca_topic_score_codex":0.00011984518,"about_ca_topic_score_gemma":0.000003179462,"teacher_disagreement_score":0.88032657,"about_ca_system_score_codex":0.00011555376,"about_ca_system_score_gemma":0.00022781853,"threshold_uncertainty_score":0.9992053},"labels":[],"label_agreement":null},{"id":"W2003471223","doi":"10.1016/j.pharmthera.2011.07.002","title":"Sensing sterile injury: Opportunities for pharmacological control","year":2011,"lang":"en","type":"review","venue":"Pharmacology & Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"","keywords":"Pathogenesis; Rheumatoid arthritis; Inflammation; Medicine; Fibrosis; Immunology; Necrosis; Inflammatory response; Liver injury; Pathology; Pharmacology","score_opus":0.23553267566433983,"score_gpt":0.396913975964576,"score_spread":0.16138130030023617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003471223","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008007635,0.9905823,0.00059460977,0.0002464502,0.0050986605,0.002425634,0.00029319077,0.00022327402,0.00045583188],"genre_scores_gemma":[0.00019999556,0.9917097,0.00006927812,0.0035718542,0.00036131163,0.00042118432,0.00051861623,0.00011323062,0.0030348485],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99585974,0.0017059707,0.0010254711,0.0005270265,0.000037979586,0.0008437834],"domain_scores_gemma":[0.99774414,0.0009959609,0.00074221904,0.0002778521,0.00019332032,0.000046488043],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00072606903,0.0007424059,0.0020472638,0.0003345406,0.00038084967,0.000026831915,0.00052989466,0.0012527055,0.001599277],"category_scores_gemma":[0.000008873148,0.0006049765,0.0007502189,0.00012624718,0.00048861577,0.000121253455,0.000116670104,0.0008911681,0.00048277085],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010877762,0.00014082,1.5542459e-7,0.0011294273,0.006038679,0.000015374624,0.00013258362,1.4081624e-7,0.014508847,0.00012665856,0.010563351,0.9662562],"study_design_scores_gemma":[0.0019005843,0.0005002164,2.3326263e-7,0.00033956455,0.01411659,0.00015227047,0.000054191336,0.000009377572,0.005859939,0.000045156437,0.976434,0.00058790634],"about_ca_topic_score_codex":0.0000032720034,"about_ca_topic_score_gemma":3.9240578e-7,"teacher_disagreement_score":0.9658706,"about_ca_system_score_codex":0.00013592755,"about_ca_system_score_gemma":0.00047992528,"threshold_uncertainty_score":0.99964017},"labels":[],"label_agreement":null},{"id":"W2003492168","doi":"10.1002/iub.361","title":"The multifaceted effects of granulocyte colony‐stimulating factor in immunomodulation and potential roles in intestinal immune homeostasis","year":2010,"lang":"en","type":"review","venue":"IUBMB Life","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada); Western University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Immune system; Granulocyte macrophage colony-stimulating factor; Granulocyte; Haematopoiesis; Homeostasis; Immunology; Biology; Granulocyte colony-stimulating factor; Colony-stimulating factor; Myeloid; Cytokine; Cell biology; Stem cell","score_opus":0.012078420382760075,"score_gpt":0.27359703159017745,"score_spread":0.2615186112074174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2003492168","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22923766,0.7692024,0.000025297322,0.000018175879,0.00048493932,0.0009912499,0.000011248406,0.000020048605,0.000008946568],"genre_scores_gemma":[0.25540954,0.74413866,0.000042107833,0.0000036124939,0.00002404988,0.000099199075,0.0001910079,0.00003136754,0.00006049086],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99704075,0.0009805124,0.0012271797,0.00031248873,0.000062247054,0.00037682717],"domain_scores_gemma":[0.9970772,0.0017257385,0.00073724944,0.00036623582,0.00007558195,0.000017957094],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00066479674,0.00037701306,0.0012796057,0.00040406742,0.00016995087,0.000035495174,0.000282076,0.00072492624,0.000016803297],"category_scores_gemma":[0.0016883695,0.0002758677,0.00021023458,0.00030141335,0.00023583237,0.00012437414,0.00015448967,0.0010439596,0.00003443911],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024860428,0.000055275403,0.00027399237,0.001831476,0.000119734585,0.000007733454,0.0003286059,0.000009577523,0.024370212,0.000029840116,0.000003853056,0.9727211],"study_design_scores_gemma":[0.019706259,0.0018543971,0.2866571,0.064472996,0.0017694128,0.00053506106,0.00056779024,0.00084220147,0.03233907,0.00020150721,0.5873741,0.003680118],"about_ca_topic_score_codex":0.00025667174,"about_ca_topic_score_gemma":0.00007511023,"teacher_disagreement_score":0.969041,"about_ca_system_score_codex":0.00007592361,"about_ca_system_score_gemma":0.00020693082,"threshold_uncertainty_score":0.99996936},"labels":[],"label_agreement":null},{"id":"W2004080374","doi":"10.1002/jbm.a.32096","title":"Effect of alginate on innate immune activation of macrophages","year":2008,"lang":"en","type":"article","venue":"Journal of Biomedical Materials Research Part A","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Innate immune system; Proinflammatory cytokine; Lipopolysaccharide; Macrophage; Inflammation; Immune system; Stimulation; Cell biology; Tumor necrosis factor alpha; Immunology; Materials science; Biology; Biochemistry; Neuroscience; In vitro","score_opus":0.028875475023724645,"score_gpt":0.3471030407203116,"score_spread":0.31822756569658694,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004080374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981502,0.00052467734,0.000024560799,0.00042237414,0.0005759824,0.00018987896,0.000012189692,0.0000051158418,0.00009498217],"genre_scores_gemma":[0.99893355,0.0005997158,0.000014376805,0.0000069346083,0.00008971752,0.0000064986734,0.00002403552,0.000010089934,0.0003150968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960926,0.0022532744,0.00095181057,0.00009820973,0.0003129183,0.0002911434],"domain_scores_gemma":[0.9978309,0.0009551776,0.00057695946,0.00018386763,0.00041925083,0.000033803455],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.005576445,0.00011107968,0.00056530914,0.0006297887,0.00010775149,0.0000067895567,0.00027545448,0.0002277187,0.0010116055],"category_scores_gemma":[0.0017672572,0.000072990384,0.000111666544,0.00029551663,0.00077846687,0.00013002502,0.0000805153,0.00035169985,0.00009351352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0070911692,0.00017395508,0.00002469473,0.00016844278,0.00015525139,0.000031260803,0.0002019017,6.946365e-7,0.98456997,0.000049725473,0.0027877998,0.0047451453],"study_design_scores_gemma":[0.0019464351,0.006045909,0.0022951863,0.00041729334,0.000012146186,0.00013111284,0.000024136614,5.6128897e-7,0.98072684,0.00004074448,0.008307245,0.000052411906],"about_ca_topic_score_codex":0.000029508277,"about_ca_topic_score_gemma":3.6652878e-8,"teacher_disagreement_score":0.005871954,"about_ca_system_score_codex":0.000042023992,"about_ca_system_score_gemma":0.00015324121,"threshold_uncertainty_score":0.9999016},"labels":[],"label_agreement":null},{"id":"W2004379146","doi":"10.2345/0899-8205(2004)38[73:betaro]2.0.co;2","title":"Bacterial Endotoxin Testing: A Report on the Methods, Background, Data, and Regulatory History of Extraction Recovery Efficiency","year":2004,"lang":"en","type":"review","venue":"Biomedical Instrumentation & Technology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kimberly-Clark (Canada)","funders":"","keywords":"Limulus amebocyte lysate; Task group; Test (biology); Medical instrumentation; Reliability engineering; Extraction (chemistry); Computer science; Medicine; Engineering; Chromatography; Engineering management; Chemistry; Biology; Immunology","score_opus":0.08797482823156608,"score_gpt":0.3608933572987987,"score_spread":0.2729185290672326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004379146","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0036953767,0.9895341,0.0013318087,0.0003324958,0.0033394073,0.0011629825,0.00006562654,0.00018233486,0.0003559043],"genre_scores_gemma":[0.00072767754,0.98962325,0.004179961,0.00005028435,0.00012695276,0.0002689653,0.0036858849,0.00006540646,0.0012716478],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966886,0.00080274337,0.0014027002,0.0006807684,0.000119084674,0.00030612707],"domain_scores_gemma":[0.9961807,0.0010066747,0.0015470149,0.0011623024,0.00007869622,0.000024570601],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0017960425,0.00036592936,0.0009842988,0.00084148155,0.00013221515,0.000013005191,0.00064257585,0.001381873,0.0003537777],"category_scores_gemma":[0.0016480844,0.00026291586,0.00012930663,0.0005057156,0.0015091985,0.00016627417,0.00031452553,0.0007857802,0.00009262492],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007320568,0.00013328741,8.84948e-7,0.00089472765,0.00021433685,0.000017270502,0.000029614917,4.1801158e-8,0.031029314,0.0009897163,0.0012837243,0.9653339],"study_design_scores_gemma":[0.0005519559,0.00042798606,0.000013173765,0.0022895164,0.00033317824,0.0016443367,0.00011373504,0.0000019881386,0.00342427,0.0002513744,0.9907168,0.00023165297],"about_ca_topic_score_codex":0.000049230042,"about_ca_topic_score_gemma":0.0000015737937,"teacher_disagreement_score":0.9894331,"about_ca_system_score_codex":0.00077826204,"about_ca_system_score_gemma":0.0013689466,"threshold_uncertainty_score":0.9999823},"labels":[],"label_agreement":null},{"id":"W2004597643","doi":"10.1159/000213093","title":"Age-Dependent Changes in Antigenic Promotion, A Th-2 Type of Activity","year":2009,"lang":"en","type":"article","venue":"Gerontology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Medical Research Council","keywords":"Hapten; Spleen; Dinitrophenyl; Sensitization; Antigen; Macromolecule; Chemistry; Immunology; Antibody; Molecular biology; Biology; Biochemistry","score_opus":0.0440014107614933,"score_gpt":0.3004726842099287,"score_spread":0.2564712734484354,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004597643","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954851,0.0012787346,0.000075372576,0.001409897,0.0003511917,0.00018409132,0.0000012560422,0.000029737543,0.0011845934],"genre_scores_gemma":[0.9984809,0.00014375734,0.00003008547,0.00005015671,0.00001272209,0.000006110345,0.000020044812,0.000004188641,0.0012520218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910957,0.00027839467,0.00018376119,0.00016265348,0.000020883966,0.00024475215],"domain_scores_gemma":[0.999594,0.000040990315,0.000112658454,0.00019990113,0.00004560542,0.0000068677473],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024888563,0.00009636227,0.00026271763,0.00014391904,0.000036844296,0.0000025003874,0.000117628195,0.00023970753,0.00032249946],"category_scores_gemma":[0.00007150331,0.00008892241,0.000032399024,0.00010827614,0.00007598731,0.000062780106,0.000021603451,0.00015206732,0.00013351231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004929433,0.0001752149,0.0015995051,0.000008520784,0.00002867208,0.000012661428,0.00057667017,0.0000014066355,0.95441073,0.0005365721,0.00017101206,0.04198609],"study_design_scores_gemma":[0.0010118384,0.0009834396,0.3081223,0.000019362826,0.000014553363,0.00007609501,0.000059893788,0.000004033293,0.6857898,0.00040477118,0.0033943811,0.00011949984],"about_ca_topic_score_codex":0.00014289818,"about_ca_topic_score_gemma":0.0010148616,"teacher_disagreement_score":0.3065228,"about_ca_system_score_codex":0.000032278556,"about_ca_system_score_gemma":0.000044839486,"threshold_uncertainty_score":0.36261505},"labels":[],"label_agreement":null},{"id":"W2004834904","doi":"10.1016/j.cellimm.2011.06.020","title":"LPS response and endotoxin tolerance in Flt-3L-induced bone marrow-derived dendritic cells","year":2011,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fondation des pompiers du Québec pour les grands brûlés","keywords":"TLR4; Biology; Bone marrow; Stimulation; Cell biology; p38 mitogen-activated protein kinases; MAPK/ERK pathway; Dendritic cell; Tumor necrosis factor alpha; Cancer research; Immunology; Signal transduction; Immune system; Endocrinology","score_opus":0.015140095473807279,"score_gpt":0.20379059753375872,"score_spread":0.18865050205995143,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2004834904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986451,0.010895468,0.000088081164,0.0001931511,0.0010649303,0.0004277373,0.000004719154,0.00009276528,0.00078213005],"genre_scores_gemma":[0.9974917,0.00039192467,0.0001423845,0.00012147908,0.000017569359,0.00007678209,0.000038156024,0.000038857626,0.0016811532],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9966989,0.0014251957,0.0006380736,0.00049411075,0.000038830247,0.0007048492],"domain_scores_gemma":[0.99885434,0.00028460156,0.00018406192,0.0005939056,0.000055273522,0.000027796072],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00076756784,0.00032516484,0.0005427109,0.0004284069,0.00018220625,0.000015437929,0.00030784516,0.00062703306,0.0006788518],"category_scores_gemma":[0.00017860813,0.00033914472,0.000097470765,0.00021608753,0.00039645453,0.00019694598,0.0001791618,0.00059123477,0.0011013543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041336413,0.0001334145,0.00021407561,0.000017995519,0.000086747124,0.000152751,0.0030302503,4.8845595e-7,0.9890862,0.00045315534,0.00005905226,0.002632219],"study_design_scores_gemma":[0.0028946723,0.00042622208,0.020609085,0.000053704065,0.000027273489,0.0002694081,0.0005836102,0.000006933928,0.9701867,0.00023900438,0.00436196,0.0003413891],"about_ca_topic_score_codex":0.00018365461,"about_ca_topic_score_gemma":0.000029214409,"teacher_disagreement_score":0.020395009,"about_ca_system_score_codex":0.00007634805,"about_ca_system_score_gemma":0.000103146995,"threshold_uncertainty_score":0.99990606},"labels":[],"label_agreement":null},{"id":"W2005030250","doi":"10.1016/j.dci.2012.11.005","title":"Characterization of three Nod-like receptors and their role in antimicrobial responses of goldfish (Carassius auratus L.) macrophages to Aeromonas salmonicida and Mycobacterium marinum","year":2012,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; China Scholarship Council","keywords":"NOD1; Biology; Aeromonas salmonicida; Nod; Receptor; Microbiology; Mycobacterium marinum; Innate immune system; NOD2; Molecular biology; Gene; Mycobacterium; Biochemistry; Genetics; Bacteria","score_opus":0.01487207856791983,"score_gpt":0.2342500823483887,"score_spread":0.21937800378046887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005030250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969343,0.0015759605,0.000040135914,0.00009262566,0.000696826,0.00045338573,0.000046840316,0.000021703778,0.00013820596],"genre_scores_gemma":[0.99893725,0.00020124718,0.00022352695,0.000047560832,0.000011045838,0.00003605456,0.00028190328,0.000016348507,0.00024503918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981493,0.00045353067,0.00065729965,0.0002762787,0.000034382527,0.0004292256],"domain_scores_gemma":[0.99923503,0.00018674944,0.0002990365,0.00016158588,0.00008995579,0.000027642558],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003217702,0.00028947025,0.0006522593,0.00037300924,0.00010410236,0.00001217692,0.00016193344,0.00026003126,0.00010598856],"category_scores_gemma":[0.00003473902,0.00026375393,0.000039435952,0.0002761097,0.0004196467,0.00031224792,0.00029683768,0.00022474339,0.00004124272],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023683638,0.00012942705,0.08872898,0.000020971374,0.00018377569,9.1112145e-7,0.008958257,1.5184258e-7,0.89556205,0.00006990857,0.00004743047,0.0039297417],"study_design_scores_gemma":[0.0005995495,0.0001458079,0.48150706,0.00004194068,0.0000074119325,0.00006442966,0.00079669774,8.074267e-7,0.5144827,0.0000052015257,0.0022110608,0.0001373434],"about_ca_topic_score_codex":0.00019448565,"about_ca_topic_score_gemma":0.0001121494,"teacher_disagreement_score":0.3927781,"about_ca_system_score_codex":0.00009643362,"about_ca_system_score_gemma":0.0000910371,"threshold_uncertainty_score":0.99998146},"labels":[],"label_agreement":null},{"id":"W2005410905","doi":"10.1186/1753-6561-5-s1-p87","title":"Toll-Like Receptors are critical in controlling colonic inflammation and cancer","year":2011,"lang":"en","type":"article","venue":"BMC Proceedings","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"Carcinogenesis; Proinflammatory cytokine; PI3K/AKT/mTOR pathway; Cancer research; Suppressor; Inflammation; Cancer; Signal transduction; Biology; Immunology; Medicine; Cell biology; Internal medicine","score_opus":0.0257395336626279,"score_gpt":0.2555164740052071,"score_spread":0.2297769403425792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005410905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957223,0.0023902927,0.000034444412,0.0002373411,0.00047342075,0.00022677751,9.580668e-7,0.00005248073,0.0008620021],"genre_scores_gemma":[0.99890995,0.00023387987,0.000118768396,0.00004880613,0.000035727902,0.00009708995,0.00000433106,0.000010643384,0.00054079527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999229,0.000031358206,0.00027322423,0.00019015555,0.000026527212,0.0002497134],"domain_scores_gemma":[0.9996525,0.00007959748,0.000099558114,0.000046939334,0.000105953244,0.000015432444],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031464218,0.000114531875,0.00019576124,0.00013592742,0.00009986843,0.00001879835,0.00007762707,0.000207799,0.0002262032],"category_scores_gemma":[0.00031510214,0.00010687784,0.000029092027,0.000105381834,0.0001148109,0.00031065152,0.000035754616,0.00018048892,0.00007412689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027720248,0.000087650114,0.22866467,0.00028632526,0.000072571136,0.0000036506574,0.010353771,0.0000015307247,0.7348707,0.014145474,0.0018043529,0.0069373213],"study_design_scores_gemma":[0.0061440733,0.000432085,0.29900253,0.0007133037,0.000120836055,0.000102110054,0.004956203,0.00033229755,0.6461884,0.0019793243,0.03926464,0.0007641855],"about_ca_topic_score_codex":0.00008841124,"about_ca_topic_score_gemma":0.000066896166,"teacher_disagreement_score":0.088682264,"about_ca_system_score_codex":0.000049984654,"about_ca_system_score_gemma":0.00004549715,"threshold_uncertainty_score":0.43583515},"labels":[],"label_agreement":null},{"id":"W2005507128","doi":"10.1126/science.1172747","title":"Innate and Adaptive Immunity Cooperate Flexibly to Maintain Host-Microbiota Mutualism","year":2009,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":502,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Population Health Research Institute","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Immune system; Biology; Innate immune system; Acquired immune system; Compartmentalization (fire protection); Immunity; Pattern recognition receptor; Bacteria; Mutualism (biology); Microbiology; Immunology; Receptor; Cell biology; Ecology; Genetics; Enzyme","score_opus":0.011132984969813693,"score_gpt":0.2563289487879263,"score_spread":0.2451959638181126,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005507128","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995507,0.0006579397,0.0003033341,0.0015250642,0.0002642522,0.00022685484,0.0000065422505,0.000052580992,0.0014564447],"genre_scores_gemma":[0.9967418,0.00004835706,0.00026764034,0.0012883751,0.000010020374,0.0000040882287,0.0000073073156,0.000003963793,0.0016284497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989423,0.00014728542,0.00018445632,0.00028439195,0.000041668336,0.0003998669],"domain_scores_gemma":[0.9994277,0.000043485255,0.000052600615,0.00027797106,0.00016115159,0.000037107806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009836422,0.00012634436,0.00014526017,0.00023553296,0.00055046723,0.000063758736,0.00035413879,0.00008648602,0.000076772645],"category_scores_gemma":[0.00020119979,0.00010872637,0.000021424505,0.00062773627,0.0005547428,0.00033725784,0.00014239845,0.00019546339,0.00046488465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016975761,0.000018969624,0.000015321091,9.0887596e-7,0.0000053336053,0.000002377398,0.0011965911,0.0000036029664,0.9819887,0.007637914,0.00020004077,0.008760457],"study_design_scores_gemma":[0.00048970437,0.000563825,0.05229465,0.000032553267,0.000006444066,0.000078815036,0.0005740818,0.000016883161,0.9292551,0.00040221133,0.016070668,0.00021504142],"about_ca_topic_score_codex":0.000052298245,"about_ca_topic_score_gemma":0.000006521962,"teacher_disagreement_score":0.052733604,"about_ca_system_score_codex":0.000057562644,"about_ca_system_score_gemma":0.00016312656,"threshold_uncertainty_score":0.59753066},"labels":[],"label_agreement":null},{"id":"W2005865250","doi":"10.1378/chest.128.3.1690","title":"Interleukin-10 Haplotype Associated With Increased Mortality in Critically Ill Patients With Sepsis From Pneumonia But Not in Patients With Extrapulmonary Sepsis","year":2005,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; St. Paul's Hospital","funders":"","keywords":"Sepsis; Medicine; Haplotype; Organ dysfunction; Pneumonia; Single-nucleotide polymorphism; Internal medicine; Intensive care; Gastroenterology; Genotype; Intensive care medicine; Gene; Genetics; Biology","score_opus":0.008783212309799294,"score_gpt":0.21712638607027446,"score_spread":0.20834317376047518,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005865250","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99897504,0.00009013562,0.000031463933,0.00026480216,0.000083315215,0.00027226747,0.00007284468,0.000032225642,0.0001779022],"genre_scores_gemma":[0.9986166,0.000012426801,0.0001892776,0.000509558,0.00002786108,0.000015648626,0.00047544102,0.000039258422,0.00011393536],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9978267,0.0005083316,0.00063483114,0.0003268171,0.00018141423,0.0005219215],"domain_scores_gemma":[0.99829155,0.00021276399,0.0003244171,0.00026072672,0.00084142695,0.00006910773],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038705184,0.0003199274,0.00047257025,0.0002734,0.00015537877,0.00005279181,0.00024866968,0.0002963664,0.000512088],"category_scores_gemma":[0.000428156,0.0002292684,0.00006187392,0.0002706554,0.00020406878,0.00053733785,0.000046562476,0.0008521404,0.000088490444],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005681499,0.0013230669,0.9832077,0.0000097566535,0.000331753,0.000047366586,0.00051220565,0.000027587115,0.0065396368,0.0000025366464,0.00008445662,0.0022324522],"study_design_scores_gemma":[0.008341594,0.0010695265,0.98260504,0.0004121487,0.0000974491,0.000009385757,0.0001486392,0.000019217608,0.006487557,0.000012946322,0.00045894904,0.00033754724],"about_ca_topic_score_codex":0.00032525542,"about_ca_topic_score_gemma":0.00072065875,"teacher_disagreement_score":0.0026600945,"about_ca_system_score_codex":0.00038557523,"about_ca_system_score_gemma":0.00020387198,"threshold_uncertainty_score":0.9349294},"labels":[],"label_agreement":null},{"id":"W2005893206","doi":"10.1155/2009/860565","title":"Chemokine Receptor and Ligand Upregulation in the Diaphragm during Endotoxemia and Pseudomonas Lung Infection","year":2009,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre; McGill University; Christie (Canada)","funders":"","keywords":"Downregulation and upregulation; Chemokine receptor; Ligand (biochemistry); Lung; Diaphragm (acoustics); Receptor; Chemokine; Pseudomonas aeruginosa; Microbiology; Immunology; Medicine; Biology; Internal medicine; Bacteria; Gene; Biochemistry; Engineering; Genetics","score_opus":0.0031259338878204574,"score_gpt":0.20710355531452496,"score_spread":0.2039776214267045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2005893206","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979006,0.0007993886,0.000028857494,0.0006278877,0.00013030226,0.00034040865,9.759727e-7,0.000024925406,0.00014662456],"genre_scores_gemma":[0.99920714,0.000562002,0.00002471263,0.000016802813,0.00006048895,0.000019477584,0.0000675243,0.000005089943,0.000036743033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991368,0.00016296246,0.00036632578,0.00013786969,0.000056483444,0.00013952925],"domain_scores_gemma":[0.99949116,0.00012637992,0.00019829896,0.00012961589,0.000044693374,0.00000987786],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053160667,0.00011534232,0.00016230486,0.0002012707,0.0001032948,0.000017013992,0.000052601677,0.00017053122,0.000016424694],"category_scores_gemma":[0.00021845216,0.00009138501,0.000026090951,0.00016343032,0.00007209506,0.000339606,0.000016617803,0.00014920738,0.0000062849754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001882667,0.00001650531,0.024920687,0.000045552173,0.000013978673,5.386748e-7,0.0028180883,0.000013577454,0.958663,0.0006679407,0.00004944997,0.012602423],"study_design_scores_gemma":[0.000792277,0.000043362903,0.44592643,0.00003996485,0.00001222706,0.000015422318,0.00007807926,0.000041187388,0.5525797,0.00019278062,0.00021497898,0.00006357127],"about_ca_topic_score_codex":0.00003175038,"about_ca_topic_score_gemma":0.000013532712,"teacher_disagreement_score":0.42100576,"about_ca_system_score_codex":0.000030965737,"about_ca_system_score_gemma":0.000016000935,"threshold_uncertainty_score":0.37265727},"labels":[],"label_agreement":null},{"id":"W2006054534","doi":"10.1016/j.clinbiochem.2014.04.009","title":"Interleukin-1β genotype and circulating levels in cancer patients: Metastatic status and pain perception","year":2014,"lang":"en","type":"article","venue":"Clinical Biochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences North","funders":"Programa Operacional Temático Factores de Competitividade; Liga Portuguesa Contra o Cancro; European Social Fund; Fundação para a Ciência e a Tecnologia; Ministério da Ciência, Tecnologia e Ensino Superior; Ministerstwo Edukacji i Nauki","keywords":"Medicine; Exact test; Internal medicine; Hyperalgesia; Neuropathic pain; Cancer; Genotype; Allodynia; Oncology; Proinflammatory cytokine; Gastroenterology; Cytokine; Inflammation; Anesthesia; Receptor; Nociception; Gene","score_opus":0.02780604333433278,"score_gpt":0.3230703239264384,"score_spread":0.29526428059210563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006054534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99852544,0.0009888203,0.00007372909,0.000109403176,0.00012576395,0.00008565107,0.000005898688,0.00001535328,0.00006993812],"genre_scores_gemma":[0.99923134,0.00020976373,0.00006500729,0.000222918,0.000027196666,0.000010543292,0.000075171774,0.000007570846,0.00015051225],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99870896,0.00038366902,0.000442113,0.00025190553,0.000021098349,0.00019226372],"domain_scores_gemma":[0.99919254,0.0004926071,0.00012063343,0.00012501265,0.000043509226,0.00002570141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00102068,0.00010368505,0.00020622618,0.0000295131,0.00005447697,0.000013441652,0.0000495763,0.00017844506,0.00013295427],"category_scores_gemma":[0.0014638928,0.000094019866,0.000033430024,0.00004568116,0.00017070219,0.000051399205,0.00005697609,0.00023392386,0.00001850158],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001471779,0.00010601288,0.21526095,0.00009895069,0.000054317235,6.7271395e-7,0.00033211918,9.975321e-7,0.54526335,0.00001580039,0.000121001205,0.23859863],"study_design_scores_gemma":[0.0032054258,0.0003322442,0.93723685,0.00020334743,0.000051907642,0.0000068264308,0.00044877434,0.00020619624,0.055143997,0.00022905614,0.0026269534,0.00030840316],"about_ca_topic_score_codex":0.000059950886,"about_ca_topic_score_gemma":0.000009027725,"teacher_disagreement_score":0.7219759,"about_ca_system_score_codex":0.000035366695,"about_ca_system_score_gemma":0.000036442587,"threshold_uncertainty_score":0.3834019},"labels":[],"label_agreement":null},{"id":"W2006794610","doi":"10.1111/j.1365-3083.2005.001554.x","title":"Responses to Free Lipopolysaccharide and <i>Escherichia coli</i> by Normal Human Intestinal Macrophages, Following their Migration out of the Lamina Propria","year":2005,"lang":"en","type":"article","venue":"Scandinavian Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; University of Nottingham","keywords":"Lamina propria; CD14; Lipopolysaccharide; Biology; TLR4; Tumor necrosis factor alpha; NOD2; Intracellular; TLR2; Molecular biology; Escherichia coli; Microbiology; Inflammation; Innate immune system; Immunology; Immune system; Flow cytometry; Epithelium; Cell biology; Biochemistry","score_opus":0.008087086340806219,"score_gpt":0.23102271284901654,"score_spread":0.22293562650821033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2006794610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896439,0.00630169,0.00017957466,0.002711715,0.00080543384,0.00023378344,0.000015454456,0.000013213676,0.00009526006],"genre_scores_gemma":[0.9977393,0.00010949613,0.00024825535,0.00015196754,0.00006248934,0.000007786011,0.000008116912,0.000018482575,0.0016541132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979864,0.00064873765,0.0007927272,0.0001645646,0.00007302119,0.00033460165],"domain_scores_gemma":[0.9985949,0.00017087218,0.0006463983,0.00035312548,0.00020483886,0.000029880075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007833618,0.00021673484,0.00043804033,0.00020948196,0.00031080318,0.00002576421,0.00058296736,0.00021223129,0.000070518974],"category_scores_gemma":[0.00050132617,0.00015064054,0.00017329864,0.00017089682,0.00026502128,0.00026102888,0.00018700416,0.0005327243,0.000018736671],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014225579,0.000072511204,0.004898895,0.000008882426,0.0002454004,0.0000056954486,0.0019955193,0.000001909087,0.9822486,0.00013690998,0.001992519,0.0069705993],"study_design_scores_gemma":[0.0018634475,0.0011443495,0.035909414,0.00022146261,0.00008904734,0.0003572783,0.0007114956,0.0000014573197,0.94740933,0.000102858976,0.01202346,0.00016638386],"about_ca_topic_score_codex":0.000099212666,"about_ca_topic_score_gemma":0.00010025238,"teacher_disagreement_score":0.034839258,"about_ca_system_score_codex":0.00008928295,"about_ca_system_score_gemma":0.00013892559,"threshold_uncertainty_score":0.6142943},"labels":[],"label_agreement":null},{"id":"W2008313390","doi":"10.1074/jbc.m113.466334","title":"The Size of the Unbranched Aliphatic Chain Determines the Immunomodulatory Potency of Short and Long Chain n-Alkanols","year":2013,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"NFAT; Chemistry; Potency; Alcohol; Homologous series; Ethanol; Cytokine; Transcription factor; Stereochemistry; Biochemistry; Cell biology; In vitro; Biology; Gene; Immunology; Organic chemistry","score_opus":0.00880549144520297,"score_gpt":0.21276746749991152,"score_spread":0.20396197605470856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008313390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98934203,0.009365446,0.000012612048,0.0008571651,0.0001518256,0.0001499854,0.000001928622,0.000002985796,0.000116014635],"genre_scores_gemma":[0.99867105,0.00066022814,0.000009324045,0.000062107305,0.00004493565,0.000006539195,0.0000012164471,0.000004466143,0.00054012705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987386,0.00026724997,0.0006690788,0.000087872206,0.000057645248,0.0001795658],"domain_scores_gemma":[0.9981315,0.00085551856,0.00055614824,0.00027071164,0.0001723825,0.00001375044],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007997116,0.000129658,0.00029839555,0.00001145049,0.00016557048,0.000012264383,0.00046674255,0.00022796207,0.00019473689],"category_scores_gemma":[0.0008283737,0.00004974824,0.00019267958,0.000077873425,0.00072002923,0.00005578866,0.000114117254,0.00031919027,0.0000034674483],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013804591,0.000033115888,0.0046522757,0.000022730957,0.000119973505,9.574018e-7,0.000097430224,0.000001773397,0.98841375,0.000016445785,0.00007985084,0.006423632],"study_design_scores_gemma":[0.0003464256,0.00011253173,0.1805136,0.0000682861,0.000029089508,0.00020885069,0.0002543528,0.000007342659,0.81758666,0.00028775932,0.0005203904,0.00006473019],"about_ca_topic_score_codex":0.000008362613,"about_ca_topic_score_gemma":7.182387e-7,"teacher_disagreement_score":0.17586133,"about_ca_system_score_codex":0.000015341264,"about_ca_system_score_gemma":0.000052143263,"threshold_uncertainty_score":0.26529777},"labels":[],"label_agreement":null},{"id":"W2008508773","doi":"10.1097/00000658-200204000-00014","title":"Alteration of Chemoattractant Receptor Expression Regulates Human Neutrophil Chemotaxis In Vivo","year":2002,"lang":"en","type":"article","venue":"Annals of Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Smith and Nephew","keywords":"Chemotaxis; Receptor; In vivo; Immunology; Interleukin 8; Medicine; Exudate; Cell biology; Inflammation; Biology; Internal medicine; Pathology","score_opus":0.13032349147812883,"score_gpt":0.29248855425220543,"score_spread":0.1621650627740766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008508773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968437,0.0018961722,0.0000023746513,0.00057527487,0.00015915712,0.00008577636,0.0000058045644,0.000014945216,0.00041680862],"genre_scores_gemma":[0.9980479,0.000835608,0.0000117384225,0.00004842558,0.000020641417,0.000006981148,0.000045866156,0.00000931912,0.00097352226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988812,0.00014982253,0.00059612014,0.00014132068,0.000041934072,0.00018961082],"domain_scores_gemma":[0.9991405,0.0002067467,0.00031997322,0.00021604182,0.00010731894,0.000009422161],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004519035,0.000107071566,0.0003357854,0.00023256836,0.000048130845,0.0000039017727,0.00007640169,0.00017357277,0.0015584397],"category_scores_gemma":[0.0001251039,0.00009914457,0.00012445486,0.00014637,0.00008958669,0.00020550298,0.000023636,0.00010354256,0.00003888954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014939942,0.00015493837,0.0016371505,0.000043492957,0.000021307718,0.0000010692737,0.00032697612,0.0000047463855,0.9801361,0.000064225125,0.014434866,0.0030257097],"study_design_scores_gemma":[0.00020178236,0.000045955745,0.010548863,0.00019626798,0.0000030811495,0.000003624731,0.000033920944,0.0000063962143,0.98344445,0.000050964743,0.0053739273,0.00009076394],"about_ca_topic_score_codex":0.000034350935,"about_ca_topic_score_gemma":0.0000010549765,"teacher_disagreement_score":0.009060939,"about_ca_system_score_codex":0.0000068679146,"about_ca_system_score_gemma":0.000011923973,"threshold_uncertainty_score":0.99935424},"labels":[],"label_agreement":null},{"id":"W2008680963","doi":"10.1038/labinvest.3700366","title":"Lipopolysaccharide signaling in endothelial cells","year":2005,"lang":"en","type":"review","venue":"Laboratory Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":613,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"TLR4; Cell biology; CD14; Toll-like receptor; Innate immune system; Signal transduction; Proinflammatory cytokine; Lipopolysaccharide; Receptor; Biology; Signal transducing adaptor protein; Inflammation; Pattern recognition receptor; Tumor necrosis factor alpha; Immunology; Immune system; Biochemistry","score_opus":0.028408714071492355,"score_gpt":0.281005791088546,"score_spread":0.25259707701705364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008680963","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0017886028,0.9963454,0.000007884703,0.000026273861,0.00096321263,0.0005698596,0.00009510992,0.00009795726,0.000105682266],"genre_scores_gemma":[0.00017756429,0.99794775,0.00011449053,0.00012039399,0.00023504387,0.0001386968,0.0005857752,0.000054884335,0.0006253781],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99732274,0.0009612697,0.0009316741,0.00038214852,0.00005597953,0.00034619137],"domain_scores_gemma":[0.9987946,0.00023124026,0.0005236449,0.0003463087,0.000077111996,0.000027050693],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00062268705,0.0003882722,0.000938982,0.00048910844,0.00010316496,0.000035342855,0.00026425155,0.0008575628,0.0003213208],"category_scores_gemma":[0.00013280415,0.00036389794,0.00016483097,0.00040918484,0.00014178744,0.00027501874,0.000044182463,0.0007169495,0.002056177],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026207628,0.00004326212,0.0000067985497,0.0021352447,0.00014779948,0.000011921972,0.00054547086,0.00001793555,0.26705265,0.0011924875,0.0010944883,0.72772574],"study_design_scores_gemma":[0.0002838734,0.000025281068,0.0000010552478,0.0028682984,0.000146074,0.000007430826,0.000024721208,0.0000013768733,0.10051588,0.000028532455,0.89577633,0.00032116074],"about_ca_topic_score_codex":0.000032486016,"about_ca_topic_score_gemma":0.000017004539,"teacher_disagreement_score":0.8946818,"about_ca_system_score_codex":0.00022416409,"about_ca_system_score_gemma":0.00075638696,"threshold_uncertainty_score":0.9998813},"labels":[],"label_agreement":null},{"id":"W2008793028","doi":"10.1007/s11095-008-9571-x","title":"Discovery and Development of Toll-Like Receptor 4 (TLR4) Antagonists: A New Paradigm for Treating Sepsis and Other Diseases","year":2008,"lang":"en","type":"review","venue":"Pharmaceutical Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":174,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"TLR4; Sepsis; Lipopolysaccharide; Septic shock; Medicine; Immunology; Toll-like receptor; Receptor; Intensive care; Inflammation; Pharmacology; Intensive care medicine; Immune system; Innate immune system; Internal medicine","score_opus":0.22445297526804314,"score_gpt":0.47696831995546535,"score_spread":0.2525153446874222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008793028","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00090820825,0.99726206,0.00014402444,0.00010771838,0.00012187309,0.0012158823,0.00011551866,0.000019805499,0.00010493499],"genre_scores_gemma":[0.0001388529,0.9963835,0.00032614518,0.000026990583,0.0000688255,0.00023655298,0.0002343151,0.000043170294,0.0025416655],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99747694,0.00070065825,0.00066531496,0.000453611,0.00012180533,0.00058165286],"domain_scores_gemma":[0.99710566,0.0023797045,0.00014362183,0.00021428229,0.00006217053,0.00009456741],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061312184,0.00030123067,0.0009939258,0.00029476182,0.00039593835,0.000052271986,0.00020539082,0.00031719034,0.00014672955],"category_scores_gemma":[0.00043944412,0.0002285136,0.00015938375,0.00018649618,0.00052008894,0.00013087108,0.00022362983,0.00050859636,0.00007027956],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005966079,0.00010387082,0.000033901306,0.005209607,0.000533195,0.0000028292893,0.00037111784,1.7877985e-8,0.0013409429,0.00038689355,0.004211776,0.98720926],"study_design_scores_gemma":[0.00094320375,0.00010566829,0.00001016767,0.0020414782,0.00014726743,0.000053089512,0.00005895705,0.0000023550986,0.004123216,0.000032869437,0.99225384,0.00022791214],"about_ca_topic_score_codex":0.000022142998,"about_ca_topic_score_gemma":0.000002217059,"teacher_disagreement_score":0.98804206,"about_ca_system_score_codex":0.000111897796,"about_ca_system_score_gemma":0.001068984,"threshold_uncertainty_score":0.9318514},"labels":[],"label_agreement":null},{"id":"W2008944418","doi":"10.1016/s0301-0082(02)00010-2","title":"Involvement of inflammatory cytokines in central nervous system injury","year":2002,"lang":"en","type":"review","venue":"Progress in Neurobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":247,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Central nervous system; Tumor necrosis factor alpha; Proinflammatory cytokine; Neuroscience; Inflammation; Immunology; Interleukin; Cytokine; Medicine; Biology","score_opus":0.024450152779782408,"score_gpt":0.27920278704621326,"score_spread":0.25475263426643086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2008944418","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013900834,0.98291093,7.5920616e-7,0.000014839516,0.0015647348,0.0013737346,0.000040356423,0.00007341086,0.00012038795],"genre_scores_gemma":[0.013132961,0.98577225,0.0000112625485,0.000012631114,0.000054378957,0.0004883352,0.00035183405,0.000056438264,0.000119933786],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99456745,0.0020082965,0.0019723587,0.000599851,0.000041967705,0.0008100815],"domain_scores_gemma":[0.9980811,0.00026942816,0.0009912209,0.0005827476,0.000054322412,0.000021186634],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004942664,0.00056691904,0.002298563,0.0010363675,0.000043730077,0.000009397543,0.0006348896,0.0011930737,0.00009431838],"category_scores_gemma":[0.00006570054,0.00047836592,0.00033392516,0.00046972322,0.00043697492,0.000085228865,0.00028694957,0.0009267235,0.00017274571],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018970812,0.00021349174,0.0030345395,0.01729135,0.00018282914,0.00009369537,0.00020967159,0.000002345131,0.00022556422,0.0008072627,0.00020516572,0.97754437],"study_design_scores_gemma":[0.00093674887,0.00040629282,0.0014851739,0.012585139,0.00016372562,0.00020150971,0.000044289616,0.0000036805964,0.00075393525,0.0000069540883,0.98285526,0.00055726577],"about_ca_topic_score_codex":0.000022426551,"about_ca_topic_score_gemma":0.000023239285,"teacher_disagreement_score":0.9826501,"about_ca_system_score_codex":0.00023410168,"about_ca_system_score_gemma":0.00018228072,"threshold_uncertainty_score":0.9997668},"labels":[],"label_agreement":null},{"id":"W2009202501","doi":"10.1016/j.immuni.2009.03.020","title":"A Central Nervous System-Restricted Isoform of the Interleukin-1 Receptor Accessory Protein Modulates Neuronal Responses to Interleukin-1","year":2009,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":140,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"National Institute of Neurological Disorders and Stroke","keywords":"Biology; Gene isoform; Receptor; Interleukin-1 receptor; Central nervous system; Interleukin; Interleukin 1β; Neuroscience; Interleukin 15; Cell biology; Nervous system; Interleukin 4; Immunology; Cytokine; Gene; Genetics","score_opus":0.011410298032981431,"score_gpt":0.23385413738079536,"score_spread":0.22244383934781392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009202501","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640316,0.00032727682,0.000077846315,0.0010096836,0.0007205491,0.0008208883,0.0000349547,0.00012341399,0.0004822475],"genre_scores_gemma":[0.99689484,0.00000683128,0.00004463013,0.00015167463,0.000030539966,0.000035785677,0.00004560378,0.000016877175,0.002773213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974213,0.0011324902,0.00064533274,0.00022729907,0.00008655205,0.0004870142],"domain_scores_gemma":[0.9985437,0.00016949193,0.00030799434,0.0007700325,0.00017554092,0.000033287415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003632846,0.00025512167,0.00035406463,0.00022279558,0.00031063607,0.00003677989,0.00090508716,0.00023416821,0.0001454979],"category_scores_gemma":[0.00056676223,0.00018607131,0.00019587704,0.00041502088,0.00015865613,0.00022218541,0.00024479523,0.00056510145,0.00014298987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030436087,0.00014410369,0.0003365373,0.00003497107,0.00007580579,0.0000016919936,0.0014098441,0.00002013694,0.98277307,0.00047413466,0.00081835105,0.010867769],"study_design_scores_gemma":[0.00066359976,0.00060854224,0.26022232,0.00027522517,0.000024103405,0.000037185702,0.0005419065,0.000012430573,0.7327377,0.00003961604,0.004658206,0.00017914294],"about_ca_topic_score_codex":0.000557379,"about_ca_topic_score_gemma":0.000025819456,"teacher_disagreement_score":0.2598858,"about_ca_system_score_codex":0.00017441115,"about_ca_system_score_gemma":0.0001880095,"threshold_uncertainty_score":0.7587768},"labels":[],"label_agreement":null},{"id":"W2009299676","doi":"10.1164/rccm.200606-824oc","title":"CD14 Facilitates Invasive Respiratory Tract Infection by <i>Streptococcus pneumoniae</i>","year":2006,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Streptococcus pneumoniae; Bronchoalveolar lavage; CD14; Immunology; Pneumonia; Medicine; Microbiology; Lung; Chemokine; Inflammation; Respiratory tract; Biology; Immune system; Respiratory system; Antibiotics; Internal medicine","score_opus":0.009759476141448347,"score_gpt":0.26748401331858157,"score_spread":0.25772453717713323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009299676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97170895,0.026154682,0.00017092541,0.0008858002,0.00036514964,0.00011206481,0.000013606296,0.000024358453,0.0005644463],"genre_scores_gemma":[0.9984981,0.000102986734,0.000007208161,0.0010951592,0.00021361378,0.000008551457,0.000014521184,0.000014578255,0.000045302066],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979441,0.00064958585,0.00076491025,0.00020915674,0.00012534014,0.00030689308],"domain_scores_gemma":[0.9981007,0.0008640906,0.00032711253,0.00016557652,0.00046833517,0.00007421074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006098997,0.00022067533,0.00053687644,0.00022221793,0.00020041765,0.000016202168,0.00011722094,0.00013197806,0.00013634702],"category_scores_gemma":[0.0009611518,0.00016856076,0.0001097922,0.00021399328,0.0016806119,0.0002523783,0.000025032581,0.0005268696,0.00002319828],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030467057,0.00010220372,0.05234203,0.0000876044,0.00005081017,0.00007717418,0.00062116765,0.0000026314485,0.8886876,0.00034421982,0.0054126647,0.051967215],"study_design_scores_gemma":[0.005157659,0.026073322,0.14177139,0.00053892506,0.0004738708,0.00052310247,0.012110843,4.951611e-7,0.33466762,0.0006455008,0.47732347,0.0007137838],"about_ca_topic_score_codex":0.000104205144,"about_ca_topic_score_gemma":0.000011540023,"teacher_disagreement_score":0.55402,"about_ca_system_score_codex":0.00006403504,"about_ca_system_score_gemma":0.00013490762,"threshold_uncertainty_score":0.68737084},"labels":[],"label_agreement":null},{"id":"W2009389373","doi":"10.1016/s0168-3659(02)00275-4","title":"Enhancement of immune responses by co-delivery of a CpG oligodeoxynucleotide and tetanus toxoid in biodegradable nanospheres","year":2002,"lang":"en","type":"article","venue":"Journal of Controlled Release","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":178,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Toxoid; CpG Oligodeoxynucleotide; CpG site; Antigen; Tetanus; Immune system; Molecular biology; Chemistry; In vivo; Adjuvant; T cell; Immunology; Biology; Immunization; Biochemistry; Vaccination","score_opus":0.007323197279280742,"score_gpt":0.21485850824718455,"score_spread":0.2075353109679038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009389373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9084817,0.09026186,0.000037924357,0.00030215594,0.00013155909,0.00022914216,0.000009924489,0.0000036528338,0.0005420816],"genre_scores_gemma":[0.98959625,0.007154397,0.00006519504,0.000041629337,0.000010348429,0.000007111866,0.000002971874,0.000009623153,0.0031124905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99764335,0.00054867915,0.0013914705,0.00010750275,0.000092503295,0.00021647703],"domain_scores_gemma":[0.9978953,0.0005670806,0.001131302,0.00017551136,0.00020477988,0.00002604526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008241018,0.00015859173,0.0009081898,0.00026159236,0.000052930798,0.000008154711,0.0001585044,0.00015668328,0.00071580353],"category_scores_gemma":[0.00048226496,0.000119733835,0.00022336973,0.00012687467,0.00017904017,0.0001738955,0.000024829069,0.00022893473,0.000017252458],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.021688333,0.00039262275,0.0003355871,0.000036400343,0.00037583098,0.000022060447,0.00029463958,0.000008251647,0.96786785,0.000044715965,0.0036457519,0.005287947],"study_design_scores_gemma":[0.022067588,0.0013163106,0.00091217656,0.0002527199,0.00012381944,0.000101147554,0.00033429076,0.00006615819,0.9679271,0.000041078576,0.0067314827,0.00012614409],"about_ca_topic_score_codex":0.00008352176,"about_ca_topic_score_gemma":0.0000048285774,"teacher_disagreement_score":0.083107464,"about_ca_system_score_codex":0.000037038677,"about_ca_system_score_gemma":0.000080067635,"threshold_uncertainty_score":0.78375465},"labels":[],"label_agreement":null},{"id":"W2009421264","doi":"10.1111/j.1574-695x.2002.tb00551.x","title":"Parenteral and mucosal prime-boost immunization strategies in mice with hepatitis B surface antigen and CpG DNA","year":2002,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Honeywell (Canada)","funders":"","keywords":"Adjuvant; Immune system; CpG Oligodeoxynucleotide; Immunology; Cholera toxin; Antigen; Medicine; HBsAg; Nasal administration; Immunization; Biology; Hepatitis B virus; Internal medicine","score_opus":0.005991142565279369,"score_gpt":0.20607085113015955,"score_spread":0.2000797085648802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009421264","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9747441,0.02214874,0.0002933273,0.0016106094,0.00048562055,0.00034583264,0.00002154237,0.00008859762,0.0002616701],"genre_scores_gemma":[0.9912593,0.0074459002,0.00010074739,0.00026605034,0.00002439249,0.00002839098,0.0004042766,0.000029129425,0.0004418176],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972143,0.00087034167,0.0006276544,0.0005515051,0.0000385422,0.0006976258],"domain_scores_gemma":[0.9990223,0.00034674,0.00021417734,0.00029285677,0.00008106627,0.00004284133],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00042266163,0.00036664962,0.0006249352,0.0002305057,0.00023873457,0.000033482367,0.00030903498,0.0009737296,0.0011837352],"category_scores_gemma":[0.00017106363,0.0003084861,0.00004294623,0.00022120889,0.0016997834,0.00026813845,0.00024337789,0.00078748015,0.00019602866],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005087414,0.00016211566,0.030567987,0.000023435347,0.00029128566,0.00005715501,0.0015779053,0.0000018648619,0.95794857,0.00082511926,0.00045030523,0.0075855087],"study_design_scores_gemma":[0.020442445,0.0041357926,0.5287512,0.00074546755,0.00017287038,0.012846682,0.0034980893,0.00022558977,0.36109352,0.0005132006,0.065538086,0.0020370625],"about_ca_topic_score_codex":0.00091481186,"about_ca_topic_score_gemma":0.00055378454,"teacher_disagreement_score":0.59685504,"about_ca_system_score_codex":0.00005482202,"about_ca_system_score_gemma":0.00011240626,"threshold_uncertainty_score":0.9999367},"labels":[],"label_agreement":null},{"id":"W2009483851","doi":"10.1159/000162496","title":"Cells Involved in Cell-Mediated and Transplantation Immunity in the Rabbit","year":2008,"lang":"en","type":"article","venue":"Pathologia et Microbiologia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Immunity; Humoral immunity; Immunology; Transplantation; Immune system; Biology; Delayed hypersensitivity; Cell mediated immunity; Antigen; Cellular immunity; Cell biology; Medicine; Internal medicine","score_opus":0.015703424839172538,"score_gpt":0.22139261295925547,"score_spread":0.20568918812008294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2009483851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99679244,0.0018410702,0.000046404333,0.00021308221,0.00016447186,0.00043144345,0.000025414189,0.000048545204,0.0004371503],"genre_scores_gemma":[0.99564826,0.0029303667,0.00009037454,0.0005430878,0.0000047094454,0.00004876112,0.0006154821,0.000009570301,0.00010939711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99704707,0.0018314801,0.0004412785,0.00028702445,0.00002142569,0.00037173514],"domain_scores_gemma":[0.99890065,0.0006683907,0.00012921133,0.00026320707,0.000030309948,0.000008256191],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013876437,0.00021575046,0.0002890178,0.00022471884,0.00015316255,0.00001175614,0.000286485,0.00042726958,0.0000543454],"category_scores_gemma":[0.000111274894,0.00015125058,0.00005228016,0.0002863282,0.00035846845,0.00013100404,0.00005342288,0.0006897732,0.00022423829],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027142823,0.00012802564,0.020088332,0.000020168683,0.000006313993,0.000107265936,0.0055852644,0.0000116154915,0.97328144,0.000029890416,0.00031648634,0.00015376766],"study_design_scores_gemma":[0.0020953931,0.00018355007,0.46517563,0.00002779079,0.000010154535,0.00033138122,0.001138771,0.0000033944107,0.5301735,0.000033629512,0.00061000127,0.00021681616],"about_ca_topic_score_codex":0.00023500298,"about_ca_topic_score_gemma":0.00015983843,"teacher_disagreement_score":0.44508728,"about_ca_system_score_codex":0.000034563203,"about_ca_system_score_gemma":0.000059252303,"threshold_uncertainty_score":0.61678195},"labels":[],"label_agreement":null},{"id":"W2010094069","doi":"10.1016/j.vaccine.2005.08.076","title":"DNA vaccines in sheep: CTLA-4 mediated targeting and CpG motifs enhance immunogenicity in a DNA prime/protein boost strategy","year":2005,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Australian Research Council; Monash University; Australian Government","keywords":"Immune system; Biology; Immunogenicity; Immunology; DNA vaccination; Antigen; Adjuvant; CpG site; Cytotoxic T cell; Vaccination; Antibody; DNA methylation; Immunization; Genetics; In vitro; Gene","score_opus":0.005450381727542376,"score_gpt":0.22512199236332556,"score_spread":0.2196716106357832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010094069","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98662806,0.011433513,0.00003266515,0.001040832,0.000095857235,0.00047278858,0.000006362484,0.00006515447,0.00022476564],"genre_scores_gemma":[0.9982415,0.00043134872,0.000057307592,0.0000820623,0.000051153256,0.000065454406,0.00015163962,0.000022791122,0.0008967528],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980476,0.000308894,0.00072227005,0.00037809016,0.000041030256,0.00050214276],"domain_scores_gemma":[0.9993256,0.00013955901,0.00018110128,0.00026544774,0.0000661635,0.000022183887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068906945,0.0002621356,0.00042118566,0.00031718487,0.0001061437,0.000022252745,0.00019751208,0.00031156576,0.0006461348],"category_scores_gemma":[0.00034136532,0.00024293382,0.000048336955,0.00037118155,0.00001871063,0.0003472712,0.00010607566,0.00040939215,0.0002525869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007741088,0.0001188518,0.0033152197,0.000020447595,0.00003899106,0.000008656321,0.0004069954,0.000028568385,0.9851493,0.000068942754,0.00020380475,0.0098661175],"study_design_scores_gemma":[0.003275984,0.00015208765,0.085778944,0.000099084755,0.00001055335,0.000021361271,0.00015344373,0.00016975461,0.9057724,0.00006586798,0.004234886,0.00026561358],"about_ca_topic_score_codex":0.00051791436,"about_ca_topic_score_gemma":0.0006578537,"teacher_disagreement_score":0.08246373,"about_ca_system_score_codex":0.00008578187,"about_ca_system_score_gemma":0.00009206561,"threshold_uncertainty_score":0.99065536},"labels":[],"label_agreement":null},{"id":"W2010264338","doi":"10.1006/cyto.1999.0656","title":"PRODUCTION OF TUMOUR NECROSIS FACTOR α BY PRIMARY CULTURED RAT ALVEOLAR EPITHELIAL CELLS","year":2000,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":77,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Mount Sinai Hospital; Toronto General Hospital; University of Toronto; SickKids Foundation; Hospital for Sick Children; St. Michael's Hospital","funders":"Alliance for Cancer Gene Therapy","keywords":"Tumor necrosis factor alpha; Cycloheximide; Biology; Cytokine; Molecular biology; Cytokeratin; A549 cell; Inflammation; Necrosis; Cell biology; Immunology; Cell; Protein biosynthesis; Immunohistochemistry","score_opus":0.006005870952032982,"score_gpt":0.20212904941114987,"score_spread":0.1961231784591169,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010264338","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660206,0.0012352751,0.00002824193,0.0003235319,0.00072880293,0.00023713711,0.00006681939,0.00005541001,0.00072273606],"genre_scores_gemma":[0.96167254,0.00039886404,0.000073386866,0.00009152511,0.000071736154,0.000014003706,0.000474618,0.00001616977,0.037187144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910426,0.00014568349,0.00030146597,0.00020471435,0.000038695733,0.00020515845],"domain_scores_gemma":[0.9995747,0.000024242629,0.00011068235,0.00021697744,0.00006149489,0.000011857005],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012110898,0.00014128238,0.00023899149,0.000051421684,0.00010295731,0.000007802721,0.00012563367,0.00018036467,0.0020255551],"category_scores_gemma":[0.00002732524,0.00011769533,0.000091084,0.00010273178,0.000104770406,0.00015954558,0.000018793087,0.00015576908,0.00074269925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055808853,0.00009535773,0.000032255353,0.00002009083,0.000050864357,4.7659162e-7,0.00034174864,0.0000065756153,0.9614846,0.000010716758,0.027955245,0.009443978],"study_design_scores_gemma":[0.0005921262,0.00010250819,0.0023328995,0.000015423531,0.000022085382,0.000010901492,0.000016724634,3.99541e-7,0.79180247,0.000017278271,0.20498426,0.000102915714],"about_ca_topic_score_codex":0.000035761546,"about_ca_topic_score_gemma":0.0000011305184,"teacher_disagreement_score":0.17702901,"about_ca_system_score_codex":0.000034361317,"about_ca_system_score_gemma":0.000034064375,"threshold_uncertainty_score":0.9988867},"labels":[],"label_agreement":null},{"id":"W2010295052","doi":"10.1159/000225990","title":"Toll-Like Receptor 2-Independent and MyD88-Dependent Gene Expression in the Mouse Brain","year":2009,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Alzheimer Society","keywords":"TLR2; Innate immune system; Biology; TLR4; Toll-like receptor; Receptor; CD14; Microglia; Immune receptor; Chemokine; Immune system; Signal transduction; Cell biology; Lipopolysaccharide; Molecular biology; Immunology; Inflammation; Genetics","score_opus":0.01085492468172179,"score_gpt":0.24544881368186375,"score_spread":0.23459388900014197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010295052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99329877,0.0034217767,0.00009337085,0.0024952882,0.00031589242,0.00014584529,0.000002854447,0.000008819884,0.00021738728],"genre_scores_gemma":[0.9976615,0.0008595311,0.00010376322,0.00067982834,0.00003545577,0.0000021315268,0.000015086948,0.000006910484,0.0006358359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99775726,0.0011786189,0.00063616177,0.00009557251,0.00010280568,0.00022961116],"domain_scores_gemma":[0.9989801,0.00022069536,0.000403613,0.00027247457,0.00010452697,0.000018563438],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024752035,0.00014762022,0.00026800862,0.00022943108,0.00020174841,0.0000413591,0.0003964208,0.00020254328,0.000112068825],"category_scores_gemma":[0.00023274685,0.00009527463,0.0000862342,0.00011537313,0.00006606069,0.0003139387,0.000061511986,0.00091786607,0.000032145344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084391405,0.00018528987,0.00024849028,0.0000042908136,0.000031902873,0.00002018784,0.002342168,0.00001048616,0.9854988,0.000044401422,0.002739026,0.008031085],"study_design_scores_gemma":[0.0023670404,0.00066917454,0.034683403,0.00007411445,0.000015559623,0.0008070367,0.0017782517,0.000001930746,0.946382,0.0002049629,0.012871733,0.00014482789],"about_ca_topic_score_codex":0.000029883087,"about_ca_topic_score_gemma":0.000007879808,"teacher_disagreement_score":0.039116792,"about_ca_system_score_codex":0.00006372571,"about_ca_system_score_gemma":0.00006550101,"threshold_uncertainty_score":0.39877224},"labels":[],"label_agreement":null},{"id":"W2010597203","doi":"10.1097/shk.0b013e3181f21d2d","title":"Altered Inhibitory κB Alpha Expression in LPS-Stimulated Alveolar Macrophages Following Resuscitated Hemorrhagic Shock","year":2010,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Chemokine; Cytokine; Immunology; IκBα; Immune system; Alveolar macrophage; Interleukin 10; In vivo; ARDS; NF-κB; Medicine; Biology; Macrophage; Pharmacology; Chemistry; Lung; In vitro; Inflammation; Internal medicine","score_opus":0.006710196687097068,"score_gpt":0.24019137900030688,"score_spread":0.2334811823132098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010597203","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99349135,0.0016302826,0.000096687785,0.00022060522,0.0031483767,0.0003620179,0.0000075091816,0.00017331936,0.00086983474],"genre_scores_gemma":[0.9964012,0.000027738752,0.00033607124,0.00011180444,0.000094287454,0.000018951136,0.00025914217,0.000039194794,0.0027116137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99795747,0.00036447716,0.0005873976,0.00044143165,0.00007843987,0.00057078135],"domain_scores_gemma":[0.9990401,0.00019377966,0.00014949674,0.00051245454,0.00006687757,0.00003729379],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005450158,0.00029154593,0.00037637202,0.00032796917,0.00024391706,0.000035513145,0.00031149908,0.00056556304,0.0006705147],"category_scores_gemma":[0.00027511435,0.00026767675,0.00017417945,0.00030460084,0.00010180921,0.00032593898,0.00014358958,0.00088931527,0.0009466932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005075972,0.00007264552,0.0012066446,0.000017622955,0.00005038892,0.000060572238,0.0005752759,0.000039602724,0.9917275,0.00001879854,0.0026699353,0.003053437],"study_design_scores_gemma":[0.0029394499,0.00011172349,0.008579133,0.00011993897,0.000027140331,0.00003848546,0.00019065983,0.00019293967,0.9724219,0.00015096206,0.014888818,0.000338843],"about_ca_topic_score_codex":0.00008197712,"about_ca_topic_score_gemma":0.000055478733,"teacher_disagreement_score":0.019305574,"about_ca_system_score_codex":0.000059980437,"about_ca_system_score_gemma":0.00009880006,"threshold_uncertainty_score":0.9999775},"labels":[],"label_agreement":null},{"id":"W2010603109","doi":"10.1371/journal.ppat.1003539","title":"SIGIRR, a Negative Regulator of TLR/IL-1R Signalling Promotes Microbiota Dependent Resistance to Colonization by Enteric Bacterial Pathogens","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia; BC Children's Hospital","funders":"National Institutes of Health; Canadian Institutes of Health Research; CH.I.L.D. Foundation; Child and Family Research Institute; Crohn's and Colitis Foundation of Canada; University of British Columbia; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation","keywords":"Citrobacter rodentium; Biology; Innate immune system; Microbiology; Colonisation resistance; Pathogen; Salmonella; Immunology; Immune system; Bacteria; Colonization","score_opus":0.008037445887869012,"score_gpt":0.19672232733537598,"score_spread":0.18868488144750697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010603109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964059,0.0004561987,0.0006723484,0.00032205923,0.00030323968,0.0012475456,0.00040800043,0.00007235438,0.00011237506],"genre_scores_gemma":[0.99558306,0.000044870132,0.00096260296,0.00008570249,0.000048051636,0.00015528515,0.00049764215,0.000041530908,0.002581282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979677,0.00042835766,0.00064528186,0.00043103285,0.000085591346,0.00044201856],"domain_scores_gemma":[0.99869627,0.00016586146,0.0003614756,0.00035708694,0.00037229317,0.000046994006],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00022532008,0.00027876647,0.00042660776,0.00016091552,0.00018945136,0.000042169046,0.00026121456,0.00028697253,0.0008330316],"category_scores_gemma":[0.00030738235,0.0002677231,0.00011079233,0.0002789397,0.00010494112,0.00020488397,0.000110010755,0.00015885338,0.00066267076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004532446,0.00021593679,0.0002886657,0.000056627076,0.0001671343,0.0000030209949,0.0014144916,0.0000056789354,0.9944356,0.000033441327,0.0023596229,0.00056650914],"study_design_scores_gemma":[0.0008300508,0.00030214357,0.0026521306,0.00015042788,0.000075669894,0.000009385339,0.00018162465,0.000015472573,0.992804,0.000050811555,0.0026456127,0.00028270943],"about_ca_topic_score_codex":0.00003071082,"about_ca_topic_score_gemma":0.00002058434,"teacher_disagreement_score":0.0024689068,"about_ca_system_score_codex":0.0001003232,"about_ca_system_score_gemma":0.00008981996,"threshold_uncertainty_score":0.99997747},"labels":[],"label_agreement":null},{"id":"W2010792112","doi":"10.1016/j.cellimm.2003.11.007","title":"Skin immune responses to peptide and protein antigen are TLR4 independent","year":2003,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's & Women's Health Centre of British Columbia; BC Research (Canada); Women's Health Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; Galderma; Michael Smith Health Research BC; Arthritis Society","keywords":"Biology; Immune system; Cholera toxin; TLR4; Antigen; T cell; Acquired immune system; Immunology; CD8; Toll-like receptor; Innate immune system; Microbiology","score_opus":0.008482010686734901,"score_gpt":0.21072766749251742,"score_spread":0.20224565680578252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010792112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97582686,0.01981277,0.0005160239,0.000634557,0.000585821,0.00076234207,0.0000069789894,0.00010518235,0.0017494416],"genre_scores_gemma":[0.97582686,0.00022958427,0.000210145,0.00012831605,0.000018680603,0.00011302233,0.00005075344,0.000040755942,0.023381885],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969931,0.0012016073,0.000567952,0.00050829933,0.000057187262,0.0006718461],"domain_scores_gemma":[0.9988232,0.0001376983,0.00023027211,0.0006749139,0.00009628039,0.00003761841],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00082004117,0.00033229246,0.0004978343,0.0003953249,0.0003749766,0.000037165035,0.00030740272,0.00052255165,0.0006997513],"category_scores_gemma":[0.0005255297,0.00032371221,0.00011609743,0.00024442933,0.00028723737,0.0001446069,0.00018808596,0.0004831761,0.0020973051],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011264898,0.00008836758,0.0009508015,0.000014898032,0.00022103848,0.00004288133,0.0006721252,0.0000013267592,0.99137366,0.0037501403,0.00033415548,0.0014241347],"study_design_scores_gemma":[0.0011485325,0.00029226855,0.031182453,0.00004864389,0.000019224259,0.00020014831,0.0006705155,4.2834543e-7,0.74628353,0.0002553379,0.21959974,0.0002991969],"about_ca_topic_score_codex":0.000085111344,"about_ca_topic_score_gemma":0.000011703304,"teacher_disagreement_score":0.24509013,"about_ca_system_score_codex":0.00007177459,"about_ca_system_score_gemma":0.0001183437,"threshold_uncertainty_score":0.9999215},"labels":[],"label_agreement":null},{"id":"W2010801497","doi":"10.1080/13550280600848399","title":"Expression of Toll-like receptor 3 in the human cerebellar cortex in rabies, herpes simplex encephalitis, and other neurological diseases","year":2006,"lang":"en","type":"article","venue":"Journal of NeuroVirology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Neuroimmunology; Amyotrophic lateral sclerosis; Biology; Encephalitis; Human brain; Immunology; Receptor; Innate immune system; Neuroscience; Rabies; Toll-like receptor; Immune system; Herpes simplex virus; Virology; Medicine; Pathology; Disease; Virus","score_opus":0.010220515945823754,"score_gpt":0.23935270207211742,"score_spread":0.22913218612629366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010801497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99641865,0.0025670882,0.0000072284956,0.0005979887,0.00018530704,0.00011543693,0.0000071372842,0.0000044386375,0.00009669977],"genre_scores_gemma":[0.9990543,0.00017892577,0.000010264904,0.0006054542,0.000045130106,0.0000034485154,0.00000758957,0.000007761205,0.00008712019],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976812,0.0012688658,0.0006491185,0.0001379351,0.000052040003,0.00021081523],"domain_scores_gemma":[0.9990294,0.0004000312,0.00038896923,0.00014081418,0.000030045172,0.000010759468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003812897,0.000120752695,0.00034154687,0.00019868802,0.00005959829,0.000007826853,0.00022323996,0.00018449817,0.00017635351],"category_scores_gemma":[0.00010217055,0.000078811245,0.00006955967,0.00009529218,0.00027431455,0.00009390585,0.00004822633,0.0003149664,0.0000046192995],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009828144,0.00028514545,0.058915626,0.0000120187415,0.0000074545055,0.00008504279,0.00024058005,0.00002514645,0.93538415,0.00042284426,0.0017439266,0.0018952227],"study_design_scores_gemma":[0.0022896042,0.0011656506,0.8777209,0.000025292415,0.000023262975,0.00050412805,0.00014456554,0.0000047571534,0.013221314,0.00065008237,0.10415101,0.000099417055],"about_ca_topic_score_codex":0.000081023754,"about_ca_topic_score_gemma":0.00003835013,"teacher_disagreement_score":0.9221629,"about_ca_system_score_codex":0.000007899882,"about_ca_system_score_gemma":0.000028278972,"threshold_uncertainty_score":0.32138294},"labels":[],"label_agreement":null},{"id":"W2010827041","doi":"10.1371/journal.pone.0040044","title":"T-Lymphocytes Enable Osteoblast Maturation via IL-17F during the Early Phase of Fracture Repair","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":176,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; SickKids Foundation; Sunnybrook Health Science Centre; University of Toronto; Sunnybrook Hospital","funders":"University of Toronto; Canadian Institutes of Health Research; Sunnybrook Research Institute","keywords":"Bone healing; Osteoblast; Bone fracture; Cytokine; Immune system; Stereology; Inflammation; Cell biology; Immunology; Biology; Medicine; Pathology; In vitro; Anatomy","score_opus":0.015512302320917121,"score_gpt":0.21617995663573422,"score_spread":0.2006676543148171,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010827041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961347,0.0028236632,0.00003511061,0.00017550268,0.00010492015,0.0002494843,0.0000075285006,0.00007721318,0.00039185103],"genre_scores_gemma":[0.9970271,0.000075125565,0.00007211306,0.000059010606,0.00009401281,0.000024866253,0.000056328798,0.0000124082735,0.0025790269],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917096,0.0001674279,0.00025824102,0.00009946693,0.000052518553,0.0002513817],"domain_scores_gemma":[0.9993552,0.00010501077,0.00016541491,0.00028399765,0.000078398254,0.000012005432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023693447,0.00010804025,0.00017997411,0.0000610913,0.00018512363,0.000008748202,0.00010666275,0.00016664794,0.0004691706],"category_scores_gemma":[0.00009133471,0.000076431,0.000069775706,0.00009134521,0.00007236737,0.0003235004,0.000038681992,0.00017120848,0.00043754067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00085096236,0.00051643,0.00072491163,0.000059758015,0.0002785046,4.4840579e-7,0.0014758911,0.0000016058503,0.9955608,0.000040714098,0.00019910143,0.00029083923],"study_design_scores_gemma":[0.0011461093,0.00014331176,0.013911472,0.00006392467,0.0000918351,0.000011644877,0.00012538739,0.000011312648,0.98156685,0.00001730828,0.0028217733,0.00008907302],"about_ca_topic_score_codex":0.000056287827,"about_ca_topic_score_gemma":0.0000021012956,"teacher_disagreement_score":0.013993985,"about_ca_system_score_codex":0.000041359224,"about_ca_system_score_gemma":0.000023495337,"threshold_uncertainty_score":0.5623846},"labels":[],"label_agreement":null},{"id":"W2010943625","doi":"10.1016/j.vetimm.2008.02.007","title":"Attenuated cytokine responses in porcine lymph node cells stimulated with CpG DNA are associated with low frequency of IFNα-producing cells and TLR9 mRNA expression","year":2008,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Canada Research Chairs","keywords":"TLR9; CpG Oligodeoxynucleotide; Biology; CpG site; Immune system; Peripheral blood mononuclear cell; Spleen; Immunology; Cytokine; Lymph node; Molecular biology; In vitro; DNA methylation; Gene expression; Gene; Biochemistry","score_opus":0.012804844972860666,"score_gpt":0.21760563094525473,"score_spread":0.20480078597239407,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2010943625","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99240273,0.006418036,0.000044697586,0.00015552957,0.0003037226,0.0004621172,0.000058759917,0.00010599851,0.00004842974],"genre_scores_gemma":[0.9974041,0.0015273304,0.00018917034,0.0000783112,0.000010312777,0.000064995584,0.00019533744,0.000057475376,0.00047297037],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959336,0.0015831835,0.0008874662,0.00077628763,0.00007377054,0.0007456787],"domain_scores_gemma":[0.997877,0.00045264,0.00072807656,0.0006832913,0.00022786463,0.000031133386],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000635175,0.00055236754,0.0011085895,0.00067462696,0.00042256602,0.00001074998,0.0002827442,0.0007717616,0.00009725424],"category_scores_gemma":[0.0002004579,0.00044757494,0.000058850976,0.00046994924,0.001693516,0.00034673794,0.00023903682,0.00066791545,0.000024862115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012525821,0.00034889232,0.04429755,0.000057414898,0.00024681533,0.0012082095,0.0017798248,0.00003399432,0.93917596,0.000009111372,0.00001886394,0.00029754415],"study_design_scores_gemma":[0.005818686,0.0028609145,0.4465782,0.0004911329,0.000056142762,0.004332261,0.00035734545,0.000010810367,0.5390527,0.000014628654,0.00005344251,0.0003737241],"about_ca_topic_score_codex":0.00017651342,"about_ca_topic_score_gemma":0.000010095688,"teacher_disagreement_score":0.40228066,"about_ca_system_score_codex":0.00008114567,"about_ca_system_score_gemma":0.00015587683,"threshold_uncertainty_score":0.9997976},"labels":[],"label_agreement":null},{"id":"W2011090966","doi":"10.1016/j.virol.2009.08.001","title":"Induction of innate host responses in the lungs of chickens following infection with a very virulent strain of Marek's disease virus","year":2009,"lang":"en","type":"article","venue":"Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Poultry Industry Council","keywords":"Biology; Innate immune system; Virology; Virus; Virulence; Viral replication; Marek's disease; Gene; Host (biology); Immunology; Microbiology; Immune system; Genetics","score_opus":0.009093537858108312,"score_gpt":0.23826263164810663,"score_spread":0.2291690937899983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011090966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99839795,0.0005558321,0.00006220095,0.00047308707,0.00014053154,0.00023844853,0.000020200896,0.000010537624,0.000101209844],"genre_scores_gemma":[0.99968874,0.00010298543,0.000011322417,0.00009921285,0.000008821232,0.000011279139,0.0000410951,0.0000054549064,0.000031065934],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984356,0.0008227077,0.00039129943,0.00013881095,0.00004659283,0.00016495526],"domain_scores_gemma":[0.9992761,0.00017010965,0.00026813077,0.00023492819,0.000042916094,0.00000782379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006643967,0.00011066117,0.0002735686,0.00032334114,0.00004471622,0.0000020312182,0.000107815154,0.00016958726,0.000030333757],"category_scores_gemma":[0.00017280052,0.00007949768,0.0000852809,0.0002538197,0.00018546858,0.00011382928,0.00001858926,0.00020051633,0.0000052917785],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0061968486,0.00021925716,0.0065687895,0.000019633655,0.00007544907,0.00000857413,0.0010392154,0.00002983252,0.98296475,0.0009575965,0.000013740771,0.0019062887],"study_design_scores_gemma":[0.001110303,0.0011709045,0.7793798,0.0000473802,0.000060738956,0.000024598925,0.00012788888,0.0000038517182,0.2173394,0.0002761718,0.00039131715,0.000067667635],"about_ca_topic_score_codex":0.0002172628,"about_ca_topic_score_gemma":0.00006636653,"teacher_disagreement_score":0.772811,"about_ca_system_score_codex":0.000020318806,"about_ca_system_score_gemma":0.00008116328,"threshold_uncertainty_score":0.32418212},"labels":[],"label_agreement":null},{"id":"W2011543125","doi":"10.1097/01.tp.0000332763.95958.cd","title":"REDUCED INSULIN REQUIREMENTS IN TRANSIENTLY IMMUNOSUPPRESSED NON-HUMAN PRIMATES TRANSPLANTED WITH MICROISLET P(tm) (ALGINATE ENCAPSULATED PORCINE ISLETS): A NON CLINICAL SAFETY STUDY","year":2008,"lang":"en","type":"article","venue":"Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Microsemi (Canada)","funders":"","keywords":"Islet; Insulin; Medicine; Immunosuppression; Human insulin; Transplantation; Virology; Immunology; Biology; Endocrinology; Internal medicine","score_opus":0.02055989988868401,"score_gpt":0.30116222702468387,"score_spread":0.28060232713599986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011543125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99598193,0.00021170502,0.0009630516,0.00012101743,0.00024678133,0.0018716985,0.00007537074,0.00011890824,0.0004095062],"genre_scores_gemma":[0.9953487,0.001118138,0.00008360645,0.000047996735,0.000018802904,0.000086479515,0.0030152933,0.000047524332,0.00023343987],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9965162,0.00069896993,0.0014758193,0.0006123811,0.00014307545,0.0005535188],"domain_scores_gemma":[0.99898833,0.00014204069,0.000304453,0.0003953548,0.0001320633,0.000037750524],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008229462,0.00042886936,0.0007083637,0.00040368736,0.00038220326,0.000017887915,0.00030199817,0.00036392736,0.000168288],"category_scores_gemma":[0.00001122063,0.00037784074,0.00012865968,0.0004575501,0.00022829411,0.000442969,0.000009037035,0.00057967467,0.00011926709],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.018536076,0.0013130036,0.014788649,0.00015273425,0.00034406004,0.00038939554,0.0153047955,0.0000848444,0.9485006,0.0000049551845,0.00002510046,0.00055583415],"study_design_scores_gemma":[0.024880808,0.0017160323,0.5465442,0.00035173775,0.00023911767,0.00030785354,0.0004097108,0.000050622595,0.4250576,0.0000038198446,0.000055999306,0.00038250076],"about_ca_topic_score_codex":0.00053659367,"about_ca_topic_score_gemma":0.0000966221,"teacher_disagreement_score":0.53175557,"about_ca_system_score_codex":0.00007875793,"about_ca_system_score_gemma":0.00013092377,"threshold_uncertainty_score":0.9998674},"labels":[],"label_agreement":null},{"id":"W2011546561","doi":"10.1038/nrurol.2013.153","title":"Toll-like receptors in urothelial cells—targets for cancer immunotherapy","year":2013,"lang":"en","type":"review","venue":"Nature Reviews Urology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"","keywords":"Medicine; Urothelial cancer; Immunotherapy; Receptor; Toll; Cancer research; Cancer immunotherapy; Cancer; Oncology; Immunology; Bladder cancer; Internal medicine","score_opus":0.02301731448057547,"score_gpt":0.3288442358235929,"score_spread":0.3058269213430174,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011546561","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000054958696,0.98221064,0.000038930288,0.00021873064,0.0111278575,0.0061154007,0.000047047037,0.0000915013,0.00014441716],"genre_scores_gemma":[0.0000013768299,0.9878607,0.00014413125,0.0008457037,0.00031339668,0.0047212825,0.00063961186,0.00017015252,0.0053036693],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9942307,0.002168406,0.001817719,0.00084568106,0.000049990318,0.000887508],"domain_scores_gemma":[0.99728966,0.00067467993,0.0011166801,0.0007814818,0.00010748961,0.000030024237],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0012433782,0.0008999245,0.0041021537,0.0005821499,0.00011774878,0.000022051232,0.00081583683,0.0046953517,0.0016500887],"category_scores_gemma":[0.0002195227,0.0006505168,0.0012273354,0.0003826013,0.00016198888,0.00012604038,0.00009474127,0.0027093303,0.0017094151],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014200002,0.0000612844,0.0000010839044,0.0037217045,0.00028707724,0.000002356767,0.00005928181,2.7907322e-7,0.0007312425,0.00014539801,0.048805997,0.9460423],"study_design_scores_gemma":[0.00089392456,0.00021063263,9.762637e-7,0.0017902409,0.00039774927,0.00007001573,0.0000025885668,4.442852e-7,0.00020126953,0.000038444636,0.99581295,0.0005807381],"about_ca_topic_score_codex":0.000048321275,"about_ca_topic_score_gemma":0.00004926373,"teacher_disagreement_score":0.947007,"about_ca_system_score_codex":0.0002168332,"about_ca_system_score_gemma":0.0004197024,"threshold_uncertainty_score":0.9995946},"labels":[],"label_agreement":null},{"id":"W2011618490","doi":"10.1097/wnr.0b013e3282f27e60","title":"Expression of cytokines and cytokine receptors in human Schwann cells","year":2008,"lang":"en","type":"article","venue":"Neuroreport","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of British Columbia Hospital","funders":"","keywords":"Cytokine; Biology; Glycoprotein 130; Receptor; Schwann cell; Immunology; Interleukin 6; Cell biology","score_opus":0.015699463900697756,"score_gpt":0.2366712926646979,"score_spread":0.22097182876400015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011618490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99741066,0.00024354592,0.0000044982353,0.00004048124,0.00027120387,0.00011383126,0.0000014893892,0.000026342708,0.0018879734],"genre_scores_gemma":[0.99844015,0.0001364134,0.000027077447,0.000022182403,0.000012387503,0.0000066822818,0.000028509714,0.000009555275,0.0013170736],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999159,0.00010009779,0.00039476404,0.00017477425,0.000032348533,0.00013905758],"domain_scores_gemma":[0.9995454,0.000039055718,0.00017551183,0.00019439687,0.00003642651,0.000009192467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014739601,0.00009652245,0.00019877782,0.0001493076,0.000085073196,0.0000021201963,0.00006672035,0.00011796118,0.00012697087],"category_scores_gemma":[0.00005895887,0.00008467282,0.00003457295,0.000097859775,0.00014836808,0.00010395195,0.000053482745,0.00014426924,0.000018159242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010089294,0.000045574645,0.02023134,0.000010645881,0.0000046587447,0.00005915842,0.00026996832,0.0000023918694,0.97794265,0.000041424326,0.0010313379,0.00025995515],"study_design_scores_gemma":[0.0004827326,0.00010763589,0.07253536,0.000026054377,0.0000037129585,0.00020375954,0.000031362375,3.771894e-7,0.9111898,0.000018216735,0.015330698,0.00007031516],"about_ca_topic_score_codex":0.000047263686,"about_ca_topic_score_gemma":0.000002288051,"teacher_disagreement_score":0.06675287,"about_ca_system_score_codex":0.0000071261366,"about_ca_system_score_gemma":0.00002985079,"threshold_uncertainty_score":0.34528574},"labels":[],"label_agreement":null},{"id":"W2011908570","doi":"10.1080/15287390802241015","title":"<i>In Vitro</i> Production of Tumor Necrosis Factor-Alpha by Human Monocytes Stimulated with Lipopolysaccharide is Positively Correlated with Increased Blood Monocytes After Exposure to a Swine Barn","year":2008,"lang":"en","type":"article","venue":"Journal of Toxicology and Environmental Health","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan; Saskatchewan Health Authority","funders":"","keywords":"Tumor necrosis factor alpha; Lipopolysaccharide; TLR4; Immunology; Monocyte; Barn; In vitro; Inflammation; Monocytosis; Stimulation; Medicine; Biology; Internal medicine; Biochemistry","score_opus":0.0064580207127273885,"score_gpt":0.21633617279684997,"score_spread":0.20987815208412258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2011908570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99629456,0.0025009767,0.000019281635,0.0006882645,0.0000877145,0.0003548479,0.000043787426,0.000007547686,0.0000030082133],"genre_scores_gemma":[0.998508,0.0003746398,0.00015404087,0.0006516163,0.00001638265,0.000012962195,0.000033766606,0.000018225586,0.00023036226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850476,0.00026709423,0.00062351907,0.0002285344,0.00007296143,0.0003031309],"domain_scores_gemma":[0.99918425,0.00006174047,0.0005305043,0.00012604117,0.00002410166,0.00007337285],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000223516,0.00021503214,0.00053008227,0.00021930602,0.00019089029,0.0000045041193,0.00008774963,0.00016472171,0.000115837],"category_scores_gemma":[0.000012914666,0.0001634025,0.00004925891,0.00009680705,0.00026247458,0.00024991223,0.000032501826,0.00038103902,0.0000059963754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012352301,0.00065519084,0.037430253,0.00002375517,0.00022480518,0.000059415546,0.0022131817,0.000033992437,0.9464638,5.652065e-7,0.00017277701,0.0003699254],"study_design_scores_gemma":[0.0035682924,0.0071340376,0.18339467,0.000090065034,0.00006266391,0.0015128546,0.00020882567,0.0000023251491,0.80375385,0.0000027607298,0.00012985675,0.00013980498],"about_ca_topic_score_codex":0.0002867384,"about_ca_topic_score_gemma":0.000021210044,"teacher_disagreement_score":0.14596443,"about_ca_system_score_codex":0.00017380629,"about_ca_system_score_gemma":0.00013239335,"threshold_uncertainty_score":0.666336},"labels":[],"label_agreement":null},{"id":"W2012001629","doi":"10.1074/jbc.m403107200","title":"Transcriptional Mechanisms Regulating Alveolar Epithelial Cell-specific CCL5 Secretion in Pulmonary Tuberculosis","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Secretion; Cell biology; Cell; Pulmonary tuberculosis; Tuberculosis; Epithelium; Biology; Chemistry; Medicine; Pathology; Biochemistry; Genetics","score_opus":0.013115408105459902,"score_gpt":0.21024881979772872,"score_spread":0.1971334116922688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012001629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993665,0.0035964195,0.0014430721,0.0004186303,0.00023274276,0.00006481923,0.0000073754195,0.000015476155,0.00055650016],"genre_scores_gemma":[0.9985609,0.0005458322,0.00054277724,0.000045946865,0.000111604626,0.000003588485,0.00007038343,0.0000075800313,0.000111408655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873286,0.00012777561,0.00065669685,0.00016982791,0.00006889911,0.0002439614],"domain_scores_gemma":[0.99940586,0.000076289754,0.0002933816,0.000106816275,0.00009040574,0.000027242917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006037895,0.00015580616,0.00028770362,0.00006575202,0.00008963804,0.000012319313,0.00018698379,0.00048175806,0.0006562975],"category_scores_gemma":[0.00006762253,0.00011917302,0.00021990814,0.00012052323,0.00010075285,0.00012915315,0.000025579428,0.0005527808,0.000040092164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065387145,0.0001832392,0.00015218886,0.000016442953,0.000028444565,0.00003620191,0.00009857036,0.00012605826,0.99735993,0.0002419468,0.000024475527,0.0010786037],"study_design_scores_gemma":[0.0014644546,0.0001654589,0.006660789,0.00008635122,0.000012337035,0.00066082686,0.00026687497,0.0000038106027,0.98464096,0.0038024376,0.0020897163,0.0001459607],"about_ca_topic_score_codex":0.0000045412503,"about_ca_topic_score_gemma":1.6092946e-7,"teacher_disagreement_score":0.012718974,"about_ca_system_score_codex":0.00013589223,"about_ca_system_score_gemma":0.0000620639,"threshold_uncertainty_score":0.71859974},"labels":[],"label_agreement":null},{"id":"W2012810238","doi":"10.1007/s10753-014-0030-z","title":"Circulating Muramyl Dipeptide Is Negatively Associated with Interleukin-10 in the Frail Elderly","year":2014,"lang":"en","type":"article","venue":"Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Muramyl dipeptide; Immunology; Immune system; Inflammation; Tumor necrosis factor alpha; Medicine; Proinflammatory cytokine; Interleukin; Cytokine","score_opus":0.01101774872618242,"score_gpt":0.22100010617473584,"score_spread":0.20998235744855342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2012810238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925193,0.00004585968,0.0010218818,0.0014047521,0.00009341178,0.00029129974,0.0000019079994,0.00006259786,0.004558994],"genre_scores_gemma":[0.9986096,0.000002537683,0.000024784473,0.00018664158,0.000038446902,0.00004881164,0.00014482744,0.000013250976,0.00093111774],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99839306,0.00067416584,0.000404314,0.0001884559,0.000078432284,0.00026157065],"domain_scores_gemma":[0.99879634,0.00054765644,0.0002884043,0.00024640342,0.000113506,0.000007713745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009843224,0.00016078085,0.00018673616,0.00014043887,0.00018877366,0.00005615379,0.0002098768,0.00019748205,0.0003417396],"category_scores_gemma":[0.0005886835,0.000111462556,0.000052346506,0.00025009597,0.00009217134,0.00033585756,0.000023269884,0.00029866866,0.00038817205],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006637394,0.00011012523,0.008946885,0.000042766023,0.00028483933,0.000015545013,0.03641286,0.0003457106,0.7863733,0.0057285097,0.0025802646,0.15849543],"study_design_scores_gemma":[0.007867936,0.0015595541,0.5593135,0.0007996268,0.00013629404,0.00013954155,0.0041603227,0.0022806772,0.32873848,0.004335011,0.0896027,0.0010663895],"about_ca_topic_score_codex":0.000074235206,"about_ca_topic_score_gemma":0.00017666897,"teacher_disagreement_score":0.5503666,"about_ca_system_score_codex":0.00007495871,"about_ca_system_score_gemma":0.00004057224,"threshold_uncertainty_score":0.49892956},"labels":[],"label_agreement":null},{"id":"W2013105255","doi":"10.1186/cc10622","title":"Oral neutrophil quantitation in patients undergoing elective cardiopulmonary bypass","year":2012,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Health Sciences Centre; Sunnybrook Health Science Centre; University of Toronto","funders":"","keywords":"Medicine; Cardiopulmonary bypass; Oral surgery; Extravasation; Bone marrow; Absolute neutrophil count; Intensive care medicine; Anesthesia; Surgery; Internal medicine; Immunology; Chemotherapy; Neutropenia","score_opus":0.015448701617724403,"score_gpt":0.2801675671173564,"score_spread":0.26471886549963203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013105255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99305815,0.0038455923,0.00007579753,0.00011717155,0.0006295705,0.00013265516,0.0000061743194,0.0000325853,0.0021022968],"genre_scores_gemma":[0.999589,0.000010070587,0.000031360516,0.000075848664,0.00003405283,0.000016808006,0.00018812231,0.000011017576,0.000043718963],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99900836,0.0002990959,0.00018010153,0.00012705798,0.000035384946,0.00034998573],"domain_scores_gemma":[0.9994467,0.00026718935,0.000019897665,0.00011172364,0.00013546176,0.000019020763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011332272,0.00009772493,0.00014902772,0.00009515719,0.00010620601,0.000009502519,0.000059926326,0.00016554866,0.000055964323],"category_scores_gemma":[0.0005427947,0.00009620487,0.00005518445,0.00010743808,0.00007719693,0.00030289296,0.00003306238,0.00019699958,0.00033117915],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014862083,0.00044449625,0.8784898,0.00024541325,0.00009358087,0.000010896149,0.006690325,0.000017389284,0.04950326,0.04661018,0.0008275965,0.015580851],"study_design_scores_gemma":[0.0013390828,0.00035700735,0.9699718,0.000047661117,0.000041765605,0.0000075744297,0.00307101,0.0000027502397,0.022405755,0.00027344856,0.0022629756,0.0002191994],"about_ca_topic_score_codex":0.000024676014,"about_ca_topic_score_gemma":0.00000857938,"teacher_disagreement_score":0.09148197,"about_ca_system_score_codex":0.00012098419,"about_ca_system_score_gemma":0.000036240785,"threshold_uncertainty_score":0.42567486},"labels":[],"label_agreement":null},{"id":"W2013205499","doi":"10.1074/jbc.m402666200","title":"The Role of Interleukin 1 Receptor-associated Kinase-4 (IRAK-4) Kinase Activity in IRAK-4-mediated Signaling","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Kinase; Signal transduction; Interleukin-1 receptor; Chemistry; Cell biology; Biology; Interleukin; Immunology; Cytokine","score_opus":0.01134495705186749,"score_gpt":0.22719104782489183,"score_spread":0.21584609077302433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013205499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99629813,0.0029334552,0.000012589366,0.00025939525,0.00014569232,0.0000674475,0.000008597582,0.00001288752,0.0002618255],"genre_scores_gemma":[0.9994436,0.00037043323,0.00001886601,0.000021597954,0.000039650487,0.000003167862,0.000028518203,0.0000065879576,0.00006759502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985731,0.00026848758,0.00068064634,0.00013057976,0.000062451676,0.00028468194],"domain_scores_gemma":[0.9983981,0.00052398554,0.00075040787,0.00013797185,0.0001629493,0.000026586249],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010118885,0.00015597507,0.00037666474,0.000048171412,0.00009836384,0.000012886867,0.0003272484,0.00046797455,0.00015715101],"category_scores_gemma":[0.0015364338,0.00009610236,0.00019059167,0.000192549,0.00024150466,0.00008134356,0.00006770265,0.00070009247,0.000020869704],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011523509,0.00024928007,0.002049759,0.000008010222,0.00009426065,0.000011537182,0.00012099205,0.000028577626,0.99308246,0.000016468122,0.000033640343,0.003152671],"study_design_scores_gemma":[0.0014695802,0.00029582635,0.0043836194,0.00013997703,0.000012573316,0.0000340326,0.0004336158,0.0000022354063,0.9898667,0.00041867327,0.002833705,0.00010946632],"about_ca_topic_score_codex":0.0000248195,"about_ca_topic_score_gemma":0.0000031394732,"teacher_disagreement_score":0.0032157572,"about_ca_system_score_codex":0.00019127702,"about_ca_system_score_gemma":0.0001322373,"threshold_uncertainty_score":0.39189407},"labels":[],"label_agreement":null},{"id":"W2013260241","doi":"10.1002/ar.20927","title":"Expression of Toll‐Like Receptor 9 in Horse Lungs","year":2009,"lang":"en","type":"article","venue":"The Anatomical Record","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"TLR9; Lipopolysaccharide; Toll-Like Receptor 9; Biology; Receptor; Lung; Toll-like receptor; Cell biology; Molecular biology; Pathology; Immunology; Innate immune system; Gene expression; Medicine; Internal medicine; Biochemistry","score_opus":0.007593341672955918,"score_gpt":0.23945254502979021,"score_spread":0.2318592033568343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013260241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966091,0.00064269186,0.000028519626,0.0011725031,0.00026175263,0.00013745655,0.0000015932827,0.000021419974,0.001124985],"genre_scores_gemma":[0.998001,0.00020477516,0.00006185938,0.00020005135,0.000016112288,0.000004494687,0.00001719897,0.0000047981557,0.0014897545],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913025,0.00024006977,0.00029644495,0.00012096118,0.000026869326,0.00018540214],"domain_scores_gemma":[0.99948305,0.0001474632,0.0000931696,0.00024251165,0.000024240075,0.000009564227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003090067,0.000087023865,0.0001890661,0.00008279004,0.000047533315,0.00000406057,0.0002140345,0.00016034364,0.00049080764],"category_scores_gemma":[0.000109958026,0.000056966197,0.00006732285,0.00012287722,0.00007769392,0.000074634496,0.000034337136,0.00022438829,0.0003277805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008730277,0.000058239875,0.00028485563,0.000002578772,0.000007169437,8.082191e-7,0.00024345586,7.315386e-7,0.9357556,0.00060380774,0.008714996,0.05345471],"study_design_scores_gemma":[0.00077427144,0.00017388846,0.009143841,0.00006148743,0.00000794691,0.0000063839557,0.00012978983,0.000014839048,0.8952865,0.0011436985,0.09315736,0.00010002444],"about_ca_topic_score_codex":0.00004458456,"about_ca_topic_score_gemma":0.0000068730405,"teacher_disagreement_score":0.08444236,"about_ca_system_score_codex":0.000027133765,"about_ca_system_score_gemma":0.000028201885,"threshold_uncertainty_score":0.53739995},"labels":[],"label_agreement":null},{"id":"W2013409259","doi":"10.1016/j.humimm.2013.05.010","title":"HLA-DO increases bacterial superantigen binding to human MHC molecules by inhibiting dissociation of class II-associated invariant chain peptides","year":2013,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital; Hôpital Saint-Luc; McGill University Health Centre; Royal Victoria Regional Health Centre; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Human leukocyte antigen; Superantigen; MHC class II; Major histocompatibility complex; Peptide; Biology; MHC class I; MHC restriction; Molecular biology; CIITA; T-cell receptor; Chemistry; HLA-DR; Cell biology; Antigen; Immunology; T cell; Biochemistry; Immune system","score_opus":0.009183651940097421,"score_gpt":0.22545989919058354,"score_spread":0.2162762472504861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013409259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99731034,0.0008151299,0.000014337936,0.00026953206,0.00027334978,0.0006043556,0.000058499143,0.00012268723,0.00053177046],"genre_scores_gemma":[0.9960696,0.000058331163,0.000018769168,0.000074983705,0.0000444806,0.000111401634,0.0019162961,0.000042793898,0.0016633134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970524,0.00089729147,0.0009220792,0.0003985018,0.00007324764,0.0006565301],"domain_scores_gemma":[0.99869275,0.00020766984,0.00052453723,0.0003108911,0.00023470921,0.000029426588],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006044912,0.00032255024,0.0006232895,0.00041615925,0.000975418,0.000059419857,0.00036085935,0.0005486051,0.0016182018],"category_scores_gemma":[0.00053159904,0.00033076972,0.00015040732,0.00024161131,0.00026612807,0.00031674234,0.00031068383,0.00034625037,0.00045418667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014324195,0.00023832476,0.0013985174,0.000013088805,0.00039424433,0.0000017927651,0.0019868168,0.0000013607522,0.99000233,0.0019190032,0.003332089,0.0005692022],"study_design_scores_gemma":[0.0022636736,0.00087632344,0.048870094,0.00017211282,0.00006184058,0.000015744463,0.0012782069,0.0000028845564,0.9432943,0.0002633416,0.0024650523,0.0004364526],"about_ca_topic_score_codex":0.002592823,"about_ca_topic_score_gemma":0.000120161996,"teacher_disagreement_score":0.047471575,"about_ca_system_score_codex":0.00017730967,"about_ca_system_score_gemma":0.00006077292,"threshold_uncertainty_score":0.9999144},"labels":[],"label_agreement":null},{"id":"W2013856377","doi":"10.1097/ccm.0b013e3181b42af0","title":"Association between tumor necrosis factor-α promoter −308 A/G polymorphism and susceptibility to sepsis and sepsis mortality: A systematic review and meta-analysis","year":2009,"lang":"en","type":"review","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Canadian Institutes of Health Research","keywords":"Odds ratio; Medicine; Sepsis; Confidence interval; Meta-analysis; Internal medicine; Population; Subgroup analysis; Genotype; Gastroenterology; Immunology; Genetics; Biology; Gene","score_opus":0.0779999312489941,"score_gpt":0.3765759410972619,"score_spread":0.2985760098482678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2013856377","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00051454804,0.99222654,0.000036338373,0.004115311,0.000061445135,0.002612203,0.00034481316,0.000050836734,0.00003796752],"genre_scores_gemma":[0.008715039,0.98804575,0.000027860699,0.0014690969,0.000051264265,0.00031967674,0.00067400135,0.0000361424,0.0006611446],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99452853,0.002234461,0.0017050741,0.0008549563,0.00019914444,0.0004778061],"domain_scores_gemma":[0.9964011,0.0018841199,0.00047139736,0.00070775056,0.00037866118,0.00015697359],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00170664,0.0006824043,0.009245023,0.00043353232,0.00021315552,0.000054188353,0.00018929392,0.0005920778,0.00057381537],"category_scores_gemma":[0.004748518,0.00043627195,0.00086285267,0.0006135243,0.00030033666,0.00012410869,0.00014923375,0.0005595634,0.000037699974],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000008863942,0.00003340524,0.0003189189,0.885186,0.101097465,0.0000148440095,0.00085362286,3.1167509e-9,0.000034510664,0.000057525347,0.000649985,0.011744839],"study_design_scores_gemma":[0.00021610456,0.00034227362,0.00080114347,0.021469535,0.9627029,0.000037166265,0.00015217125,1.07867656e-7,0.0000163722,0.000036676996,0.013754676,0.00047090426],"about_ca_topic_score_codex":0.00016363412,"about_ca_topic_score_gemma":0.00003634273,"teacher_disagreement_score":0.8637165,"about_ca_system_score_codex":0.00020267304,"about_ca_system_score_gemma":0.00007162861,"threshold_uncertainty_score":0.9998089},"labels":[],"label_agreement":null},{"id":"W2014167332","doi":"10.1016/j.immuni.2010.12.015","title":"Signaling via the RIP2 Adaptor Protein in Central Nervous System-Infiltrating Dendritic Cells Promotes Inflammation and Autoimmunity","year":2011,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":150,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; American Lebanese Syrian Associated Charities; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Yale University","keywords":"Neuroinflammation; Signal transducing adaptor protein; Experimental autoimmune encephalomyelitis; NOD1; TLR2; Biology; Inflammasome; Inflammation; Autoimmunity; TLR4; Cell biology; NOD2; Immunology; Signal transduction; Immune system; Innate immune system","score_opus":0.01629709613009343,"score_gpt":0.20502411156984057,"score_spread":0.18872701543974715,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014167332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970265,0.0007183983,0.00028267808,0.00006440345,0.00025433936,0.0008791976,0.000004719768,0.00011717229,0.0006526108],"genre_scores_gemma":[0.99947304,0.000009273565,0.00021808309,0.000010166005,0.000024765168,0.00008836024,0.000032610955,0.000018379767,0.00012532345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997139,0.0015888637,0.00058058975,0.00017842595,0.000054081072,0.00045908487],"domain_scores_gemma":[0.99899787,0.00021011438,0.00024621814,0.00043884869,0.000087015665,0.000019933283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012643122,0.00022119744,0.00027089467,0.00012812363,0.00061959785,0.00004487833,0.0003111508,0.00024222012,0.00007933598],"category_scores_gemma":[0.00017344802,0.00017466178,0.00006242971,0.00019143862,0.00023887862,0.00035025628,0.00012688231,0.0007216271,0.00007028676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018937726,0.00005695447,0.0004594964,0.00010608939,0.00005039489,0.000005994542,0.0067408076,0.0000064890364,0.9836473,0.00071789336,0.0000039734873,0.008015238],"study_design_scores_gemma":[0.00066027505,0.0001438316,0.047252968,0.00027205102,0.00003049596,0.000078642086,0.0030678606,0.00026875982,0.9477248,0.00015208902,0.0001337386,0.00021448558],"about_ca_topic_score_codex":0.003651339,"about_ca_topic_score_gemma":0.00016763984,"teacher_disagreement_score":0.04679347,"about_ca_system_score_codex":0.000097980585,"about_ca_system_score_gemma":0.00008663562,"threshold_uncertainty_score":0.7122501},"labels":[],"label_agreement":null},{"id":"W2014762407","doi":"10.1016/j.imlet.2004.07.019","title":"Polycationic lipids inhibit the pro-inflammatory response to LPS","year":2004,"lang":"en","type":"article","venue":"Immunology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Internalization; Lipopolysaccharide; Cell biology; CD14; Lipid A; Lipid raft; Chemistry; Inflammation; Signal transduction; Biology; Receptor; Biochemistry; Immunology","score_opus":0.006515523938025441,"score_gpt":0.2176365394193953,"score_spread":0.21112101548136986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014762407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9142085,0.0014918584,0.00043904994,0.08155098,0.0013543897,0.0006021356,0.0000034089678,0.00018721021,0.00016250004],"genre_scores_gemma":[0.9909586,0.000036011235,0.00006972177,0.007044,0.000079995414,0.0002049228,0.000038117538,0.000034323006,0.001534321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766845,0.0007850669,0.00049463374,0.0003640859,0.000060614777,0.00062715966],"domain_scores_gemma":[0.9986162,0.00029965417,0.00016215925,0.00082502083,0.000075149765,0.000021823647],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00095320906,0.0002684833,0.00025709474,0.00031033673,0.00057170464,0.00003767312,0.0005831092,0.00030591027,0.00020772932],"category_scores_gemma":[0.0003672734,0.00020881562,0.00013624562,0.00032591392,0.0005198869,0.0002016942,0.0001748452,0.0005432524,0.006973852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025946044,0.000042748805,0.00028987386,0.000004050322,0.00020402535,0.000011449718,0.0020983848,0.000104245235,0.98833156,0.001310625,0.0030894142,0.0019190419],"study_design_scores_gemma":[0.0023232638,0.00031128034,0.0540442,0.000052640655,0.000032385487,0.00029970432,0.000355925,3.2172983e-7,0.7604933,0.00016526268,0.18157665,0.0003450863],"about_ca_topic_score_codex":0.000074597265,"about_ca_topic_score_gemma":0.000014444222,"teacher_disagreement_score":0.22783826,"about_ca_system_score_codex":0.00024680278,"about_ca_system_score_gemma":0.00022403331,"threshold_uncertainty_score":0.9937993},"labels":[],"label_agreement":null},{"id":"W2014793846","doi":"10.1007/s10719-007-9088-2","title":"TLR-independent induction of human monocyte IL-1 by phosphoglycolipids from thermophilic bacteria","year":2007,"lang":"en","type":"article","venue":"Glycoconjugate Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Thermus thermophilus; Biology; Bacteria; Thermophile; Biochemistry; Microbiology; Enzyme; Escherichia coli","score_opus":0.01036719201681822,"score_gpt":0.24406470113642745,"score_spread":0.23369750911960924,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014793846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99326974,0.0033462713,0.00031559722,0.00017647898,0.0017201204,0.0001939943,0.000032230524,0.000036981735,0.0009085768],"genre_scores_gemma":[0.99734676,0.00048722743,0.00003938659,0.00012021723,0.00023976753,0.000004373005,0.0001597894,0.00002564807,0.0015768114],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981548,0.00024070925,0.00085756014,0.0002162858,0.00009587545,0.00043472886],"domain_scores_gemma":[0.9988267,0.000093299146,0.0006057213,0.00027993266,0.00014413531,0.000050208604],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009951706,0.00022471708,0.00036581705,0.00019090614,0.0003396545,0.000039445473,0.0002879975,0.00038426215,0.0034440362],"category_scores_gemma":[0.00004783466,0.00019826095,0.00017104151,0.00012063389,0.00013609501,0.00040011425,0.00006130712,0.00064924156,0.0003125353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011345119,0.00009598957,0.0002913666,0.000004892963,0.00024348243,0.000010543043,0.0005917161,0.0000012344318,0.97610813,0.00009691478,0.004717412,0.016703796],"study_design_scores_gemma":[0.0022053886,0.00034639938,0.020283597,0.000046244266,0.00005530967,0.00022981517,0.0003405317,9.186417e-7,0.89107406,0.0003189329,0.08490571,0.00019306352],"about_ca_topic_score_codex":0.00020379842,"about_ca_topic_score_gemma":0.000013005004,"teacher_disagreement_score":0.08503405,"about_ca_system_score_codex":0.00012061484,"about_ca_system_score_gemma":0.00006972931,"threshold_uncertainty_score":0.9974669},"labels":[],"label_agreement":null},{"id":"W2014834877","doi":"10.1074/jbc.m302660200","title":"Oxidative Stress Reprograms Lipopolysaccharide Signaling via Src Kinase-dependent Pathway in RAW 264.7 Macrophage Cell Line","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University Health Network; University of Toronto","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Proto-oncogene tyrosine-protein kinase Src; Cell biology; Oxidative stress; Lipopolysaccharide; Macrophage; Signal transduction; Cell culture; Kinase; Chemistry; Biology; Immunology; Biochemistry; Genetics","score_opus":0.014949908828964974,"score_gpt":0.23504185056462254,"score_spread":0.22009194173565758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014834877","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99378383,0.004625662,0.0005253944,0.000059173068,0.00023154353,0.0001079899,0.00000673986,0.000020707446,0.000638987],"genre_scores_gemma":[0.99880093,0.00023239336,0.0001940426,0.00004835393,0.00007635879,0.000006249084,0.000032254444,0.000011486247,0.0005979166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99801326,0.00038856358,0.0008807954,0.00025986883,0.000075008036,0.0003825269],"domain_scores_gemma":[0.9987135,0.0002297586,0.00064030866,0.0002139604,0.00015294635,0.000049532013],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010439291,0.00022972294,0.00045655997,0.00006324228,0.00008691542,0.00002301854,0.00028686144,0.00054597977,0.0009535485],"category_scores_gemma":[0.0004914586,0.00016511009,0.00020768242,0.00012301489,0.0001448492,0.00009889161,0.000058505222,0.00090006524,0.00005487098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054290576,0.00038713744,0.0010048413,0.000028825978,0.000058471538,0.00020001331,0.00010893921,0.000060999788,0.9939162,0.000012058148,0.000020032658,0.003659566],"study_design_scores_gemma":[0.0014835789,0.0003508141,0.00014234705,0.0000809622,0.00001457086,0.00027595946,0.00048750718,0.0000034115083,0.99521405,0.00017284387,0.0015816496,0.00019233131],"about_ca_topic_score_codex":0.000012017335,"about_ca_topic_score_gemma":8.945424e-7,"teacher_disagreement_score":0.0050171423,"about_ca_system_score_codex":0.00009682279,"about_ca_system_score_gemma":0.00008944812,"threshold_uncertainty_score":0.9999597},"labels":[],"label_agreement":null},{"id":"W2014956761","doi":"10.1016/j.dci.2007.09.003","title":"Gene expression profiling of chicken lymphoid cells after treatment with Lactobacillus acidophilus cellular components","year":2007,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":115,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph","funders":"Canadian Poultry Research Council","keywords":"Biology; Lactobacillus acidophilus; Immune system; STAT4; STAT2; Spleen; Splenocyte; Microbiology; Molecular biology; Immunology; Cell biology; Signal transduction; Bacteria; Genetics; stat","score_opus":0.019925385410459077,"score_gpt":0.2386406521105863,"score_spread":0.21871526670012723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2014956761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934481,0.0030705503,0.0011836643,0.000017103544,0.00046791363,0.0006430705,0.000024958605,0.00006058955,0.0010840693],"genre_scores_gemma":[0.9949674,0.00009522034,0.0036237857,0.000028015771,0.000017384416,0.00007998356,0.0005316144,0.000024012115,0.00063259073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978979,0.00028815016,0.000712773,0.00042969713,0.0000855922,0.0005858932],"domain_scores_gemma":[0.9990405,0.00015103645,0.0003528109,0.00028621726,0.0001387119,0.00003070954],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025964598,0.00041986408,0.0006741139,0.0002870233,0.00022566275,0.000010719339,0.00022458268,0.00028848567,0.00035805194],"category_scores_gemma":[0.0000054437032,0.0003229335,0.000101349695,0.00021510692,0.0004749725,0.0001728174,0.00014096551,0.00020840875,0.0006312592],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0067270724,0.00036868322,0.008704799,0.000011291619,0.00057105796,0.00004428348,0.0036977283,0.000006097322,0.9784758,0.000032963766,0.0000186977,0.0013415237],"study_design_scores_gemma":[0.0036729495,0.00084067194,0.029233642,0.000067416026,0.000037812417,0.00020675987,0.0013775505,0.0000019776282,0.9606007,0.0000095721825,0.0036012335,0.0003497675],"about_ca_topic_score_codex":0.0000737656,"about_ca_topic_score_gemma":0.000021986225,"teacher_disagreement_score":0.020528844,"about_ca_system_score_codex":0.00038058075,"about_ca_system_score_gemma":0.00017962947,"threshold_uncertainty_score":0.9999223},"labels":[],"label_agreement":null},{"id":"W2015486163","doi":"10.1016/j.exger.2015.03.009","title":"Altered neutrophil functions in elderly patients during a 6-month follow-up period after a hip fracture","year":2015,"lang":"en","type":"article","venue":"Experimental Gerontology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health and Social Services Centre University Institute of Geriatrics of Sherbrooke; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Economic and Social Research Council; Canadian Institutes of Health Research; Université de Sherbrooke","keywords":"NADPH oxidase; Chemokine; TLR2; TLR4; Phagocytosis; Superoxide; Inflammation; Endocrinology; Internal medicine; Medicine; PI3K/AKT/mTOR pathway; Chemotaxis; Downregulation and upregulation; Immunology; Signal transduction; Receptor; Chemistry; Oxidative stress; Biochemistry","score_opus":0.01793251226062659,"score_gpt":0.2542071243924326,"score_spread":0.236274612131806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015486163","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907995,0.0054905727,0.000019728732,0.00030100925,0.0021274684,0.00035870585,0.0000068595527,0.0000653854,0.00083077635],"genre_scores_gemma":[0.99654573,0.000004292539,0.000026496376,0.00015687876,0.000062450505,0.00026560927,0.000170644,0.000023572198,0.0027443278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837947,0.00032135975,0.0003931803,0.00036668472,0.000052504234,0.00048678456],"domain_scores_gemma":[0.9994659,0.00002342097,0.00011093692,0.00030284162,0.000050782164,0.00004613569],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000095773896,0.00024932993,0.00034069526,0.0001806155,0.00012130214,0.000018749255,0.00015545097,0.00035899595,0.0008203628],"category_scores_gemma":[0.000039409104,0.00023605094,0.000103786515,0.00009134387,0.00012789432,0.0002651252,0.000090874004,0.00030752603,0.0007165405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02420211,0.001742906,0.05456131,0.000024967623,0.00033659374,0.0001294377,0.03831749,0.000039346163,0.8710336,0.00009342989,0.0070799515,0.0024388295],"study_design_scores_gemma":[0.039623275,0.004560925,0.35941318,0.00007627037,0.000064334155,0.00036981076,0.012640997,0.000015642125,0.5032705,0.00005827477,0.07875469,0.001152096],"about_ca_topic_score_codex":0.00035056667,"about_ca_topic_score_gemma":0.00018928383,"teacher_disagreement_score":0.3677631,"about_ca_system_score_codex":0.00025012114,"about_ca_system_score_gemma":0.000059729697,"threshold_uncertainty_score":0.96258783},"labels":[],"label_agreement":null},{"id":"W2015934540","doi":"10.1038/nature09982","title":"Non-apoptotic role of BID in inflammation and innate immunity","year":2011,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; McGill University","keywords":"NOD2; Innate immune system; NOD1; Nod; Inflammation; Cell biology; Pattern recognition receptor; Biology; Crosstalk; Signal transduction; Immunology; Immune system; Genetics; Gene","score_opus":0.005604335869931057,"score_gpt":0.2138417881023191,"score_spread":0.20823745223238804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2015934540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935378,0.0027638257,0.0000026830137,0.000045377565,0.0001195943,0.000114173105,0.0000016130358,0.000012336255,0.003402602],"genre_scores_gemma":[0.9996231,0.00011204259,0.00004452068,0.000019185682,0.0000066615357,0.000004793919,0.000031332864,0.000004907672,0.00015344212],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995187,0.000084583844,0.00018667032,0.00008105041,0.00001762436,0.0001113836],"domain_scores_gemma":[0.999696,0.000029944009,0.00008623532,0.00013916286,0.000043635886,0.000004989776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023609161,0.0000721162,0.00012826061,0.00015819943,0.000034775876,0.000002466094,0.00008617271,0.0008346141,0.00010188048],"category_scores_gemma":[0.00006826064,0.00006370522,0.000021965892,0.00012448433,0.000060216607,0.0001288306,0.0000421944,0.00086357765,0.000039332164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002675638,0.000026211052,0.0057935524,0.000018725743,0.000023761253,7.7666886e-7,0.0028319627,5.2897303e-7,0.9805646,0.0012537653,0.000039538667,0.009178999],"study_design_scores_gemma":[0.00047880394,0.000055809756,0.25188044,0.000030120522,0.0000068279346,0.0000072795674,0.00026061098,0.000008232361,0.7450883,0.000640308,0.0014861563,0.000057125555],"about_ca_topic_score_codex":0.00011900147,"about_ca_topic_score_gemma":0.000025379679,"teacher_disagreement_score":0.24608688,"about_ca_system_score_codex":0.000011319849,"about_ca_system_score_gemma":0.0000222318,"threshold_uncertainty_score":0.6437308},"labels":[],"label_agreement":null},{"id":"W2016422794","doi":"10.6000/1927-5951.2014.04.03.6","title":"Immunomodulatory Effects of Lycii Radicis Cortex Water Extract on Lipopolysaccharide-Activated RAW 264.7 Mouse Macrophages","year":2014,"lang":"en","type":"article","venue":"Journal of Pharmacy and Nutrition Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Lipopolysaccharide; Tumor necrosis factor alpha; Pharmacology; Cytokine; Chemistry; Macrophage; Nitric oxide; Chemokine; Immunology; Immune system; Biology; Medicine; Internal medicine; Biochemistry; In vitro","score_opus":0.011631665682129639,"score_gpt":0.2748665039352385,"score_spread":0.26323483825310884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016422794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950043,0.0036713413,0.00013801586,0.00030527657,0.000663281,0.0001303132,0.0000016074679,0.000010261597,0.00007558548],"genre_scores_gemma":[0.99834406,0.0012983629,0.00004076041,0.00012353405,0.00006838016,0.0000034003062,0.0000036442705,0.0000057702264,0.00011207278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986722,0.0003863682,0.0004935415,0.00013673924,0.000107170854,0.00020397115],"domain_scores_gemma":[0.99901414,0.00035483597,0.00038832196,0.00008832065,0.00012611736,0.00002825029],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010456397,0.00012787287,0.00029695628,0.00033667785,0.00025520116,0.000030522453,0.00019591056,0.00006836329,0.00017348606],"category_scores_gemma":[0.00011032292,0.00008327707,0.000105587904,0.00009710319,0.00039795876,0.00051626825,0.000024392979,0.00023694994,0.00002990813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012296857,0.00022403013,0.00013166819,0.000073613046,0.00006802674,0.000005253166,0.00022962308,0.0000051876605,0.98798615,0.00009285013,0.00029597222,0.00965795],"study_design_scores_gemma":[0.0034539606,0.0010172494,0.0011003712,0.00013286527,0.000050435236,0.00015457028,0.00008689584,0.000046075882,0.98657894,0.0001491325,0.007128583,0.000100910685],"about_ca_topic_score_codex":0.000017582475,"about_ca_topic_score_gemma":1.9510071e-7,"teacher_disagreement_score":0.0095570395,"about_ca_system_score_codex":0.000015612877,"about_ca_system_score_gemma":0.000030262787,"threshold_uncertainty_score":0.339594},"labels":[],"label_agreement":null},{"id":"W2016939538","doi":"10.1038/ncomms7062","title":"Glucocorticoids suppress inflammation via the upregulation of negative regulator IRAK-M","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":133,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of General Medical Sciences; National Institutes of Health; National Institute on Deafness and Other Communication Disorders; Georgia Research Alliance; Howard Hughes Medical Institute","keywords":"Inflammation; Downregulation and upregulation; Haemophilus influenzae; Regulator; Glucocorticoid; Glucocorticoid receptor; Immunology; Biology; Receptor; Microbiology; Gene; Genetics; Antibiotics","score_opus":0.019198477908527363,"score_gpt":0.2778492270611879,"score_spread":0.25865074915266056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2016939538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96288556,0.014254049,0.0019734707,0.011912603,0.0009621818,0.001226782,0.000024286399,0.00017452239,0.0065865214],"genre_scores_gemma":[0.9982696,0.00009262584,0.0006220337,0.000063035295,0.000033892906,0.00006265546,0.00034986896,0.000012840827,0.0004934213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984846,0.00070510816,0.00044481692,0.00012690053,0.000082346494,0.00015624067],"domain_scores_gemma":[0.9969399,0.00050790375,0.0003487506,0.0016373876,0.00054777786,0.000018253506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006072539,0.00012786112,0.00017390543,0.00011067193,0.0002841296,0.000017301358,0.00084570056,0.0004175637,0.000041672996],"category_scores_gemma":[0.00070896593,0.000095283176,0.00007921902,0.00033488427,0.00041001945,0.00028459044,0.00025184223,0.00061289483,0.000104095576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004258811,0.0001308472,0.0016106409,0.000015675763,0.00025109865,2.2186673e-7,0.0070523345,0.0001753064,0.90861773,0.054437652,0.008101585,0.01918104],"study_design_scores_gemma":[0.0017177867,0.0001242562,0.061736006,0.00005307868,0.00012582119,0.0000323663,0.0011396965,0.0011017569,0.788871,0.0045296587,0.14032617,0.00024243366],"about_ca_topic_score_codex":0.000060132683,"about_ca_topic_score_gemma":0.00009606994,"teacher_disagreement_score":0.13222459,"about_ca_system_score_codex":0.00006288923,"about_ca_system_score_gemma":0.0001119656,"threshold_uncertainty_score":0.3885535},"labels":[],"label_agreement":null},{"id":"W2017213049","doi":"10.1128/iai.71.4.1643-1649.2003","title":"Effect of Interleukin-8 and Granulocyte Colony-Stimulating Factor on Priming and Activation of Bovine Neutrophils","year":2003,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Respiratory burst; Biology; Phagocytosis; Priming (agriculture); Granulocyte; Immunology; In vivo; Interleukin 8; In vitro; Microbiology; Flow cytometry; Cytokine; Biochemistry","score_opus":0.01098452810666915,"score_gpt":0.2585345660465204,"score_spread":0.24755003793985128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017213049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9989414,0.0002443684,0.00011331243,0.000013650474,0.00011108896,0.00021050299,0.00000201218,0.000016233187,0.0003473911],"genre_scores_gemma":[0.9997497,0.00015853511,0.000008571602,0.0000110713645,0.0000036703902,0.0000050689614,0.000011445063,0.000005807045,0.00004613031],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998985,0.00057536276,0.00022764703,0.00009948986,0.000020594596,0.000091913585],"domain_scores_gemma":[0.9991957,0.00047010623,0.00017130343,0.00010534123,0.00004794699,0.000009618391],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040678415,0.00010783658,0.00022461743,0.00013914378,0.00014987588,0.000008099832,0.00001916356,0.00012274006,0.000029871138],"category_scores_gemma":[0.00039927056,0.00009157689,0.000028237973,0.00007373609,0.00012862335,0.00013225588,0.000024937879,0.0001844515,0.0000015897318],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008758042,0.000034238765,0.030064149,0.00012319277,0.00004967824,9.8660095e-8,0.00048135378,0.0000060137363,0.9439889,0.00027173202,0.000003111332,0.024101691],"study_design_scores_gemma":[0.0012125897,0.0019437539,0.21857476,0.000092449525,0.00002209944,0.00001654939,0.000028339831,0.000022023163,0.7776255,0.000020170415,0.00037628532,0.00006546654],"about_ca_topic_score_codex":0.00024734717,"about_ca_topic_score_gemma":0.0000038828707,"teacher_disagreement_score":0.18851061,"about_ca_system_score_codex":0.000016762599,"about_ca_system_score_gemma":0.000011195984,"threshold_uncertainty_score":0.3734397},"labels":[],"label_agreement":null},{"id":"W2017785511","doi":"10.1371/journal.pone.0021769","title":"Association Pattern of Interleukin-1 Receptor-Associated Kinase-4 Gene Polymorphisms with Allergic Rhinitis in a Han Chinese Population","year":2011,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hotel Dieu Hospital; Montreal General Hospital; Université de Montréal; Hôtel-Dieu de Montréal; McGill University","funders":"National Science Fund for Distinguished Young Scholars; National Natural Science Foundation of China","keywords":"Genetics; Gene; Biology; Interleukin-4 receptor; Immunology; Medicine; Interleukin-21 receptor","score_opus":0.02081216716025435,"score_gpt":0.19581044952164542,"score_spread":0.17499828236139106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017785511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988649,0.00024766615,0.000019322884,0.00012038588,0.00008754391,0.00024420375,0.000018384988,0.00004869437,0.0003489164],"genre_scores_gemma":[0.9980687,0.00006995988,0.00009741435,0.000040649025,0.0000143069965,0.00003288964,0.00062574394,0.000019928206,0.0010304317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987813,0.00031154836,0.0004120397,0.00017535273,0.00008326436,0.00023646894],"domain_scores_gemma":[0.9992227,0.00007628352,0.00042122457,0.00017579466,0.00009227498,0.0000117022055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031897906,0.00014643943,0.00033695032,0.00021124813,0.000050889506,0.000006036049,0.00011715202,0.00025446678,0.00062383746],"category_scores_gemma":[0.0001669559,0.00012917322,0.0000479289,0.00021368076,0.000028627672,0.00017170576,0.00003090087,0.00019830427,0.00014167358],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041768816,0.0009062343,0.4343617,0.000011191205,0.0004965167,0.0000024649496,0.0023270037,4.4207144e-7,0.56057173,0.0000070423057,0.00003296775,0.00086501497],"study_design_scores_gemma":[0.0014090249,0.00034113246,0.60800093,0.00019125048,0.000058140857,0.0000016866599,0.00004866895,0.000012168554,0.38975164,0.000046476136,0.000008313768,0.00013056966],"about_ca_topic_score_codex":0.0022272205,"about_ca_topic_score_gemma":0.00089558866,"teacher_disagreement_score":0.17363922,"about_ca_system_score_codex":0.0001824919,"about_ca_system_score_gemma":0.00002556927,"threshold_uncertainty_score":0.6830583},"labels":[],"label_agreement":null},{"id":"W2017797166","doi":"10.1016/j.smim.2009.08.001","title":"Innate immunity: The connection with inflammation and disease","year":2009,"lang":"en","type":"editorial","venue":"Seminars in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Innate immune system; Inflammation; Immunity; Connection (principal bundle); Disease; Immunology; Medicine; Immune system; Mathematics; Pathology","score_opus":0.003907535822311429,"score_gpt":0.22052968094389938,"score_spread":0.21662214512158795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017797166","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3294156,0.086963184,0.00005732994,0.0036852497,0.5766467,0.0016610313,0.00005966812,0.0002418289,0.0012694187],"genre_scores_gemma":[0.49938425,0.14539103,0.0002153764,0.0006204195,0.29192057,0.0018084237,0.023009626,0.0005825337,0.03706774],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972815,0.0010688702,0.0005919811,0.0004503086,0.00009971015,0.00050765206],"domain_scores_gemma":[0.9973768,0.0012592602,0.00044643128,0.0007234251,0.00017216495,0.000021939604],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.000918438,0.0004434833,0.00055432046,0.0004578766,0.00038696048,0.00005275118,0.00043042647,0.0013762583,0.000070677546],"category_scores_gemma":[0.0015923834,0.0003206391,0.00007088181,0.0003093485,0.0006902576,0.00022967209,0.00016739497,0.0021105153,0.00011840151],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012903332,0.00018718981,0.00022513141,0.00016740317,0.00088520424,0.00011732334,0.0031990262,0.00003747265,0.081581086,0.0019200727,0.7544879,0.1442889],"study_design_scores_gemma":[0.0021330437,0.00065378356,0.0022195608,0.0006440516,0.00015015207,0.00006872914,0.0005013242,0.0000062276004,0.0061036176,0.0011213663,0.98593694,0.00046118733],"about_ca_topic_score_codex":0.0002187048,"about_ca_topic_score_gemma":0.00012105168,"teacher_disagreement_score":0.2847261,"about_ca_system_score_codex":0.00017221851,"about_ca_system_score_gemma":0.00048254128,"threshold_uncertainty_score":0.99992454},"labels":[],"label_agreement":null},{"id":"W2017874184","doi":"10.1111/j.1530-0277.2002.tb02663.x","title":"Glutathione Replacement Preserves the Functional Surfactant Phospholipid Pool Size and Decreases Sepsis‐Mediated Lung Dysfunction in Ethanol‐Fed Rats","year":2002,"lang":"en","type":"article","venue":"Alcoholism Clinical and Experimental Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"ARDS; Pulmonary surfactant; Lung; Phospholipid; Sepsis; Internal medicine; Glutathione; Respiratory distress; Endocrinology; Chemistry; Medicine; Biochemistry; Anesthesia","score_opus":0.09874751134721672,"score_gpt":0.3788714287981937,"score_spread":0.280123917450977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017874184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775687,0.018545289,0.0000029808568,0.0022266996,0.00045060014,0.000605227,0.0000056871813,0.000033653523,0.0005611807],"genre_scores_gemma":[0.9927528,0.0035929766,0.000012976476,0.00028574266,0.00006752402,0.00014566242,0.000058848324,0.000016415277,0.0030670548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964604,0.0016013266,0.00068209827,0.00051081425,0.00021351874,0.0005318547],"domain_scores_gemma":[0.99572414,0.003687114,0.00009461926,0.0003094517,0.00010237659,0.00008228761],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002673108,0.00019701656,0.00031547458,0.00011713219,0.00053578493,0.00007533839,0.000158731,0.00031500089,0.0019204628],"category_scores_gemma":[0.0018107696,0.0001378651,0.00008510445,0.00025811754,0.0008798091,0.0002522305,0.00032542777,0.0008055992,0.0002226022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009759917,0.001109024,0.019970244,0.000029409242,0.00027753023,0.000020033913,0.0019285674,0.000004572497,0.94856715,0.0004073903,0.0141263865,0.0037997854],"study_design_scores_gemma":[0.010503776,0.0017859066,0.20505932,0.00013967753,0.000039635295,0.00008777403,0.0035012104,0.0011145856,0.75821096,0.00021528729,0.018904997,0.00043687221],"about_ca_topic_score_codex":0.00042721297,"about_ca_topic_score_gemma":0.000019926792,"teacher_disagreement_score":0.19035618,"about_ca_system_score_codex":0.000057290526,"about_ca_system_score_gemma":0.000051376584,"threshold_uncertainty_score":0.9989919},"labels":[],"label_agreement":null},{"id":"W2017973506","doi":"10.1159/000095162","title":"Lipopolysaccharide and TNF-α Produce Very Similar Changes in Gene Expression in Human Endothelial Cells","year":2006,"lang":"en","type":"article","venue":"Journal of Vascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital; McGill University Health Centre; Royal Victoria Regional Health Centre","funders":"","keywords":"Tumor necrosis factor alpha; CD14; Biology; Autocrine signalling; Lipopolysaccharide; Molecular biology; Gene expression; TLR4; Microarray analysis techniques; Cell adhesion molecule; Chemokine; Signal transduction; Cell biology; Immunology; Receptor; Gene; Inflammation; Flow cytometry; Biochemistry","score_opus":0.025218180089188948,"score_gpt":0.3011087763533624,"score_spread":0.27589059626417345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2017973506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923552,0.0068364525,0.000015543352,0.00036707858,0.00014070526,0.00020060033,0.0000013527886,0.0000039273896,0.00007911335],"genre_scores_gemma":[0.99796164,0.001348251,0.00008499336,0.000011456258,0.00014608054,0.000008276963,0.000005465221,0.000012927711,0.00042093557],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99792147,0.0009698631,0.0004163041,0.00016462743,0.00016657982,0.00036116046],"domain_scores_gemma":[0.9993699,0.00014809289,0.00012270932,0.00019071512,0.00015103504,0.00001750062],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0036705907,0.00010124645,0.00026844014,0.000851327,0.00011922259,0.000027721102,0.00020007225,0.00017368043,0.000084731786],"category_scores_gemma":[0.00015486688,0.000083085986,0.0000680287,0.00018231734,0.000119125754,0.00017062345,0.000098687866,0.00073505647,0.000019875015],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030275137,0.00013803609,0.0015339066,0.000025242764,0.000022102598,0.000075970995,0.00030903402,0.000035301102,0.9954066,0.00003470033,0.000450352,0.0016659768],"study_design_scores_gemma":[0.0016858603,0.00021772632,0.010615094,0.00015096249,0.0000057554303,0.000061879946,0.00016885767,0.000002969227,0.98024297,0.00021055352,0.0065594115,0.00007794662],"about_ca_topic_score_codex":0.0002549904,"about_ca_topic_score_gemma":0.000111453,"teacher_disagreement_score":0.015163642,"about_ca_system_score_codex":0.0000840637,"about_ca_system_score_gemma":0.00008733192,"threshold_uncertainty_score":0.3388148},"labels":[],"label_agreement":null},{"id":"W2018079325","doi":"10.1097/00003246-200007000-00065","title":"Increased gut permeability and bacterial translocation in Pseudomonas pneumonia-induced sepsis","year":2000,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":123,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre","funders":"","keywords":"Pneumonia; Medicine; Sepsis; Gastroenterology; Internal medicine; Intestinal permeability; Pathogenesis; Vascular permeability; Pseudomonas aeruginosa; Bacterial pneumonia; Mesenteric lymph nodes; Pathology; Anesthesia; Spleen; Biology; Bacteria","score_opus":0.01391257135138823,"score_gpt":0.2797598336610277,"score_spread":0.26584726230963945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018079325","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99259424,0.002024662,0.000010524091,0.0036928074,0.00025746907,0.0001972997,0.000005769785,0.00003798331,0.0011792316],"genre_scores_gemma":[0.9993638,0.00010180461,0.000012464503,0.0001775542,0.000079025755,0.000025666637,0.00016450607,0.0000089568775,0.000066231],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987221,0.00039299484,0.00034464608,0.00025068023,0.000045876626,0.00024370002],"domain_scores_gemma":[0.9993214,0.0003470316,0.0000159347,0.00019329655,0.00008725044,0.000035068784],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033176632,0.00013582662,0.00029852526,0.00008889738,0.000097078395,0.000007162649,0.00007520319,0.00022092303,0.0033006165],"category_scores_gemma":[0.0005865327,0.00011332241,0.000031920434,0.00011172879,0.00037856342,0.00010568485,0.000010263376,0.00022429269,0.000092695846],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007361218,0.000040734216,0.0008286909,0.000068220535,0.000008427174,0.000008191817,0.002705676,1.3542022e-7,0.9270657,0.00025633423,0.00005033759,0.06823148],"study_design_scores_gemma":[0.012205539,0.0021511202,0.5609888,0.000628,0.00022258422,0.00025257867,0.008410229,0.00004523629,0.3958422,0.0008293823,0.017722119,0.00070225],"about_ca_topic_score_codex":0.0004895289,"about_ca_topic_score_gemma":0.00007367902,"teacher_disagreement_score":0.5601601,"about_ca_system_score_codex":0.0000507415,"about_ca_system_score_gemma":0.000051339724,"threshold_uncertainty_score":0.9976105},"labels":[],"label_agreement":null},{"id":"W2018174911","doi":"10.1371/journal.pone.0056014","title":"T Cell Intrinsic NOD2 Is Dispensable for CD8 T Cell Immunity","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Sanofi Pasteur; University of Toronto; Sanofi","keywords":"NOD2; Muramyl dipeptide; Biology; T cell; Cytotoxic T cell; Adoptive cell transfer; Innate immune system; Antigen-presenting cell; CD8; Cell biology; Acquired immune system; Immune system; Immunology; In vitro","score_opus":0.024048953739176867,"score_gpt":0.20092970010852257,"score_spread":0.1768807463693457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018174911","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990614,0.0014831332,0.000085987784,0.0005256934,0.00012386403,0.0007517789,0.000014818028,0.000068064954,0.006332637],"genre_scores_gemma":[0.9581248,0.00018198106,0.0004282119,0.00029626698,0.000036292055,0.00015831344,0.00016710207,0.000021918177,0.040585104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990663,0.00011038304,0.00026396662,0.0001781035,0.00003438919,0.00034685677],"domain_scores_gemma":[0.9991408,0.0001781486,0.00011210608,0.00038925634,0.00016168578,0.00001801046],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016083574,0.00014491689,0.00025445508,0.00007933705,0.00022214759,0.000027810307,0.00020777898,0.00020637584,0.0035981704],"category_scores_gemma":[0.00005625522,0.00013401054,0.00008276281,0.000082401006,0.00006884494,0.00020993446,0.00007848143,0.00022305893,0.010054428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001295085,0.00080173265,0.00027506237,0.00010191454,0.000109923436,2.1721007e-7,0.00039954056,2.843347e-7,0.98367894,0.00004973727,0.013657205,0.00079594617],"study_design_scores_gemma":[0.0011948517,0.00019433867,0.0011024999,0.000033724795,0.00008324934,0.0000011320676,0.00013528303,0.000022208416,0.98616636,0.00021318778,0.010681041,0.00017210963],"about_ca_topic_score_codex":0.000190284,"about_ca_topic_score_gemma":0.0000027434508,"teacher_disagreement_score":0.03425247,"about_ca_system_score_codex":0.000032800548,"about_ca_system_score_gemma":0.000038672297,"threshold_uncertainty_score":0.99731266},"labels":[],"label_agreement":null},{"id":"W2018560551","doi":"10.1097/ccm.0000000000001005","title":"Toll-Like Receptor 9 Signaling Regulates Tissue Factor and Tissue Factor Pathway Inhibitor Expression in Human Endothelial Cells and Coagulation in Mice","year":2015,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research; Genentech","keywords":"Tissue factor; Tissue factor pathway inhibitor; TLR9; Thromboplastin; Molecular biology; CpG site; Biology; Medicine; Coagulation; Gene expression; Internal medicine; DNA methylation; Gene; Biochemistry","score_opus":0.022476670207426087,"score_gpt":0.2912491406158209,"score_spread":0.2687724704083948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018560551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917985,0.0065286243,0.00007782495,0.00045905143,0.0006733736,0.00030745775,0.000036193796,0.000031426727,0.000087540575],"genre_scores_gemma":[0.9992556,0.000033919667,0.00008262571,0.00006117107,0.0001505639,0.000015091058,0.00014562433,0.000016700405,0.00023869929],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856097,0.0003448024,0.00043367912,0.0003016064,0.00007995523,0.00027897698],"domain_scores_gemma":[0.9992535,0.00038550814,0.000052381303,0.00012560742,0.000117587646,0.000065426844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002433092,0.00018814007,0.00036467417,0.00019969279,0.00008591028,0.000015181167,0.00006847854,0.00031099908,0.0002351302],"category_scores_gemma":[0.00048329038,0.00015475889,0.000013535225,0.00008781748,0.00031550985,0.00017361213,0.000059678285,0.00026942499,0.000022248008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002380016,0.00002381924,0.0006982469,0.00009759066,0.0000033747758,0.000013815226,0.0071778847,9.5108476e-7,0.9857497,0.0000924491,0.00019430598,0.005709853],"study_design_scores_gemma":[0.0024208298,0.0005790029,0.002093897,0.0004146719,0.0000089201985,0.000015495973,0.004502101,0.000004095011,0.979587,0.00010065788,0.010102834,0.00017049078],"about_ca_topic_score_codex":0.00013743473,"about_ca_topic_score_gemma":0.000041822026,"teacher_disagreement_score":0.009908527,"about_ca_system_score_codex":0.00007450885,"about_ca_system_score_gemma":0.000039051047,"threshold_uncertainty_score":0.63108844},"labels":[],"label_agreement":null},{"id":"W2018677997","doi":"10.1152/ajpgi.00562.2004","title":"Toll-like receptor-4 regulation of hepatic<i>Cyp3a11</i>metabolism in a mouse model of LPS-induced CNS inflammation","year":2005,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Inflammation; Endocrinology; Internal medicine; TLR4; Receptor; Biology; Cytochrome P450; Intraperitoneal injection; Metabolism; Medicine","score_opus":0.008543991247993672,"score_gpt":0.21307035612205688,"score_spread":0.2045263648740632,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018677997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988893,0.00026089945,0.00036995517,0.00017545212,0.000094269795,0.00015184798,0.00001246146,0.000011078847,0.000034695277],"genre_scores_gemma":[0.99587506,0.00019471375,0.0036286095,0.00005504794,0.00010442585,0.0000059698173,0.0000324667,0.000016257705,0.00008747176],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975521,0.00062906847,0.0011581572,0.00024707956,0.00007339868,0.00034020023],"domain_scores_gemma":[0.99731356,0.0003045897,0.0017375575,0.00023079886,0.00037507113,0.000038415616],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042404584,0.00025584045,0.0009593802,0.00040956822,0.000059284706,0.000003335585,0.00024364766,0.00011150894,0.00008259169],"category_scores_gemma":[0.00016438426,0.00021835514,0.00017812754,0.00021318119,0.0007379276,0.00031937024,0.000089070076,0.00041304668,0.000014654455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026692732,0.00017304749,0.00034442256,0.00003923619,0.00008512106,4.003533e-7,0.0008328261,0.0030091591,0.98303044,0.0007227957,0.000047695026,0.009045582],"study_design_scores_gemma":[0.0021283487,0.002668296,0.10604974,0.00019469712,0.00007260834,0.00019124753,0.00054413703,0.0027771438,0.88432425,0.00068275805,0.00013387317,0.00023290495],"about_ca_topic_score_codex":0.00014034274,"about_ca_topic_score_gemma":0.000013731878,"teacher_disagreement_score":0.10570531,"about_ca_system_score_codex":0.000045047505,"about_ca_system_score_gemma":0.00014762832,"threshold_uncertainty_score":0.89042646},"labels":[],"label_agreement":null},{"id":"W2018706148","doi":"10.1371/journal.pone.0015041","title":"Ontogeny of Toll-Like Receptor Mediated Cytokine Responses of Human Blood Mononuclear Cells","year":2010,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Burroughs Wellcome Fund; Michael Smith Health Research BC; Canadian Child Health Clinician Scientist Program; Hospital for Sick Children; University of British Columbia; Children's Health Research Institute","keywords":"Immune system; Immunology; Innate immune system; Acquired immune system; Biology; Ontogeny; Immunity; Cytokine; Offspring; Peripheral blood mononuclear cell; Young adult; Physiology; Medicine; Internal medicine; Pregnancy; Endocrinology","score_opus":0.02035938565236872,"score_gpt":0.21794428212691916,"score_spread":0.19758489647455044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018706148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983781,0.00032460765,0.0000011978475,0.00008714863,0.00018925764,0.000223922,0.0000636885,0.00004683398,0.0006852721],"genre_scores_gemma":[0.995234,0.00010632766,0.00032038672,0.000025941725,0.000033251632,0.000010621977,0.000120403136,0.000021197216,0.004127876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883646,0.00022034242,0.00049710163,0.00016702278,0.000069123795,0.00020995164],"domain_scores_gemma":[0.9988075,0.0002358962,0.00028976423,0.00041036325,0.00023860534,0.000017867585],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037929512,0.00013235674,0.00039113703,0.00017730593,0.000079875346,0.0000038301655,0.00022899512,0.00029788018,0.0022538947],"category_scores_gemma":[0.00035813698,0.00012521331,0.00008043128,0.00011981649,0.00021252448,0.00007955727,0.00006532727,0.00029256835,0.00038777362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009943958,0.0012399349,0.0005356879,0.000057111945,0.0006093235,0.0000012514002,0.0004606391,1.2265275e-7,0.9952397,0.00015373452,0.0005938588,0.00011424687],"study_design_scores_gemma":[0.0012999835,0.00058017514,0.002668539,0.00007189334,0.00017960308,0.0000025545262,0.000057628487,0.0000011847777,0.993094,0.000022412221,0.0019006006,0.00012140823],"about_ca_topic_score_codex":0.0000852434,"about_ca_topic_score_gemma":0.000028545652,"teacher_disagreement_score":0.0034426039,"about_ca_system_score_codex":0.000007398267,"about_ca_system_score_gemma":0.000056677894,"threshold_uncertainty_score":0.9986582},"labels":[],"label_agreement":null},{"id":"W2018762139","doi":"10.1016/s0952-7915(02)00406-5","title":"Making and breaking tolerance","year":2002,"lang":"en","type":"review","venue":"Current Opinion in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":105,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research","funders":"","keywords":"Autoimmunity; Self Tolerance; Immunology; Biology; Immune system; Antigen; Innate immune system; Cell biology; Antigen presentation; Receptor; Immune tolerance; Central tolerance; Peripheral tolerance; T cell; Genetics","score_opus":0.12456492769589274,"score_gpt":0.38380897804804265,"score_spread":0.2592440503521499,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018762139","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000032735446,0.98586214,0.000033203516,0.000024854106,0.013066474,0.0005627842,0.000012669018,0.000072560375,0.00033260437],"genre_scores_gemma":[0.000089483896,0.99902636,0.00001374734,0.000005037927,0.00014151729,0.00017326577,0.0003049855,0.000043011827,0.000202616],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99698514,0.0008290209,0.0010240087,0.0005656435,0.00003378463,0.00056240417],"domain_scores_gemma":[0.998624,0.00033912036,0.00053150987,0.00045867165,0.00003682079,0.000009835493],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00031232327,0.0004956175,0.0015391235,0.0006999173,0.00015377226,0.00002982349,0.00037509893,0.00086503394,0.00033911396],"category_scores_gemma":[0.00011352684,0.00045537497,0.000228236,0.00033431136,0.00027250874,0.00014167518,0.0002703088,0.001264573,0.0008838508],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024056091,0.000055105083,0.000010182343,0.0044307676,0.00010721482,0.0000011482176,0.00017422024,1.6826517e-7,0.000022659202,0.0015896326,0.00078825006,0.9927966],"study_design_scores_gemma":[0.0005662614,0.000056586643,0.00006935471,0.021839304,0.000062180734,0.00041433485,0.00002003293,0.0000023010477,0.0000045720385,0.000039194456,0.9765194,0.00040644922],"about_ca_topic_score_codex":0.000008267227,"about_ca_topic_score_gemma":8.849819e-7,"teacher_disagreement_score":0.99239016,"about_ca_system_score_codex":0.00013420607,"about_ca_system_score_gemma":0.00009876871,"threshold_uncertainty_score":0.9998941},"labels":[],"label_agreement":null},{"id":"W2018994645","doi":"10.1046/j.1365-2249.2003.02191.x","title":"Modulation of cytokine release from colonic explants by bacterial antigens in inflammatory bowel disease","year":2003,"lang":"en","type":"article","venue":"Clinical & Experimental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Crohn's and Colitis Foundation of Canada; Medical Research Council Canada; Hospital Research Foundation","keywords":"Superantigen; Tumor necrosis factor alpha; Cytokine; Lipopolysaccharide; Proinflammatory cytokine; Immunology; Inflammatory bowel disease; Interleukin; Interleukin 1 receptor antagonist; Biology; Inflammation; Medicine; Receptor antagonist; Internal medicine; Receptor; T cell; Antagonist; Immune system","score_opus":0.018037176265499753,"score_gpt":0.2998681074264121,"score_spread":0.28183093116091235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2018994645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887596,0.008762784,0.000030122099,0.00006134909,0.001754988,0.00037115236,0.00008565892,0.000043380576,0.00013096722],"genre_scores_gemma":[0.9980742,0.00055462157,0.00003675178,0.00007971605,0.00003366852,0.00005268415,0.00093232025,0.000025013032,0.00021106846],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964731,0.0013319649,0.0012960945,0.00044616938,0.00005111733,0.00040156077],"domain_scores_gemma":[0.99861985,0.00041733572,0.00038731663,0.00048343133,0.000047163117,0.000044883618],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043589048,0.00025064874,0.0005255621,0.00012932082,0.00009062669,0.000010579525,0.00024019758,0.000517618,0.0014714441],"category_scores_gemma":[0.0004637897,0.00025539368,0.0001786508,0.00009472365,0.00054235733,0.00021044532,0.00010028255,0.00037648794,0.00038429457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004326788,0.0008587901,0.028959054,0.0000052710798,0.00014107423,0.000017867023,0.0002686411,0.000005176019,0.96378756,0.00044251818,0.0006137704,0.0005735114],"study_design_scores_gemma":[0.005380933,0.000469198,0.19843303,0.000049539813,0.000023159313,0.000007324186,0.00027595833,0.000015357404,0.7821183,0.00012417861,0.01284949,0.00025351692],"about_ca_topic_score_codex":0.000119100005,"about_ca_topic_score_gemma":0.000006531095,"teacher_disagreement_score":0.18166922,"about_ca_system_score_codex":0.00008566761,"about_ca_system_score_gemma":0.00015796018,"threshold_uncertainty_score":0.9999898},"labels":[],"label_agreement":null},{"id":"W2019339732","doi":"10.1038/nm.3681","title":"Regulation of astrocyte activation by glycolipids drives chronic CNS inflammation","year":2014,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":478,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University; Montreal Neurological Institute and Hospital","funders":"National Institute of Allergy and Infectious Diseases; National Institute on Aging","keywords":"Lactosylceramide; Astrocyte; Microglia; Neurodegeneration; Experimental autoimmune encephalomyelitis; Biology; Chemokine; Neuroinflammation; Inflammation; Immunology; Autocrine signalling; Cell biology; Neuroscience; Central nervous system; Medicine; Glycolipid; Receptor; Disease; Biochemistry; Pathology","score_opus":0.002942615874240947,"score_gpt":0.22556151842934835,"score_spread":0.2226189025551074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019339732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98352706,0.0020758202,0.007876442,0.0028198075,0.0007712075,0.00029020643,0.0000023380926,0.000070826594,0.0025662887],"genre_scores_gemma":[0.99721885,0.000062037405,0.00004499977,0.00007447001,0.0003436306,0.000010722225,0.0006888784,0.000010654747,0.0015457595],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990212,0.00020962024,0.00036391072,0.00015956804,0.00008306976,0.0001626294],"domain_scores_gemma":[0.9991305,0.0001760227,0.00030347923,0.00022767154,0.00015037254,0.000011952881],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044505572,0.00012962519,0.0002416565,0.00017269589,0.00008757021,0.0000029858488,0.00011217627,0.00047808845,0.00039460693],"category_scores_gemma":[0.00047724062,0.00010247856,0.00003834263,0.00018394564,0.00015291262,0.00018565757,0.000018914081,0.00038155032,0.000050139],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023699454,0.000010526141,0.00009777515,0.000035839177,0.000038194652,2.9022026e-8,0.00026089413,0.00001728663,0.955963,0.0029146583,0.0066586058,0.033766195],"study_design_scores_gemma":[0.0015455863,0.00039640148,0.016163453,0.00014453538,0.000028080884,0.000004080541,0.000041530162,0.00011296019,0.8263304,0.00020572783,0.15495056,0.00007668254],"about_ca_topic_score_codex":0.000019064473,"about_ca_topic_score_gemma":0.00000473703,"teacher_disagreement_score":0.14829195,"about_ca_system_score_codex":0.000078506106,"about_ca_system_score_gemma":0.00003932993,"threshold_uncertainty_score":0.43206692},"labels":[],"label_agreement":null},{"id":"W2019576909","doi":"10.1016/j.immuni.2012.10.014","title":"Innate Immune Function by Toll-like Receptors: Distinct Responses in Newborns and the Elderly","year":2012,"lang":"en","type":"review","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":559,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Innate immune system; Immune system; Biology; Toll-like receptor; Immunology; Innate lymphoid cell; Inflammation; Pattern recognition receptor; Disease; Neuroscience; Medicine; Internal medicine","score_opus":0.025378649510083295,"score_gpt":0.27800294384917357,"score_spread":0.2526242943390903,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019576909","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004894229,0.9911868,0.000020550353,0.00010875249,0.0020737532,0.0010468421,0.00003665001,0.000074405456,0.00055802823],"genre_scores_gemma":[0.0052473103,0.9839347,0.0000044138046,0.000028687311,0.000052254883,0.00024378356,0.0012052854,0.00005323462,0.009230318],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918146,0.006131029,0.0011112539,0.0003202167,0.00006195224,0.0005609315],"domain_scores_gemma":[0.9965454,0.001845775,0.0006234571,0.00089632586,0.00006470444,0.000024371984],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0030085878,0.00055865146,0.0015619133,0.00031709447,0.0004996219,0.00006468041,0.0005160236,0.0009063277,0.0003989717],"category_scores_gemma":[0.00046127453,0.00036628454,0.00034326105,0.00041171105,0.00064146466,0.0002850242,0.00031017867,0.0017475396,0.00060013746],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001679621,0.00009326464,0.000013177576,0.0007741427,0.00034474453,0.0000012978434,0.00040898076,1.9817683e-8,0.00038110564,0.00018193219,0.0016321498,0.99448955],"study_design_scores_gemma":[0.0016905962,0.000192958,0.000326375,0.0015411669,0.00060489576,0.00011378666,0.00015273689,1.464134e-7,0.000091680246,0.000049830578,0.9948486,0.00038719195],"about_ca_topic_score_codex":0.0011278796,"about_ca_topic_score_gemma":0.000076048425,"teacher_disagreement_score":0.99410236,"about_ca_system_score_codex":0.00013712414,"about_ca_system_score_gemma":0.00019140691,"threshold_uncertainty_score":0.9998789},"labels":[],"label_agreement":null},{"id":"W2019633544","doi":"10.1093/humrep/del377","title":"Toll-like receptor 4 polymorphisms and idiopathic chromosomally normal miscarriage","year":2006,"lang":"en","type":"article","venue":"Human Reproduction","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Child and Family Research Institute; BC Children's Hospital","funders":"","keywords":"TLR4; Single-nucleotide polymorphism; Genotype; Biology; Fetus; Andrology; Recurrent miscarriage; Oxytocin receptor; Miscarriage; Receptor; Pregnancy; Immunology; Umbilical cord; Internal medicine; Endocrinology; Genetics; Gene; Medicine","score_opus":0.0076968840108740675,"score_gpt":0.2075413802616173,"score_spread":0.19984449625074324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019633544","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906386,0.005548949,0.000039820687,0.00041336718,0.0011851904,0.0002056077,0.0000023214911,0.00014723971,0.0018188704],"genre_scores_gemma":[0.98071057,0.000044993223,0.000040372237,0.00002602195,0.0004708756,0.000021726388,0.00018009375,0.000017786258,0.018487548],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987544,0.00018508777,0.00033426413,0.000444218,0.00004075075,0.00024127912],"domain_scores_gemma":[0.9993929,0.0000102128215,0.00014433835,0.0003837822,0.000057886326,0.000010870913],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046222797,0.00015160965,0.00018398477,0.000122039804,0.00042422282,0.000029255474,0.000080474536,0.00018986955,0.00040225298],"category_scores_gemma":[0.00003343847,0.00014922947,0.000055458135,0.0000858955,0.00015708925,0.00018683549,0.000043190892,0.00019212939,0.00039922848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013734969,0.000049075545,0.000562925,0.000015419617,0.000024426947,0.0000029889181,0.00017398717,0.0000047911267,0.9904133,0.0013090832,0.0032148443,0.0040917764],"study_design_scores_gemma":[0.0009079266,0.00022654422,0.036590997,0.000037859412,0.000034573924,0.00039897216,0.00007267063,0.0000012746697,0.886349,0.0003013665,0.074838325,0.00024045764],"about_ca_topic_score_codex":0.00019539215,"about_ca_topic_score_gemma":0.00002289626,"teacher_disagreement_score":0.1040643,"about_ca_system_score_codex":0.00003681269,"about_ca_system_score_gemma":0.000024535495,"threshold_uncertainty_score":0.6085401},"labels":[],"label_agreement":null},{"id":"W2019929978","doi":"10.1016/j.ijpharm.2015.03.028","title":"Design and preclinical characterization of a novel vaccine adjuvant formulation consisting of a synthetic TLR4 agonist in a thermoreversible squalene emulsion","year":2015,"lang":"en","type":"article","venue":"International Journal of Pharmaceutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Adjuvant; Squalene; Agonist; Chemistry; Pharmacology; Receptor; Medicine; Immunology; Biochemistry","score_opus":0.09099088089401106,"score_gpt":0.36577403135264563,"score_spread":0.27478315045863455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019929978","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97695816,0.0005880252,0.021473447,0.00035789676,0.00045872718,0.00012978262,0.000007878136,0.000003156222,0.000022952183],"genre_scores_gemma":[0.99871176,0.00023585565,0.00092901464,0.000036387653,0.000027897391,0.0000011216291,0.000021996686,0.000006365828,0.000029580571],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987871,0.00018705605,0.00077144377,0.00007013841,0.00010256468,0.00008170036],"domain_scores_gemma":[0.998216,0.00028897685,0.00083981425,0.000054134616,0.00058258517,0.000018538954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009998879,0.000077130964,0.0002316943,0.00024856298,0.000015904538,0.000006897477,0.00013214437,0.00008646944,0.000026305253],"category_scores_gemma":[0.00038358846,0.000067370755,0.00004732013,0.000075507094,0.000043042706,0.00020266512,0.00003626009,0.00015735396,0.0000016325146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028474412,0.00022880246,0.0026816754,0.00001829009,0.00012411372,0.000004197095,0.0009304014,0.0004942724,0.9828699,0.00011885657,0.000007990625,0.009674013],"study_design_scores_gemma":[0.0056453613,0.00025890855,0.010218041,0.00028498267,0.0000707521,0.0002061306,0.00012945668,0.007325363,0.9751369,0.00009285884,0.00056199805,0.00006927825],"about_ca_topic_score_codex":0.0000057608854,"about_ca_topic_score_gemma":8.516198e-7,"teacher_disagreement_score":0.021753645,"about_ca_system_score_codex":0.00005292266,"about_ca_system_score_gemma":0.00010433096,"threshold_uncertainty_score":0.27472997},"labels":[],"label_agreement":null},{"id":"W2019982696","doi":"10.1016/j.surg.2013.03.006","title":"Lipopolysaccharide-induced toll-like receptor 4 signaling enhances the migratory ability of human esophageal cancer cells in a selectin-dependent manner","year":2013,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"TLR4; Medicine; Cancer research; Toll-like receptor; Cell adhesion molecule; Fibronectin; Cell biology; Immunology; Receptor; Biology; Internal medicine; Innate immune system; Extracellular matrix","score_opus":0.015358032985876104,"score_gpt":0.24808084891382906,"score_spread":0.23272281592795296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2019982696","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965358,0.0016566244,0.0000023785992,0.00019007112,0.0012029932,0.00032698363,0.000005225961,0.000030703908,0.000049224083],"genre_scores_gemma":[0.9988174,0.000080679536,0.000003462672,0.00009302654,0.000054293014,0.00015667651,0.000014805697,0.000013706788,0.00076595315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981402,0.00060664135,0.0005972953,0.00024903097,0.00006273873,0.0003440488],"domain_scores_gemma":[0.9987055,0.0006321528,0.0002547807,0.0002839341,0.000109022476,0.000014591031],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010330831,0.00016490466,0.00035865745,0.00015608774,0.00016000491,0.00001668332,0.00017522024,0.00020473497,0.0017737609],"category_scores_gemma":[0.000075100725,0.000121220975,0.0001437425,0.00015081435,0.00011232952,0.00018266829,0.00004567196,0.00031485074,0.0002587677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008383144,0.00006811945,0.0061971955,0.000029406536,0.00006734632,0.0000011635583,0.00081844995,0.000004818964,0.9880347,0.00001866798,0.0021999278,0.0024763376],"study_design_scores_gemma":[0.00017793279,0.000033482505,0.012791582,0.000054514996,0.0000131795305,0.0000021654162,0.00037631605,0.0000017235297,0.9860091,0.00004879352,0.00036141791,0.0001297989],"about_ca_topic_score_codex":0.0040902533,"about_ca_topic_score_gemma":0.000328062,"teacher_disagreement_score":0.006594387,"about_ca_system_score_codex":0.00007086176,"about_ca_system_score_gemma":0.00015680058,"threshold_uncertainty_score":0.9991388},"labels":[],"label_agreement":null},{"id":"W2021443659","doi":"10.1016/j.mvr.2013.09.001","title":"Desmopressin improves intestinal functional capillary density and decreases leukocyte activation in experimental endotoxemia","year":2013,"lang":"en","type":"article","venue":"Microvascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Microcirculation; Intravital microscopy; Lipopolysaccharide; Internal medicine; Sepsis; Desmopressin; Endocrinology; Medicine; Arteriole; Inflammation; Vasopressin","score_opus":0.033021691516180396,"score_gpt":0.2863005422367953,"score_spread":0.2532788507206149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021443659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522245,0.0037383514,0.000102907434,0.00013251805,0.00006528246,0.0005080695,9.878628e-9,0.000030172469,0.00020022389],"genre_scores_gemma":[0.9987926,0.000077853256,0.00011979608,0.000039521965,0.000027509332,0.00014653112,0.00009642908,0.000014987658,0.00068478053],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982306,0.00065971003,0.00024085767,0.00033246935,0.00010645863,0.00042991719],"domain_scores_gemma":[0.9992149,0.00027881365,0.00004171583,0.0002448608,0.00018751848,0.000032195676],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082422834,0.00014378503,0.00018162963,0.00032756958,0.00030017932,0.0000698047,0.0001280726,0.00018223112,0.0005184199],"category_scores_gemma":[0.00032967268,0.00013207005,0.00006391486,0.00019093366,0.00034176288,0.00035961487,0.00020363074,0.00049177656,0.0003876001],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027242868,0.000102400416,0.00212628,0.000017121522,0.0000553821,0.0000065004187,0.00022140039,8.9870787e-7,0.9914663,0.000089692876,0.0010475481,0.0045940923],"study_design_scores_gemma":[0.0011721328,0.00010898625,0.038443673,0.000056467103,0.000004573831,0.00015809671,0.00058471103,0.000021929392,0.9576975,0.00010658999,0.0015168417,0.00012846534],"about_ca_topic_score_codex":0.0021392654,"about_ca_topic_score_gemma":0.000023694776,"teacher_disagreement_score":0.036317393,"about_ca_system_score_codex":0.00015603252,"about_ca_system_score_gemma":0.00013279277,"threshold_uncertainty_score":0.56763345},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"}],"label_agreement":"agree"},{"id":"W2021469995","doi":"10.1096/fj.10-173856","title":"Novel 5‐lipoxygenase isoforms affect the biosynthesis of 5‐lipoxygenase products","year":2010,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Atlantic Cancer Research Institute; Fisheries and Oceans Canada; Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; Université de Moncton","funders":"Canadian Institutes of Health Research","keywords":"Gene isoform; Alternative splicing; Exon; Arachidonate 5-lipoxygenase; Lipoxygenase; Biosynthesis; Biology; Molecular biology; RNA splicing; Biochemistry; Enzyme; Gene; RNA; Arachidonic acid","score_opus":0.01212945281965123,"score_gpt":0.22524455418352127,"score_spread":0.21311510136387005,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021469995","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99282306,0.00084196765,0.00022428333,0.0039250073,0.0015247306,0.00026988218,0.000014603906,0.000023498718,0.0003529576],"genre_scores_gemma":[0.99808466,0.00011241866,0.000105880696,0.00013980012,0.00023627955,0.00000840453,0.000010250062,0.000017891234,0.0012844144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998696,0.00028962415,0.00042403492,0.00014004567,0.00008633807,0.00036390006],"domain_scores_gemma":[0.99840355,0.00040769667,0.00039193666,0.0005952614,0.00017795303,0.000023604485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002109652,0.00018153971,0.00022533764,0.00011207768,0.00069199875,0.00004052136,0.0006297078,0.00016208131,0.00059735216],"category_scores_gemma":[0.00075837475,0.00008289377,0.00017822457,0.00021966765,0.00043150398,0.00017337022,0.00008323581,0.00094864704,0.00034321667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035345028,0.00009276278,0.000067133136,0.000009927016,0.0001832689,0.000002843949,0.000769222,0.0000063802754,0.98605627,0.00048350904,0.0023298133,0.009645439],"study_design_scores_gemma":[0.0006757545,0.0001274776,0.0044532274,0.000026330297,0.00007884233,0.001489413,0.00040209742,0.00001055203,0.97974646,0.00009878486,0.012772293,0.00011876251],"about_ca_topic_score_codex":0.000046475936,"about_ca_topic_score_gemma":0.000021186881,"teacher_disagreement_score":0.010442479,"about_ca_system_score_codex":0.000016832068,"about_ca_system_score_gemma":0.00017865108,"threshold_uncertainty_score":0.65405875},"labels":[],"label_agreement":null},{"id":"W2021737653","doi":"10.1016/j.joca.2015.02.470","title":"Relationship between the gut microbiota, lipopolysaccharide, inflammation, and metabolic osteoarthritis development: Studies in a rat model","year":2015,"lang":"en","type":"article","venue":"Osteoarthritis and Cartilage","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Inflammation; Gut flora; Osteoarthritis; Lipopolysaccharide; Medicine; Biology; Immunology; Pathology","score_opus":0.04056611466921145,"score_gpt":0.267415170871289,"score_spread":0.22684905620207757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2021737653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.928947,0.06962669,0.000014846711,0.0005096035,0.00020261048,0.0003731384,0.000011719528,0.00003932971,0.00027508585],"genre_scores_gemma":[0.99792856,0.0005598865,0.000099830475,0.000065058695,0.00004968062,0.00010176522,0.0000712668,0.00001809444,0.0011058794],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984194,0.00032113199,0.0005618728,0.000293654,0.00006581513,0.00033812324],"domain_scores_gemma":[0.9992083,0.00025405127,0.00013927191,0.00023001315,0.00012506214,0.000043301112],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085888244,0.00022599763,0.00037776213,0.00017464052,0.00038646228,0.00006832261,0.00011605888,0.00020306352,0.0000086540485],"category_scores_gemma":[0.00032861557,0.00018552913,0.000040064446,0.00015800199,0.0003734105,0.00038937264,0.00015181364,0.00027434068,0.00007484859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025331954,0.000021527847,0.05078888,0.000065203414,0.000032150474,0.000021079339,0.025576867,0.00002737185,0.83007795,0.0051609827,0.00096895266,0.08700572],"study_design_scores_gemma":[0.008131449,0.00034131293,0.020204106,0.0003529458,0.0001317165,0.00031567996,0.008633378,0.000007627017,0.9128898,0.002672783,0.045541678,0.00077752094],"about_ca_topic_score_codex":0.000011646671,"about_ca_topic_score_gemma":0.00033062822,"teacher_disagreement_score":0.0862282,"about_ca_system_score_codex":0.000031275016,"about_ca_system_score_gemma":0.00011672304,"threshold_uncertainty_score":0.75656587},"labels":[],"label_agreement":null},{"id":"W2022097289","doi":"10.1016/j.dci.2008.09.001","title":"Molecular characterization, expression and functional analysis of goldfish (Carassius aurutus L.) interferon gamma","year":2008,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":133,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Proinflammatory cytokine; Recombinant DNA; Spleen; Immune system; Interferon gamma; Nitric oxide; Carassius; Downregulation and upregulation; Interferon; Cytokine; Tumor necrosis factor alpha; Molecular biology; Immunology; Inflammation; Endocrinology; Biochemistry; Gene; Fish <Actinopterygii>","score_opus":0.023851595378050885,"score_gpt":0.2378242759379915,"score_spread":0.21397268055994062,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022097289","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556965,0.0010872976,0.002130443,0.000052337364,0.00031049707,0.00019398009,0.00002481067,0.0000430796,0.0005879237],"genre_scores_gemma":[0.99707514,0.00016002597,0.00016025855,0.000058750313,0.0000062678437,0.000041834897,0.0018944079,0.0000100361885,0.000593264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984432,0.00034069575,0.00056657655,0.00032756728,0.000058736503,0.00026321644],"domain_scores_gemma":[0.99925864,0.000105299965,0.00028645943,0.00017110669,0.00016093095,0.000017593165],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001215726,0.00023240519,0.0005875986,0.0005489917,0.00024349574,0.000007938534,0.00013523606,0.00021698957,0.0006808853],"category_scores_gemma":[0.000027297145,0.00022031792,0.000095531905,0.00052268885,0.00052060065,0.0002053745,0.00015432792,0.00020555772,0.00011798964],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008867347,0.00009838005,0.01187862,0.000004861373,0.001784965,0.000006968798,0.0026528866,0.0000109460125,0.9815413,0.00031983646,0.0001847313,0.0006298208],"study_design_scores_gemma":[0.00067179353,0.00011537754,0.4479638,0.000013063131,0.00008457689,0.0000942154,0.00030704413,0.000018627183,0.5477306,0.0000060258967,0.0028522627,0.00014258586],"about_ca_topic_score_codex":0.00002822936,"about_ca_topic_score_gemma":0.0000070817932,"teacher_disagreement_score":0.4360852,"about_ca_system_score_codex":0.00008465039,"about_ca_system_score_gemma":0.000109787325,"threshold_uncertainty_score":0.89843035},"labels":[],"label_agreement":null},{"id":"W2022135107","doi":"10.1016/j.immuni.2007.03.009","title":"Nod1-Mediated Innate Immune Recognition of Peptidoglycan Contributes to the Onset of Adaptive Immunity","year":2007,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":332,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto; University of New Brunswick","funders":"Takeda Oncology","keywords":"Biology; Peptidoglycan; Innate immune system; NOD1; Acquired immune system; Immunity; Immunology; Immune system; Immune recognition; Pattern recognition receptor; NOD2; Virology; Genetics; Gene","score_opus":0.017777860316982298,"score_gpt":0.2480863898991355,"score_spread":0.2303085295821532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022135107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940966,0.0022940647,0.0010127231,0.0005445166,0.00032941948,0.00058656465,0.00019109476,0.00004628511,0.00089873583],"genre_scores_gemma":[0.9987818,0.00011020966,0.00006454789,0.00019681775,0.00001332171,0.000017243878,0.0006098382,0.000017047649,0.00018918143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974503,0.00099515,0.0009283199,0.00015327109,0.00007429597,0.00039868112],"domain_scores_gemma":[0.99690133,0.0012431286,0.0005254922,0.0006202628,0.00068479276,0.000024989038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028915803,0.00021396192,0.00048069723,0.00026020277,0.00029363026,0.000007990567,0.00054054096,0.00029291905,0.00027472028],"category_scores_gemma":[0.0015408865,0.0001687028,0.0001667148,0.0006646651,0.00043708924,0.00013521429,0.00022885151,0.00063199666,0.0003256916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050422796,0.00021451303,0.00067509996,0.000027504186,0.00037349216,0.0000015076738,0.0033668918,0.000008858907,0.97458917,0.00013081747,0.0005040091,0.015065854],"study_design_scores_gemma":[0.0014853021,0.0005766569,0.13795938,0.000115516326,0.000067627836,0.000013270866,0.0031728526,0.0000056720096,0.8519958,0.00011299181,0.0043265135,0.00016839085],"about_ca_topic_score_codex":0.0027353063,"about_ca_topic_score_gemma":0.00022842943,"teacher_disagreement_score":0.13728428,"about_ca_system_score_codex":0.000060431506,"about_ca_system_score_gemma":0.0001232638,"threshold_uncertainty_score":0.68795},"labels":[],"label_agreement":null},{"id":"W2022227225","doi":"10.1016/j.jaci.2010.05.013","title":"Impaired T-cell receptor activation in IL-1 receptor–associated kinase-4–deficient patients","year":2010,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Receptor; Cell biology; Chemistry; Cancer research; Biology; Medicine; Internal medicine","score_opus":0.012018318073315179,"score_gpt":0.26248016920524264,"score_spread":0.2504618511319275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022227225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951731,0.0004140866,0.000016211872,0.00069295225,0.0033421942,0.00012645026,0.000003935671,0.000015312356,0.00021578003],"genre_scores_gemma":[0.997382,0.0017202694,0.0000744916,0.00014069516,0.00006440586,0.0000035448488,0.000077682285,0.000015095131,0.00052180776],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99724317,0.00075325835,0.0013956663,0.00020974861,0.00006405871,0.00033409853],"domain_scores_gemma":[0.99775153,0.0006635117,0.0010109667,0.00019805889,0.00034151983,0.000034422283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013502752,0.00018395807,0.000519296,0.00025512133,0.00012594729,0.000016073402,0.00025130156,0.0008773203,0.00058381783],"category_scores_gemma":[0.0012634489,0.00015445928,0.00019643857,0.00017189079,0.00030654328,0.00024180963,0.00006865002,0.0014996353,0.00014021852],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003164175,0.0018481502,0.016142061,0.000004150292,0.00062898005,0.0000021564101,0.00044220436,0.0000024101528,0.95782053,0.00023825305,0.0028384952,0.016868431],"study_design_scores_gemma":[0.0176045,0.005317018,0.6211694,0.00015364758,0.00007057241,0.00002282865,0.0006277027,0.0000110258525,0.20265017,0.0003154244,0.15156461,0.0004931023],"about_ca_topic_score_codex":0.00003249156,"about_ca_topic_score_gemma":0.000050937782,"teacher_disagreement_score":0.75517035,"about_ca_system_score_codex":0.000056111017,"about_ca_system_score_gemma":0.00012884931,"threshold_uncertainty_score":0.6766698},"labels":[],"label_agreement":null},{"id":"W2022246343","doi":"10.1097/shk.0b013e318299f774","title":"Perturbed Mononuclear Phagocyte System in Severely Burned and Septic Patients","year":2013,"lang":"en","type":"review","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Sunnybrook Health Science Centre","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research","keywords":"Sepsis; Immune system; Immunology; Mononuclear phagocyte system; Medicine; Immunosuppression; Acquired immune system; Burn injury; Severe burn; Innate immune system; Internal medicine","score_opus":0.017777058251863966,"score_gpt":0.252599918441704,"score_spread":0.23482286018984003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022246343","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004499044,0.9924398,0.0000034143395,0.000006264485,0.00046166973,0.0010018692,0.000012212076,0.000059411905,0.001516313],"genre_scores_gemma":[0.0016144024,0.9912106,0.000017458844,0.00001625126,0.000025455818,0.0000711975,0.00033163355,0.000047838043,0.0066651856],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981963,0.0005058953,0.0006066708,0.000333708,0.00003300454,0.0003244343],"domain_scores_gemma":[0.99922246,0.00013919012,0.00026929216,0.00030298452,0.000046656867,0.000019439522],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001770687,0.0003462564,0.0011107064,0.000247601,0.00008346519,0.000028644114,0.0001931155,0.00067598454,0.00020122433],"category_scores_gemma":[0.000053122745,0.00026714534,0.00017131165,0.0001305453,0.00006116729,0.00011655691,0.000113735594,0.00042754394,0.0034589202],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000085001906,0.0000460425,0.000010275495,0.007555456,0.00028258227,0.000007930192,0.00025737568,1.710798e-7,0.00004108468,0.0001482252,0.0018085458,0.9897573],"study_design_scores_gemma":[0.0008120289,0.000104148414,0.00010970907,0.00493397,0.00020496086,0.00005827874,0.000052284468,0.0000053035096,0.000033889624,0.00000684662,0.99336016,0.0003184455],"about_ca_topic_score_codex":0.000060856746,"about_ca_topic_score_gemma":0.000003643238,"teacher_disagreement_score":0.9915516,"about_ca_system_score_codex":0.0001754468,"about_ca_system_score_gemma":0.00008878642,"threshold_uncertainty_score":0.99997807},"labels":[],"label_agreement":null},{"id":"W2022267960","doi":"10.1164/rccm.200302-303oc","title":"Modulation of Bacterial Growth by Tumor Necrosis Factor-α <i>In Vitro</i> and <i>In Vivo</i>","year":2003,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital; Mount Sinai Hospital","funders":"","keywords":"Tumor necrosis factor alpha; In vivo; Immunology; Cytokine; In vitro; Medicine; Chemokine; Biology; Immune system","score_opus":0.007847073544514362,"score_gpt":0.24896820269223072,"score_spread":0.24112112914771636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022267960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99339575,0.005913938,0.000060546376,0.00024805282,0.0001793902,0.0000598651,0.000010822881,0.0000025695244,0.00012904598],"genre_scores_gemma":[0.9994437,0.000116093725,0.000034234636,0.00036187615,0.000026727275,0.0000017707471,0.0000030299614,0.0000071104255,0.000005418274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985814,0.00049966783,0.0005569446,0.000120680976,0.000064714324,0.00017657895],"domain_scores_gemma":[0.9991739,0.000371155,0.00018544703,0.000072055096,0.00015533541,0.000042119525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042059075,0.000117395,0.0004685767,0.00018550894,0.000036325357,0.0000048628185,0.000055933924,0.00006196601,0.00008889957],"category_scores_gemma":[0.00073129794,0.00009271036,0.0000348572,0.00015945839,0.00075122516,0.00013874185,0.000011160581,0.00023035407,5.0410296e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010866292,0.000031210147,0.0066651073,0.000040214025,0.000011808952,0.000013477223,0.00074631337,2.058427e-7,0.9844936,0.00019755129,0.000115157665,0.00659873],"study_design_scores_gemma":[0.0039567123,0.0033949306,0.016849797,0.00024046366,0.000052294505,0.00015852368,0.0050750296,0.0000011464144,0.96103585,0.00013723428,0.008917086,0.00018092577],"about_ca_topic_score_codex":0.000040793228,"about_ca_topic_score_gemma":0.0000036405975,"teacher_disagreement_score":0.023457738,"about_ca_system_score_codex":0.00002633972,"about_ca_system_score_gemma":0.000055030996,"threshold_uncertainty_score":0.37806186},"labels":[],"label_agreement":null},{"id":"W2022363056","doi":"10.1007/s00251-004-0672-3","title":"The dominant MHC class I gene is adjacent to the polymorphic TAP2 gene in the duck, Anas platyrhynchos","year":2004,"lang":"en","type":"article","venue":"Immunogenetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Heritage Foundation for Medical Research","keywords":"Biology; Genetics; MHC class I; Major histocompatibility complex; Gene; Locus (genetics); Complementary DNA; Molecular biology; Southern blot; CD74; cDNA library","score_opus":0.010679030989006912,"score_gpt":0.2313696410139459,"score_spread":0.22069061002493898,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022363056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9410899,0.04437907,0.00013355314,0.012218857,0.0009984215,0.0009873116,0.000020934529,0.000019438972,0.00015248223],"genre_scores_gemma":[0.9918375,0.004635216,0.00006450149,0.002002882,0.00010292931,0.0001772316,0.000045885736,0.00002940441,0.0011044648],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978117,0.0005061991,0.00058633566,0.00030056876,0.00012939588,0.0006658098],"domain_scores_gemma":[0.9982332,0.00027295316,0.00016469952,0.0012207829,0.00008839726,0.000019993897],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010414912,0.00028565922,0.00023860953,0.00009751233,0.0008596738,0.000093656236,0.0011299478,0.00024752694,0.00006612682],"category_scores_gemma":[0.000097945536,0.00014765942,0.00015460778,0.00040333346,0.00026840676,0.00005011431,0.00020913567,0.00046673208,0.0010849831],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006055904,0.00011284676,0.000115349576,0.000004014181,0.000168907,0.000019981557,0.009450067,0.0006963572,0.97269124,0.00044991617,0.0022081546,0.0134775555],"study_design_scores_gemma":[0.001178654,0.00025960142,0.008136281,0.000023147175,0.000041592342,0.00022532142,0.0012429872,0.000007858945,0.6619136,0.00012117841,0.32665816,0.00019166636],"about_ca_topic_score_codex":0.00036526532,"about_ca_topic_score_gemma":0.00024280389,"teacher_disagreement_score":0.32445,"about_ca_system_score_codex":0.00013470791,"about_ca_system_score_gemma":0.00019558269,"threshold_uncertainty_score":0.9996928},"labels":[],"label_agreement":null},{"id":"W2022651196","doi":"10.1016/j.immuni.2005.09.016","title":"Human TLR-7-, -8-, and -9-Mediated Induction of IFN-α/β and -λ Is IRAK-4 Dependent and Redundant for Protective Immunity to Viruses","year":2005,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":272,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto; Child and Family Research Institute","funders":"","keywords":"Biology; Immunity; Virology; Innate immune system; Immunology; Microbiology; Immune system","score_opus":0.025545709103200493,"score_gpt":0.2871475934912167,"score_spread":0.26160188438801624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022651196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99630964,0.002151365,0.000118463104,0.0003408822,0.00007988883,0.0008283244,0.000043190594,0.0000338923,0.00009437967],"genre_scores_gemma":[0.99918044,0.00014372902,0.00014450031,0.00012650152,0.00001830024,0.00007483947,0.00003834675,0.0000136536655,0.00025968326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989181,0.00031518578,0.0003334068,0.00019054643,0.000033015564,0.00020973741],"domain_scores_gemma":[0.9992592,0.00015501521,0.00016048782,0.00025718176,0.00014162043,0.000026523503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000625844,0.00016387324,0.0002757177,0.00017589565,0.00049487274,0.000021578722,0.000099421486,0.00022191677,0.000044103002],"category_scores_gemma":[0.00026848336,0.00015358684,0.000032629847,0.000098397744,0.00025649407,0.00022672924,0.0001616589,0.0003031897,0.000011609883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060478196,0.000091077934,0.00040475003,0.000044718545,0.0001163338,1.7683098e-7,0.0041997894,9.145417e-7,0.9685774,0.00012590746,0.000116555646,0.025717592],"study_design_scores_gemma":[0.0018435178,0.0007590348,0.09436915,0.00006447379,0.000053507407,0.000047852784,0.0013994535,0.000006286426,0.8934758,0.00031376662,0.0074632545,0.00020395193],"about_ca_topic_score_codex":0.0013078267,"about_ca_topic_score_gemma":0.00019079357,"teacher_disagreement_score":0.0939644,"about_ca_system_score_codex":0.000036122798,"about_ca_system_score_gemma":0.000036587557,"threshold_uncertainty_score":0.6263089},"labels":[],"label_agreement":null},{"id":"W2022901080","doi":"10.1155/2010/437246","title":"Toll-Like Receptors: Role in Dermatological Disease","year":2010,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Receptor; Pathogen-associated molecular pattern; Pattern recognition receptor; Innate immune system; Biology; Immunology; Immune system; Toll-like receptor; Genetics","score_opus":0.003610841251439567,"score_gpt":0.21016724724394079,"score_spread":0.20655640599250122,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2022901080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969563,0.00032330834,0.000026429638,0.0004508131,0.0014811137,0.00022800067,0.0000022440126,0.000053010965,0.00047881168],"genre_scores_gemma":[0.9994009,0.000043673364,0.00007548085,0.000025640038,0.000055943725,0.000042435513,0.00016897357,0.000008986671,0.00017796567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988879,0.00016514154,0.00050700194,0.000160192,0.00006198204,0.00021778833],"domain_scores_gemma":[0.99930596,0.00015087538,0.00019743688,0.00024487387,0.00007056847,0.00003026617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000390516,0.00012775439,0.0002143213,0.00024060195,0.000053404405,0.0000081213575,0.00016954086,0.00026396586,0.00061405887],"category_scores_gemma":[0.00058802025,0.00011256358,0.00006815035,0.00015590056,0.00013120566,0.00025958437,0.00004252935,0.00030715304,0.00039314016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004144474,0.00006828438,0.06679445,0.000032712443,0.000020564807,0.000005480752,0.00078379095,0.000012772338,0.9137694,0.0026185266,0.0007266358,0.014752882],"study_design_scores_gemma":[0.0015804583,0.00004988505,0.16464959,0.000044937253,0.00002316862,0.000016473206,0.00029933784,0.00010423333,0.78295785,0.0010793994,0.048945133,0.00024951267],"about_ca_topic_score_codex":0.000022333534,"about_ca_topic_score_gemma":0.00005236537,"teacher_disagreement_score":0.13081159,"about_ca_system_score_codex":0.00001998245,"about_ca_system_score_gemma":0.00008419833,"threshold_uncertainty_score":0.6723514},"labels":[],"label_agreement":null},{"id":"W2023142724","doi":"10.3389/fcimb.2013.00003","title":"Recognition of lipid A variants by the TLR4-MD-2 receptor complex","year":2013,"lang":"en","type":"review","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":271,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Lipid A; TLR4; Biology; Receptor; Lipopolysaccharide; Innate immune system; Immune system; Pattern recognition receptor; Toll-like receptor; Signal transduction; Cell biology; Immunology; Biochemistry","score_opus":0.025657665282704686,"score_gpt":0.2467829942720737,"score_spread":0.221125328989369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023142724","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.001640056,0.992441,0.0011217837,0.00003149013,0.0031388162,0.0010990944,0.0001852675,0.00003185804,0.0003106164],"genre_scores_gemma":[0.00012198063,0.9929417,0.00015075295,0.0000393894,0.000069068905,0.0001420678,0.00549555,0.000034685356,0.0010048564],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.996492,0.0016860244,0.0009813047,0.00043994997,0.000018192743,0.00038249214],"domain_scores_gemma":[0.9987067,0.00019302266,0.00067601836,0.00032401385,0.000083018356,0.000017220973],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062005076,0.0004176783,0.0014018966,0.00041668338,0.00017096948,0.000020015616,0.00021775719,0.0011732319,0.00090433314],"category_scores_gemma":[0.00009059127,0.00029842212,0.00029041027,0.0003028593,0.00048736893,0.0001172116,0.00010609813,0.00070284883,0.00043259197],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005042907,0.00009888399,0.000036558715,0.001178402,0.000375772,4.3772897e-7,0.00009410498,1.0047344e-7,0.14497241,0.000013368434,0.20465429,0.64852524],"study_design_scores_gemma":[0.0006497957,0.00017292736,0.000006428817,0.0008160365,0.00021844562,0.00013730398,0.000036424382,0.0000012246586,0.008237067,0.00003417667,0.98938394,0.00030623237],"about_ca_topic_score_codex":0.00017702635,"about_ca_topic_score_gemma":0.0000038159997,"teacher_disagreement_score":0.78472966,"about_ca_system_score_codex":0.00010051117,"about_ca_system_score_gemma":0.00009342571,"threshold_uncertainty_score":0.9999468},"labels":[],"label_agreement":null},{"id":"W2023269967","doi":"10.1016/j.jneuroim.2005.06.016","title":"Toll-like receptor-2 deficiency is associated with enhanced brain TNF gene expression during pneumococcal meningitis","year":2005,"lang":"en","type":"article","venue":"Journal of Neuroimmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"TLR2; CD14; Meningitis; Toll-like receptor; Tumor necrosis factor alpha; Biology; Receptor; Inflammation; Immunology; Gene expression; Gene; Medicine; TLR4; Innate immune system; Genetics","score_opus":0.008411805699659788,"score_gpt":0.22228456383296666,"score_spread":0.21387275813330686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023269967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943611,0.0023437056,0.00018096427,0.0018595046,0.00078417914,0.0001417249,0.0000052490004,0.00004841001,0.00027515262],"genre_scores_gemma":[0.9969165,0.00034603942,0.0001694398,0.00017145366,0.0000712089,0.0000066916728,0.000019388213,0.00003264167,0.002266666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976484,0.0006167956,0.0008432358,0.00026520973,0.0001043354,0.0005220154],"domain_scores_gemma":[0.99817467,0.00031636158,0.00092260557,0.0002948211,0.00026259065,0.000028948582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004028916,0.00026216812,0.00053736736,0.00036038907,0.00031453266,0.000025627196,0.0003937799,0.00036750187,0.0006666977],"category_scores_gemma":[0.00035443896,0.00021128438,0.00017002695,0.00022703572,0.00020138526,0.00042249553,0.000100531906,0.0008128162,0.00020650082],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001513939,0.00016940272,0.00012170904,0.000005082303,0.00015133538,0.00005058104,0.0009324399,0.00005210022,0.99267787,0.000011867216,0.0010216804,0.0032920095],"study_design_scores_gemma":[0.003154771,0.0012034616,0.03737263,0.00012103505,0.000041960768,0.0022071847,0.00014096293,0.0000022032157,0.94548476,0.000011686967,0.010039575,0.00021978482],"about_ca_topic_score_codex":0.0000031214975,"about_ca_topic_score_gemma":0.0000023996756,"teacher_disagreement_score":0.04719311,"about_ca_system_score_codex":0.00014194711,"about_ca_system_score_gemma":0.00013405955,"threshold_uncertainty_score":0.8615927},"labels":[],"label_agreement":null},{"id":"W2023455126","doi":"10.1038/nri3515","title":"Scavenger receptors in homeostasis and immunity","year":2013,"lang":"en","type":"review","venue":"Nature reviews. Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":858,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Scavenger receptor; Receptor; Immune receptor; Biology; Immune system; Cell biology; Rhodopsin-like receptors; Class C GPCR; Immunology; Biochemistry; Metabotropic receptor; Lipoprotein; Cholesterol","score_opus":0.025092155263656223,"score_gpt":0.30924630237454453,"score_spread":0.2841541471108883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023455126","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012280069,0.99410146,0.0000018981538,0.000093402756,0.0024145173,0.002577725,0.000017229891,0.00008216805,0.0005888157],"genre_scores_gemma":[0.00001693242,0.9960667,0.00008228422,0.00009056961,0.000061297746,0.00069660606,0.0008582503,0.00008983134,0.002037526],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9918494,0.0044559627,0.0019607996,0.0008093019,0.000055082124,0.0008694458],"domain_scores_gemma":[0.9968281,0.0007316576,0.0010903791,0.0012105465,0.000107240805,0.00003211878],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0016583266,0.001015609,0.0046694926,0.0010876235,0.00021787977,0.000044309203,0.00083089044,0.005366039,0.0015281425],"category_scores_gemma":[0.0009846094,0.0007628711,0.0007074236,0.0008446269,0.00048025744,0.00026869398,0.00047462908,0.005834134,0.0053753657],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000029449839,0.00006590277,0.000002027703,0.004345819,0.00040405753,0.000005992362,0.00010140957,6.19235e-9,0.00016821588,0.00038539362,0.0026818279,0.9918099],"study_design_scores_gemma":[0.0005334478,0.00012072039,0.000040020892,0.009893093,0.0003480641,0.00045232003,0.000037299702,3.9898364e-8,0.00007353237,0.00003538047,0.9877877,0.000678364],"about_ca_topic_score_codex":0.00009495271,"about_ca_topic_score_gemma":0.000017194761,"teacher_disagreement_score":0.99113154,"about_ca_system_score_codex":0.00027681113,"about_ca_system_score_gemma":0.00024633165,"threshold_uncertainty_score":0.9994822},"labels":[],"label_agreement":null},{"id":"W2023772140","doi":"10.1016/s0264-410x(00)00496-5","title":"The potential of oligodeoxynucleotides as mucosal and parenteral adjuvants","year":2001,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"Medical Research Council Canada","keywords":"CpG Oligodeoxynucleotide; Adjuvant; Toxoid; CpG site; Immune system; Immunology; Nasal administration; Medicine; Antigen; Tetanus; Cholera toxin; Immunization; Antibody; Vaccination; Biology; Internal medicine","score_opus":0.004889206620223244,"score_gpt":0.22279279887353984,"score_spread":0.2179035922533166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2023772140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943625,0.0040422017,0.00002648452,0.0007316839,0.00032688203,0.000077984994,0.0000016783081,0.00001763852,0.00041299866],"genre_scores_gemma":[0.99652994,0.0014750534,0.0000073469214,0.000042953656,0.000026918973,0.0000031632026,0.000016910353,0.000005404414,0.0018923146],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99947864,0.000082023755,0.00018755597,0.00008446312,0.00001740677,0.00014989005],"domain_scores_gemma":[0.999688,0.0000608613,0.00007035937,0.00013607083,0.000037178554,0.0000075069343],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013459967,0.000069841735,0.00011257754,0.000037781465,0.00014067125,0.00000888427,0.000088620865,0.000059664184,0.00021852549],"category_scores_gemma":[0.000053889526,0.00004505401,0.000033844037,0.000048080015,0.000024132129,0.00006555753,0.000049715494,0.000076242286,0.00013950898],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016530823,0.000044268727,0.008941546,0.0000075706052,0.00012941375,0.000008068847,0.00019075436,0.000003553694,0.93527913,0.0011302654,0.002843573,0.049768772],"study_design_scores_gemma":[0.0041193436,0.0005469753,0.48843196,0.00004772217,0.00007917184,0.00064737635,0.0005257819,0.00006185117,0.38168445,0.0009889036,0.122664034,0.00020243782],"about_ca_topic_score_codex":0.0000641599,"about_ca_topic_score_gemma":0.000014816566,"teacher_disagreement_score":0.5535947,"about_ca_system_score_codex":0.0000043975733,"about_ca_system_score_gemma":0.000013291058,"threshold_uncertainty_score":0.23927008},"labels":[],"label_agreement":null},{"id":"W2024324060","doi":"10.1007/s00335-005-0132-x","title":"Tlr5 is not primarily associated with susceptibility to Salmonella Typhimurium infection in MOLF/Ei mice","year":2006,"lang":"en","type":"article","venue":"Mammalian Genome","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Armand Frappier Museum; Montreal General Hospital; Institut National de la Recherche Scientifique; McGill University; McGill Genome Centre","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"TLR5; Flagellin; Biology; Congenic; Salmonella; Allele; Locus (genetics); Genetics; Gene; Phenotype; Microbiology; Molecular biology; Toll-like receptor; Receptor; Innate immune system; Bacteria","score_opus":0.008242933471366667,"score_gpt":0.21002862786402263,"score_spread":0.20178569439265595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024324060","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99605757,0.00015771584,0.00010587367,0.00062402233,0.0002146772,0.00047379785,0.00002458388,0.00008692179,0.0022548116],"genre_scores_gemma":[0.9870365,0.000008398482,0.00004110552,0.0003671058,0.0000427527,0.000031801057,0.00029148298,0.00002510956,0.012155691],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99838716,0.00028851698,0.00041450528,0.0003882666,0.00005891854,0.0004626407],"domain_scores_gemma":[0.9993299,0.000070647555,0.00014037201,0.00032444656,0.000112168505,0.000022433971],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005329475,0.00021818334,0.00029396766,0.00025451632,0.00012917207,0.000028759641,0.00014086648,0.0003040631,0.000503851],"category_scores_gemma":[0.00006668511,0.00020589797,0.00006866883,0.00043046294,0.00007940091,0.00012650108,0.00006029151,0.00026420222,0.0012143267],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010324008,0.00021352565,0.07210653,0.00002069624,0.00006380317,0.000013412337,0.00063245493,0.00019433806,0.9240001,0.00008666525,0.0010256772,0.0006103853],"study_design_scores_gemma":[0.0010973631,0.00029455585,0.85620826,0.000022617469,0.000023961302,0.000014317039,0.000029712126,0.000005246906,0.1221551,0.00006100729,0.019819349,0.000268521],"about_ca_topic_score_codex":0.002569227,"about_ca_topic_score_gemma":0.002021929,"teacher_disagreement_score":0.801845,"about_ca_system_score_codex":0.0003060732,"about_ca_system_score_gemma":0.000078959776,"threshold_uncertainty_score":0.99956334},"labels":[],"label_agreement":null},{"id":"W2024495468","doi":"10.1002/ddr.10433","title":"Pharmacogenomics in sepsis and septic shock","year":2005,"lang":"en","type":"article","venue":"Drug Development Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Pharmacogenomics; Candidate gene; Single-nucleotide polymorphism; Haplotype; Sepsis; Genomics; Bioinformatics; Medicine; Biology; Allele; Genetics; Gene; Genome; Immunology; Genotype","score_opus":0.03731906316939672,"score_gpt":0.33795357484999106,"score_spread":0.30063451168059435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024495468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928498,0.0023312701,0.0000073432475,0.001396458,0.000062949286,0.00022167906,5.3015765e-7,0.000020830119,0.0031091128],"genre_scores_gemma":[0.9843519,0.00042825434,0.00035883655,0.00008282353,0.000019188776,0.000047079873,0.000037120237,0.00001016026,0.014664648],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987299,0.00030998734,0.000252758,0.00020574017,0.00006643211,0.00043518888],"domain_scores_gemma":[0.99959725,0.00017919144,0.000022560684,0.00011508822,0.000065439,0.000020489113],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016346944,0.00009221207,0.00012402465,0.0003874223,0.0001995393,0.000023260876,0.00014687156,0.00008593793,0.00059613754],"category_scores_gemma":[0.000059537066,0.00008624593,0.000015837784,0.0002188821,0.00010217551,0.00012036212,0.00015779772,0.0003740618,0.0018892669],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034349042,0.00014584369,0.007784431,0.000041821568,0.00009704037,0.000012002203,0.0111571215,0.000018476701,0.691212,0.00036037902,0.012639333,0.27618805],"study_design_scores_gemma":[0.00082986534,0.000010730317,0.014828832,0.000023555498,0.0000018421931,0.000012392159,0.00041682765,0.000032657837,0.49586597,0.000026929423,0.4878377,0.0001126965],"about_ca_topic_score_codex":0.000028546254,"about_ca_topic_score_gemma":0.00007050052,"teacher_disagreement_score":0.47519836,"about_ca_system_score_codex":0.00017123799,"about_ca_system_score_gemma":0.00020255728,"threshold_uncertainty_score":0.9988879},"labels":[],"label_agreement":null},{"id":"W2024497753","doi":"10.1074/jbc.m308135200","title":"Interferon Regulatory Factor-3-mediated Activation of the Interferon-sensitive Response Element by Toll-like receptor (TLR) 4 but Not TLR3 Requires the p65 Subunit of NF-κ","year":2003,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Science Foundation Ireland","keywords":"TLR3; Toll-like receptor; Interferon regulatory factors; Interferon; Protein subunit; Immunology; Biology; Cancer research; Innate immune system; Immune system; Gene; Genetics","score_opus":0.01728796442998575,"score_gpt":0.23078339014282817,"score_spread":0.2134954257128424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024497753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982382,0.0004785649,0.00005615505,0.0005392373,0.00031476974,0.00014569264,0.00003906502,0.0000080299815,0.0001802791],"genre_scores_gemma":[0.99885947,0.00014731819,0.000012765878,0.00011774587,0.000030414627,0.0000036243423,0.00003092331,0.000008561656,0.0007891607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99739784,0.001174008,0.00094209576,0.00015594637,0.00010855161,0.00022157218],"domain_scores_gemma":[0.99714035,0.0009902831,0.001220115,0.00030687178,0.0003182625,0.000024095236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012889665,0.00019515942,0.00040550597,0.000042611664,0.00010075669,0.000008201276,0.00037751818,0.00040257766,0.00047489488],"category_scores_gemma":[0.0015527601,0.000101485464,0.0002424173,0.000106209,0.00049667835,0.000090737645,0.00009052819,0.0005740948,0.000008996791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009648985,0.000118265205,0.00026202263,0.000019516321,0.00019917151,8.303353e-7,0.00028369998,0.0000028549364,0.98734564,0.000024901972,0.0016885552,0.00040557468],"study_design_scores_gemma":[0.00086549047,0.0006957243,0.004205559,0.00014731691,0.00002590174,0.000057114634,0.0012863395,8.1249175e-7,0.98180664,0.000017998083,0.01078217,0.00010891543],"about_ca_topic_score_codex":0.0000067354777,"about_ca_topic_score_gemma":3.0914114e-7,"teacher_disagreement_score":0.009093614,"about_ca_system_score_codex":0.00013522865,"about_ca_system_score_gemma":0.00013624327,"threshold_uncertainty_score":0.5199766},"labels":[],"label_agreement":null},{"id":"W2024821528","doi":"10.1016/s1873-9946(14)50001-3","title":"O-01: IL-10 receptor dependent signals regulate the generation and function of anti-inflammatory macrophages in mice and humans","year":2014,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; McMaster Children's Hospital","funders":"","keywords":"Medical school; Sick child; Medicine; Family medicine; Demography; Gerontology; Pediatrics; Sociology","score_opus":0.008255742239521356,"score_gpt":0.21629433996766895,"score_spread":0.2080385977281476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024821528","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99436563,0.0048661134,0.00012147361,0.00027309606,0.00019342876,0.00009091731,0.0000035681865,0.000002505301,0.0000832724],"genre_scores_gemma":[0.9976123,0.0017445215,0.000013916864,0.000049362934,0.00007540424,0.0000022059578,0.000004298466,0.0000053264093,0.00049269013],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99905944,0.00030473122,0.00040155248,0.00008405088,0.000041303596,0.00010891243],"domain_scores_gemma":[0.99940884,0.00010001093,0.00031314627,0.00006515863,0.000098869816,0.000013949169],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079785235,0.00008176883,0.00020628866,0.00010084151,0.00012067334,0.000029337336,0.000046477377,0.00010789885,0.00010158254],"category_scores_gemma":[0.000049759496,0.000058264784,0.000030842995,0.00003619374,0.00012901063,0.00016593891,0.000024690524,0.00013313728,0.0000030132499],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013612724,0.000022165104,0.0009213583,0.000037498914,0.000074431984,0.0000037372488,0.00063670764,0.000011116564,0.9698915,0.0012015372,0.00072010857,0.025118593],"study_design_scores_gemma":[0.0014188704,0.00044752803,0.6522787,0.00008578971,0.000056779176,0.00016166863,0.00032586785,0.00003893337,0.3280043,0.00036845732,0.016719889,0.00009322414],"about_ca_topic_score_codex":0.000023109338,"about_ca_topic_score_gemma":0.000029541368,"teacher_disagreement_score":0.65135735,"about_ca_system_score_codex":0.000011363113,"about_ca_system_score_gemma":0.00002593713,"threshold_uncertainty_score":0.2375969},"labels":[],"label_agreement":null},{"id":"W2024884374","doi":"10.1097/00003246-200108000-00036","title":"Soluble L-selectin Levels in Experimental Human Endotoxemia","year":2001,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Royal Victoria Hospital","funders":"","keywords":"Medicine; Intensive care medicine; Pharmacology","score_opus":0.03322561864979911,"score_gpt":0.3434039344899458,"score_spread":0.31017831584014666,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024884374","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97271526,0.010891917,0.00006941552,0.0013479849,0.00071094,0.00015869972,6.7904216e-7,0.00006027083,0.01404483],"genre_scores_gemma":[0.9979988,0.000013474604,0.000012008339,0.0002964482,0.00010536039,0.00003120749,0.00006817702,0.000011781333,0.0014627397],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989209,0.00016800004,0.0003018459,0.0002029364,0.00004731766,0.00035895314],"domain_scores_gemma":[0.9995151,0.0001900027,0.000020598814,0.0001717155,0.00007685526,0.000025725627],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020107557,0.00012861642,0.00024239186,0.0001346374,0.00014590906,0.000005556377,0.0001176832,0.0001677361,0.003860051],"category_scores_gemma":[0.00039365608,0.000109264336,0.00003598045,0.00014221418,0.00033871565,0.000084212974,0.000038654383,0.00028782262,0.00025883713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000995531,0.00004933961,0.0017541664,0.00001881454,0.0000073298925,0.000045211604,0.0018939009,1.5273447e-7,0.98918474,0.0038439415,0.0016297542,0.0014731139],"study_design_scores_gemma":[0.0023685533,0.00066017034,0.005174463,0.00010136281,0.00001631132,0.00012883903,0.007243717,0.0000011582265,0.94662577,0.00021391723,0.03731206,0.00015366079],"about_ca_topic_score_codex":0.00014412808,"about_ca_topic_score_gemma":0.000024419553,"teacher_disagreement_score":0.04255894,"about_ca_system_score_codex":0.00009607391,"about_ca_system_score_gemma":0.00003214409,"threshold_uncertainty_score":0.9970506},"labels":[],"label_agreement":null},{"id":"W2024944874","doi":"10.1038/nm.2556","title":"Nuclear factor-κB1 controls the functional maturation of dendritic cells and prevents the activation of autoreactive T cells","year":2011,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research","keywords":"Cytotoxic T cell; Autoimmunity; Immunology; Biology; Granzyme B; Cell biology; Dendritic cell; Immune system; Tumor necrosis factor alpha; CD8","score_opus":0.010882259967886911,"score_gpt":0.2167722087065112,"score_spread":0.2058899487386243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2024944874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963194,0.001141666,0.0001263507,0.0006319397,0.00066654605,0.00034432646,0.0000083285895,0.000010644101,0.00075079064],"genre_scores_gemma":[0.9992885,0.00007198441,0.000010967859,0.00018722839,0.00004854512,0.0000055647924,0.000027949074,0.000006456319,0.00035278613],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992854,0.00021657877,0.00023849637,0.00009777357,0.000069435504,0.00009233998],"domain_scores_gemma":[0.9990965,0.0003637239,0.00024860934,0.0001599926,0.00012462957,0.0000065557206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027455328,0.0000911107,0.00017291632,0.000057588808,0.00009449202,0.0000019068607,0.000098670374,0.00024385467,0.00039786994],"category_scores_gemma":[0.00013062566,0.000045152512,0.000034946166,0.00007875615,0.00028601408,0.00009705253,0.000020813386,0.00039031493,0.000009193638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007938897,0.000031036092,0.00005781152,0.000016902672,0.00010900055,1.6552676e-7,0.0026428571,5.391391e-7,0.99168646,0.0019847332,0.0010128422,0.0016637434],"study_design_scores_gemma":[0.0009442253,0.00021238203,0.07778353,0.00007089428,0.000068070556,0.000008573543,0.000749169,0.000011486461,0.9154053,0.0002281063,0.004475088,0.00004319081],"about_ca_topic_score_codex":0.000047026315,"about_ca_topic_score_gemma":0.0000016597195,"teacher_disagreement_score":0.07772572,"about_ca_system_score_codex":0.000015580577,"about_ca_system_score_gemma":0.000023913057,"threshold_uncertainty_score":0.43563968},"labels":[],"label_agreement":null},{"id":"W2025308562","doi":"10.1046/j.1365-2982.2003.00457.x","title":"The expression and role of Fas ligand in intestinal inflammation","year":2004,"lang":"en","type":"article","venue":"Neurogastroenterology & Motility","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Alberta Heritage Foundation for Medical Research; Canadian Association of Gastroenterology","keywords":"Fas ligand; Ileitis; Inflammation; Colitis; Immunology; Enteric nervous system; Immune system; Biology; Pathogenesis; Medicine; Internal medicine; Endocrinology; Apoptosis; Crohn's disease","score_opus":0.004752778699197453,"score_gpt":0.20639467236672807,"score_spread":0.2016418936675306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025308562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99855196,0.00036693364,0.00008292538,0.0006110197,0.00013632797,0.00017226032,0.0000016448394,0.000019232933,0.00005770394],"genre_scores_gemma":[0.99981886,0.000060308896,0.000034580225,0.00003313628,0.000009102563,0.000013599488,0.00001071406,0.0000049306254,0.000014790178],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99889064,0.00030879435,0.00035582136,0.00018324546,0.000027860206,0.00023366424],"domain_scores_gemma":[0.9994589,0.00012842884,0.00014499799,0.00021176014,0.00004454633,0.000011361214],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035174898,0.00010525018,0.00016400343,0.000071355775,0.000112198824,0.000007424186,0.00013176633,0.00010309137,0.0000074106547],"category_scores_gemma":[0.00021244278,0.00007921517,0.00003587739,0.000055136334,0.00032344088,0.000112257774,0.00009745352,0.00025522904,0.000012159995],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023110842,0.000041393974,0.1244908,0.000006021805,0.000008189603,0.0000016306093,0.0003413138,0.00002911265,0.87116337,0.00013008797,0.0000055003065,0.0035514503],"study_design_scores_gemma":[0.0010638532,0.0002703685,0.5202091,0.000019548972,0.0000052978503,0.000045851717,0.000110349596,0.0000064500123,0.47734526,0.0005599107,0.00035376515,0.000010289674],"about_ca_topic_score_codex":0.000049139322,"about_ca_topic_score_gemma":0.00009730036,"teacher_disagreement_score":0.39571828,"about_ca_system_score_codex":0.000020036508,"about_ca_system_score_gemma":0.000021187243,"threshold_uncertainty_score":0.32303008},"labels":[],"label_agreement":null},{"id":"W2025387586","doi":"10.1016/j.molimm.2008.09.020","title":"Multiple molecular regions confer intracellular localization of bovine Toll-like receptor 8","year":2008,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Ectodomain; Intracellular; Cell biology; Extracellular; Biology; Transfection; Cytoplasm; Receptor; Subcellular localization; Fusion protein; Recombinant DNA; Gene; Biochemistry","score_opus":0.008371476589974143,"score_gpt":0.2025546234769619,"score_spread":0.19418314688698776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025387586","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.89037025,0.01304803,0.09396266,0.00048590716,0.0007453432,0.00044064302,0.000011659275,0.00012409702,0.00081142236],"genre_scores_gemma":[0.9963759,0.00057340966,0.00034016964,0.00027786693,0.000011155458,0.00004734079,0.00064885337,0.000046244317,0.0016790559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99774134,0.0006496366,0.0006719178,0.00038656456,0.00007501314,0.0004755069],"domain_scores_gemma":[0.9985918,0.00010097928,0.00029767008,0.0007163226,0.00026963896,0.000023627035],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00021832723,0.00028950756,0.00049972325,0.00030292023,0.00022453284,0.0000063725042,0.00034623014,0.0005743328,0.0005578478],"category_scores_gemma":[0.00028508258,0.0002988135,0.00020997495,0.00029951046,0.0006791979,0.000116893905,0.00014122883,0.0003510475,0.0006424967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006390821,0.00017365199,0.0003154662,0.000016739777,0.0004080576,0.00008882197,0.00039015705,0.00014322414,0.9909838,0.004508217,0.0011985599,0.0011342445],"study_design_scores_gemma":[0.0018214151,0.0003919861,0.00032334143,0.000028245584,0.00005013865,0.00037029426,0.000107165426,0.00008265112,0.86517876,0.00012629687,0.13125922,0.00026046054],"about_ca_topic_score_codex":0.00011490462,"about_ca_topic_score_gemma":0.0000040073223,"teacher_disagreement_score":0.13006066,"about_ca_system_score_codex":0.00005756213,"about_ca_system_score_gemma":0.00014942401,"threshold_uncertainty_score":0.9999464},"labels":[],"label_agreement":null},{"id":"W2025477540","doi":"10.1182/blood-2006-10-053256","title":"TLR3 ligand stimulates fully functional memory CD8+ T cells in the absence of CD4+ T-cell help","year":2007,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research; Universidad Pública de Navarra; Institut National Du Cancer; Universidad de Navarra","keywords":"Cytotoxic T cell; Priming (agriculture); CD8; T cell; Biology; Cell biology; TLR7; Immunology; Toll-like receptor; Immune system; Innate immune system; Biochemistry; In vitro","score_opus":0.00864944446287636,"score_gpt":0.20812218058648582,"score_spread":0.19947273612360947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025477540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937605,0.0023059796,0.00009351642,0.00006772963,0.00026446578,0.00015159154,0.0000037119075,0.000014105026,0.0033383858],"genre_scores_gemma":[0.9980991,0.000058302157,0.000028738239,0.000085991385,0.000033936863,0.000003911716,0.000026371185,0.0000058736173,0.0016578112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992277,0.00010747795,0.0002883477,0.00012445677,0.00004421816,0.0002078161],"domain_scores_gemma":[0.9993045,0.00034779473,0.00009976519,0.00019314095,0.000048333655,0.000006482668],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007423783,0.000094188246,0.00013168273,0.00010061979,0.00007099417,0.00000600979,0.00015090221,0.00014570907,0.00015521594],"category_scores_gemma":[0.00003731106,0.00006908564,0.000055768895,0.0001327819,0.000095064046,0.000062573024,0.000027293865,0.00017805434,0.0002710016],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021736462,0.00029205676,0.00107297,0.000014630699,0.00002919603,0.0000081992985,0.00070737273,0.00003156241,0.9963238,0.000093736715,0.0005097633,0.000699343],"study_design_scores_gemma":[0.0016508194,0.00012960983,0.029011542,0.000018268393,0.000021514692,0.00003200227,0.0005420761,0.0000020044693,0.9658735,0.000064106775,0.0025755472,0.000079031815],"about_ca_topic_score_codex":0.00004469583,"about_ca_topic_score_gemma":0.0000193268,"teacher_disagreement_score":0.030450327,"about_ca_system_score_codex":0.0000068760046,"about_ca_system_score_gemma":0.00004523108,"threshold_uncertainty_score":0.34832677},"labels":[],"label_agreement":null},{"id":"W2025713348","doi":"10.1186/cc9685","title":"Safety, pharmacokinetics, and pharmacodynamics of 4-hour intravenous infusion of eritoran tetrasodium in healthy Japanese and Caucasian males","year":2011,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Pharmacodynamics; Pharmacokinetics; Pharmacology; Internal medicine; Anesthesia","score_opus":0.01684491864902524,"score_gpt":0.28183240417615657,"score_spread":0.2649874855271313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025713348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919121,0.006783056,0.000014886816,0.00018618412,0.00024604643,0.00015457462,0.000044937195,0.000011027746,0.0006471572],"genre_scores_gemma":[0.9989961,0.00079302245,0.000085845546,0.000046246278,0.000014467986,0.000003949989,0.00003972692,0.00000977016,0.00001090337],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910444,0.00016791584,0.00035272335,0.00014759466,0.000029445839,0.0001978629],"domain_scores_gemma":[0.9995638,0.00014080938,0.000048025315,0.00010055547,0.000117391326,0.00002941011],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001407227,0.000108884116,0.0002498038,0.00012302637,0.0000488902,0.000002981186,0.00007120201,0.00015250537,0.00012750035],"category_scores_gemma":[0.000115638606,0.000104884086,0.000026234075,0.000071553535,0.000430596,0.00006553631,0.00006429859,0.00018870889,0.00000303071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005319209,0.00031316085,0.018757584,0.0018974579,0.00005245624,0.000036599493,0.03592885,9.2676754e-7,0.89166456,0.0025585485,0.000035831683,0.0434348],"study_design_scores_gemma":[0.007497409,0.00331323,0.3209617,0.0004379793,0.00023347455,0.00031669886,0.03183866,0.000089780675,0.6319506,0.00039432305,0.0023665116,0.0005996178],"about_ca_topic_score_codex":0.00032378835,"about_ca_topic_score_gemma":0.0000703996,"teacher_disagreement_score":0.30220413,"about_ca_system_score_codex":0.000019172843,"about_ca_system_score_gemma":0.00003892769,"threshold_uncertainty_score":0.42770487},"labels":[],"label_agreement":null},{"id":"W2025773950","doi":"10.1159/000128108","title":"Intravascular Hemolysis and Ultrastructural Changes of Erythrocytes in Lethal Canine Endotoxin Shock","year":2008,"lang":"en","type":"article","venue":"European Surgical Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Disseminated intravascular coagulation; Fibrin; Hemolysis; Shock (circulatory); Ultrastructure; Platelet; Fibrinolysis; Pathology; Chemistry; Medicine; Immunology; Internal medicine","score_opus":0.04647946549910284,"score_gpt":0.2985115088555342,"score_spread":0.25203204335643137,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025773950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991801,0.0039581326,0.0000030361418,0.00026921966,0.00004432659,0.00014727974,0.0000034084057,0.000016163223,0.0037574193],"genre_scores_gemma":[0.99688166,0.0016251213,0.000023830149,0.000006767988,0.00003664455,0.0000047762037,0.000027366834,0.000014107282,0.0013797099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970761,0.0019007665,0.0002662992,0.00023628538,0.00011917041,0.00040139715],"domain_scores_gemma":[0.9990969,0.00052785804,0.00004039273,0.00019969963,0.00010545453,0.00002970133],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015488947,0.00010958871,0.00025843622,0.0002973231,0.00013839529,0.000008069156,0.00017676583,0.00007847249,0.00050067634],"category_scores_gemma":[0.00037210286,0.00008879103,0.000048740407,0.00031238297,0.00062233093,0.00006144438,0.00015171958,0.00047963441,0.00012839638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007780771,0.00006452839,0.004751414,0.00003104274,0.00007369459,0.00073995074,0.0014075857,0.0000058746755,0.96925384,0.0002698013,0.00033359384,0.02229057],"study_design_scores_gemma":[0.002423334,0.00040596243,0.13005829,0.000057214416,0.000006629975,0.0013030642,0.0003730814,0.0000124112785,0.83897865,0.000018413088,0.026194058,0.00016888416],"about_ca_topic_score_codex":0.00023971089,"about_ca_topic_score_gemma":0.00003086876,"teacher_disagreement_score":0.1302752,"about_ca_system_score_codex":0.000028101867,"about_ca_system_score_gemma":0.000041558116,"threshold_uncertainty_score":0.5482055},"labels":[],"label_agreement":null},{"id":"W2025815720","doi":"10.1111/jcmm.12294","title":"A novel <scp>TLR</scp>2‐triggered signalling crosstalk synergistically intensifies <scp>TNF</scp>‐mediated <scp>IL</scp>‐6 induction","year":2014,"lang":"en","type":"article","venue":"Journal of Cellular and Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"University of Toronto; Academia Sinica; Yen Tjing Ling Medical Foundation; National Science Council","keywords":"Crosstalk; Tumor necrosis factor alpha; Receptor; Inflammation; Cell biology; Cytokine; Signal transducing adaptor protein; Signal transduction; Toll-like receptor; Immunology; Biology; Innate immune system; Immune system","score_opus":0.01050918015107649,"score_gpt":0.2215704065296481,"score_spread":0.2110612263785716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2025815720","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8751458,0.013577139,0.10774632,0.00042161864,0.0014968044,0.00027283354,0.000007688886,0.00005639718,0.0012753806],"genre_scores_gemma":[0.9948435,0.0012121149,0.00040872715,0.0007014895,0.0004945437,0.000008382651,0.00018031854,0.00006855063,0.002082415],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964952,0.00049349794,0.001477669,0.00043056373,0.0003578971,0.0007451718],"domain_scores_gemma":[0.9954816,0.0018376432,0.0010963206,0.0003711822,0.0010076785,0.00020555039],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022998333,0.0005149794,0.0010995903,0.00069555826,0.0003288938,0.000073989955,0.00037353084,0.00069694687,0.000026558155],"category_scores_gemma":[0.01145826,0.00040553755,0.00028972552,0.00041037842,0.00068858307,0.00028548302,0.00011735249,0.0012011068,0.00006672851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000062091436,0.00014682597,0.00005626662,0.0000966351,0.00055596785,0.00017211656,0.0016017072,0.000069182635,0.991224,0.00078381517,0.0036581273,0.0015732736],"study_design_scores_gemma":[0.0051575154,0.0017473293,0.0012186412,0.00053861615,0.0005942961,0.0014954694,0.0028349524,0.0003052623,0.83736336,0.00053291075,0.14812316,0.00008850032],"about_ca_topic_score_codex":0.000044923665,"about_ca_topic_score_gemma":0.0000028604252,"teacher_disagreement_score":0.15386064,"about_ca_system_score_codex":0.000071550385,"about_ca_system_score_gemma":0.00019483111,"threshold_uncertainty_score":0.99983966},"labels":[],"label_agreement":null},{"id":"W202606169","doi":"10.4049/jimmunol.190.supp.138.15","title":"Toll-like receptor 10: its expression and role in chemotaxis in human neutrophils (P1234)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cell biology; Biology; Chemotaxis; TLR4; Gene silencing; Receptor; Signal transduction; Biochemistry; Gene","score_opus":0.006986004037633596,"score_gpt":0.2178563051656042,"score_spread":0.2108703011279706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W202606169","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831668,0.014837717,0.000003938357,0.0011322643,0.00030126495,0.0001917894,6.1703037e-7,0.0000072255066,0.00035834633],"genre_scores_gemma":[0.9971751,0.0013581023,0.00001884819,0.00007229415,0.000027269602,0.000008484447,0.0000048809734,0.000011188302,0.0013238608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99815446,0.00077323074,0.00063959643,0.000100807665,0.000033623266,0.00029830058],"domain_scores_gemma":[0.9991173,0.0002053234,0.00036044713,0.00020485588,0.000100327685,0.000011704182],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007349271,0.00014384252,0.0003501588,0.00030943906,0.000107607935,0.000012077699,0.00031682063,0.0002684558,0.0014258865],"category_scores_gemma":[0.00011158787,0.00009633865,0.000051261704,0.0001271805,0.00016833465,0.0002985031,0.000118175005,0.0006146141,0.0003074462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006683778,0.0000670213,0.00027411312,0.0000049479454,0.000042749605,0.000003371402,0.0012910821,0.0000077366985,0.99286425,0.000056186043,0.00085982034,0.0038603619],"study_design_scores_gemma":[0.003445928,0.00075917045,0.06116737,0.00015700726,0.000017102253,0.0005586688,0.0017275653,0.00000543498,0.9171527,0.0004903854,0.014352475,0.00016621134],"about_ca_topic_score_codex":0.00012243903,"about_ca_topic_score_gemma":0.000012882186,"teacher_disagreement_score":0.07571155,"about_ca_system_score_codex":0.00005914829,"about_ca_system_score_gemma":0.00004133877,"threshold_uncertainty_score":0.9994869},"labels":[],"label_agreement":null},{"id":"W2027123878","doi":"10.1016/j.jri.2009.09.008","title":"Expression and function of Toll-like receptors in human endometrial epithelial cell lines","year":2009,"lang":"en","type":"article","venue":"Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"TLR5; TLR2; Innate immune system; Flagellin; Biology; Toll-like receptor; Receptor; TLR3; Cell culture; Cell biology; Immune system; TLR9; TLR7; Immunology; Gene expression; Gene; Genetics","score_opus":0.009949219360345684,"score_gpt":0.24330093037059702,"score_spread":0.23335171101025134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027123878","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9848458,0.011681697,0.00009823735,0.00031382224,0.0027317365,0.00015634458,0.000001110197,0.000008696926,0.00016252039],"genre_scores_gemma":[0.9981825,0.0007974306,0.000121914985,0.000017672528,0.00020534682,0.0000018940639,0.000008321276,0.000008061377,0.0006569065],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980668,0.0005815359,0.0008573544,0.00023545104,0.000052779007,0.00020609588],"domain_scores_gemma":[0.9984214,0.00015522787,0.0008834009,0.00025469039,0.00027474694,0.000010580719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00107983,0.00015149926,0.0005145029,0.000766323,0.00008436417,0.000006129703,0.00015291633,0.000275847,0.00009587594],"category_scores_gemma":[0.0005390966,0.00012377091,0.00011247332,0.00024682467,0.00020620007,0.00028664756,0.000043214703,0.00042417843,0.000007468041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005952385,0.00021860133,0.0007200641,0.000007461585,0.00007737546,0.00000536989,0.0006099873,0.0000109016255,0.9727093,0.00010489924,0.00032075183,0.019262902],"study_design_scores_gemma":[0.0040122992,0.0027567195,0.028714586,0.00006189924,0.00003971797,0.00018994565,0.00046480584,1.6564456e-7,0.9516221,0.0007083558,0.011322434,0.000106952415],"about_ca_topic_score_codex":0.000015398857,"about_ca_topic_score_gemma":0.000001101518,"teacher_disagreement_score":0.027994523,"about_ca_system_score_codex":0.000048974893,"about_ca_system_score_gemma":0.00006463613,"threshold_uncertainty_score":0.50472313},"labels":[],"label_agreement":null},{"id":"W2027216673","doi":"10.1016/j.biomaterials.2005.04.063","title":"Endotoxin: The uninvited guest","year":2005,"lang":"en","type":"article","venue":"Biomaterials","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":412,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McMaster University","funders":"","keywords":"Biomaterial; Biocompatibility; Materials science; Biocompatible material; Materials testing; Biomedical engineering; Biological safety; Biological materials; Biochemical engineering; Nanotechnology; Medicine; Engineering; Composite material","score_opus":0.010597326170795555,"score_gpt":0.22674778680528768,"score_spread":0.21615046063449211,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027216673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936538,0.0009031408,0.000010668798,0.0024027776,0.0014866481,0.00018384057,0.000009901751,0.000099938836,0.0012493005],"genre_scores_gemma":[0.99637145,0.00004634405,0.00002476307,0.00034294938,0.00026059916,0.000026383586,0.00010056428,0.000008559089,0.0028183772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999197,0.00026751278,0.00022786604,0.00010282295,0.00001768575,0.00018708648],"domain_scores_gemma":[0.9995787,0.0000655193,0.000080813006,0.00024387012,0.000025070603,0.000006008724],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00035067362,0.000091132926,0.00011968051,0.000045770783,0.00016372827,0.000029111881,0.000168642,0.00011638006,0.0013930855],"category_scores_gemma":[0.00005577478,0.000055876026,0.00003978128,0.00006223461,0.0001006787,0.00008906714,0.000044117292,0.000011598657,0.0054772156],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000094208604,0.00001644537,0.000019103667,0.0000023949892,0.000034638313,7.083843e-7,0.00015376287,2.7535003e-7,0.98300153,0.0005203492,0.014252329,0.0019042433],"study_design_scores_gemma":[0.00022732254,0.000017812745,0.0009606685,0.000004316956,0.0000066220805,0.000027511442,0.000019898736,3.3739764e-7,0.5768787,0.000009570466,0.42180228,0.000044915814],"about_ca_topic_score_codex":0.000028201446,"about_ca_topic_score_gemma":0.0000036554004,"teacher_disagreement_score":0.40754995,"about_ca_system_score_codex":0.000016506956,"about_ca_system_score_gemma":0.00001701752,"threshold_uncertainty_score":0.99951977},"labels":[],"label_agreement":null},{"id":"W2027224467","doi":"10.1016/s0022-1759(99)00188-x","title":"Quantitation of porcine cytokine and beta 2-microglobulin mRNA expression by reverse transcription polymerase chain reaction","year":2000,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Molecular biology; Housekeeping gene; Beta-2 microglobulin; Messenger RNA; Biology; Cytokine; Reverse transcription polymerase chain reaction; BETA (programming language); Real-time polymerase chain reaction; Gene expression; Polymerase chain reaction; Reverse transcriptase; Chemistry; Gene; Immunology; Biochemistry","score_opus":0.018704087382894658,"score_gpt":0.30684088021137723,"score_spread":0.2881367928284826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027224467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9694376,0.023446301,0.005650578,0.00082537683,0.0003301652,0.00013771506,0.000009118034,0.000017785094,0.00014536646],"genre_scores_gemma":[0.96770334,0.009526628,0.021516223,0.00009948758,0.000042959513,0.000004299688,0.000053485837,0.0000149698835,0.0010385758],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969962,0.0016287051,0.0009486538,0.00016112943,0.00006705096,0.00019825899],"domain_scores_gemma":[0.99865466,0.00033996947,0.0006673288,0.00016361185,0.00015079071,0.00002364643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018911199,0.00017433093,0.0005005585,0.00019372354,0.000112009766,0.000011072763,0.00014389593,0.00036643964,0.0006736103],"category_scores_gemma":[0.0002884227,0.00012787039,0.00016109577,0.00017428788,0.00018732325,0.0003609351,0.000017809401,0.00046410054,0.000015685913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029906407,0.00014174957,0.0000456434,0.000013137321,0.00008499394,0.0000036939339,0.00022243927,0.0000023674634,0.7892391,0.000064970016,0.00033203594,0.20685919],"study_design_scores_gemma":[0.0020477118,0.0012336755,0.006116744,0.00013538127,0.00008811445,0.00030821067,0.0002933599,0.0000057151474,0.9641085,0.00016136271,0.025375312,0.00012588328],"about_ca_topic_score_codex":0.000034728684,"about_ca_topic_score_gemma":2.615188e-7,"teacher_disagreement_score":0.20673332,"about_ca_system_score_codex":0.000040691888,"about_ca_system_score_gemma":0.000030030635,"threshold_uncertainty_score":0.73755604},"labels":[],"label_agreement":null},{"id":"W2027322809","doi":"10.1016/s0264-410x(99)00526-5","title":"CpG DNA induces stronger immune responses with less toxicity than other adjuvants","year":2000,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":262,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"Medical Research Council","keywords":"Adjuvant; Alum; Immune system; CpG site; Immunology; Antigen; Antibody; Biology; CpG Oligodeoxynucleotide; Lipid A; Chemistry; Lipopolysaccharide; DNA methylation; Biochemistry; Gene","score_opus":0.013242740947679627,"score_gpt":0.23366043966922154,"score_spread":0.2204176987215419,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027322809","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99465954,0.002088087,0.000025074718,0.00054943195,0.00016658922,0.00021349502,0.000016710756,0.000104974024,0.002176107],"genre_scores_gemma":[0.9690058,0.00010304051,0.000024974253,0.00012472445,0.00005306694,0.000031337724,0.000049627804,0.000026735028,0.030580655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987224,0.00030607558,0.0003051942,0.00025522377,0.000045053395,0.0003660954],"domain_scores_gemma":[0.9993171,0.000105532265,0.00010275795,0.00040501455,0.00005142877,0.000018173541],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028464792,0.00021423385,0.0003055097,0.00012772565,0.00019254733,0.000020272782,0.00021807391,0.00020636432,0.007515468],"category_scores_gemma":[0.000031410786,0.00015489454,0.00006275248,0.00017165874,0.000033873894,0.00021557767,0.000031300606,0.00023424537,0.0013396604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0071392716,0.00013684941,0.0029467081,0.000008776298,0.00020448098,0.000008982873,0.0004321146,0.000007685891,0.9532804,0.00012927888,0.0010635122,0.034641933],"study_design_scores_gemma":[0.0022802192,0.0004214837,0.1486248,0.00006389157,0.000037015845,0.000072783056,0.00023194557,0.0000015827503,0.7986264,0.000023168703,0.04938553,0.00023113856],"about_ca_topic_score_codex":0.00018435797,"about_ca_topic_score_gemma":0.000074658885,"teacher_disagreement_score":0.15465395,"about_ca_system_score_codex":0.00002755391,"about_ca_system_score_gemma":0.000061649094,"threshold_uncertainty_score":0.9994379},"labels":[],"label_agreement":null},{"id":"W2027404973","doi":"10.1016/j.vetimm.2005.05.008","title":"Toll-like receptor, MHC II, B7 and cytokine expression by porcine monocytes and monocyte-derived dendritic cells in response to microbial pathogen-associated molecular patterns","year":2005,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Lipoteichoic acid; Toll-like receptor; Immune system; Cytokine; Monocyte; Pathogen-associated molecular pattern; CpG Oligodeoxynucleotide; Immunology; TLR9; Interleukin 10; Major histocompatibility complex; Cell biology; Innate immune system; Pattern recognition receptor; Gene expression; Staphylococcus aureus; Gene; Biochemistry; Bacteria","score_opus":0.007561487626143621,"score_gpt":0.22439127990216834,"score_spread":0.21682979227602472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027404973","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97510433,0.021704612,0.00008994317,0.001448081,0.0007530038,0.00061963615,0.00015867798,0.00010514998,0.00001653683],"genre_scores_gemma":[0.9934088,0.004094396,0.00028752923,0.0006390702,0.000017818144,0.0001293076,0.0003210762,0.000059017588,0.0010429575],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9953022,0.0020211798,0.0008584854,0.00087860797,0.000049469665,0.0008900696],"domain_scores_gemma":[0.998747,0.00034450545,0.00025138556,0.0005172297,0.000076924436,0.00006295554],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008841893,0.0005780376,0.00086455286,0.0005704172,0.00049483334,0.00003729533,0.00029429016,0.00093648245,0.00014345555],"category_scores_gemma":[0.00019159699,0.0005978313,0.00007668004,0.00019873417,0.0005373029,0.00033222442,0.0008285493,0.0006879448,0.00007266679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011074894,0.0002652379,0.0009637855,0.00002204287,0.000111833564,0.00019892851,0.002168606,0.0000032043142,0.97916454,0.000010598364,0.0002811365,0.0057351994],"study_design_scores_gemma":[0.0059668347,0.005006357,0.032656405,0.00017529706,0.000052979078,0.0025499978,0.00061063934,0.000008838798,0.93254465,0.000015610787,0.019743938,0.00066844845],"about_ca_topic_score_codex":0.000079286074,"about_ca_topic_score_gemma":0.000014510558,"teacher_disagreement_score":0.046619877,"about_ca_system_score_codex":0.00012326117,"about_ca_system_score_gemma":0.00004991245,"threshold_uncertainty_score":0.9996473},"labels":[],"label_agreement":null},{"id":"W2027575368","doi":"10.1371/journal.ppat.0020004","title":"Modulation of Tumor Necrosis Factor by Microbial Pathogens","year":2006,"lang":"en","type":"review","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":204,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Robarts Clinical Trials","funders":"","keywords":"Tumor necrosis factor alpha; Proinflammatory cytokine; Biology; Immune system; Innate immune system; Signal transduction; Cytokine; Immunology; Cell biology; Receptor; Pattern recognition receptor; Inflammation; Genetics","score_opus":0.027710492409604572,"score_gpt":0.25787941739609305,"score_spread":0.23016892498648847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027575368","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011537085,0.98253435,0.000053642332,0.0000082656425,0.00054934976,0.001042502,0.0039240657,0.000101953534,0.0002488157],"genre_scores_gemma":[0.0016588528,0.986382,0.000087914574,0.000018746405,0.000099381745,0.00012638491,0.009004053,0.00012471776,0.0024979494],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99676573,0.0006956473,0.0013589704,0.0005610453,0.00008834561,0.0005302569],"domain_scores_gemma":[0.9978427,0.00023319131,0.0011006244,0.00064871437,0.0001476262,0.00002708577],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00019899804,0.0006299475,0.0019811094,0.00034899614,0.0001665461,0.00002334978,0.00038066373,0.000891474,0.00050442904],"category_scores_gemma":[0.00011626568,0.0005531405,0.0008681712,0.00028962243,0.00015284613,0.00010964207,0.00011464988,0.00047115897,0.000878004],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000040222927,0.00027081373,0.000015003007,0.0035699867,0.00048481938,0.000008211767,0.000086905005,9.2023475e-7,0.74140745,0.000023161287,0.005403347,0.24868916],"study_design_scores_gemma":[0.00043419126,0.00012065628,0.0000558394,0.0022637593,0.0010133141,0.000061309125,0.0000075724356,0.0000032727241,0.03763,0.000008132348,0.95781034,0.0005915899],"about_ca_topic_score_codex":0.000042719574,"about_ca_topic_score_gemma":0.0000039970023,"teacher_disagreement_score":0.952407,"about_ca_system_score_codex":0.0001391301,"about_ca_system_score_gemma":0.0002365133,"threshold_uncertainty_score":0.9998999},"labels":[],"label_agreement":null},{"id":"W2027625918","doi":"10.1016/j.bbagen.2013.02.002","title":"Bacterial membrane disrupting dodecapeptide SC4 improves survival of mice challenged with Pseudomonas aeruginosa","year":2013,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - General Subjects","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Networks of Centres of Excellence of Canada; National Institutes of Health","keywords":"Pseudomonas aeruginosa; In vivo; Medicine; Bacteremia; Antibiotics; Microbiology; Biology; Bacteria; Genetics","score_opus":0.010050579798253485,"score_gpt":0.2217462680471769,"score_spread":0.2116956882489234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027625918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636483,0.00022445126,0.0000111636,0.0010321513,0.00072267366,0.00069996057,0.00003358472,0.00013213661,0.00077906577],"genre_scores_gemma":[0.99760866,0.00024028738,0.00038474883,0.00010728771,0.00028725393,0.00008730856,0.00047123825,0.00006642273,0.0007467697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972891,0.0005577609,0.00065793196,0.0006224582,0.0001467713,0.0007259677],"domain_scores_gemma":[0.99836934,0.00022622636,0.0005289204,0.0005934619,0.00021576168,0.00006629544],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030322047,0.00052401144,0.0007185134,0.00018969394,0.00023696713,0.000075902055,0.00047490833,0.00035995152,0.00024555472],"category_scores_gemma":[0.000065153225,0.00041580218,0.00023515677,0.00025545474,0.00037797846,0.0004891656,0.0001904809,0.00038592395,0.000344974],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013039772,0.0002212461,0.000009060998,0.00007890455,0.00038232125,0.0000028452607,0.0008830011,0.0000026772295,0.9956656,0.00030676942,0.00024197444,0.0009016173],"study_design_scores_gemma":[0.0022123177,0.0006199885,0.011495304,0.00008165843,0.00010107696,0.000028577542,0.0002390914,0.000025852218,0.98431593,0.00003919454,0.0003101595,0.00053084677],"about_ca_topic_score_codex":0.000607954,"about_ca_topic_score_gemma":0.00005505496,"teacher_disagreement_score":0.011486243,"about_ca_system_score_codex":0.000047761743,"about_ca_system_score_gemma":0.00018238145,"threshold_uncertainty_score":0.99982935},"labels":[],"label_agreement":null},{"id":"W2027748180","doi":"10.1002/eji.201040827","title":"Essential role of Rip2 in the modulation of innate and adaptive immunity triggered by Nod1 and Nod2 ligands","year":2011,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Fondation Bettencourt Schueller; Canadian Association of Gastroenterology","keywords":"Muramyl dipeptide; NOD1; Biology; NOD2; Innate immune system; Acquired immune system; Nod; Cell biology; Immunology; Pattern recognition receptor; Inflammasome; Immune system; Microbiology; Inflammation; In vivo","score_opus":0.010479185299920347,"score_gpt":0.19469775779710144,"score_spread":0.1842185724971811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027748180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98605955,0.012832207,0.00008496008,0.000057384328,0.00012597855,0.00008373454,0.00000419409,0.0000029159135,0.0007490691],"genre_scores_gemma":[0.9988515,0.0010263238,0.000050615912,0.000013025584,0.000008986887,5.615288e-7,0.0000064029077,0.000009200946,0.000033420332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976553,0.0013954683,0.000694768,0.000082467086,0.00003386059,0.00013818889],"domain_scores_gemma":[0.99884737,0.00011657405,0.00072617736,0.00016002114,0.00014257146,0.0000073046294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014396979,0.00011014716,0.00032076408,0.0002210011,0.000060537648,0.000004354585,0.00023097257,0.00008299755,0.00003448022],"category_scores_gemma":[0.00012040225,0.00007955515,0.0000561581,0.00011305728,0.00039462544,0.00015856653,0.00007889924,0.00036594883,0.0000048524794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022284477,0.00011371916,0.0006027708,0.0000070080987,0.0002042183,0.000006835453,0.009766896,0.0000010244501,0.975061,0.00037465637,0.000028707858,0.011604707],"study_design_scores_gemma":[0.0030470735,0.0015060763,0.26515833,0.000086493834,0.000067621855,0.00040295217,0.0037497724,0.000009865273,0.72501326,0.00023342867,0.0006252426,0.00009987806],"about_ca_topic_score_codex":0.00006837843,"about_ca_topic_score_gemma":0.0000024780572,"teacher_disagreement_score":0.26455554,"about_ca_system_score_codex":0.0000075859134,"about_ca_system_score_gemma":0.000030404375,"threshold_uncertainty_score":0.3244165},"labels":[],"label_agreement":null},{"id":"W2027936811","doi":"10.1099/vir.0.81444-0","title":"Role of non-raft cholesterol in lymphocytic choriomeningitis virus infection via α-dystroglycan","year":2006,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal General Hospital","funders":"Canadian Institutes of Health Research","keywords":"Lymphocytic choriomeningitis; Biology; Virology; Raft; Virus; Immunology; Immune system","score_opus":0.003174149167652749,"score_gpt":0.21118989104478836,"score_spread":0.20801574187713562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2027936811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973043,0.0012102983,0.00045330648,0.000079990816,0.00055104203,0.00008880147,0.0000023149423,0.0000067473,0.0003031922],"genre_scores_gemma":[0.99917334,0.0001756073,0.00008185816,0.000052276377,0.00017205009,0.0000049100213,0.000015826216,0.000012544514,0.00031160857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984544,0.00027363063,0.00083158474,0.000118092896,0.00004787293,0.00027445034],"domain_scores_gemma":[0.99908525,0.000050728242,0.00061961025,0.00013026434,0.000099264704,0.000014912449],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040667196,0.00014149857,0.00042690465,0.0005327567,0.000049707673,0.000006900607,0.00013595397,0.0002964644,0.00012634645],"category_scores_gemma":[0.000025491085,0.0001285354,0.00013998312,0.00016969789,0.00011148047,0.00018615405,0.00003368691,0.00028148625,0.00003968047],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071942975,0.00009448557,0.013035037,0.0000070371166,0.00007077682,0.000011695519,0.00012324551,0.0013591738,0.97806185,0.000046349152,0.00019392186,0.0062770215],"study_design_scores_gemma":[0.00294605,0.0009446936,0.35326678,0.000022068556,0.00003945674,0.00089283707,0.000012168234,0.0001719135,0.635815,0.00029917812,0.0054873736,0.00010245529],"about_ca_topic_score_codex":0.002366731,"about_ca_topic_score_gemma":0.00033167808,"teacher_disagreement_score":0.3422468,"about_ca_system_score_codex":0.00018738037,"about_ca_system_score_gemma":0.00012253148,"threshold_uncertainty_score":0.5241521},"labels":[],"label_agreement":null},{"id":"W2028348061","doi":"10.1191/0960327103ht403oa","title":"Mechanisms involved in methylmercuric chloride (MeHgCl)-induced suppression of human neutrophil apoptosis","year":2003,"lang":"en","type":"article","venue":"Human & Experimental Toxicology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Institut National de la Recherche Scientifique","funders":"","keywords":"Apoptosis; Annexin; Chemistry; CD16; Cell biology; Molecular biology; Flow cytometry; Vimentin; Annexin A5; Biology; Biochemistry; Immunology; Antigen; CD8","score_opus":0.0317556111356583,"score_gpt":0.2999339920415153,"score_spread":0.268178380905857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028348061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952241,0.00067101937,0.000015319398,0.000045375837,0.00076367566,0.00046659485,0.000001444072,0.000056897046,0.002755529],"genre_scores_gemma":[0.998933,0.000015932257,0.00007300101,0.00010647056,0.00001570171,0.00015769464,0.00009099131,0.000034850007,0.0005723166],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973284,0.0008768195,0.00075617566,0.00043834365,0.00006716219,0.0005331182],"domain_scores_gemma":[0.999122,0.000091073816,0.0002902307,0.00042149177,0.000041776544,0.000033376342],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043225035,0.00030709023,0.00059651263,0.00043155105,0.00027874464,0.00001120478,0.00029705573,0.0005010383,0.0031801779],"category_scores_gemma":[0.000048624723,0.00030504377,0.00015655348,0.00022283556,0.000196656,0.00018870975,0.00012190807,0.00029647726,0.00022033129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026438414,0.0006283024,0.00011386217,0.000012854968,0.000062152474,0.0000051373486,0.0012661105,0.000002384094,0.9594624,0.037947427,0.00011561771,0.00011937684],"study_design_scores_gemma":[0.0028712125,0.0014427317,0.0012037604,0.000033948203,0.000021169513,0.000014718847,0.0017420427,8.1598375e-7,0.990356,0.0012292668,0.00080516364,0.0002791395],"about_ca_topic_score_codex":0.000118832635,"about_ca_topic_score_gemma":0.000027473801,"teacher_disagreement_score":0.03671816,"about_ca_system_score_codex":0.00017063713,"about_ca_system_score_gemma":0.000052258947,"threshold_uncertainty_score":0.99994016},"labels":[],"label_agreement":null},{"id":"W2028563834","doi":"10.1038/cdd.2009.3","title":"Getting away from it all in Capri: the 2008 EMBO workshop on NF-κB","year":2009,"lang":"en","type":"article","venue":"Cell Death and Differentiation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; National Institutes of Health; Consiglio Nazionale delle Ricerche; Institute of Genetics; Cancer Research UK","keywords":"Globe; Political science; Biology; Neuroscience","score_opus":0.01839575591473931,"score_gpt":0.2381702484643365,"score_spread":0.2197744925495972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028563834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935092,0.0021622847,0.00027820442,0.0012155471,0.00023886292,0.00017035387,0.000003020376,0.000024616267,0.0023979216],"genre_scores_gemma":[0.9969114,0.000490867,0.000014231993,0.00074444275,0.000040860225,0.0000075990356,0.00031592982,0.0000057642983,0.0014689195],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991685,0.00017258659,0.00022603826,0.00018829825,0.00003269259,0.00021186133],"domain_scores_gemma":[0.9995145,0.00018553004,0.00009455778,0.0001741268,0.000018591507,0.000012689749],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014023298,0.00012724068,0.00013847795,0.0000817053,0.00014346342,0.00003452573,0.000088462584,0.00017773442,0.0001539685],"category_scores_gemma":[0.000048007085,0.00009082922,0.000040463437,0.00005676307,0.000020144384,0.000087586835,0.000018592615,0.00021851553,0.00014085445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047108284,0.00021297076,0.0051775197,0.000009520687,0.000048128717,0.0000042152506,0.0035491644,0.00004127649,0.9300302,0.0010901068,0.0033008768,0.05606488],"study_design_scores_gemma":[0.002205623,0.0001432815,0.68729943,0.000094361,0.000059830258,0.0000039660754,0.00051013497,0.00044488648,0.2955225,0.0016513044,0.011778569,0.00028611024],"about_ca_topic_score_codex":0.000069145324,"about_ca_topic_score_gemma":0.000031377993,"teacher_disagreement_score":0.6821219,"about_ca_system_score_codex":0.000025431202,"about_ca_system_score_gemma":0.0000139588565,"threshold_uncertainty_score":0.3703908},"labels":[],"label_agreement":null},{"id":"W2028747797","doi":"10.1074/jbc.m110.205724","title":"Down-regulation of Cytokine-induced Interleukin-8 Requires Inhibition of p38 Mitogen-activated Protein Kinase (MAPK) via MAPK Phosphatase 1-dependent and -independent Mechanisms","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Children's Hospital; McGill University; McGill University Health Centre","funders":"","keywords":"MAPK/ERK pathway; p38 mitogen-activated protein kinases; Cytokine; Tumor necrosis factor alpha; Protein kinase A; Dexamethasone; Kinase; Biology; Chemistry; Cell biology; Cancer research; Endocrinology; Immunology","score_opus":0.023584863633906782,"score_gpt":0.22711955810570245,"score_spread":0.20353469447179567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2028747797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796635,0.00077572727,0.00074478844,0.000031865817,0.0001511035,0.00018862082,0.000023687231,0.000012907019,0.000104966435],"genre_scores_gemma":[0.9995163,0.00005943111,0.00021825102,0.0000104822775,0.000028626948,0.0000072056027,0.00007011514,0.000008393472,0.00008120107],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840057,0.00017632567,0.00094245793,0.00018911043,0.00009600754,0.00019551597],"domain_scores_gemma":[0.9982308,0.000059789552,0.0012176057,0.0001791985,0.00027365633,0.000038936716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005534806,0.00019493037,0.0004434158,0.00008676827,0.000054087926,0.0000061651176,0.00016093678,0.0004870305,0.00063935685],"category_scores_gemma":[0.00019513737,0.00014107341,0.0001492541,0.0000983872,0.00014827872,0.00016394701,0.00009622488,0.00033393898,0.0000062576846],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033185703,0.00023856956,0.00007908655,0.0000774585,0.00014526013,0.000020731433,0.00021304064,6.691918e-7,0.99302727,0.0001415345,0.000018134435,0.0027196598],"study_design_scores_gemma":[0.0016971763,0.0008515114,0.003098355,0.00019764838,0.000045286946,0.00025357722,0.00024230883,0.0000021041985,0.9921138,0.0013031003,0.000050316656,0.00014477797],"about_ca_topic_score_codex":0.00003321411,"about_ca_topic_score_gemma":7.0626174e-7,"teacher_disagreement_score":0.0030192684,"about_ca_system_score_codex":0.00006097224,"about_ca_system_score_gemma":0.000056422276,"threshold_uncertainty_score":0.7000509},"labels":[],"label_agreement":null},{"id":"W2029227990","doi":"10.1152/ajpregu.00398.2006","title":"Neonatal immune challenge exacerbates experimental colitis in adult rats: potential role for TNF-α","year":2006,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Corticosterone; Internal medicine; Medicine; Immune system; Colitis; Endocrinology; Proinflammatory cytokine; Tumor necrosis factor alpha; Inflammatory bowel disease; Cytokine; Inflammation; Saline; Immunology; Disease; Hormone","score_opus":0.008217744896636523,"score_gpt":0.24940595322059253,"score_spread":0.24118820832395602,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029227990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916187,0.006952781,0.00014917036,0.00022150022,0.0004220565,0.00040733258,0.000037261274,0.000019286932,0.00017189357],"genre_scores_gemma":[0.99882305,0.00016721456,0.00024999114,0.00009863214,0.00020703519,0.000099484634,0.0001552988,0.000021234222,0.00017809127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99692994,0.00097427197,0.0010114037,0.0004572846,0.000069448084,0.0005576459],"domain_scores_gemma":[0.997776,0.00040175268,0.0010536313,0.00023828179,0.00048880273,0.000041531337],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00025615195,0.00047175534,0.0014567866,0.0003166229,0.00022704796,0.000015793385,0.00032957763,0.0002004356,0.00012527616],"category_scores_gemma":[0.000033050685,0.00036655337,0.00032867852,0.00019768914,0.001912424,0.0003200031,0.000090322654,0.00052508496,0.000024919407],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006013473,0.00038586877,0.00006817154,0.000011079949,0.00033591717,0.000002881259,0.0023917735,0.0001663373,0.9767644,0.011485259,0.00048163207,0.0018932148],"study_design_scores_gemma":[0.0037280987,0.005897418,0.118639484,0.000106499676,0.000058503363,0.00011132962,0.023000363,0.00017065648,0.8415339,0.0043439995,0.0019499377,0.00045981398],"about_ca_topic_score_codex":0.0003450608,"about_ca_topic_score_gemma":0.00006325719,"teacher_disagreement_score":0.1352305,"about_ca_system_score_codex":0.00011497663,"about_ca_system_score_gemma":0.00013532446,"threshold_uncertainty_score":0.99987864},"labels":[],"label_agreement":null},{"id":"W2029376832","doi":"10.1002/eji.200323821","title":"Cooperation between toll‐like receptor 2 and 4 in the brain of mice challenged with cell wall components derived from gram‐negative and gram‐positive bacteria","year":2003,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Medical Research Council; Canadian Institutes of Health Research; Medical Research Council Canada; McGill University; Texas Tech University","keywords":"TLR2; TLR4; Innate immune system; Biology; Lipopolysaccharide; Toll-like receptor; CD14; Peptidoglycan; Receptor; Immunology; Tumor necrosis factor alpha; Immune system; Cell biology; Microbiology; Gene; Biochemistry","score_opus":0.01165763586864049,"score_gpt":0.19943443186851886,"score_spread":0.18777679599987837,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029376832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995104,0.003279695,0.00021860542,0.00079159695,0.00015184934,0.00018956409,0.000011895313,0.0000044890944,0.00024831362],"genre_scores_gemma":[0.99869686,0.00065023365,0.00039170627,0.00011908887,0.000015326805,0.0000013782665,0.000058324593,0.000015727052,0.000051354258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9945998,0.0044700657,0.0005512521,0.00015438763,0.000038737035,0.00018573954],"domain_scores_gemma":[0.99854106,0.000655466,0.00050587335,0.00013772318,0.00014548132,0.0000143958605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010098065,0.00017035248,0.00038271118,0.00014418575,0.000115202885,0.000019416464,0.00018222757,0.00009188659,0.000047728852],"category_scores_gemma":[0.00013105024,0.00011653589,0.000037932183,0.00008681612,0.00035326256,0.00017127083,0.00003721658,0.00044249362,0.000015288731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018085908,0.000079157,0.001157275,0.0000062888334,0.00027749132,0.000023807228,0.00804215,0.000001436208,0.98676527,0.000053404463,0.00005778047,0.0017273442],"study_design_scores_gemma":[0.007547277,0.0025171305,0.4643452,0.0001784604,0.00009729115,0.00034239993,0.0031692253,0.0000011277914,0.5174221,0.000043341086,0.0041196058,0.00021689125],"about_ca_topic_score_codex":0.0000366076,"about_ca_topic_score_gemma":0.000012789525,"teacher_disagreement_score":0.46934322,"about_ca_system_score_codex":0.000021359316,"about_ca_system_score_gemma":0.00004057707,"threshold_uncertainty_score":0.47521958},"labels":[],"label_agreement":null},{"id":"W2029955127","doi":"10.1002/eji.200737069","title":"Nod1 and Nod2 induce CCL5/RANTES through the NF‐κB pathway","year":2007,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Austrian Science Fund; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"NOD1; CCL5; Chemokine; NOD2; CXCL2; Biology; Nod; Innate immune system; Cell biology; Immune system; Immunology; Chemokine receptor; T cell; In vivo; IL-2 receptor","score_opus":0.012408861473589883,"score_gpt":0.22227414406457763,"score_spread":0.20986528259098775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2029955127","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96373427,0.025586184,0.0011915653,0.0015687463,0.0013956809,0.00009445022,0.0000015967752,0.000023230417,0.006404275],"genre_scores_gemma":[0.9973252,0.0010296279,0.00013490109,0.00041662893,0.00013155291,4.2772533e-7,0.0000046056966,0.000026283777,0.000930765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974164,0.0012431289,0.00077349733,0.0001412061,0.000047127218,0.00037865626],"domain_scores_gemma":[0.99858016,0.00036384113,0.000578399,0.00028013234,0.00018237635,0.00001506525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025124748,0.00018284864,0.00030133937,0.00014841446,0.00029465166,0.000025346446,0.00044510074,0.00011440738,0.00013967871],"category_scores_gemma":[0.0003475755,0.00011802528,0.00012024126,0.00013845427,0.0005033223,0.00023306657,0.00014470571,0.0008120695,0.00040138175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00079590565,0.000051499057,0.0001272873,0.0000046225546,0.0002992403,0.00013833643,0.002922504,8.029205e-7,0.9499652,0.0013605041,0.00082558655,0.043508507],"study_design_scores_gemma":[0.0023541453,0.0008567657,0.027299311,0.0000867269,0.00005203243,0.00506258,0.0024134477,2.4049743e-7,0.6060097,0.0001457661,0.35553545,0.0001838256],"about_ca_topic_score_codex":0.000010903508,"about_ca_topic_score_gemma":0.000002739463,"teacher_disagreement_score":0.35470986,"about_ca_system_score_codex":0.000025863956,"about_ca_system_score_gemma":0.000058067995,"threshold_uncertainty_score":0.5159084},"labels":[],"label_agreement":null},{"id":"W2030383845","doi":"10.1371/journal.ppat.1003152","title":"Cyclosporine A Impairs Nucleotide Binding Oligomerization Domain (Nod1)-Mediated Innate Antibacterial Renal Defenses in Mice and Human Transplant Recipients","year":2013,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Assistance publique-Hôpitaux de Paris; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche; California HIV/AIDS Research Program","keywords":"NOD1; CXCL2; NOD2; Biology; Innate immune system; TLR2; TLR4; Phagocytosis; Chemokine; Microbiology; Immunology; Pharmacology; Inflammation; Immune system; Chemokine receptor","score_opus":0.00871283133115456,"score_gpt":0.20811806283231452,"score_spread":0.19940523150115996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030383845","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987338,0.00009933,0.000011690868,0.00015697042,0.00024528863,0.00045794263,0.00008418529,0.00007853507,0.0001322176],"genre_scores_gemma":[0.9982697,0.00019917384,0.000081797865,0.0000632843,0.000030036867,0.000041386393,0.0011700143,0.000027437902,0.00011716648],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984586,0.00029849354,0.0004842841,0.00030294262,0.000051135004,0.0004044911],"domain_scores_gemma":[0.9995069,0.00008306966,0.00016744023,0.00015606984,0.000054467622,0.00003205463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023111586,0.00021364653,0.00030418637,0.0003238404,0.00019088748,0.000033170687,0.00011115022,0.00020152866,0.0002895504],"category_scores_gemma":[0.00006400838,0.00019964408,0.00005121008,0.00023172033,0.000103037426,0.00026585444,0.000042238487,0.00020469767,0.0003376092],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028541274,0.00011410677,0.030756405,0.0000171722,0.00007108662,0.000020363417,0.0013497869,0.000001098482,0.96691823,0.00005165736,0.000050385723,0.00036428965],"study_design_scores_gemma":[0.0028132084,0.00021522652,0.50825846,0.00021916458,0.00004621973,0.0000559906,0.000181087,0.000016842874,0.4869023,0.000058085756,0.00089365005,0.00033974118],"about_ca_topic_score_codex":0.00015202831,"about_ca_topic_score_gemma":0.000033728134,"teacher_disagreement_score":0.48001593,"about_ca_system_score_codex":0.000047065838,"about_ca_system_score_gemma":0.000027149908,"threshold_uncertainty_score":0.81412494},"labels":[],"label_agreement":null},{"id":"W2030692238","doi":"10.1073/pnas.1209253109","title":"Antibody WN1 222-5 mimics Toll-like receptor 4 binding in the recognition of LPS","year":2012,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Victoria","funders":"Eisai","keywords":"Lipid A; Receptor; Antibody; Toll-like receptor; Innate immune system; Immune system; Escherichia coli; Biology; Immunology; Cell biology; Lipopolysaccharide; Biochemistry; Gene","score_opus":0.047670180656652295,"score_gpt":0.3116524623923745,"score_spread":0.2639822817357222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030692238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99559623,0.00048469784,6.809851e-7,0.0010939309,0.00008464244,0.00015692622,0.000012963992,0.0000041962853,0.0025657262],"genre_scores_gemma":[0.9994685,0.00012548451,0.00016406918,0.00010707431,0.000030572934,0.0000065140466,0.000004483394,0.0000021376138,0.000091171394],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991591,0.000038100134,0.0003502022,0.000097061726,0.000195453,0.0001601007],"domain_scores_gemma":[0.99918073,0.00022600338,0.0004427203,0.0000085709935,0.00013688389,0.000005065469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002873565,0.000067037414,0.00012633186,0.00020926021,0.00014457415,0.000006664556,0.0004834534,0.00012698522,0.000041932828],"category_scores_gemma":[0.0004942546,0.000039568138,0.00005813729,0.00054127333,0.00053083396,0.0005241164,0.00005979202,0.00017499061,0.00001779973],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046179524,0.00005406232,0.00903643,0.0000270832,0.00001213701,6.1627137e-10,0.001072057,0.0000013023596,0.9848859,0.0036169363,0.0004476973,0.00080023764],"study_design_scores_gemma":[0.00021717856,0.000041681855,0.06026063,0.00012466041,0.00001135608,0.000012521812,0.0013179716,0.000008868762,0.93466115,0.0017156458,0.0015712123,0.000057145004],"about_ca_topic_score_codex":0.0000066667712,"about_ca_topic_score_gemma":4.504108e-8,"teacher_disagreement_score":0.051224202,"about_ca_system_score_codex":0.000019902016,"about_ca_system_score_gemma":0.000022165865,"threshold_uncertainty_score":0.19558798},"labels":[],"label_agreement":null},{"id":"W2030995593","doi":"10.1186/cc14039","title":"Aryl hydrocarbon receptor activation increases survival in polymicrobial sepsis","year":2014,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Children's Health Foundation; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa e Inovação do Estado de Santa Catarina; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Japan Society for the Promotion of Science; Russian Foundation for Basic Research; London Health Sciences Centre","keywords":"Medicine; Aryl hydrocarbon receptor; Sepsis; Severe sepsis; Hydrocarbon; Intensive care medicine; Bioinformatics; Internal medicine; Septic shock; Biochemistry; Organic chemistry","score_opus":0.010648947110504127,"score_gpt":0.2568273698069609,"score_spread":0.2461784226964568,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2030995593","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949302,0.0004053803,0.00014048969,0.0007481523,0.00051313674,0.00010479212,0.000009001971,0.00006349679,0.0030853467],"genre_scores_gemma":[0.99919385,0.000008243417,0.000026474198,0.00021102447,0.00008956598,0.000015778542,0.0003002252,0.000013897254,0.00014096264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989084,0.00031782384,0.0002358974,0.00021476271,0.00003576654,0.00028737393],"domain_scores_gemma":[0.9992056,0.0004797137,0.000027471331,0.00018645053,0.00008067513,0.000020090765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019290134,0.00012852445,0.00020081303,0.000121412384,0.00010521545,0.000018657907,0.00011033305,0.00025255926,0.0004180668],"category_scores_gemma":[0.0012085147,0.00012673506,0.000063860694,0.000118609365,0.00013453435,0.00014551144,0.00004753006,0.00022580787,0.00042129852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035103448,0.00006201038,0.002504841,0.000051781077,0.000011417855,8.3123916e-7,0.00044221594,0.0000016917799,0.9842492,0.0048133302,0.0004787532,0.0070328964],"study_design_scores_gemma":[0.0011305311,0.00019336915,0.016223794,0.00010067619,0.000021777425,0.0000053302597,0.0011202409,0.000010529635,0.9616895,0.00023419227,0.019016944,0.0002531315],"about_ca_topic_score_codex":0.00030544665,"about_ca_topic_score_gemma":0.000033410954,"teacher_disagreement_score":0.022559712,"about_ca_system_score_codex":0.00007751203,"about_ca_system_score_gemma":0.000043706386,"threshold_uncertainty_score":0.5415081},"labels":[],"label_agreement":null},{"id":"W2031051407","doi":"10.1038/cmi.2010.16","title":"Functional characterization of the NF-κB binding site in the human NOD2 promoter","year":2010,"lang":"en","type":"article","venue":"Cellular and Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Health Canada; Department of Education of Guangdong Province; Jinan University; Natural Science Foundation of Guangdong Province","keywords":"NOD2; Binding site; Transcription factor; Chromatin immunoprecipitation; Biology; Electrophoretic mobility shift assay; Molecular biology; Promoter; NF-κB; Reporter gene; Cell biology; Gene; Innate immune system; Gene expression; Genetics; Signal transduction; Receptor","score_opus":0.005595224328434183,"score_gpt":0.19251476880989424,"score_spread":0.18691954448146006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031051407","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975714,0.0004615366,0.00031152306,0.00057222595,0.0005539444,0.00026835763,0.000004992556,0.0000106094485,0.00024538432],"genre_scores_gemma":[0.99902576,0.000022056049,0.0000070093483,0.00012507508,0.000014515386,0.000022359161,0.00029650072,0.000009809899,0.00047689263],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900013,0.00035204305,0.00025787,0.00016268219,0.000035725006,0.00019157],"domain_scores_gemma":[0.9994534,0.000034147062,0.00013218174,0.00033488567,0.00004100715,0.0000043446776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003601377,0.000116818825,0.00014753453,0.00010945927,0.00019798377,0.00001314276,0.00020062372,0.0002535408,0.00014718804],"category_scores_gemma":[0.0000420843,0.0000753334,0.00007247539,0.00013820198,0.0002920977,0.00006393306,0.000090332476,0.00044901585,0.00006174696],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041766965,0.000045856294,0.0010599949,0.000007702144,0.000043796234,0.0000033471138,0.00058242516,2.5129117e-7,0.9944012,0.0029615394,0.00001889644,0.000833194],"study_design_scores_gemma":[0.0005951174,0.000053181393,0.055655465,0.000012511305,0.000022610273,0.000075270495,0.00005650801,0.000002529609,0.9330764,0.00010994961,0.010259045,0.00008142194],"about_ca_topic_score_codex":0.000026282303,"about_ca_topic_score_gemma":0.0000098580385,"teacher_disagreement_score":0.06132484,"about_ca_system_score_codex":0.0000072984517,"about_ca_system_score_gemma":0.000029105351,"threshold_uncertainty_score":0.3072007},"labels":[],"label_agreement":null},{"id":"W2031144746","doi":"10.1371/journal.pone.0087006","title":"Toll-Like Receptor 9 Signaling Delays Neutrophil Apoptosis by Increasing Transcription of Mcl-1","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"MG132; TLR9; Biology; Toll-Like Receptor 9; CpG site; Molecular biology; Cell biology; Apoptosis; DNA damage; Innate immune system; DNA; Receptor; DNA methylation; Proteasome inhibitor; Proteasome; Gene expression; Gene; Biochemistry","score_opus":0.017315601354748973,"score_gpt":0.19081844552171162,"score_spread":0.17350284416696266,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031144746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975734,0.00074414676,0.00059724564,0.00027974005,0.00013736355,0.00016369023,0.000012679006,0.000060828206,0.00043095724],"genre_scores_gemma":[0.9985628,0.00015099019,0.00045353017,0.00009698256,0.000036508638,0.000016597465,0.00022629621,0.000018104362,0.0004381942],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873567,0.00044977872,0.00035899572,0.00017404588,0.000056759764,0.00022472812],"domain_scores_gemma":[0.9993881,0.00015935933,0.00014475777,0.00019904952,0.000093081755,0.000015629503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004516883,0.00012833353,0.0002966179,0.00009690406,0.00012701956,0.000009526887,0.00012520493,0.00020811317,0.00037369115],"category_scores_gemma":[0.000111518624,0.00012824281,0.00007597866,0.00009650389,0.00007542562,0.00014694076,0.000017299062,0.00017313812,0.00024232737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056388264,0.00036250026,0.00018836676,0.000051250216,0.00023308453,3.9533727e-8,0.00030898515,0.0000030261351,0.99644977,0.00021074289,0.00037746163,0.0012508705],"study_design_scores_gemma":[0.0007915079,0.00025393144,0.00015119356,0.0001568135,0.00014052536,0.0000022013564,0.0000649088,0.000035748533,0.9960134,0.00004795459,0.0022061805,0.00013563529],"about_ca_topic_score_codex":0.00008629625,"about_ca_topic_score_gemma":0.0000011578516,"teacher_disagreement_score":0.0018287187,"about_ca_system_score_codex":0.000029704233,"about_ca_system_score_gemma":0.000019128149,"threshold_uncertainty_score":0.52295905},"labels":[],"label_agreement":null},{"id":"W2031219310","doi":"10.1371/journal.pone.0100613","title":"A Systems Biology Approach to the Analysis of Subset-Specific Responses to Lipopolysaccharide in Dendritic Cells","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Health and Medical Research Council; Medical Research Council; Canadian Institutes of Health Research; Cancer Institute NSW","keywords":"Biology; Transcriptome; Immune system; Lipopolysaccharide; CD8; Cell biology; Immunology; Dendritic cell; Computational biology; In vivo; Gene; Gene expression; Genetics","score_opus":0.03598063634247618,"score_gpt":0.23021582851090713,"score_spread":0.19423519216843094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031219310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960818,0.0012584152,0.0012568003,0.00035803267,0.0001300711,0.0004851249,0.000025487334,0.000025193078,0.00037905012],"genre_scores_gemma":[0.9984248,0.00006293517,0.00019419473,0.00011392868,0.00002781888,0.00012482691,0.000056601628,0.000010910717,0.000983956],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978894,0.0010144707,0.0004720858,0.00027070445,0.000051309355,0.0003020481],"domain_scores_gemma":[0.9986905,0.0005485802,0.00010424129,0.0005404061,0.00009438937,0.000021886584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010167073,0.00013096794,0.0005326128,0.00081068213,0.000075060074,0.000014607435,0.0003420307,0.00016458686,0.00005324481],"category_scores_gemma":[0.00028757137,0.00009905241,0.000086137785,0.0007821913,0.00007001977,0.000037736212,0.000078228426,0.0001609838,0.00044325113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053923315,0.00039082,0.0016285948,0.000025600219,0.0009072863,3.0694255e-7,0.0010217328,0.00019758241,0.99213487,0.0026082308,0.00019504796,0.00035067034],"study_design_scores_gemma":[0.00050469226,0.00029875187,0.015810102,0.00009276635,0.00062673667,0.0000028648417,0.00053561456,0.00043974852,0.9753277,0.000019473366,0.006117882,0.00022371464],"about_ca_topic_score_codex":0.00029933613,"about_ca_topic_score_gemma":0.000054446926,"teacher_disagreement_score":0.016807241,"about_ca_system_score_codex":0.00003959642,"about_ca_system_score_gemma":0.000024316525,"threshold_uncertainty_score":0.56972444},"labels":[],"label_agreement":null},{"id":"W2031445899","doi":"10.1128/iai.00762-07","title":"Neutrophils Play an Important Role in Host Resistance to Respiratory Infection with <i>Acinetobacter baumannii</i> in Mice","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"National Research Council Canada","keywords":"Biology; Chemokine; Acinetobacter baumannii; Immunology; Proinflammatory cytokine; Macrophage inflammatory protein; Microbiology; Tumor necrosis factor alpha; Pneumonia; Respiratory system; Spleen; Respiratory infection; Immune system; Inflammation; Medicine; Bacteria; Internal medicine; Pseudomonas aeruginosa","score_opus":0.00830968665926941,"score_gpt":0.24064591800524293,"score_spread":0.23233623134597353,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031445899","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974785,0.00052896095,0.000100293655,0.000065395514,0.00020783156,0.00033939685,0.0000021374783,0.00005929905,0.001218188],"genre_scores_gemma":[0.99918604,0.00014888818,0.00001528722,0.00033282724,0.000025115689,0.000024676187,0.000034614863,0.000015333824,0.00021722671],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984806,0.00042946654,0.0004770908,0.00024397239,0.00003844635,0.00033038692],"domain_scores_gemma":[0.99941653,0.0000827588,0.00013275123,0.0002561796,0.00007680468,0.000034988017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001389189,0.00018297693,0.00022611672,0.0005324849,0.00018850318,0.000028017581,0.00006401954,0.00023245682,0.000045845798],"category_scores_gemma":[0.0000641336,0.00016879341,0.000028061188,0.00047766918,0.00008050347,0.00047324007,0.00003766205,0.0005142003,0.000043318676],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017341255,0.0001608314,0.2619215,0.0000127635385,0.000015839534,0.000006812479,0.0010957167,0.000015633206,0.7334654,0.00014180166,0.000049104652,0.0013805353],"study_design_scores_gemma":[0.0012278007,0.00045951598,0.80814064,0.00006876157,0.0000068175987,0.000023470795,0.0001294123,0.0000013303787,0.15791215,0.000027676417,0.031821493,0.0001809545],"about_ca_topic_score_codex":0.0035627228,"about_ca_topic_score_gemma":0.03043675,"teacher_disagreement_score":0.5755532,"about_ca_system_score_codex":0.00012899975,"about_ca_system_score_gemma":0.000047851743,"threshold_uncertainty_score":0.9872553},"labels":[],"label_agreement":null},{"id":"W2031632997","doi":"10.1007/s00441-014-1803-2","title":"IL-10 secreting CD21+ B cells are present in jejunal Peyer’s patches of sheep during fetal development","year":2014,"lang":"en","type":"article","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Canadian Institutes of Health Research","keywords":"Biology; Immunology; Cytokine; Antibody; B cell; TLR9; Antigen; Lymphocyte; CpG Oligodeoxynucleotide; Population; Molecular biology; Medicine","score_opus":0.023936737341951866,"score_gpt":0.2803542332572456,"score_spread":0.2564174959152938,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031632997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948099,0.0021570243,0.000021015954,0.000112092755,0.00007381218,0.00021439446,0.000001475849,0.00001228865,0.0025979918],"genre_scores_gemma":[0.98793834,0.0001955089,0.000064941254,0.0000019192016,0.00003422822,0.00002028096,0.000024455983,0.000011631483,0.011708709],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833256,0.0005324414,0.00033228283,0.00024792232,0.000105813444,0.0004489829],"domain_scores_gemma":[0.9993136,0.00028715777,0.0000815503,0.00017782924,0.000110907415,0.00002898608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013692023,0.000116335475,0.0002299472,0.00025712207,0.00021106162,0.00001956973,0.00015866669,0.00017289602,0.0003775289],"category_scores_gemma":[0.000090511094,0.00010492711,0.000025658315,0.00015394585,0.00017372302,0.00007346757,0.00021895953,0.00035423605,0.0002962514],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024809106,0.00007446583,0.002996095,0.00026664484,0.000018216082,0.000008242393,0.0015839329,0.0000102695085,0.9824736,0.000029933744,0.0001799929,0.012110519],"study_design_scores_gemma":[0.0007596059,0.00009701499,0.027722698,0.00011383494,0.0000029037315,0.000006721079,0.0007547459,0.0000347958,0.93223286,0.000027621043,0.03813894,0.00010824159],"about_ca_topic_score_codex":0.00013249149,"about_ca_topic_score_gemma":0.000037008973,"teacher_disagreement_score":0.05024072,"about_ca_system_score_codex":0.000040857933,"about_ca_system_score_gemma":0.00007267627,"threshold_uncertainty_score":0.42788032},"labels":[],"label_agreement":null},{"id":"W2031731180","doi":"10.1016/j.dental.2014.08.302","title":"Cytokine secretion screening of odontoblasts treated with chlorhexidine and epigallocatechin-gallate","year":2014,"lang":"en","type":"article","venue":"Dental Materials","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Materials science; Chlorhexidine; Gallate; Odontoblast; Secretion; Cytokine; Epigallocatechin gallate; Dentistry; Pharmacology; Composite material; Medicine; Dentin; Biology; Biochemistry; Internal medicine; Polyphenol","score_opus":0.005784202294100328,"score_gpt":0.19876728793637452,"score_spread":0.1929830856422742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031731180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988588,0.000108329084,0.00043864505,0.000034907986,0.00010142194,0.00017274951,0.000015093655,0.000048529895,0.00022154208],"genre_scores_gemma":[0.9992237,0.000038036247,0.00013377819,0.000017188144,0.000020500449,0.000009031896,0.0002433067,0.000014478981,0.00029999434],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992189,0.00017093665,0.00027122512,0.00015065349,0.000030403922,0.0001578915],"domain_scores_gemma":[0.99961793,0.000038000027,0.00016519205,0.00013000953,0.000037155914,0.0000117185045],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030632748,0.00013074078,0.00027008343,0.00008699587,0.00007060871,0.000017382055,0.00006532543,0.000118711956,0.00023961389],"category_scores_gemma":[0.000028894608,0.000100234945,0.0000203963,0.000056095872,0.00010645419,0.00011626331,0.000043473516,0.000045504818,0.00005895358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014050797,0.000017786047,0.0018796785,0.000040664116,0.00006625229,0.0000013990872,0.00007583287,0.0000021928267,0.99477303,0.00034538418,0.000010881005,0.0013818168],"study_design_scores_gemma":[0.0013417794,0.00038508011,0.039072674,0.00009789164,0.000033955737,0.00009946832,0.00003756155,0.000009894771,0.9579021,0.000020260153,0.00088816456,0.000111190464],"about_ca_topic_score_codex":0.00018115282,"about_ca_topic_score_gemma":0.00001624118,"teacher_disagreement_score":0.037192993,"about_ca_system_score_codex":0.000009713959,"about_ca_system_score_gemma":0.0000055929418,"threshold_uncertainty_score":0.40874624},"labels":[],"label_agreement":null},{"id":"W2031743395","doi":"10.1016/j.smim.2006.12.006","title":"The intestinal epithelial barrier: How to distinguish between the microbial flora and pathogens","year":2007,"lang":"en","type":"review","venue":"Seminars in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":204,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Immune system; Biology; Microbiology; Flora (microbiology); Immunity; Gastrointestinal tract; Bacteria; Innate immune system; Colonisation resistance; Commensalism; Barrier function; Intestinal mucosa; Immunology; Colonization; Cell biology; Medicine","score_opus":0.02183030377650234,"score_gpt":0.288650835133894,"score_spread":0.26682053135739164,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031743395","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0040305424,0.9916175,0.00006514703,0.0005242072,0.0022126976,0.0011585793,0.00010274324,0.00005469073,0.0002339063],"genre_scores_gemma":[0.0005833164,0.9957272,0.00008523909,0.00006629335,0.00031159684,0.00016311694,0.0002973588,0.00006864915,0.0026972727],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9955737,0.0017111563,0.0010196817,0.000618228,0.00005367306,0.0010235612],"domain_scores_gemma":[0.9944623,0.003977299,0.0005103602,0.0009068167,0.000111214,0.00003199923],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0024568648,0.0006354823,0.0014407454,0.00039738533,0.0008317714,0.00009890014,0.0011656279,0.0011231274,0.000038862803],"category_scores_gemma":[0.002671163,0.00038338112,0.0003202351,0.0005168711,0.0012111762,0.000060060705,0.0007568737,0.0018836402,0.0003392527],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015468424,0.000015271493,0.000050936564,0.00022334572,0.00030340953,0.00002587941,0.00050594396,5.278831e-8,0.0032095993,0.00025117333,0.0016423488,0.99361736],"study_design_scores_gemma":[0.00035651604,0.00026443138,0.0002150913,0.0029118075,0.000289007,0.00086106674,0.0002907312,9.254841e-8,0.00080916664,0.00007463213,0.99351126,0.00041621365],"about_ca_topic_score_codex":0.00005492655,"about_ca_topic_score_gemma":0.00006682078,"teacher_disagreement_score":0.99320114,"about_ca_system_score_codex":0.00019085608,"about_ca_system_score_gemma":0.00029831086,"threshold_uncertainty_score":0.99986184},"labels":[],"label_agreement":null},{"id":"W2031901387","doi":"10.1046/j.1439-0450.2000.00395.x","title":"<i>In Vitro</i> and <i>In Vivo</i> Effects of an Immunomodulator Composed of <i>Escherichia Coli</i> Lipopolysaccharide and <i>Propionibacterium granulosum</i>‐Inactivated Cells in Pigs","year":2000,"lang":"en","type":"article","venue":"Journal of Veterinary Medicine Series B","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Eurostars; Institute of Nutrition, Metabolism and Diabetes","keywords":"Peripheral blood mononuclear cell; Lipopolysaccharide; Cytokine; In vivo; Tumor necrosis factor alpha; Molecular biology; Antibody; Biology; Interleukin; Ex vivo; Microbiology; In vitro; Immunology; Biochemistry","score_opus":0.005940245519275573,"score_gpt":0.22556009036707447,"score_spread":0.2196198448477989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2031901387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959613,0.0030345188,0.000002286957,0.0002892354,0.00037305045,0.000264601,0.0000071008267,0.0000052108976,0.00006268297],"genre_scores_gemma":[0.9972324,0.0023692597,0.00012106871,0.000120804405,0.000029763482,0.0000048504644,0.0000070272445,0.000017188206,0.00009764019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99787354,0.0005398422,0.0010868597,0.00017043678,0.000077797624,0.0002515013],"domain_scores_gemma":[0.9990029,0.00022534073,0.00047975374,0.00018487951,0.000071144175,0.000036026686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058300886,0.00022333045,0.00089119514,0.0003602476,0.000033131477,0.0000050998246,0.00015865156,0.00017727855,0.000087217406],"category_scores_gemma":[0.000049741535,0.00018524137,0.00005079909,0.00022502222,0.000397683,0.00061020104,0.00003708263,0.00038350714,8.703653e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019912032,0.00025831655,0.0003253499,0.00031237447,0.000047608588,0.00018863853,0.001586341,0.000006283093,0.97594494,0.0000061989485,0.00003135332,0.0013805513],"study_design_scores_gemma":[0.006539583,0.005302879,0.021074163,0.0007452564,0.000033930333,0.0007104359,0.00036362268,0.000007701623,0.9631029,0.000028729337,0.0019413866,0.00014941898],"about_ca_topic_score_codex":0.00033781107,"about_ca_topic_score_gemma":0.000010891501,"teacher_disagreement_score":0.020748813,"about_ca_system_score_codex":0.00003776997,"about_ca_system_score_gemma":0.000077778415,"threshold_uncertainty_score":0.7553924},"labels":[],"label_agreement":null},{"id":"W2032211683","doi":"10.1097/01.ccm.0b013e3181620652","title":"Acute phase response impairs host defense against Pseudomonas aeruginosa pneumonia in mice*","year":2008,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Pseudomonas aeruginosa; Medicine; Pneumonia; Acute-phase protein; Immunology; Ex vivo; Inflammation; Lung; In vivo; Proinflammatory cytokine; Microbiology; Internal medicine; Biology; Bacteria","score_opus":0.01595230420695377,"score_gpt":0.3012402491674072,"score_spread":0.28528794496045345,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032211683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9830231,0.007927309,0.00008339425,0.0064857174,0.00079331646,0.00028176772,0.000030639152,0.00010815642,0.0012665743],"genre_scores_gemma":[0.99772286,0.00034423653,0.000040298437,0.0010320757,0.0000924492,0.000038524515,0.00023620493,0.000026457288,0.00046688967],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99753565,0.00076048455,0.00059865176,0.00038563577,0.00010324479,0.0006163382],"domain_scores_gemma":[0.9981351,0.0011315258,0.000056682013,0.00037406117,0.00022136202,0.000081282175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000557215,0.0002834987,0.0005224527,0.00035479097,0.0002644482,0.0000063186835,0.000223555,0.00033956577,0.00035135032],"category_scores_gemma":[0.002074177,0.00023644333,0.00010823623,0.0002854709,0.0011646436,0.0001451093,0.000070638416,0.0005698824,0.0005242474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006562353,0.00014250241,0.0005077287,0.00004212677,0.000043581815,0.0015055797,0.0051053907,5.266974e-7,0.9814379,0.00032117538,0.0023181725,0.0020129338],"study_design_scores_gemma":[0.031328157,0.0064112633,0.031978153,0.0007780489,0.00038558326,0.003821194,0.017722808,0.000030875617,0.82760006,0.00012871232,0.07860318,0.0012119885],"about_ca_topic_score_codex":0.000053738648,"about_ca_topic_score_gemma":0.000012124522,"teacher_disagreement_score":0.15383789,"about_ca_system_score_codex":0.00014088383,"about_ca_system_score_gemma":0.00018487425,"threshold_uncertainty_score":0.9641879},"labels":[],"label_agreement":null},{"id":"W2032388711","doi":"10.1016/j.brainres.2006.03.112","title":"Differential expression of the CD14/TLR4 complex and inflammatory signaling molecules following i.c.v. administration of LPS","year":2006,"lang":"en","type":"article","venue":"Brain Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"TLR4; Inflammation; Choroid plexus; Ependyma; CD14; Neuroinflammation; Meninges; Microglia; Parenchyma; Lipopolysaccharide; Biology; Pathology; Central nervous system; Medicine; Immunology; Immune system; Endocrinology","score_opus":0.03279694177823911,"score_gpt":0.3140752208035587,"score_spread":0.2812782790253196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032388711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819034,0.00042352805,0.00017094042,0.0002506554,0.000076012875,0.00024382249,0.0000038728913,0.000009691402,0.00063113356],"genre_scores_gemma":[0.9993109,0.0000066551866,0.00004435966,0.0000059694935,0.000021455142,0.000011450678,0.000041366522,0.000007864611,0.0005499816],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983983,0.0008024996,0.00032945623,0.00013609244,0.00012865449,0.00020498806],"domain_scores_gemma":[0.99907947,0.00048787784,0.000112616566,0.00020806346,0.00010379144,0.000008181379],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006867062,0.000078205056,0.0001528027,0.00013221464,0.00022136582,0.0000130178005,0.00017388944,0.00013537664,0.00012823056],"category_scores_gemma":[0.00025430744,0.000057140838,0.00007976567,0.00012898537,0.00028995128,0.00006631572,0.00013642105,0.00020414306,0.0000062278677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027691663,0.000042127853,0.0014155185,0.00004732265,0.000018859775,0.0000015027348,0.00018504515,0.000006546068,0.995244,0.0014207662,0.00065833755,0.00068301056],"study_design_scores_gemma":[0.00055536523,0.000086990156,0.07239694,0.000105939194,0.0000060472344,0.000005049314,0.00020500751,0.000026817463,0.9254829,0.00031837675,0.00075933593,0.000051182025],"about_ca_topic_score_codex":0.00006403549,"about_ca_topic_score_gemma":0.00001125049,"teacher_disagreement_score":0.07098142,"about_ca_system_score_codex":0.000014059521,"about_ca_system_score_gemma":0.000090430076,"threshold_uncertainty_score":0.23301357},"labels":[],"label_agreement":null},{"id":"W2032728957","doi":"10.1159/000231591","title":"Inflammation-Inducing Factors from Human Lymphocytes","year":2009,"lang":"en","type":"article","venue":"International Archives of Allergy and Applied Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Immunology; Inflammation; Medicine; Biology","score_opus":0.007314571697663648,"score_gpt":0.21923815583374215,"score_spread":0.2119235841360785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2032728957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98180014,0.000740425,0.0002519656,0.00041567956,0.0002705008,0.000090064226,0.000011023739,0.00004610046,0.016374113],"genre_scores_gemma":[0.99838006,0.00028738513,0.00015550033,0.0000469687,0.00004819311,0.0000072661724,0.000520125,0.000007696509,0.00054680574],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990674,0.000062849205,0.0004170775,0.00023052176,0.00003840954,0.00018368797],"domain_scores_gemma":[0.99931055,0.00025289366,0.00022451174,0.00017310887,0.000027590157,0.000011363432],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000054269174,0.00016525757,0.00024036929,0.0002184057,0.00015591565,0.000013473919,0.0002874035,0.00014632601,0.0003537503],"category_scores_gemma":[0.000033677006,0.00015215999,0.00006771923,0.00004143871,0.00024340779,0.00009865765,0.000086104505,0.00016797366,0.000033205673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037826816,0.000044991993,0.00015536448,0.0000010272673,0.00055083283,6.578226e-7,0.0013845301,0.00002095152,0.90204775,0.046327636,0.000019356872,0.0490686],"study_design_scores_gemma":[0.0012604056,0.000112762005,0.16138601,0.000028187236,0.000009528486,0.000007119193,0.00038391646,0.000011113928,0.813682,0.01298745,0.00998331,0.0001481735],"about_ca_topic_score_codex":0.00015089613,"about_ca_topic_score_gemma":0.000012878576,"teacher_disagreement_score":0.16123064,"about_ca_system_score_codex":0.000015755519,"about_ca_system_score_gemma":0.000027340844,"threshold_uncertainty_score":0.62049043},"labels":[],"label_agreement":null},{"id":"W2033489525","doi":"10.1128/jvi.02305-09","title":"Molecular Characterization of<i>In Vivo</i>Adjuvant Activity in Ferrets Vaccinated against Influenza Virus","year":2010,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institutes of Health; Shantou University Medical College; Li Ka Shing Foundation","keywords":"Adjuvant; Biology; Virology; CpG Oligodeoxynucleotide; Vaccination; Virus; Influenza A virus; Interferon; Major histocompatibility complex; Immunology; Antigen; Gene expression; Gene","score_opus":0.006731595909626387,"score_gpt":0.2436200433603317,"score_spread":0.2368884474507053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033489525","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859756,0.00018855085,0.00009280836,0.00023271299,0.00067031354,0.00010702084,0.0000042322745,0.0000052073883,0.00010157677],"genre_scores_gemma":[0.99960655,0.0001177901,0.000013756677,0.00020794105,0.000017929671,0.0000027034514,0.000006618528,0.000009672221,0.00001704651],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985715,0.00042031868,0.000645853,0.000107665364,0.000038038488,0.00021661246],"domain_scores_gemma":[0.9990151,0.000087689696,0.0006260052,0.00015489933,0.00010198517,0.000014313877],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006773147,0.00011989275,0.00042662586,0.0004973551,0.00002345755,0.000004310008,0.00017695398,0.0003989123,0.00013750345],"category_scores_gemma":[0.00016272962,0.00010802744,0.000084811916,0.00018315527,0.000067217166,0.00023293067,0.000038439273,0.00073991553,0.000017853064],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016164933,0.00018707613,0.005153695,0.000008743364,0.00004342226,0.00007558307,0.00023125614,0.000048460974,0.98819906,0.000085946056,0.000007846218,0.0043424433],"study_design_scores_gemma":[0.001614175,0.0002098717,0.26170573,0.000019225237,0.000010538391,0.00012208043,0.000010552545,0.000035302073,0.73417556,0.000039023853,0.0019907253,0.00006718658],"about_ca_topic_score_codex":0.000027904172,"about_ca_topic_score_gemma":0.00005261102,"teacher_disagreement_score":0.25655204,"about_ca_system_score_codex":0.000031098974,"about_ca_system_score_gemma":0.000096570424,"threshold_uncertainty_score":0.4405231},"labels":[],"label_agreement":null},{"id":"W2033745905","doi":"10.3168/jds.s0022-0302(03)73832-6","title":"Elevated Milk Soluble CD14 in Bovine Mammary Glands Challenged with Escherichia coli Lipopolysaccharide","year":2003,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":86,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; McGill University","funders":"","keywords":"Lactation; Lactoferrin; Lipopolysaccharide; Somatic cell count; Biology; Inflammation; Andrology; Endocrinology; Internal medicine; Immunology; Chemistry; Medicine; Ice calving; Biochemistry; Pregnancy","score_opus":0.011670597062472823,"score_gpt":0.2331880895397282,"score_spread":0.22151749247725538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033745905","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952026,0.0017701471,0.00051306904,0.00046745874,0.00061150506,0.00008860739,4.0958943e-7,0.000011598506,0.001334594],"genre_scores_gemma":[0.9982999,0.00020124475,0.00060976855,0.00010404688,0.000017253726,0.0000020627135,0.0000013128363,0.000006321664,0.0007581091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872017,0.00018759252,0.0004481583,0.00016107495,0.00012422392,0.00035877712],"domain_scores_gemma":[0.99913245,0.000070762595,0.0003401639,0.00020972331,0.00020944793,0.000037429065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018152061,0.0001222473,0.00025253548,0.0003726335,0.00017478444,0.000035394693,0.00042244841,0.00009972765,0.000096277996],"category_scores_gemma":[0.00030054228,0.00008875088,0.000046012086,0.0005423079,0.00028299456,0.0007851704,0.00003857492,0.00039767628,0.000028099354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006155856,0.000093693365,0.0024632358,0.000006672129,0.000028540215,0.00004293667,0.0004964402,0.000025527783,0.99425876,0.001042889,0.00026896392,0.00065677427],"study_design_scores_gemma":[0.0035473458,0.0013427592,0.025051612,0.00012673429,0.000020853537,0.0007281715,0.0005368693,0.00004249831,0.95292723,0.00020271052,0.015251491,0.00022175221],"about_ca_topic_score_codex":0.000020185154,"about_ca_topic_score_gemma":0.000021853104,"teacher_disagreement_score":0.041331537,"about_ca_system_score_codex":0.00007837508,"about_ca_system_score_gemma":0.0008082348,"threshold_uncertainty_score":0.3619156},"labels":[],"label_agreement":null},{"id":"W2033862008","doi":"10.1177/1753425907087257","title":"Structural investigations into the interaction of hemoglobin and part structures with bacterial endotoxins","year":2008,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Lipopolysaccharide; Lipid A; Hemoglobin; Biophysics; Chemistry; Bacterial outer membrane; Heptose; Micelle; Heme; Membrane; Mutant; Biochemistry; Crystallography; Biology","score_opus":0.017931461646473672,"score_gpt":0.23550130740128067,"score_spread":0.217569845754807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2033862008","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986138,0.00028492848,0.000009756462,0.0004023391,0.00030344178,0.0001789496,0.00000796382,0.000027513792,0.0001713536],"genre_scores_gemma":[0.999549,0.000079611396,0.00007716816,0.00006897462,0.00002492752,0.0000103035645,0.00011993885,0.000007330626,0.000062747094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991515,0.00035426544,0.00024168858,0.000100157,0.000031723,0.00012064081],"domain_scores_gemma":[0.9994079,0.0001259212,0.00016510968,0.00021695234,0.00007173312,0.000012388971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010669135,0.000117820775,0.00015895674,0.000053712683,0.00044154373,0.000011967588,0.00014222051,0.00009124864,0.00013889867],"category_scores_gemma":[0.000119258046,0.00007439333,0.000029349518,0.000114009265,0.0006403389,0.00021601765,0.00007220054,0.00030795112,0.000012084493],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093161885,0.000011352117,0.0022066822,0.0000129168075,0.0001209072,0.0000016003371,0.0075010727,0.000011234948,0.9860257,0.0010046281,0.00018230351,0.0019899951],"study_design_scores_gemma":[0.0009842152,0.00029061895,0.06728739,0.000024281806,0.000027983757,0.00026673844,0.0007712595,0.000015953316,0.9165395,0.00043864438,0.013229984,0.00012341615],"about_ca_topic_score_codex":0.0005647613,"about_ca_topic_score_gemma":0.00004742148,"teacher_disagreement_score":0.06948618,"about_ca_system_score_codex":0.000018675153,"about_ca_system_score_gemma":0.00006802945,"threshold_uncertainty_score":0.3396042},"labels":[],"label_agreement":null},{"id":"W2034181316","doi":"10.1179/096805105x37394","title":"Anti-endotoxin properties of cationic host defence peptides and proteins","year":2005,"lang":"en","type":"review","venue":"Journal of Endotoxin Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Genome Prairie; Genome British Columbia","keywords":"Innate immune system; Biology; Antimicrobial peptides; Immune system; Immunity; Acquired immune system; Inflammation; Receptor; Host (biology); Immunology; Microbiology; Antimicrobial; Ecology; Biochemistry","score_opus":0.16009749506798726,"score_gpt":0.40110472533848873,"score_spread":0.24100723027050147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034181316","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014451324,0.9838284,0.000007651857,0.000092825954,0.00015405237,0.0011581691,0.000009273419,0.000007800026,0.00029048254],"genre_scores_gemma":[0.021544192,0.9758193,0.00010846991,0.0000037589255,0.0001341068,0.0000764318,0.000010396284,0.000034307333,0.0022690664],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9954572,0.002037427,0.0014882389,0.00024277743,0.0002741875,0.0005001795],"domain_scores_gemma":[0.99694717,0.0006171843,0.0011175618,0.0003810519,0.00089154294,0.00004547469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038340848,0.0002891875,0.0015392107,0.00115885,0.00023906665,0.000056310288,0.00064380176,0.000460892,0.00016465441],"category_scores_gemma":[0.0016075931,0.00019683648,0.00036687998,0.00043823497,0.00066438934,0.00030887773,0.00021128138,0.0017545775,0.00013152922],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002765463,0.00026929379,0.000024285186,0.010322687,0.0007283471,0.000033806486,0.00049996143,0.0000013925858,0.4307869,0.00029818367,0.00118317,0.55557543],"study_design_scores_gemma":[0.0005903415,0.00052269193,0.000047438323,0.0159117,0.00015428595,0.001263495,0.00015919917,5.4386413e-7,0.15727793,0.000013471286,0.82386184,0.00019704312],"about_ca_topic_score_codex":0.000041212457,"about_ca_topic_score_gemma":0.000007772598,"teacher_disagreement_score":0.8226787,"about_ca_system_score_codex":0.00016244037,"about_ca_system_score_gemma":0.001435409,"threshold_uncertainty_score":0.8026759},"labels":[],"label_agreement":null},{"id":"W2034285135","doi":"10.1016/s0016-5085(00)70362-3","title":"Antibiotic therapy attenuates colitis in interleukin 10 gene–deficient mice","year":2000,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":234,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Colitis; Metronidazole; Neomycin; Antibiotics; Bacteria; Ciprofloxacin; Microbiology; Medicine; Inflammation; Biology; Immunology","score_opus":0.008436271850699454,"score_gpt":0.2165677753459177,"score_spread":0.20813150349521825,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034285135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711156,0.0008041295,0.000019561949,0.00073562446,0.00031585473,0.00021006419,0.000009699632,0.000047259946,0.00074622204],"genre_scores_gemma":[0.9954226,0.00037736155,0.0000335328,0.0007544669,0.000023194327,0.000015791813,0.00013246294,0.000015054425,0.0032255484],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99827504,0.00046059676,0.0003819097,0.0002941157,0.000025610823,0.0005627036],"domain_scores_gemma":[0.9995868,0.000050704446,0.00007467589,0.00023994097,0.000032368727,0.000015518208],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025028913,0.0001764755,0.0002891702,0.00018420501,0.00006935157,0.000011801511,0.00022457812,0.00018138182,0.0048505818],"category_scores_gemma":[0.00001660386,0.00016418754,0.000081155944,0.00009393359,0.00017581145,0.00007861949,0.000035272646,0.00021904141,0.0028093928],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011611326,0.0004919894,0.050559416,0.000012086729,0.00017701965,0.00005977361,0.0011469875,0.00009506836,0.88610667,0.00006634917,0.005195378,0.04447794],"study_design_scores_gemma":[0.008490472,0.0029227324,0.56998444,0.000063734085,0.000022671391,0.0008567194,0.00021722984,0.000049607672,0.32915893,0.00005951457,0.087884575,0.0002893804],"about_ca_topic_score_codex":0.00013209235,"about_ca_topic_score_gemma":0.00011169771,"teacher_disagreement_score":0.5569477,"about_ca_system_score_codex":0.000053158863,"about_ca_system_score_gemma":0.000020825597,"threshold_uncertainty_score":0.99796706},"labels":[],"label_agreement":null},{"id":"W2034394906","doi":"10.1007/s00134-003-1796-x","title":"Coupled plasma filtration adsorption","year":2003,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bell (Canada)","funders":"","keywords":"Septic shock; Sepsis; Medicine; Immunosuppression; Shock (circulatory); Intensive care medicine; Inflammation; Organ dysfunction; Immunology; Pharmacology; Internal medicine","score_opus":0.013618583598487102,"score_gpt":0.25051969890215214,"score_spread":0.23690111530366503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034394906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9835387,0.0049396837,0.0010473658,0.001612984,0.0023771338,0.00027899106,0.0000024797644,0.00008469747,0.006117966],"genre_scores_gemma":[0.99619293,0.000110370675,0.000015005992,0.0012050202,0.000052580133,0.000018270535,0.00035108687,0.000010449133,0.0020443075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918485,0.00016933886,0.0002564829,0.00016649357,0.00004116379,0.00018170066],"domain_scores_gemma":[0.99796563,0.0001390853,0.00009789601,0.00018349984,0.0015997024,0.000014183288],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00016112649,0.00012586368,0.00020792127,0.00011703903,0.00008245665,0.0000038595895,0.0000617844,0.00015913793,0.0014393522],"category_scores_gemma":[0.0025106673,0.000097858894,0.00004350733,0.000107792555,0.00016558346,0.00007597607,0.000008314956,0.00017893621,0.0007590502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019307421,0.0000053510016,0.00023947665,0.000013614405,0.00004963248,0.0000059043628,0.0036872227,0.000004765357,0.9761027,0.0020256834,0.015225045,0.002447507],"study_design_scores_gemma":[0.0032514227,0.000735938,0.0022644573,0.00017898828,0.000085466505,0.0002699386,0.03792915,0.000033689616,0.7713712,0.00014124342,0.1835318,0.0002066927],"about_ca_topic_score_codex":0.000050593746,"about_ca_topic_score_gemma":0.000013025776,"teacher_disagreement_score":0.20473151,"about_ca_system_score_codex":0.000058966943,"about_ca_system_score_gemma":0.000048438986,"threshold_uncertainty_score":0.99947345},"labels":[],"label_agreement":null},{"id":"W2034779847","doi":"10.1159/000380910","title":"Sequential Immune Responses: The Weapons of Immunity","year":2015,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"National Heart, Lung, and Blood Institute","keywords":"Immune system; Innate immune system; Biology; Immunity; Acquired immune system; Macrophage; Immunology; Host (biology); Antigen; CCL18; Genetics; In vitro","score_opus":0.06781719523171753,"score_gpt":0.3491689502938698,"score_spread":0.28135175506215226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034779847","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008219473,0.9878574,0.000024117484,0.000110412526,0.0023861916,0.0005400924,0.000075596225,0.000020847945,0.00076584343],"genre_scores_gemma":[0.0041954005,0.99369705,0.000035234778,0.000018342093,0.00010941963,0.000014444115,0.00015224259,0.00006159947,0.0017162719],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98593336,0.009742827,0.0034337868,0.00017099759,0.00023080967,0.00048824403],"domain_scores_gemma":[0.9902059,0.0016389338,0.0054466226,0.0013983554,0.0012647113,0.000045506033],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.010323633,0.0006096371,0.0030759873,0.000840549,0.0004562481,0.00005033792,0.002295201,0.0009874369,0.00038391293],"category_scores_gemma":[0.0020098719,0.0003699494,0.0016699997,0.0007296265,0.0008061279,0.00036424558,0.0005897624,0.003981668,0.00022166703],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034593397,0.00065695355,0.0000044319745,0.0035571773,0.0056304494,0.00006837248,0.002620204,0.000003941468,0.024129506,0.00043207794,0.0051088077,0.9543287],"study_design_scores_gemma":[0.0011310426,0.00065992115,0.00007558834,0.005778887,0.0015630724,0.0020790386,0.0006362237,2.0570619e-7,0.0051733945,0.0001117689,0.982448,0.0003428998],"about_ca_topic_score_codex":0.0002305201,"about_ca_topic_score_gemma":0.0000038999538,"teacher_disagreement_score":0.97733915,"about_ca_system_score_codex":0.00032176846,"about_ca_system_score_gemma":0.0026849217,"threshold_uncertainty_score":0.99987525},"labels":[],"label_agreement":null},{"id":"W2034925671","doi":"10.1097/00003246-200005000-00045","title":"Coupled plasma filtration-adsorption in a rabbit model of endotoxic shock","year":2000,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":339,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bell (Canada)","funders":"","keywords":"Medicine; Septic shock; Extracorporeal; Lipopolysaccharide; Hemofiltration; Proinflammatory cytokine; Anesthesia; Sepsis; Internal medicine; Inflammation","score_opus":0.01698920583428542,"score_gpt":0.2720366504253212,"score_spread":0.2550474445910358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2034925671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99225456,0.0018395279,0.0006208183,0.0010741226,0.00015232095,0.00017828296,0.000007309204,0.000027746339,0.0038453438],"genre_scores_gemma":[0.99871767,0.000094817304,0.000045328306,0.0001312895,0.000032038246,0.000025433568,0.00017014857,0.0000079498195,0.0007753118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990661,0.00012227481,0.00039673815,0.0001553687,0.000055407403,0.00020408309],"domain_scores_gemma":[0.99938524,0.00028865042,0.000026657808,0.00016899666,0.00011252849,0.000017951583],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018989561,0.00010604989,0.0002649896,0.00011911548,0.000034913697,0.0000023371163,0.00008848212,0.00017663899,0.0036213028],"category_scores_gemma":[0.00046222244,0.00008914552,0.000040122875,0.000117673655,0.0003019959,0.0000877204,0.000009208444,0.00019565866,0.0001224496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052946596,0.000047118356,0.00015408412,0.00008329506,0.000009858833,0.000003578431,0.0018182963,0.00032912966,0.9873781,0.003080012,0.000273039,0.006294015],"study_design_scores_gemma":[0.0069489246,0.0012116205,0.0019537583,0.00048949895,0.00011752104,0.00007542664,0.0035650765,0.024408411,0.9570207,0.0014260452,0.0024601838,0.0003228606],"about_ca_topic_score_codex":0.00005787669,"about_ca_topic_score_gemma":0.000019609355,"teacher_disagreement_score":0.030357435,"about_ca_system_score_codex":0.000039038852,"about_ca_system_score_gemma":0.000059034603,"threshold_uncertainty_score":0.99728954},"labels":[],"label_agreement":null},{"id":"W2035454589","doi":"10.1073/pnas.0811273106","title":"Functional and genetic evidence that the Mal/TIRAP allele variant 180L has been selected by providing protection against septic shock","year":2009,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"European Social Fund; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Eusko Jaurlaritza; Euskal Herriko Unibertsitatea; Science Foundation Ireland; University of Oxford","keywords":"Biology; Immunology; Innate immune system; Allele; TLR2; TLR9; TLR4; Proinflammatory cytokine; Sepsis; Genetics; Immune system; Gene; Inflammation","score_opus":0.05196068671904471,"score_gpt":0.2575916993846951,"score_spread":0.2056310126656504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035454589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879498,0.0016584296,0.000037718215,0.009604107,0.000027965925,0.0004540893,0.000003148337,0.000019283032,0.0002454595],"genre_scores_gemma":[0.9989766,0.0001335811,0.00013516478,0.00028330373,0.000029972867,0.000022840044,9.007007e-7,0.000003024954,0.0004146511],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900645,0.000041461077,0.00027833472,0.00022827878,0.0002710695,0.00017438304],"domain_scores_gemma":[0.99914616,0.00014391248,0.00044453703,0.000012073208,0.00024330214,0.000010008753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010162186,0.00010675926,0.0001256194,0.00011189919,0.0006668139,0.000046855817,0.000381767,0.00013409606,0.000020314654],"category_scores_gemma":[0.00068747596,0.00006344656,0.0000451868,0.00049215707,0.000659614,0.00048630693,0.00006487411,0.00024150447,0.000004517977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008619811,0.000023214445,0.0006059581,0.000018718065,0.000025945441,6.2531273e-9,0.00020914461,0.00003707561,0.992968,0.0010035022,0.0023638585,0.002658328],"study_design_scores_gemma":[0.00025356526,0.00017590461,0.1800468,0.00011989389,0.000024700204,0.00007632631,0.00013754357,0.0006556366,0.81514275,0.0023871653,0.00088154664,0.000098201046],"about_ca_topic_score_codex":0.000007574964,"about_ca_topic_score_gemma":9.7268554e-8,"teacher_disagreement_score":0.17944084,"about_ca_system_score_codex":0.00003637388,"about_ca_system_score_gemma":0.00006797584,"threshold_uncertainty_score":0.5128661},"labels":[],"label_agreement":null},{"id":"W2035682600","doi":"10.1016/j.taap.2005.12.014","title":"The effects of dexamethasone on rat brain cortical nuclear factor kappa B (NF-κB) in endotoxic shock","year":2006,"lang":"en","type":"article","venue":"Toxicology and Applied Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; University of Manitoba","keywords":"P50; Electrophoretic mobility shift assay; Dexamethasone; NF-κB; Lipopolysaccharide; Chemistry; NFKB1; IκBα; Nuclear protein; Blot; Molecular biology; Endocrinology; Internal medicine; Pharmacology; Biology; Transcription factor; Biochemistry; Apoptosis; Medicine","score_opus":0.005575239742664478,"score_gpt":0.24324866561819478,"score_spread":0.2376734258755303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035682600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942752,0.0012363008,0.000013501836,0.0012276877,0.0009414377,0.0007426925,0.000003856716,0.000045776367,0.0015135322],"genre_scores_gemma":[0.99777263,0.0001973419,0.000016625076,0.0010172436,0.00006920827,0.00012725905,0.000017353845,0.00002029306,0.0007620186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99779665,0.00080354733,0.00048579366,0.0003317124,0.0000386256,0.0005436561],"domain_scores_gemma":[0.99519676,0.0044097863,0.000168794,0.00017753773,0.000022362865,0.000024764646],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004248264,0.00023575268,0.00045274664,0.0001581408,0.00030055645,0.000008179454,0.00022301919,0.0005071647,0.00041158256],"category_scores_gemma":[0.00012990173,0.00018173434,0.000060145056,0.00014670173,0.00077881897,0.000038150025,0.000102127255,0.0007023004,0.00017619596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024402752,0.00030072738,0.0002774076,0.000034928064,0.000091932416,0.000014737386,0.00018910559,0.000012674905,0.9666911,0.019860234,0.0051958803,0.004891004],"study_design_scores_gemma":[0.0044812914,0.00074669346,0.01381416,0.000010512325,0.000049135957,0.000037374353,0.00006545989,0.000014278864,0.95253134,0.00056195416,0.027510138,0.00017763722],"about_ca_topic_score_codex":0.000013582552,"about_ca_topic_score_gemma":0.00002137156,"teacher_disagreement_score":0.022314258,"about_ca_system_score_codex":0.000049391834,"about_ca_system_score_gemma":0.00005684046,"threshold_uncertainty_score":0.74109113},"labels":[],"label_agreement":null},{"id":"W2035729149","doi":"10.1172/jci36551","title":"Triggering of TLR7 and TLR8 expressed by human lung cancer cells induces cell survival and chemoresistance","year":2010,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":232,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cancéropôle Ile de France; Institut National Du Cancer; Institute of Cancer Research; Institut National de la Santé et de la Recherche Médicale","keywords":"TLR7; Cancer research; Lung cancer; Biology; Downregulation and upregulation; Immunotherapy; Cell; Immune system; Immunology; Medicine; Pathology; Innate immune system; Toll-like receptor; Gene","score_opus":0.028887337097523405,"score_gpt":0.3334194015012781,"score_spread":0.3045320644037547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2035729149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966668,0.0020626283,0.000025030316,0.0003613367,0.00071164983,0.00007109151,0.000005673418,0.0000046814466,0.00009111942],"genre_scores_gemma":[0.99868655,0.0007317379,0.00016910434,0.000040145016,0.00009695839,0.0000015899221,0.000008349024,0.000007202675,0.00025836818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853265,0.0002370553,0.000961009,0.000110877336,0.00005526685,0.00010314194],"domain_scores_gemma":[0.9982213,0.00046873576,0.0010242889,0.00009289989,0.00015180964,0.000041008425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001381822,0.00009087915,0.00036212834,0.00006248326,0.00007679024,0.000015997142,0.00009552987,0.00025813567,0.000042823754],"category_scores_gemma":[0.00033059742,0.00007527764,0.000061527324,0.000053040345,0.00035334032,0.00022775438,0.000026809395,0.0005283144,0.0000011826462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017062813,0.000033561842,0.006093274,0.000050627652,0.000043636064,6.2942377e-7,0.00019943749,0.0000013128297,0.9906552,0.00008302072,0.0012990728,0.0013696032],"study_design_scores_gemma":[0.001450625,0.00012395348,0.031782873,0.00008495705,0.00005598088,0.0000039404276,0.00006381358,0.000014078239,0.96392024,0.00023492219,0.0021868963,0.00007773619],"about_ca_topic_score_codex":0.000026640715,"about_ca_topic_score_gemma":0.000009565992,"teacher_disagreement_score":0.026734972,"about_ca_system_score_codex":0.0000061404594,"about_ca_system_score_gemma":0.000086157,"threshold_uncertainty_score":0.3069733},"labels":[],"label_agreement":null},{"id":"W2036350098","doi":"10.1016/j.imbio.2007.11.004","title":"The zinc finger protein and transcriptional repressor Gfi1 as a regulator of the innate immune response","year":2008,"lang":"en","type":"article","venue":"Immunobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Clinical Research Institute; Université de Montréal","funders":"Deutsche Forschungsgemeinschaft","keywords":"Zinc finger; Repressor; Biology; Regulator; Tumor necrosis factor alpha; Immune system; Cell biology; Cold-shock domain; Innate immune system; Transcriptional regulation; Cytokine; Immunology; Gene; Transcription factor; Genetics; RNA","score_opus":0.008363750323206133,"score_gpt":0.21071061261877194,"score_spread":0.2023468622955658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036350098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9779532,0.017954586,0.000010362289,0.0027403154,0.000545423,0.0005320106,0.000013486476,0.000030299516,0.00022033985],"genre_scores_gemma":[0.98435694,0.00045022456,0.000017905842,0.00010183452,0.00001848564,0.00008818074,0.000024410796,0.0000163687,0.01492567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971979,0.0015717717,0.00057741406,0.00025908728,0.000046818903,0.00034698917],"domain_scores_gemma":[0.9984605,0.00041800115,0.0002827661,0.00069641974,0.00013189597,0.000010431874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011464293,0.00019105751,0.0002894307,0.00007352801,0.0008570605,0.000009195579,0.00043685548,0.000326789,0.00012599528],"category_scores_gemma":[0.0006789373,0.0001120855,0.00016072158,0.00015146447,0.0016260409,0.000072104696,0.00016517489,0.0003583863,0.000102390775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0069422247,0.00003869472,0.00016509205,0.000005484652,0.00016730979,0.0000023770576,0.0009279783,0.0000015749612,0.9863269,0.004054513,0.0002955766,0.0010723206],"study_design_scores_gemma":[0.0013616045,0.000350409,0.18292075,0.000044289947,0.000021334454,0.00094251573,0.0001222922,0.0000016967996,0.70696074,0.00046556754,0.10666498,0.0001438394],"about_ca_topic_score_codex":0.00011962601,"about_ca_topic_score_gemma":0.0000054805328,"teacher_disagreement_score":0.27936614,"about_ca_system_score_codex":0.000026524816,"about_ca_system_score_gemma":0.00019149705,"threshold_uncertainty_score":0.6591903},"labels":[],"label_agreement":null},{"id":"W2036842751","doi":"10.1038/mi.2009.6","title":"A novel regulatory B-cell population in sheep Peyer's patches spontaneously secretes IL-10 and downregulates TLR9-induced IFNα responses","year":2009,"lang":"en","type":"article","venue":"Mucosal Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"TLR9; Immunology; Biology; Immune system; Toll-Like Receptor 9; Peyer's patch; Innate immune system; Population; Cytokine; CpG Oligodeoxynucleotide; CD11c; Interleukin 10; Peripheral blood mononuclear cell; Cell biology; Medicine; Gene expression","score_opus":0.009394017702472312,"score_gpt":0.22082075976488663,"score_spread":0.21142674206241432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2036842751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921137,0.0055603543,0.000010548527,0.0008808981,0.00039101776,0.00041887915,0.000014881267,0.0001800456,0.00042965522],"genre_scores_gemma":[0.9968163,0.00019830538,0.00015428143,0.00017988237,0.000038780647,0.000024983352,0.00022832694,0.00003273979,0.002326418],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972872,0.0006091313,0.00075111684,0.0005770543,0.000069198686,0.00070629304],"domain_scores_gemma":[0.9986101,0.0004368299,0.0002805438,0.00054492155,0.000097001364,0.000030635867],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006571603,0.00041921524,0.00060864986,0.0005966959,0.00025944438,0.00004357493,0.00028576507,0.0008368951,0.00023094693],"category_scores_gemma":[0.0002904666,0.0004104233,0.00011720043,0.00027511208,0.0002204197,0.00034053967,0.00011148522,0.00054031576,0.00023894779],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031005365,0.00020716165,0.0017498713,0.0000146714465,0.00007938122,0.000048716305,0.0009373479,0.000009380092,0.97995067,0.0006612178,0.000102099904,0.013138959],"study_design_scores_gemma":[0.0034552093,0.0011277228,0.6585475,0.000068243935,0.00004959022,0.0011407564,0.0005149129,0.00003548137,0.33104986,0.0005386303,0.002935092,0.00053695554],"about_ca_topic_score_codex":0.000617372,"about_ca_topic_score_gemma":0.00022274847,"teacher_disagreement_score":0.65679765,"about_ca_system_score_codex":0.00014531307,"about_ca_system_score_gemma":0.000103509454,"threshold_uncertainty_score":0.9998348},"labels":[],"label_agreement":null},{"id":"W2037526511","doi":"10.1046/j.1365-2249.2002.01768.x","title":"CD14-dependent and -independent cytokine and chemokine production by human THP-1 monocytes stimulated by<i>Streptococcus suis</i>capsular type 2","year":2002,"lang":"en","type":"article","venue":"Clinical & Experimental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chemokine; CD14; Immunology; THP1 cell line; Cytokine; Streptococcus suis; Monocyte; Biology; Microbiology; Virology; Immune system; Cell culture; Gene; Genetics","score_opus":0.027727159786413262,"score_gpt":0.3094375973367432,"score_spread":0.28171043755032993,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037526511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9363502,0.06120362,0.000008618386,0.00049758016,0.0009888557,0.00058293634,0.000017000739,0.0001345552,0.00021662493],"genre_scores_gemma":[0.9913087,0.0029917636,0.000013739894,0.00014781136,0.00006762331,0.00005781013,0.00034897556,0.00003948329,0.005024099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99715847,0.0005243044,0.00094672333,0.0007887101,0.00007119109,0.00051061733],"domain_scores_gemma":[0.99890727,0.00016342233,0.000304896,0.0004797797,0.00008937999,0.000055231514],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004432138,0.0003824324,0.000631414,0.00010470238,0.00037119773,0.000040695126,0.0002306228,0.00068687135,0.0012449176],"category_scores_gemma":[0.00019378154,0.00035752117,0.00009543686,0.00012785626,0.0008405705,0.00028228515,0.0003140536,0.0006489506,0.0003305893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005108752,0.0007792772,0.0022954922,0.0000074249533,0.00036979874,0.000008335447,0.00030380485,7.0610076e-7,0.98330724,0.00007966531,0.00837183,0.003965561],"study_design_scores_gemma":[0.004085815,0.0018297426,0.005274133,0.000024605974,0.00006784706,0.00011529265,0.00032102125,0.00001614688,0.95775115,0.0000467649,0.030081064,0.00038640143],"about_ca_topic_score_codex":0.0001103321,"about_ca_topic_score_gemma":0.0000029392688,"teacher_disagreement_score":0.058211856,"about_ca_system_score_codex":0.00008114489,"about_ca_system_score_gemma":0.000014602033,"threshold_uncertainty_score":0.9998877},"labels":[],"label_agreement":null},{"id":"W2037565352","doi":"10.1111/j.1462-5822.2007.01071.x","title":"MyD88 signalling plays a critical role in host defence by controlling pathogen burden and promoting epithelial cell homeostasis during Citrobacter rodentium-induced colitis","year":2007,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":195,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"University of British Columbia","keywords":"Citrobacter rodentium; Biology; Immunology; Colitis; Innate immune system; Immune system; Microbiology; Pathogen; Citrobacter; Enterobacteriaceae","score_opus":0.005010474199163333,"score_gpt":0.20153345721214955,"score_spread":0.1965229830129862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037565352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988927,0.009114058,0.00073856296,0.00014027608,0.00034061106,0.00048797327,0.0000944082,0.000063119514,0.00009397238],"genre_scores_gemma":[0.9989923,0.00014940153,0.0001211452,0.000057636953,0.00011353786,0.000024352325,0.00032677338,0.000041037572,0.00017378408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99688005,0.0005301775,0.0008089223,0.000651248,0.000032954347,0.0010966386],"domain_scores_gemma":[0.9988813,0.0005044721,0.00020783763,0.00024318582,0.000104097235,0.000059125967],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011663834,0.0003587265,0.00058105204,0.00029479014,0.00033464291,0.00004849649,0.00026174638,0.00068864465,0.00016907387],"category_scores_gemma":[0.00020532844,0.00037121162,0.00012012175,0.00016954816,0.00025884938,0.00016950897,0.00016817592,0.000616403,0.00016308716],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007155936,0.0000659296,0.0007342006,0.00007426143,0.00005400995,0.00008936855,0.0016421416,0.000003318355,0.9957393,0.00003293207,0.000007625834,0.00084135187],"study_design_scores_gemma":[0.002631746,0.00018864137,0.0013680733,0.00010566763,0.00005060843,0.0002473312,0.00071205426,0.000024387662,0.9929307,0.000031708292,0.0013093037,0.00039978416],"about_ca_topic_score_codex":0.00015662571,"about_ca_topic_score_gemma":0.00003657024,"teacher_disagreement_score":0.0100653125,"about_ca_system_score_codex":0.000109529996,"about_ca_system_score_gemma":0.000059026475,"threshold_uncertainty_score":0.999874},"labels":[],"label_agreement":null},{"id":"W2037594336","doi":"10.1021/tx400232s","title":"Identification of Danger Signals in Nevirapine-Induced Skin Rash","year":2013,"lang":"en","type":"article","venue":"Chemical Research in Toxicology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Inflammasome; Chemistry; Rash; Reactive intermediate; Biochemistry; Medicine","score_opus":0.05960930000898609,"score_gpt":0.3677804619482003,"score_spread":0.30817116193921423,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037594336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99658847,0.0005373651,0.000009078988,0.001501972,0.00011299928,0.0005489219,0.0000013243387,0.000011820708,0.0006880431],"genre_scores_gemma":[0.9990338,0.00007986154,0.000014056511,0.000042515116,0.000019845891,0.00026853255,0.000032060994,0.000010287808,0.00049904943],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748373,0.00092195027,0.0006784818,0.00028310236,0.00008436124,0.00054835406],"domain_scores_gemma":[0.99841994,0.00095928845,0.00010210039,0.00030571685,0.00018900534,0.000023923947],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0019402305,0.000102595244,0.0002934641,0.00058830366,0.000033379012,0.000012220058,0.00035547934,0.0005015292,0.0010582072],"category_scores_gemma":[0.0013872397,0.000097006036,0.000049928465,0.0005946489,0.00033115927,0.00017371263,0.00015383262,0.0007070196,0.0010734999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013059683,0.00020780433,0.0005284058,0.000029696763,0.000014114232,0.0000033417746,0.0002626105,0.0000032003475,0.9836693,0.0004149638,0.0011935991,0.013542375],"study_design_scores_gemma":[0.0009187125,0.00009712996,0.01474031,0.00003528023,0.0000015620079,0.0000064917567,0.00017311379,0.00006867733,0.9815754,0.0015492671,0.00075046456,0.00008353815],"about_ca_topic_score_codex":0.00021288871,"about_ca_topic_score_gemma":0.000018455894,"teacher_disagreement_score":0.014211903,"about_ca_system_score_codex":0.0001426261,"about_ca_system_score_gemma":0.00012093487,"threshold_uncertainty_score":0.999855},"labels":[],"label_agreement":null},{"id":"W2037802239","doi":"10.1111/j.1365-2222.2006.02370.x","title":"Signal transducer and activator of transcription 6 down‐regulates toll‐like receptor‐4 expression of a monocytic cell line","year":2006,"lang":"en","type":"article","venue":"Clinical & Experimental Allergy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada)","funders":"","keywords":"TLR4; Toll-like receptor; STAT protein; Molecular biology; Transfection; Biology; Receptor; STAT6; Lipopolysaccharide; Transcription factor; Signal transduction; Cell biology; STAT3; Cell culture; Innate immune system; Immunology; Interleukin 4; Cytokine; Biochemistry; Gene","score_opus":0.01789732447604036,"score_gpt":0.279606648797725,"score_spread":0.26170932432168464,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037802239","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912032,0.0076918383,0.00013623758,0.00006487261,0.00032633316,0.00020246283,0.000010324869,0.000025414198,0.00033933957],"genre_scores_gemma":[0.99836236,0.00027813966,0.00020926118,0.000027341212,0.000046675515,0.000016852215,0.00011245728,0.00001595833,0.0009309597],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832153,0.00029143694,0.00087258324,0.00027082057,0.00005397777,0.00018962559],"domain_scores_gemma":[0.9993204,0.0001881327,0.00024776612,0.00017781439,0.000041760246,0.000024152387],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022170538,0.00017457046,0.0004298465,0.00006755264,0.000063961845,0.0000050347053,0.00011586184,0.00033268327,0.00097356556],"category_scores_gemma":[0.000009251482,0.00014828549,0.00023786172,0.00006065225,0.00033607308,0.00014029787,0.000034054476,0.00016451071,0.000023789262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024298579,0.0008470762,0.000067791516,0.000024037095,0.0000634325,6.562137e-7,0.0004312408,0.0000148547015,0.9938812,0.0000992487,0.000636766,0.0015037992],"study_design_scores_gemma":[0.0030047537,0.00096136966,0.0013493515,0.00007249481,0.000019353818,0.0000044494604,0.00039510016,0.000018270588,0.9865954,0.00004802009,0.007384986,0.00014643744],"about_ca_topic_score_codex":0.00008804402,"about_ca_topic_score_gemma":0.000002570276,"teacher_disagreement_score":0.007413699,"about_ca_system_score_codex":0.000021437301,"about_ca_system_score_gemma":0.000034461806,"threshold_uncertainty_score":0.9999397},"labels":[],"label_agreement":null},{"id":"W2037863616","doi":"10.1111/j.1365-2567.2004.01923.x","title":"Enteroaggregative <i>Escherichia coli</i> flagellin‐induced interleukin‐8 secretion requires Toll‐like receptor 5‐dependent p38 MAP kinase activation","year":2004,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Vancouver Hospital and Health Sciences Centre","funders":"","keywords":"TLR5; Flagellin; Biology; Secretion; Microbiology; MAPK/ERK pathway; p38 mitogen-activated protein kinases; Enteroaggregative Escherichia coli; Toll-like receptor; Interleukin 8; Kinase; Cell biology; TLR2; Signal transduction; Receptor; Escherichia coli; Immune system; TLR4; Cytokine; Innate immune system; Immunology; Enterobacteriaceae; Biochemistry; Gene","score_opus":0.012073798268026046,"score_gpt":0.233588489342345,"score_spread":0.22151469107431895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2037863616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886559,0.0016651918,0.0022513515,0.0019394468,0.0037883855,0.0006945531,0.000013729982,0.00026509707,0.00072632387],"genre_scores_gemma":[0.99508905,0.00030543542,0.00019586783,0.00055618945,0.000115422474,0.00015031912,0.0007113259,0.000052154297,0.0028242068],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971207,0.00072550867,0.0007750925,0.0006014985,0.00009239682,0.00068482506],"domain_scores_gemma":[0.99846053,0.000169899,0.0005000104,0.0006212798,0.00021574517,0.000032536176],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00042138656,0.00043914875,0.00051546143,0.00033134123,0.00038721965,0.00004859758,0.0004521604,0.00081078266,0.000881902],"category_scores_gemma":[0.00017196825,0.00043199543,0.00018958567,0.00024501298,0.0003253819,0.00055345625,0.00018103477,0.0007935643,0.0035984062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022542488,0.0002197757,0.00003215609,0.000021575543,0.00039632464,0.000012168261,0.0024982714,0.000022757857,0.9867091,0.0015666244,0.0007921798,0.0054748068],"study_design_scores_gemma":[0.0038526899,0.0009764808,0.0009298947,0.00018001327,0.000047803744,0.000054479,0.0012675304,0.000003560137,0.94798034,0.0007140079,0.04357985,0.0004133343],"about_ca_topic_score_codex":0.00047277263,"about_ca_topic_score_gemma":0.00005184902,"teacher_disagreement_score":0.042787667,"about_ca_system_score_codex":0.00050445634,"about_ca_system_score_gemma":0.00021765791,"threshold_uncertainty_score":0.9998132},"labels":[],"label_agreement":null},{"id":"W2038143978","doi":"10.1038/ni1412","title":"Nod-like proteins in immunity, inflammation and disease","year":2006,"lang":"en","type":"review","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":884,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"NOD1; NOD2; Nod; Innate immune system; NALP3; Biology; Inflammation; Receptor; Immune system; Immunology; Intracellular; Pattern recognition receptor; Cell biology; Immune receptor; Gene; Genetics","score_opus":0.009986664907807785,"score_gpt":0.276450151039046,"score_spread":0.2664634861312382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2038143978","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00146593,0.99465626,0.0000095129535,0.00020204743,0.0012351102,0.0016576455,0.00004168126,0.00011920667,0.0006125764],"genre_scores_gemma":[0.0008394627,0.9928833,0.000032216238,0.000038566013,0.00008797953,0.00040202652,0.0030548088,0.00007154817,0.0025900768],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961419,0.0014703,0.0011042544,0.00059390307,0.00006181081,0.0006278388],"domain_scores_gemma":[0.9980809,0.0003785361,0.00060650025,0.00080686307,0.00009650509,0.000030704516],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0005557395,0.00067316124,0.0016570647,0.0010642046,0.00021478483,0.000041648145,0.00053104723,0.0035330667,0.00013497598],"category_scores_gemma":[0.00048453937,0.0005843714,0.00030798948,0.00049012876,0.0003708836,0.00023644135,0.00036387457,0.0037300878,0.00053806376],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032713078,0.00012302362,0.000024271732,0.0035962907,0.0004431802,0.00006520677,0.00010071117,4.7589512e-7,0.002041859,0.0029719207,0.0013092416,0.9889967],"study_design_scores_gemma":[0.0009351902,0.00008744795,0.0006319593,0.0030642604,0.000305477,0.00018322337,0.000015500384,6.1676155e-7,0.0002018118,0.00034593377,0.9936952,0.0005333765],"about_ca_topic_score_codex":0.00014230043,"about_ca_topic_score_gemma":0.00006813483,"teacher_disagreement_score":0.992386,"about_ca_system_score_codex":0.00021546186,"about_ca_system_score_gemma":0.0005646383,"threshold_uncertainty_score":0.9996608},"labels":[],"label_agreement":null},{"id":"W2039194112","doi":"10.1016/j.molimm.2008.09.007","title":"Cigarette smoke attenuation of poly I:C-induced innate antiviral responses in human PBMC is mainly due to inhibition of IFN-β production","year":2008,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Philip Morris International; McMaster University; University of Kentucky","keywords":"Peripheral blood mononuclear cell; Innate immune system; Immunology; Chemistry; Immune system; Biology; In vitro; Biochemistry","score_opus":0.017496373333175292,"score_gpt":0.2530583786274595,"score_spread":0.2355620052942842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039194112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691576,0.0008938703,0.00020596008,0.0009229578,0.00034791016,0.00047198744,0.000009658745,0.000036821668,0.00019506982],"genre_scores_gemma":[0.9992115,0.000044365363,0.000057311037,0.0001584146,0.000011804581,0.000042046133,0.00013135618,0.000024654135,0.00031855583],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975601,0.0008438557,0.0007877975,0.0003715341,0.00008213667,0.000354567],"domain_scores_gemma":[0.9988636,0.000055772285,0.0003700749,0.00048760726,0.00021279095,0.000010189187],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005340377,0.00021577108,0.0004773147,0.0008708183,0.00012999361,0.0000036113347,0.00017003025,0.00041098316,0.00006792459],"category_scores_gemma":[0.0003287994,0.00023578876,0.000117584794,0.0005414924,0.00027827063,0.0001668655,0.000103055376,0.0003185436,0.00003838496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013756738,0.00014733148,0.0011190176,0.000019812589,0.00013610168,0.000045237004,0.0019571644,0.000004314329,0.9911217,0.0007467362,0.00008385601,0.0032430158],"study_design_scores_gemma":[0.0011218279,0.00063174893,0.13895719,0.000082256505,0.000023546789,0.00015169485,0.00015620857,0.0000011204486,0.8583383,0.00016614707,0.0001950997,0.00017486673],"about_ca_topic_score_codex":0.00033661933,"about_ca_topic_score_gemma":0.000023722492,"teacher_disagreement_score":0.13783817,"about_ca_system_score_codex":0.00008007454,"about_ca_system_score_gemma":0.00012201272,"threshold_uncertainty_score":0.96151865},"labels":[],"label_agreement":null},{"id":"W2039253450","doi":"10.1016/s1074-7613(03)00141-9","title":"Identifying the MAGUK Protein Carma-1 as a Central Regulator of Humoral Immune Responses and Atopy by Genome-Wide Mouse Mutagenesis","year":2003,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":297,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Biology; NFAT; Immune system; Regulator; Immunoreceptor tyrosine-based activation motif; Cell biology; Mutagenesis; Signal transduction; Effector; Antigen; Mutant; T-cell receptor; Immunology; T cell; Genetics; Transcription factor; Gene","score_opus":0.01193747128779084,"score_gpt":0.2353824620022992,"score_spread":0.22344499071450835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039253450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98392427,0.014823661,0.00005493741,0.00014948097,0.00014675385,0.0005530896,0.000025348569,0.000047689176,0.000274799],"genre_scores_gemma":[0.9926804,0.00020331264,0.000056826055,0.00007470625,0.000006538097,0.000045966197,0.000057727873,0.000024569224,0.0068499553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969309,0.00184616,0.000516741,0.00020290804,0.00006463962,0.00043866655],"domain_scores_gemma":[0.99869305,0.00026540604,0.00026733783,0.0006472493,0.000096299846,0.000030644762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010562468,0.00022338488,0.00033413505,0.00010899096,0.0005684116,0.00003901589,0.00031572318,0.00020426945,0.00041567904],"category_scores_gemma":[0.00077893265,0.00017868477,0.00012482036,0.00018344581,0.0004694961,0.00019277068,0.00012637804,0.00036927304,0.00007305142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008048177,0.00007631376,0.002252126,0.000035209407,0.00016147419,0.0000030525841,0.0019026424,0.0000011793816,0.9936037,0.0005857994,0.00014249343,0.0004311899],"study_design_scores_gemma":[0.000986943,0.00013823822,0.043491613,0.00003062241,0.00004814949,0.00006483991,0.0018190608,6.0424503e-7,0.9392224,0.0001555785,0.013852023,0.00018995511],"about_ca_topic_score_codex":0.00076099444,"about_ca_topic_score_gemma":0.000011605472,"teacher_disagreement_score":0.05438133,"about_ca_system_score_codex":0.000054539378,"about_ca_system_score_gemma":0.00015538788,"threshold_uncertainty_score":0.7286554},"labels":[],"label_agreement":null},{"id":"W2039582116","doi":"10.1016/s0165-5728(99)00174-5","title":"Superantigen presenting capacity of human astrocytes","year":2000,"lang":"en","type":"article","venue":"Journal of Neuroimmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute; McGill University; Montreal Neurological Institute and Hospital","funders":"Medical Research Council Canada; Multiple Sclerosis Society of Canada","keywords":"Superantigen; Enterotoxin; Biology; Immune system; Toxin; MHC class II; Cell biology; Immunology; T cell; Microbiology; Biochemistry; Gene","score_opus":0.020966413151494053,"score_gpt":0.2474675478302091,"score_spread":0.22650113467871505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039582116","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967775,0.0015090271,0.000009739071,0.00017953693,0.00037884124,0.00006813191,0.000002005776,0.000012734144,0.0010625055],"genre_scores_gemma":[0.99837714,0.00031254964,0.000052043284,0.00003031914,0.00003949747,8.9931e-7,0.000005063076,0.000011622982,0.0011708394],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983484,0.0004544776,0.00079033966,0.00010466966,0.00004682188,0.00025525832],"domain_scores_gemma":[0.99900407,0.00014981795,0.00044583456,0.00021454845,0.00017526747,0.000010483856],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003367052,0.00012621861,0.00042019648,0.00022006803,0.00012916749,0.000007751084,0.00032270246,0.0001770553,0.001952366],"category_scores_gemma":[0.00011270925,0.000108799984,0.00019023055,0.0001105077,0.00026218858,0.00021378593,0.00003477311,0.0004637486,0.00010914759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039003565,0.000100861835,0.002028169,0.000010278631,0.0001850616,0.000014424729,0.000503553,0.000014242944,0.9919354,0.00017205189,0.0002840526,0.004361868],"study_design_scores_gemma":[0.0014626264,0.00090051896,0.2352114,0.00003807313,0.000053221513,0.001279391,0.000109473345,0.0000016146745,0.7410476,0.00011014125,0.019684585,0.0001013576],"about_ca_topic_score_codex":0.000032436765,"about_ca_topic_score_gemma":0.000001558894,"teacher_disagreement_score":0.2508878,"about_ca_system_score_codex":0.000015794043,"about_ca_system_score_gemma":0.00004697632,"threshold_uncertainty_score":0.99895996},"labels":[],"label_agreement":null},{"id":"W2039657697","doi":"10.1016/j.immuni.2006.03.020","title":"Human 6-Sulfo LacNAc-Expressing Dendritic Cells Are Principal Producers of Early Interleukin-12 and Are Controlled by Erythrocytes","year":2006,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":177,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"Technische Universität Dresden","keywords":"Biology; TLR4; Immune system; Ligand (biochemistry); CD40; Immunology; In vitro; Cell biology; Receptor; Biochemistry; Cytotoxic T cell","score_opus":0.009874913081243792,"score_gpt":0.23046181924516315,"score_spread":0.22058690616391935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039657697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99424684,0.0041562617,0.000020226069,0.00007147579,0.0002146648,0.000432812,0.00002318985,0.000059091646,0.00077545654],"genre_scores_gemma":[0.9967938,0.000031629148,0.000022238379,0.00002372509,0.000025607864,0.000030908628,0.000073748146,0.000019318679,0.0029790008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983013,0.0005698973,0.0005381756,0.00022438396,0.00005095993,0.000315273],"domain_scores_gemma":[0.9988205,0.000173536,0.00047514832,0.00039023184,0.00012599677,0.000014627531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004439105,0.00021523377,0.0005489996,0.00012615876,0.0003657012,0.000039496692,0.0002086689,0.0002251663,0.000094352166],"category_scores_gemma":[0.00010739466,0.00019691857,0.00010421272,0.00007248127,0.00037368207,0.00020698964,0.00012034329,0.0003739215,0.000035726032],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000665372,0.00017260747,0.010477906,0.000060160844,0.00013553517,0.0000029490056,0.00047437497,0.0000035477353,0.9865997,0.00007460988,0.0010695226,0.00026376027],"study_design_scores_gemma":[0.0045592804,0.00017979067,0.13417606,0.00018989496,0.0000788342,0.000016709284,0.0006126044,0.000002616471,0.8581728,0.000073955656,0.0017321792,0.0002052949],"about_ca_topic_score_codex":0.0012167516,"about_ca_topic_score_gemma":0.000103662474,"teacher_disagreement_score":0.12842688,"about_ca_system_score_codex":0.000051448165,"about_ca_system_score_gemma":0.00003490505,"threshold_uncertainty_score":0.80301064},"labels":[],"label_agreement":null},{"id":"W2039746230","doi":"10.1186/cc6609","title":"Cecal ligation and perforation, when disrupting proper abscess formation, provides highly reproducible results and has common features with human data","year":2008,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Instituto de Salud Carlos III; Fundação de Amparo à Pesquisa do Estado de São Paulo; Deutscher Akademischer Austauschdienst; Intensive Care Foundation","keywords":"Medicine; Ligation; Sepsis; Perforation; Acute respiratory distress; Lipopolysaccharide; ARDS; Lung; Respiratory distress; Systemic inflammatory response syndrome; Intensive care medicine; Immunology; Anesthesia; Internal medicine","score_opus":0.0642803569885272,"score_gpt":0.3002855579886483,"score_spread":0.23600520100012112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2039746230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918346,0.0033881543,0.000100662015,0.0036279552,0.000060042996,0.00031755038,0.000044465192,0.000064429674,0.0005621471],"genre_scores_gemma":[0.9974455,0.000029706349,0.00025800252,0.0000698639,0.000052980547,0.000019471845,0.0017796982,0.0000110742385,0.00033367702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989477,0.00014831484,0.00028138436,0.0003840765,0.000054432592,0.00018412073],"domain_scores_gemma":[0.99907196,0.00010647808,0.000058905778,0.00047285337,0.00026720588,0.000022604858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027701267,0.00012485629,0.00016077662,0.000056966106,0.0010052446,0.00009782822,0.00012082187,0.00013486338,0.00000840365],"category_scores_gemma":[0.0005345542,0.00009289789,0.0000106843145,0.000055396493,0.0005157245,0.0009137346,0.000122912,0.00020110799,0.00000964373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0061431965,0.0003110922,0.032068845,0.002943889,0.00019530185,0.000098959346,0.13613696,0.000016581907,0.72264224,0.015531249,0.03750919,0.04640251],"study_design_scores_gemma":[0.0062147435,0.0019497458,0.24428278,0.00079865236,0.0002882864,0.002087559,0.017682668,0.00018851671,0.6761719,0.00097612,0.04824808,0.001110935],"about_ca_topic_score_codex":0.00010735707,"about_ca_topic_score_gemma":0.00011138904,"teacher_disagreement_score":0.21221393,"about_ca_system_score_codex":0.000020100431,"about_ca_system_score_gemma":0.000053005788,"threshold_uncertainty_score":0.773163},"labels":[],"label_agreement":null},{"id":"W2040024879","doi":"10.1038/ni945","title":"An essential role for NOD1 in host recognition of bacterial peptidoglycan containing diaminopimelic acid","year":2003,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1313,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"NOD1; Peptidoglycan; Diaminopimelic acid; Biology; Innate immune system; Lipopolysaccharide; Nod; Microbiology; NOD2; Biochemistry; Immune system; Immunology; Cell wall; Gene","score_opus":0.005869289748577775,"score_gpt":0.2424818974964493,"score_spread":0.23661260774787152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040024879","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992575,0.0046145795,0.0001361472,0.000063334635,0.0016306085,0.0004275016,0.000039921066,0.000037743845,0.0004751459],"genre_scores_gemma":[0.99833846,0.00009043429,0.0002660009,0.000054927074,0.000055708093,0.00007623237,0.0010035163,0.00002234291,0.000092400274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982573,0.00054760213,0.0004748001,0.0002915198,0.000027885919,0.00040091187],"domain_scores_gemma":[0.9991035,0.00018875918,0.0002454084,0.00028840173,0.00016286828,0.000011090256],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046176594,0.00019050515,0.0003959857,0.0003072067,0.00010189276,0.000010922295,0.00020078593,0.001152125,0.00045613988],"category_scores_gemma":[0.0004453825,0.00019310327,0.000101394726,0.00015403585,0.0001680543,0.00021654449,0.000023723278,0.0006006824,0.00005980874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029683236,0.00014046178,0.00034227484,0.000012607668,0.000115306204,0.0000016960017,0.00075542735,5.6685445e-7,0.9855944,0.0017512924,0.00004098446,0.008276686],"study_design_scores_gemma":[0.00397721,0.000999899,0.009710339,0.00003602659,0.0000350774,0.000058504316,0.000730061,0.000002712502,0.9718298,0.00044249685,0.011970507,0.00020736757],"about_ca_topic_score_codex":0.000050913888,"about_ca_topic_score_gemma":0.00008708368,"teacher_disagreement_score":0.013764573,"about_ca_system_score_codex":0.000053457028,"about_ca_system_score_gemma":0.00012926983,"threshold_uncertainty_score":0.8886243},"labels":[],"label_agreement":null},{"id":"W2040569805","doi":"10.1016/j.jaci.2007.12.749","title":"PI3K and p38 MAPK Regulate Induction of Mcl-1 and Survival in Glucocorticoid Treated Human Neutrophils","year":2008,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Glucocorticoid; p38 mitogen-activated protein kinases; Apoptosis; Dexamethasone; PI3K/AKT/mTOR pathway; Inflammation; Transrepression; MAPK/ERK pathway; Glucocorticoid receptor; Cell biology; Biology; Immunology; Pharmacology; Signal transduction; Endocrinology; Gene expression; Biochemistry; Gene","score_opus":0.02852579533148623,"score_gpt":0.291365012111375,"score_spread":0.26283921677988875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040569805","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912782,0.0076784776,0.000006426482,0.00037464575,0.00046018176,0.000083703235,9.582739e-7,0.000005891211,0.00011152885],"genre_scores_gemma":[0.9808292,0.018681515,0.000022062675,0.000030971056,0.000036130376,0.0000010183285,0.0000069854473,0.000008725058,0.0003833945],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977629,0.00062375213,0.0012044156,0.00017443395,0.00003466068,0.00019981498],"domain_scores_gemma":[0.9987709,0.00031693414,0.0006217305,0.00014429686,0.00012283807,0.000023312468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000640504,0.00014243527,0.000651328,0.00022999385,0.00010435063,0.000005161876,0.00009330754,0.00048750057,0.000057337147],"category_scores_gemma":[0.00016361364,0.000117681564,0.000091060865,0.00009482188,0.0007648903,0.00017755432,0.00007505105,0.000579612,0.000005080566],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050051305,0.0004156137,0.048484135,0.000018058614,0.0016299457,0.00006712532,0.00056082016,0.0000054589555,0.9291716,0.0017385185,0.00007914705,0.012824431],"study_design_scores_gemma":[0.0055976002,0.0026236463,0.96422654,0.00006898216,0.000055080556,0.0013239272,0.0002642131,0.000003452778,0.023219205,0.00041000766,0.002078698,0.00012862806],"about_ca_topic_score_codex":0.000082335704,"about_ca_topic_score_gemma":0.0000365828,"teacher_disagreement_score":0.9157424,"about_ca_system_score_codex":0.000014645168,"about_ca_system_score_gemma":0.000054454333,"threshold_uncertainty_score":0.47989148},"labels":[],"label_agreement":null},{"id":"W2040733257","doi":"10.1038/nbt1288","title":"An anti-infective peptide that selectively modulates the innate immune response","year":2007,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":399,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Inimex Pharmaceuticals (Canada)","funders":"","keywords":"Innate immune system; Chemokine; Salmonella enterica; Biology; Antimicrobial peptides; Microbiology; Effector; Monocyte; Immune system; Regulator; Immunology; Antimicrobial; Salmonella; Gene; Bacteria; Biochemistry","score_opus":0.005086378552623116,"score_gpt":0.24712723154882757,"score_spread":0.24204085299620445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040733257","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98781425,0.0058122547,0.0010704442,0.0033269767,0.00080818747,0.00045255845,0.000008053145,0.00045268875,0.0002545682],"genre_scores_gemma":[0.9985797,0.00018979108,0.00011535291,0.00036455024,0.000045709374,0.000017419186,0.000058070662,0.000035008874,0.0005944335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777675,0.0006295918,0.00035385316,0.0004927504,0.00006692108,0.0006801345],"domain_scores_gemma":[0.99822146,0.00051328505,0.00024051778,0.0008348367,0.0001709188,0.00001896948],"candidate_categories":["research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0023741259,0.0003102052,0.00034333233,0.00056028645,0.0005229988,0.000025080435,0.00067171885,0.0029592994,0.00007507516],"category_scores_gemma":[0.00072097674,0.00022121199,0.00012752644,0.00065788126,0.00063205394,0.00017519778,0.0001515059,0.002348033,0.00027417656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026224633,0.00008780903,0.0007794749,0.0000033056301,0.00018172922,0.000016863607,0.00035940437,0.000006191149,0.98301196,0.0041640187,0.00041247872,0.008354279],"study_design_scores_gemma":[0.0006566694,0.00043851044,0.21132354,0.000011964418,0.000024513096,0.0002538259,0.00038976228,0.000007244977,0.7417457,0.0004026391,0.044537883,0.00020771447],"about_ca_topic_score_codex":0.00006231297,"about_ca_topic_score_gemma":0.00003154737,"teacher_disagreement_score":0.24126625,"about_ca_system_score_codex":0.00011739627,"about_ca_system_score_gemma":0.00009601827,"threshold_uncertainty_score":0.99995357},"labels":[],"label_agreement":null},{"id":"W2040780231","doi":"10.1016/j.cyto.2009.07.168","title":"CysLT1 expression and function are downregulated during dendritic cell maturation with zymosan: Role of IL-10 and prostaglandins","year":2009,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Zymosan; Function (biology); Cell biology; Expression (computer science); Dendritic cell; Chemistry; Biology; Immunology; Computer science; Biochemistry; Immune system","score_opus":0.002673886188383063,"score_gpt":0.17092515218085577,"score_spread":0.1682512659924727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040780231","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975524,0.0017852361,0.00006080789,0.00007851431,0.000034069257,0.00018181336,0.000008792096,0.000035559504,0.0002628366],"genre_scores_gemma":[0.99893534,0.00006704523,0.00004552932,0.000010907186,0.000014929523,0.0000055140513,0.00014345247,0.0000064722385,0.00077082583],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99947417,0.00005803003,0.0001635351,0.00014952994,0.000026862594,0.00012787267],"domain_scores_gemma":[0.9996785,0.000019088071,0.00012358812,0.000113373055,0.000053514195,0.000011950724],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006129675,0.000104738974,0.00014950061,0.00008532251,0.00012119091,0.000012942292,0.000027685202,0.00012883666,0.000050357798],"category_scores_gemma":[0.000011515077,0.00008024625,0.0000139653575,0.00007071972,0.00005506123,0.00017203572,0.000016112988,0.00009036876,0.00001143252],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002369488,0.00003666554,0.00086487154,0.00003621839,0.000012650088,0.0000016506577,0.00025269695,0.000008386314,0.99493665,0.00004623671,0.000047372152,0.0013871284],"study_design_scores_gemma":[0.0015478731,0.00036464602,0.19709139,0.00009911648,0.000027094826,0.00006134489,0.00021320583,0.000012748676,0.7993747,0.00006026474,0.0010628053,0.00008481829],"about_ca_topic_score_codex":0.000003995229,"about_ca_topic_score_gemma":0.0000022701502,"teacher_disagreement_score":0.19622652,"about_ca_system_score_codex":0.000011192088,"about_ca_system_score_gemma":0.000010033955,"threshold_uncertainty_score":0.32723475},"labels":[],"label_agreement":null},{"id":"W2040822794","doi":"10.1615/critrevimmunol.v29.i4.50","title":"Tyrosine Phosphorylation in Immune Cells: Direct and Indirect Effects on Toll-Like Receptor-Induced Proinflammatory Cytokine Production","year":2009,"lang":"en","type":"review","venue":"Critical Reviews in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Protein tyrosine phosphatase; Tyrosine phosphorylation; Receptor tyrosine kinase; Proto-oncogene tyrosine-protein kinase Src; Cell biology; JAK-STAT signaling pathway; Phosphorylation; ROR1; Signal transduction; Tyrosine kinase; Biology; Proinflammatory cytokine; SH2 domain; Platelet-derived growth factor receptor; Cancer research; Chemistry; Biochemistry; Receptor; Immunology; Inflammation","score_opus":0.026181326849027447,"score_gpt":0.30506512054194573,"score_spread":0.27888379369291827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2040822794","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00408774,0.98800814,0.0000025515988,0.00018951572,0.0032789458,0.0038113669,0.00000758021,0.000106654035,0.00050752686],"genre_scores_gemma":[0.0017864554,0.9959378,0.00006798669,0.000072619216,0.00012775532,0.0010105398,0.00035068518,0.00008579212,0.00056037144],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99021745,0.0048627,0.0026050587,0.0012404938,0.00009646766,0.0009778256],"domain_scores_gemma":[0.9964718,0.0017514501,0.00063537125,0.0010111046,0.00008907636,0.00004119039],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0027066157,0.0010180837,0.004463821,0.0012288585,0.00018791783,0.000040162868,0.0004491276,0.0018428854,0.00011074732],"category_scores_gemma":[0.004565203,0.0008679131,0.0004531656,0.0008889008,0.00036679147,0.00027541604,0.00016925608,0.0022000456,0.0012307026],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002925029,0.0002544648,0.0000027243789,0.0064713773,0.00009901007,0.00003282046,0.0001172117,1.4143801e-7,0.062228106,0.0004373023,0.00039937723,0.92966497],"study_design_scores_gemma":[0.0008720583,0.00079020613,0.00018744581,0.034402706,0.0002805739,0.0001561281,0.000012938684,3.4122638e-7,0.05462669,0.0000766269,0.90782446,0.00076980755],"about_ca_topic_score_codex":0.00002425962,"about_ca_topic_score_gemma":0.0000146654265,"teacher_disagreement_score":0.9288952,"about_ca_system_score_codex":0.00059416366,"about_ca_system_score_gemma":0.00026207947,"threshold_uncertainty_score":0.99954695},"labels":[],"label_agreement":null},{"id":"W2041234658","doi":"10.1016/j.cellsig.2008.12.001","title":"Distinct intracellular signaling pathways control the synthesis of IL-8 and RANTES in TLR1/TLR2, TLR3 or NOD1 activated human airway epithelial cells","year":2008,"lang":"en","type":"article","venue":"Cellular Signalling","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"TLR3; Cell biology; MAPK/ERK pathway; TLR2; NOD1; Kinase; p38 mitogen-activated protein kinases; Signal transduction; Biology; Toll-like receptor; TLR4; NOD2; Receptor; Chemistry; Innate immune system; Biochemistry","score_opus":0.014839497151192633,"score_gpt":0.19950166356390953,"score_spread":0.1846621664127169,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041234658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99315596,0.0021287543,0.0038329444,0.0000905328,0.00016133163,0.00046733473,0.000028383904,0.000049111244,0.000085674226],"genre_scores_gemma":[0.9993419,0.0001573746,0.000042962154,0.00002665084,0.000055902634,0.00003646499,0.000039925904,0.000036164914,0.0002626671],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975527,0.00077440526,0.00077527115,0.00035518518,0.000090548245,0.00045191203],"domain_scores_gemma":[0.9977736,0.0014512717,0.00036085365,0.00029183697,0.000095296324,0.00002714402],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010502159,0.00030645766,0.0005865359,0.00024331626,0.0005140325,0.00002128863,0.00030802208,0.0003038883,0.00034083208],"category_scores_gemma":[0.00023740192,0.00021328886,0.00014903616,0.00026350145,0.00043155023,0.00014011552,0.000060881524,0.0004556282,0.000045820376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009681531,0.00011568207,0.000333934,0.000058559493,0.00014792007,0.000071628696,0.0014990523,0.00019699465,0.9953681,0.00019206908,0.000014197346,0.0010337034],"study_design_scores_gemma":[0.0017383065,0.000168411,0.00023598607,0.00015417795,0.000087483124,0.000029501796,0.00041078767,0.00032108134,0.9956411,0.0000613873,0.00088307436,0.00026868616],"about_ca_topic_score_codex":0.00010092919,"about_ca_topic_score_gemma":0.000008810739,"teacher_disagreement_score":0.006185954,"about_ca_system_score_codex":0.000037278845,"about_ca_system_score_gemma":0.0000879351,"threshold_uncertainty_score":0.8697667},"labels":[],"label_agreement":null},{"id":"W2041352944","doi":"10.1016/j.cellimm.2009.10.007","title":"Role of TLR2- and TLR4-mediated signaling in Mycobacterium tuberculosis-induced macrophage death","year":2009,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"TLR4; TLR2; Apoptosis; Biology; Macrophage; p38 mitogen-activated protein kinases; Necrosis; Signal transduction; Programmed cell death; Toll-like receptor; Mycobacterium tuberculosis; Tuberculosis; MAPK/ERK pathway; Tumor necrosis factor alpha; Cell biology; Microbiology; Immunology; Innate immune system; Immune system; Medicine; Pathology; Genetics","score_opus":0.006176385280084932,"score_gpt":0.20344819616635712,"score_spread":0.1972718108862722,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041352944","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9809318,0.017820014,0.000028612614,0.0001841631,0.00022841619,0.00023157222,0.0000048847987,0.000048194794,0.00052233814],"genre_scores_gemma":[0.9990798,0.0004377377,0.000046486133,0.00006693872,0.000015243556,0.000010006566,0.00016730263,0.000015610454,0.00016082538],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998245,0.00042579224,0.000555139,0.00029829802,0.00003194516,0.0004438385],"domain_scores_gemma":[0.9992826,0.0001437458,0.00018114924,0.00032130737,0.000054844648,0.000016379292],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034415166,0.00022419027,0.00045663104,0.00032886883,0.000085255684,0.000010051043,0.00019273651,0.00052847934,0.0002269363],"category_scores_gemma":[0.00010812884,0.0002218263,0.00007890702,0.00020355693,0.00012374831,0.0001271539,0.000069919166,0.00040450296,0.00014979861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004384552,0.00010736876,0.0008725626,0.0000116966585,0.00009336089,0.000015657499,0.00069634797,0.0000024577203,0.9912368,0.0010104722,0.0000058744936,0.0055089225],"study_design_scores_gemma":[0.0014857528,0.00043832196,0.05801402,0.000044528908,0.000029683782,0.000060592425,0.00028226763,0.000024158826,0.9376628,0.00035905896,0.0014021872,0.00019664482],"about_ca_topic_score_codex":0.00013047377,"about_ca_topic_score_gemma":0.0000050211615,"teacher_disagreement_score":0.057141457,"about_ca_system_score_codex":0.00004465604,"about_ca_system_score_gemma":0.000053255997,"threshold_uncertainty_score":0.9045814},"labels":[],"label_agreement":null},{"id":"W2041478559","doi":"10.1074/jbc.m706884200","title":"Secretory Leucocyte Protease Inhibitor Inhibits Interferon-γ-induced Cathepsin S Expression","year":2007,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Science Foundation Ireland; Health Research Board","keywords":"Cathepsin S; Protease; Protease inhibitor (pharmacology); Interferon; Chemistry; Cathepsin; Cell biology; Biology; Virology; Enzyme; Biochemistry; Virus","score_opus":0.022543960721157972,"score_gpt":0.2556478060043038,"score_spread":0.23310384528314584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041478559","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99729913,0.00092087017,0.00012856604,0.00008704625,0.0005814272,0.000109108194,0.0000025190627,0.000025340383,0.0008459596],"genre_scores_gemma":[0.99884915,0.000024829575,0.00009132878,0.000065395696,0.00024118081,0.0000022205795,0.000011419533,0.000009437199,0.00070504186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985757,0.00013597161,0.0007306862,0.000174993,0.00006953544,0.00031310518],"domain_scores_gemma":[0.9988809,0.0001016201,0.00060083007,0.00018757337,0.00016850769,0.00006057083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081161596,0.00018754211,0.00032287423,0.0000579632,0.00010020554,0.00001096916,0.00027673465,0.0006433136,0.00045921447],"category_scores_gemma":[0.0005442224,0.00012604517,0.0002398354,0.00010227561,0.00012111133,0.00011984143,0.00013177212,0.0007430695,0.000051643638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016903249,0.00013133734,0.00076145376,0.000024454288,0.00003074835,0.000023858494,0.0000994224,4.1434708e-7,0.9943279,0.0000025321153,0.00055375637,0.002353771],"study_design_scores_gemma":[0.0011370978,0.00031131247,0.0026265886,0.00024714126,0.000011639752,0.00040154267,0.00015588499,2.4435158e-7,0.9882113,0.0000379638,0.006702248,0.000157081],"about_ca_topic_score_codex":0.000001887383,"about_ca_topic_score_gemma":1.8543066e-7,"teacher_disagreement_score":0.0061484915,"about_ca_system_score_codex":0.00013642728,"about_ca_system_score_gemma":0.000119164375,"threshold_uncertainty_score":0.51399726},"labels":[],"label_agreement":null},{"id":"W2041561300","doi":"10.1016/j.cyto.2008.04.007","title":"Pro-inflammatory disequilibrium of the IL-1β/IL-1ra ratio in an experimental model of perinatal brain damages induced by lipopolysaccharide and hypoxia–ischemia","year":2008,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Lipopolysaccharide; Downregulation and upregulation; Inflammation; Brain damage; Agonist; Receptor antagonist; Interleukin 1 receptor antagonist; Receptor; Hypoxia (environmental); Antagonist; Interleukin; Neuroprotection; Medicine; Immunology; Endocrinology; Pharmacology; Cytokine; Internal medicine; Chemistry; Biochemistry","score_opus":0.017905568128174846,"score_gpt":0.2429658000319225,"score_spread":0.22506023190374766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2041561300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985476,0.00070981466,0.00002063601,0.00017976119,0.00008197068,0.00028879696,0.00006826241,0.000019886285,0.00008324525],"genre_scores_gemma":[0.99928266,0.000022221622,0.00003808909,0.000036721,0.000012777542,0.000028772116,0.000060908234,0.00001661628,0.0005012543],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998939,0.000191405,0.0004056546,0.0002091721,0.00005677165,0.00019803824],"domain_scores_gemma":[0.99935603,0.00006284465,0.00018296565,0.00033575646,0.000044762513,0.000017629254],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021613923,0.0001627271,0.0002666849,0.00008664237,0.000093629686,0.0000055005385,0.00021999054,0.00018579401,0.00003798156],"category_scores_gemma":[0.0000896112,0.00013053448,0.00005621982,0.00008044846,0.00035237023,0.00033015918,0.00015239193,0.000208087,0.000003961443],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003814581,0.000100827456,0.0019139268,0.000025508238,0.000023599046,0.0000013630698,0.0019926312,0.000018487768,0.99481994,0.00030940026,0.00019533058,0.00021750505],"study_design_scores_gemma":[0.0011942557,0.00015039119,0.010688581,0.00003090086,0.0000080652335,0.000026970738,0.00028169018,0.00032781833,0.9869595,0.000018426384,0.0001790469,0.00013432882],"about_ca_topic_score_codex":0.000039795257,"about_ca_topic_score_gemma":0.0000054006114,"teacher_disagreement_score":0.008774653,"about_ca_system_score_codex":0.00003107128,"about_ca_system_score_gemma":0.00011219389,"threshold_uncertainty_score":0.53230417},"labels":[],"label_agreement":null},{"id":"W2042259472","doi":"10.1158/1538-7445.pedcan-b33","title":"Abstract B33: Toll-like receptor ligands delay acute lymphoblastic leukemia onset via depletion of pre-leukemic cells","year":2014,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Leukemia; Immunology; Receptor; Population; Immune system; Cancer research; Toll-like receptor; Splenocyte; Cancer; Acute leukemia; Biology; Medicine; Innate immune system; Internal medicine","score_opus":0.017105050636802555,"score_gpt":0.30478673912991133,"score_spread":0.28768168849310877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042259472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965102,0.001204392,0.00043208312,0.00013134922,0.0008216546,0.00036426864,0.00003658547,0.000049006052,0.00045046498],"genre_scores_gemma":[0.99380827,0.0011013311,0.000027470793,0.000050421742,0.00008910972,0.00012991345,0.0001624677,0.00003276288,0.0045982427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979377,0.00039605756,0.00048472933,0.00036627997,0.00017394368,0.0006413177],"domain_scores_gemma":[0.99838424,0.00055945024,0.00016640988,0.00049795187,0.00034411438,0.000047852216],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0014114975,0.00019075786,0.00033487662,0.00033237206,0.00026524274,0.000025175977,0.00042041787,0.00039529777,0.0014051034],"category_scores_gemma":[0.00014541556,0.00017259973,0.00011161904,0.0003215917,0.00036401497,0.00016567582,0.00012721072,0.0005650959,0.0012971455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018867713,0.000037339116,0.00020739829,0.00007837651,0.0001619782,0.0000025250092,0.00038934613,0.000096210184,0.9714065,0.000041533676,0.016930375,0.008761646],"study_design_scores_gemma":[0.001311738,0.00033670713,0.0066454727,0.00015639878,0.000027684671,0.000025749416,0.00005104061,0.00007480568,0.9601587,0.000068911446,0.030964874,0.0001779189],"about_ca_topic_score_codex":0.00077327824,"about_ca_topic_score_gemma":0.000053967415,"teacher_disagreement_score":0.0140344985,"about_ca_system_score_codex":0.0006697837,"about_ca_system_score_gemma":0.00072777935,"threshold_uncertainty_score":0.9995077},"labels":[],"label_agreement":null},{"id":"W2042329838","doi":"10.1016/j.cellimm.2005.06.003","title":"Erratum to “Polarization and directed migration of murine neutrophils is dependent on cell-surface expression of CD44” [Cell. Immunol. 231 (2004) 146–157]","year":2005,"lang":"en","type":"erratum","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"CD44; Immunology; Library science; Medicine; Molecular biology; Biology; Cell; Genetics; Computer science","score_opus":0.005442025495634821,"score_gpt":0.20200562590119908,"score_spread":0.19656360040556425,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042329838","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8728313,0.10519051,0.00057078927,0.00056894164,0.013279499,0.0016675582,0.00022813534,0.00019942378,0.005463842],"genre_scores_gemma":[0.7467224,0.0074353586,0.0003894941,0.00018079516,0.00024662644,0.00007530934,0.005915501,0.00019132711,0.23884319],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9953526,0.0010587145,0.0016448763,0.0009779367,0.00020350564,0.00076235563],"domain_scores_gemma":[0.9964003,0.0001900992,0.0015378142,0.0013678324,0.00045361428,0.00005034868],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00047844872,0.0008539395,0.0014632714,0.0008383061,0.0002777272,0.000029264733,0.00067948067,0.002649501,0.000667302],"category_scores_gemma":[0.00011735198,0.0008470365,0.00029201547,0.00047936564,0.00036526,0.0002104991,0.00038824457,0.0015676114,0.0003147286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015711614,0.00046007676,0.000043268974,0.0002587161,0.00024997775,0.0000075929097,0.0010834362,0.000059091548,0.8899493,0.000041737138,0.10541061,0.00086497515],"study_design_scores_gemma":[0.0018413701,0.0011974941,0.00093659706,0.00043634596,0.00019503625,0.00002202546,0.00017513252,0.000016316773,0.84619147,0.000028845052,0.14838281,0.00057657337],"about_ca_topic_score_codex":0.00037605266,"about_ca_topic_score_gemma":0.000020580866,"teacher_disagreement_score":0.23337935,"about_ca_system_score_codex":0.00018016562,"about_ca_system_score_gemma":0.00032062668,"threshold_uncertainty_score":0.99939805},"labels":[],"label_agreement":null},{"id":"W2042374244","doi":"10.1371/journal.pone.0061326","title":"A Non-Synonymous Coding Variant (L616F) in the TLR5 Gene Is Potentially Associated with Crohn's Disease and Influences Responses to Bacterial Flagellin","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine; Children's Hospital of Eastern Ontario; University of British Columbia Hospital","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research","keywords":"Single-nucleotide polymorphism; TLR5; Flagellin; Biology; Genetics; Linkage disequilibrium; Haplotype; Genome-wide association study; SNP; Allele; ATG16L1; Gene; Genotype","score_opus":0.018754596249779206,"score_gpt":0.20706611315408505,"score_spread":0.18831151690430584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042374244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971531,0.0002521356,0.000024423132,0.0016560504,0.000050451894,0.0007560088,0.000024259041,0.000026866384,0.000056695073],"genre_scores_gemma":[0.99797535,0.000097641205,0.00011891171,0.0005883373,0.000032470958,0.00013385627,0.00006172007,0.000013223566,0.0009784726],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986972,0.00041459742,0.00026955592,0.0002341707,0.00008158811,0.00030288857],"domain_scores_gemma":[0.9992556,0.0002684554,0.000105582345,0.00023391742,0.00010414487,0.00003233089],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043835441,0.00015668466,0.00024035353,0.00014012275,0.00019748391,0.00010100671,0.00019344852,0.00012559789,0.0003331944],"category_scores_gemma":[0.00033561036,0.00010796001,0.0000282847,0.00017831058,0.00010286015,0.00020610195,0.000060544808,0.00017402848,0.00022768314],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027807804,0.0004065177,0.0030543492,0.00001777706,0.00031698847,0.00010264578,0.0026629847,0.000002053169,0.9899617,0.000018467787,0.00024262484,0.00043313153],"study_design_scores_gemma":[0.0017804893,0.0004189583,0.83097625,0.0003269096,0.00021256611,0.000018024459,0.00022960332,0.000042435433,0.16549768,0.00006638787,0.00015675614,0.00027396934],"about_ca_topic_score_codex":0.00022845095,"about_ca_topic_score_gemma":0.000038582693,"teacher_disagreement_score":0.82792187,"about_ca_system_score_codex":0.00002702293,"about_ca_system_score_gemma":0.00009585776,"threshold_uncertainty_score":0.44024816},"labels":[],"label_agreement":null},{"id":"W2042458819","doi":"10.1002/eji.200737393","title":"RIP2 contributes to Nod signaling but is not essential for T cell proliferation, T helper differentiation or TLR responses","year":2007,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Nod; Innate immune system; Cell biology; Biology; Acquired immune system; Signal transduction; T cell; Inflammasome; Immunology; Immune system; Inflammation; Genetics","score_opus":0.015146057893760112,"score_gpt":0.25177550647024705,"score_spread":0.23662944857648693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042458819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8975543,0.0015683324,0.09701971,0.0016383952,0.0016488397,0.0003821131,0.000017692373,0.000028159226,0.00014248367],"genre_scores_gemma":[0.9926591,0.000077900935,0.0007392123,0.000805272,0.00022410743,0.000005071996,0.000040339593,0.000039098464,0.005409877],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969939,0.0010416051,0.0012192487,0.00021555259,0.00006815816,0.00046152962],"domain_scores_gemma":[0.99755955,0.00068820996,0.0007168048,0.00023068897,0.0007733069,0.000031450916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026863997,0.0002258597,0.00042602955,0.00059026905,0.00032955932,0.000053998974,0.00035936994,0.00015622265,0.00031864],"category_scores_gemma":[0.0009396496,0.00017849541,0.00019678049,0.00018183279,0.000113008275,0.00020875737,0.00007947943,0.00036346575,0.0003169021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.025567623,0.00013995003,0.00019104763,0.00001639176,0.00035408107,0.00003397504,0.0013360506,0.000005752611,0.96320057,0.00014190358,0.0027861109,0.006226547],"study_design_scores_gemma":[0.004589266,0.0017671387,0.010586978,0.00006722678,0.00010773003,0.00024552704,0.0005368547,0.0000036935485,0.93569386,0.000027122227,0.046188336,0.00018625797],"about_ca_topic_score_codex":0.0000036485462,"about_ca_topic_score_gemma":0.0000029267355,"teacher_disagreement_score":0.0962805,"about_ca_system_score_codex":0.000074677155,"about_ca_system_score_gemma":0.0001550418,"threshold_uncertainty_score":0.72788316},"labels":[],"label_agreement":null},{"id":"W2042685802","doi":"10.1159/000381265","title":"&lt;b&gt;&lt;i&gt;VPS13D&lt;/i&gt;&lt;/b&gt; Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; National Sanitarium Association","keywords":"Genome-wide association study; Septic shock; Biology; Genotype; Allele; Locus (genetics); Genetic association; Genetics; Gene; Molecular biology; Immunology; Single-nucleotide polymorphism; Sepsis","score_opus":0.02152469623661576,"score_gpt":0.24944230636356676,"score_spread":0.227917610126951,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042685802","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910911,0.0054071797,0.00010447666,0.0008225948,0.0013522621,0.00044987467,0.000036172005,0.000050123035,0.0006862448],"genre_scores_gemma":[0.9967905,0.001031128,0.00014734027,0.00014282875,0.00014509776,0.000014237048,0.00011838517,0.000046658304,0.0015637769],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9951193,0.002064731,0.0014933529,0.00036592374,0.00028692398,0.0006697969],"domain_scores_gemma":[0.99646735,0.00019900473,0.0014851934,0.0006755937,0.0010609721,0.00011191048],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0048023914,0.00046677637,0.0009707727,0.00058208546,0.00038502156,0.00008920865,0.00047987123,0.0005747571,0.00016376737],"category_scores_gemma":[0.0015600284,0.00038543786,0.0001871804,0.0006400595,0.0003728921,0.0009136822,0.00019320167,0.0012086026,0.00006846629],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023367081,0.0006207666,0.0020933836,0.00003802667,0.0011254126,0.0001076943,0.0034075736,0.00012688291,0.98512584,0.00016276562,0.0035627307,0.001292223],"study_design_scores_gemma":[0.012335088,0.0035407732,0.5590219,0.0011033262,0.00084779307,0.004174261,0.00058145006,0.00028620564,0.38438597,0.0009131868,0.03146203,0.0013480484],"about_ca_topic_score_codex":0.00007462743,"about_ca_topic_score_gemma":0.00033859644,"teacher_disagreement_score":0.6007399,"about_ca_system_score_codex":0.00049862906,"about_ca_system_score_gemma":0.0005859111,"threshold_uncertainty_score":0.99985975},"labels":[],"label_agreement":null},{"id":"W2042728718","doi":"10.1038/nm.2306","title":"Alum interaction with dendritic cell membrane lipids is essential for its adjuvanticity","year":2011,"lang":"en","type":"article","venue":"Nature Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":405,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Glycomics Centre; University of Calgary","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Alum; Cell biology; Inflammasome; Chemistry; Immune system; Dendritic cell; Adjuvant; Cell adhesion molecule; Receptor; Biology; Biochemistry; Immunology","score_opus":0.012590858457584427,"score_gpt":0.25601592758965425,"score_spread":0.24342506913206982,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042728718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9779622,0.005924339,0.001780233,0.0017501481,0.0038818936,0.0006499145,0.000011024904,0.00009708229,0.00794315],"genre_scores_gemma":[0.99387825,0.00010904077,0.0001256223,0.0007169877,0.0002478434,0.000025878831,0.00013752643,0.000017597065,0.0047412766],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914855,0.000086733904,0.00024147407,0.00022289509,0.000052915744,0.00024742325],"domain_scores_gemma":[0.9993294,0.00013011147,0.00012423341,0.00019243087,0.00020432852,0.000019531011],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023969253,0.00016067813,0.0002673371,0.00014118927,0.000118063195,0.0000036726856,0.00013383286,0.00043187794,0.001870284],"category_scores_gemma":[0.0001392443,0.0001102087,0.00005238116,0.00011480514,0.00011701786,0.00014533807,0.00001941371,0.00055033126,0.00016009505],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002253354,0.00009023345,0.00007264361,0.00011759304,0.00011521858,0.000005574294,0.0019487736,2.2994675e-7,0.9842299,0.00047619504,0.009249419,0.0014408138],"study_design_scores_gemma":[0.0029002612,0.00074958603,0.00075797003,0.00014270836,0.00017043925,0.00008485176,0.00036160118,0.000017849323,0.9411453,0.000031390606,0.053509988,0.00012804675],"about_ca_topic_score_codex":0.000033270262,"about_ca_topic_score_gemma":0.000015494265,"teacher_disagreement_score":0.04426057,"about_ca_system_score_codex":0.00002300456,"about_ca_system_score_gemma":0.0000392488,"threshold_uncertainty_score":0.99904215},"labels":[],"label_agreement":null},{"id":"W2042962853","doi":"10.1016/j.dci.2014.03.022","title":"The porcine innate immune system: An update","year":2014,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":273,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Innate immune system; Immune system; Biology; Disease; Animal model; Key (lock); Neuroscience; Immunology; Medicine; Pathology; Ecology","score_opus":0.03894822318023609,"score_gpt":0.3193985042358326,"score_spread":0.2804502810555965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2042962853","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007576955,0.9915966,0.0000779744,0.00005458027,0.0029389963,0.0013668311,0.000030796567,0.00026941218,0.0029071462],"genre_scores_gemma":[0.0040445896,0.9875642,0.00009780307,0.000036616464,0.00007813648,0.000580354,0.0036451463,0.00008799585,0.0038651733],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9922346,0.0035493905,0.0022425794,0.00082590606,0.00009786463,0.0010496451],"domain_scores_gemma":[0.9966357,0.0007132704,0.001418424,0.00096947164,0.00022354728,0.000039589326],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013549847,0.0010788762,0.0033567308,0.0004337004,0.0015514941,0.00011654969,0.0016320129,0.0010311891,0.00026609693],"category_scores_gemma":[0.000070024755,0.0007142643,0.0004964792,0.0004998319,0.0009516615,0.00027169002,0.0005867467,0.0014308437,0.013854771],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061981316,0.0001684877,0.000004498536,0.0017693917,0.005269428,0.000031573247,0.0010867257,7.032807e-7,0.0029898637,0.02395232,0.002759524,0.9613477],"study_design_scores_gemma":[0.0008685899,0.000257155,0.00009640366,0.0021125614,0.0003388487,0.0013488764,0.00082216633,0.0000021801613,0.0025272574,0.000021881217,0.99080324,0.000800813],"about_ca_topic_score_codex":0.000062782674,"about_ca_topic_score_gemma":0.000030706058,"teacher_disagreement_score":0.9880437,"about_ca_system_score_codex":0.00065147167,"about_ca_system_score_gemma":0.0007266896,"threshold_uncertainty_score":0.99974835},"labels":[],"label_agreement":null},{"id":"W2043367837","doi":"10.1016/j.jneuroim.2004.10.015","title":"Toll-like receptors on astrocytes: patterning for immunity","year":2004,"lang":"en","type":"review","venue":"Journal of Neuroimmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Neurological Institute and Hospital","funders":"","keywords":"Innate immune system; Biology; Pattern recognition receptor; TLR2; Acquired immune system; Immune system; Pathogen-associated molecular pattern; Toll-like receptor; TLR9; TLR3; Chemokine; Immunology; TLR4; TLR7; Receptor; Interferon; Cell biology; Gene; Gene expression; Genetics","score_opus":0.04828758012148679,"score_gpt":0.3194837956646269,"score_spread":0.2711962155431401,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043367837","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009088052,0.9887654,0.00024372697,0.00009024481,0.009225306,0.0006266923,0.000016871358,0.000036713398,0.00008624837],"genre_scores_gemma":[0.000203476,0.9977745,0.00010255391,0.0000966557,0.00016218895,0.000042550466,0.00017354029,0.00009534261,0.0013491974],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957375,0.0013174587,0.0019472138,0.00032461627,0.000076156764,0.00059707137],"domain_scores_gemma":[0.99490285,0.001425935,0.0027981692,0.00057822495,0.0002675844,0.00002725029],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007866083,0.00061646505,0.0025678766,0.00095647946,0.00029174835,0.000034510675,0.0009511998,0.0010838187,0.00024465332],"category_scores_gemma":[0.00060234114,0.0004832355,0.0014073013,0.00021064484,0.00021485864,0.00017784427,0.00013543425,0.0023596191,0.00045848425],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013170338,0.0002846661,0.0000014305417,0.0027916778,0.0017638956,0.000069819514,0.00020768683,0.000009508075,0.00460235,0.00019785363,0.002250336,0.9865037],"study_design_scores_gemma":[0.0017339789,0.0032616083,0.00004342326,0.008204448,0.0006950532,0.0033593469,0.000060683567,7.632152e-8,0.0004007207,0.000028980192,0.98186666,0.00034501796],"about_ca_topic_score_codex":0.000006316196,"about_ca_topic_score_gemma":6.1912465e-7,"teacher_disagreement_score":0.9861587,"about_ca_system_score_codex":0.00034217566,"about_ca_system_score_gemma":0.0007666665,"threshold_uncertainty_score":0.999942},"labels":[],"label_agreement":null},{"id":"W2043999480","doi":"10.1002/ibd.20379","title":"Intestinal epithelial barrier dysfunction and dendritic cell redistribution during early stages of inflammation in the rat: Role for TLR-2 and -4 blockage","year":2008,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Inflammation; Immunology; Cell biology; Redistribution (election); Biology; Chemistry; Medicine","score_opus":0.005603931380330423,"score_gpt":0.1988928826957485,"score_spread":0.1932889513154181,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2043999480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706763,0.0019566729,0.00012799932,0.000052398747,0.00012905181,0.0005200043,0.000077387536,0.000034753542,0.000034127257],"genre_scores_gemma":[0.9994318,0.00014305918,0.000013484121,0.0000094957095,0.00006089381,0.00010904211,0.00012107804,0.00001159363,0.00009959098],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988315,0.00025344425,0.00041775723,0.00020614588,0.00006386561,0.00022726128],"domain_scores_gemma":[0.99924016,0.0002788576,0.00018063992,0.00017653663,0.00009856478,0.000025216748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025643662,0.00016364506,0.00018063266,0.00014893328,0.00031224964,0.000021771362,0.00009600864,0.00013031809,0.000019278066],"category_scores_gemma":[0.00029935248,0.00013791477,0.000060276812,0.00007383573,0.00028860904,0.00033284302,0.000041227693,0.00013936452,0.000008129729],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012436188,0.00004711401,0.10468431,0.00020118254,0.000023945167,0.0000180177,0.001572515,0.000012282165,0.8911071,0.00032229352,0.00003647466,0.0007311886],"study_design_scores_gemma":[0.0018535499,0.00014138382,0.6801221,0.00007120472,0.000055298828,0.000070320464,0.00047601844,0.00003141642,0.31641135,0.00032304277,0.00030715603,0.00013718421],"about_ca_topic_score_codex":0.000019675259,"about_ca_topic_score_gemma":0.000008607262,"teacher_disagreement_score":0.5754378,"about_ca_system_score_codex":0.000029975965,"about_ca_system_score_gemma":0.000072521034,"threshold_uncertainty_score":0.5624001},"labels":[],"label_agreement":null},{"id":"W2044235450","doi":"10.3791/2551","title":"Intravital Microscopy of the Inguinal Lymph Node","year":2011,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Northern British Columbia","funders":"Canadian Institutes of Health Research; Centre for Blood Research, University of British Columbia; University of British Columbia","keywords":"Immune system; High endothelial venules; Lymph; Arteriole; Lymph node; Acquired immune system; Cell biology; Immunology; Biology; Dendritic cell; Venule; Medicine; Microcirculation; Pathology; Internal medicine","score_opus":0.02583738637662875,"score_gpt":0.3701009438110262,"score_spread":0.34426355743439746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044235450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955992,0.0021045345,0.00023766537,0.000027352338,0.0012110758,0.00007022109,0.0000022308573,0.000004682176,0.0007430065],"genre_scores_gemma":[0.999065,0.000041593026,0.00041897342,0.00008149759,0.000028936678,0.0000018314041,0.0000019851097,0.000009640797,0.0003505629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988627,0.00024506578,0.0005824007,0.00006764404,0.00006447721,0.00017775405],"domain_scores_gemma":[0.9990175,0.000028762986,0.0006315474,0.0001669347,0.00014139013,0.000013905794],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034370756,0.000105291285,0.0002509479,0.00009855975,0.00008615733,0.0000059442978,0.00030429737,0.000114620416,0.00047738446],"category_scores_gemma":[0.00008584228,0.000067992216,0.00017504414,0.000086515865,0.00012004191,0.00012802036,0.00007373915,0.0001438538,0.00004286152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013331872,0.00027686343,0.0028796704,0.000006565504,0.00018213592,0.0000033752478,0.0048326673,1.3554137e-7,0.9893373,0.0003337382,0.00050932076,0.00030503733],"study_design_scores_gemma":[0.0026012086,0.00017955867,0.014187192,0.00009175544,0.000034566558,0.00014537788,0.0008618245,5.2546693e-7,0.9784382,0.00007028375,0.003321415,0.000068075904],"about_ca_topic_score_codex":0.000022193679,"about_ca_topic_score_gemma":1.5294074e-7,"teacher_disagreement_score":0.011307521,"about_ca_system_score_codex":0.000041504292,"about_ca_system_score_gemma":0.00009807327,"threshold_uncertainty_score":0.5227025},"labels":[],"label_agreement":null},{"id":"W2044864865","doi":"10.1097/01.ccm.0000284511.73556.59","title":"A CXCL2 polymorphism is associated with better outcomes in patients with severe sepsis*","year":2007,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"","keywords":"Medicine; Systemic inflammatory response syndrome; Sepsis; Internal medicine; Septic shock; ARDS; APACHE II; Population; Intensive care; Odds ratio; Intensive care medicine; Intensive care unit; Lung","score_opus":0.007788142169287143,"score_gpt":0.25352124808005705,"score_spread":0.2457331059107699,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2044864865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99269384,0.0005819492,0.00009500577,0.0044556204,0.00020570132,0.00020073404,0.000012030407,0.000042142743,0.0017129573],"genre_scores_gemma":[0.99626905,0.0000013665777,0.000023398661,0.0029218262,0.000022521413,0.000007315118,0.00023318919,0.000017208447,0.00050415174],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99885315,0.00010541556,0.00029595333,0.0002166155,0.00010994257,0.0004189035],"domain_scores_gemma":[0.99901813,0.00045575073,0.000045774566,0.00019946556,0.00024676154,0.000034126242],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023767303,0.00017995217,0.0003687219,0.00016660392,0.000086387576,0.0000047823605,0.00009812646,0.0002126592,0.0006881044],"category_scores_gemma":[0.0005026217,0.00010953466,0.000029950048,0.00018833838,0.00038262416,0.000091789385,0.000024821707,0.0003187449,0.00007333042],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013463708,0.00016434562,0.98688483,0.000036662204,0.00013789147,0.00007966397,0.0032372295,1.2580966e-7,0.0018564195,0.00025720627,0.001453343,0.0045459066],"study_design_scores_gemma":[0.0066317846,0.0013794141,0.98435557,0.00028919525,0.00010282061,0.000013083102,0.0015440047,2.2862638e-7,0.0038905954,0.000037573296,0.0015484866,0.00020726245],"about_ca_topic_score_codex":0.00007072572,"about_ca_topic_score_gemma":0.00006823545,"teacher_disagreement_score":0.005285414,"about_ca_system_score_codex":0.00009462679,"about_ca_system_score_gemma":0.00003552958,"threshold_uncertainty_score":0.7534261},"labels":[],"label_agreement":null},{"id":"W2045054556","doi":"10.1038/ncomms7168","title":"Toll-like receptor ligands sensitize B-cell receptor signalling by reducing actin-dependent spatial confinement of the receptor","year":2015,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of British Columbia","funders":"Canadian Institutes of Health Research; Fondation Bettencourt Schueller; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Heart and Stroke Foundation of Canada","keywords":"B-cell receptor; Cell biology; Receptor; Crosstalk; Cofilin; Signalling; Actin; Toll-like receptor; Biology; Chemistry; Cell; Cytoskeleton; Actin cytoskeleton; B cell; Antibody; Innate immune system; Physics; Immunology; Biochemistry","score_opus":0.015447366847252224,"score_gpt":0.25066397412811575,"score_spread":0.23521660728086352,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045054556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92834836,0.030619439,0.0003241386,0.02247869,0.0060917293,0.0015631745,0.0002827241,0.00021694288,0.01007477],"genre_scores_gemma":[0.99119604,0.00082239875,0.00067295344,0.00028337442,0.000061687715,0.000044619246,0.00083274784,0.00002814088,0.0060580666],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979745,0.0007093515,0.00062473543,0.00025705522,0.00014107072,0.0002932665],"domain_scores_gemma":[0.9969374,0.00046043762,0.0004993078,0.0016056873,0.0004550049,0.00004215533],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009377439,0.0002273502,0.00031590034,0.000096004245,0.0004628326,0.000028116767,0.0011489508,0.00063527585,0.00037416484],"category_scores_gemma":[0.00041892743,0.00018286656,0.000152164,0.00024315328,0.00026065492,0.000114929964,0.00047516084,0.0013777724,0.00029817678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020467266,0.0001843309,0.000069988775,0.000009257535,0.0000961726,6.7768326e-8,0.0011491945,0.000014451301,0.8657121,0.00025002437,0.13025741,0.002052335],"study_design_scores_gemma":[0.0008403451,0.000072635965,0.000027829987,0.000058707654,0.000039454746,0.0000049940695,0.0006563237,0.000020703963,0.6309698,0.000007351116,0.36716443,0.0001373708],"about_ca_topic_score_codex":0.00029553394,"about_ca_topic_score_gemma":0.00008080293,"teacher_disagreement_score":0.23690702,"about_ca_system_score_codex":0.00015321183,"about_ca_system_score_gemma":0.0002993938,"threshold_uncertainty_score":0.74570817},"labels":[],"label_agreement":null},{"id":"W2045277695","doi":"10.2174/1566524023362159","title":"Toll-like Receptor 9, CpG DNA and Innate Immunity","year":2002,"lang":"en","type":"review","venue":"Current Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"TLR9; Innate immune system; Toll-Like Receptor 9; CpG site; Biology; Acquired immune system; Immune system; Pattern recognition receptor; CpG Oligodeoxynucleotide; Toll-like receptor; Immunity; Cell biology; Innate lymphoid cell; Immunology; Intrinsic immunity; DNA methylation; Gene; Genetics; Gene expression","score_opus":0.03914635005385671,"score_gpt":0.31786565341691425,"score_spread":0.27871930336305756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045277695","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019752479,0.9944456,0.00010632703,0.0001353236,0.0036643166,0.0006981718,0.000018457233,0.00007781873,0.0006564324],"genre_scores_gemma":[0.00006325161,0.9967971,0.0000060040425,0.000059987582,0.00012639485,0.00012379533,0.0016517639,0.000052390467,0.0011193119],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971679,0.0009963585,0.00086508866,0.00045362825,0.00008781944,0.00042920324],"domain_scores_gemma":[0.9985837,0.00017525768,0.0004496951,0.00066300924,0.000077210054,0.000051135146],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00053548056,0.0005719497,0.0017009625,0.0004121056,0.00017431442,0.000013019639,0.00036424445,0.0005743996,0.0015363302],"category_scores_gemma":[0.00029878915,0.00042181328,0.00025771876,0.00030483754,0.00041960637,0.00006581381,0.00019657763,0.0011215619,0.0010550015],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018490487,0.000051102175,3.259611e-7,0.0035262876,0.00029001286,0.00001262212,0.00015794497,1.239124e-8,0.0034851125,0.0002742263,0.012870267,0.9793136],"study_design_scores_gemma":[0.0008218741,0.0001705991,0.0000023964417,0.011917447,0.00079610734,0.00019803735,0.000020571168,3.9017772e-7,0.00045756894,0.000021841019,0.985217,0.0003761729],"about_ca_topic_score_codex":0.000010975516,"about_ca_topic_score_gemma":3.8088893e-7,"teacher_disagreement_score":0.97893745,"about_ca_system_score_codex":0.000078877245,"about_ca_system_score_gemma":0.00009684832,"threshold_uncertainty_score":0.9998234},"labels":[],"label_agreement":null},{"id":"W2045288098","doi":"10.1097/shk.0b013e31822d6442","title":"The Toll-like Receptor 9 Ligand CPG-C Attenuates Acute Inflammatory Cardiac Dysfunction","year":2011,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Ejection fraction; Medicine; TLR9; Ischemia; CpG site; Internal medicine; Endocrinology; Chemistry; Gene expression; Heart failure; Gene; DNA methylation","score_opus":0.010191257874100858,"score_gpt":0.20282905529964837,"score_spread":0.1926377974255475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045288098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9850959,0.0032945368,0.00009645388,0.0003452129,0.004560709,0.00030790825,0.000010409418,0.00014039011,0.0061484748],"genre_scores_gemma":[0.95594347,0.0013310167,0.000053505606,0.00017226177,0.00017695439,0.00010238636,0.00014862423,0.000037502414,0.042034272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989349,0.00022523147,0.0002833108,0.00019256985,0.000039274415,0.00032467805],"domain_scores_gemma":[0.9992927,0.00011438694,0.000115766605,0.00037760835,0.00008274155,0.000016849106],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003861476,0.0001591311,0.00017732805,0.00005860856,0.00047840286,0.000023166362,0.00019926614,0.00022630859,0.00037673643],"category_scores_gemma":[0.00004906205,0.000110385256,0.00012597765,0.00008551561,0.00015509079,0.00016762978,0.00007172241,0.00023361259,0.0044417605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011502027,0.000025710184,0.002085104,0.0000094771485,0.0006929471,0.0000035394835,0.0015039404,4.1434168e-7,0.88402385,0.001546189,0.08227961,0.026679035],"study_design_scores_gemma":[0.00039590787,0.00012500597,0.0069131884,0.00001404656,0.00006923821,0.000014027813,0.000384616,0.0000015219446,0.5286529,0.00019318938,0.46308526,0.00015107669],"about_ca_topic_score_codex":0.000038826765,"about_ca_topic_score_gemma":0.000011033611,"teacher_disagreement_score":0.38080564,"about_ca_system_score_codex":0.000040664683,"about_ca_system_score_gemma":0.00006217275,"threshold_uncertainty_score":0.9963334},"labels":[],"label_agreement":null},{"id":"W2045596948","doi":"10.1097/00003246-200011000-00023","title":"A single endotoxin injection in the rabbit causes prolonged blood vessel dysfunction and a procoagulant state","year":2000,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"","keywords":"Medicine; Sodium nitroprusside; Internal medicine; CD31; Endocrinology; Endothelium; Clotting time; Endothelial stem cell; Endothelial dysfunction; Platelet; Nitric oxide; Immunohistochemistry; In vitro; Biology","score_opus":0.013664142328902767,"score_gpt":0.2559355871760954,"score_spread":0.24227144484719262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045596948","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900391,0.006059088,0.00003138982,0.0022814823,0.00016862099,0.00040295787,0.0000029228097,0.000040532967,0.00097388466],"genre_scores_gemma":[0.99902457,0.00010152106,0.000005619466,0.0003600902,0.00005874098,0.00009076358,0.000058652182,0.0000077691575,0.0002922673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989198,0.00036990072,0.0002425457,0.00018590126,0.00005409456,0.00022777305],"domain_scores_gemma":[0.9994523,0.00029785399,0.000021885482,0.00014058655,0.00007292245,0.000014475186],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003327535,0.000115432296,0.00018129806,0.000092572845,0.00013528852,0.000012375515,0.00006432503,0.00010833963,0.00031843584],"category_scores_gemma":[0.000473599,0.00007295895,0.000019108225,0.00014513028,0.0003320249,0.00009570638,0.0000110431965,0.00026221087,0.00003982122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012659658,0.00021978011,0.0016224078,0.00021472786,0.000040338255,0.00007038897,0.01848051,0.0000027388362,0.91387236,0.0004995667,0.0005441177,0.06316712],"study_design_scores_gemma":[0.014435303,0.011857071,0.07293114,0.0009283614,0.00064253237,0.0035416493,0.03301129,0.000029808563,0.78863066,0.0018524666,0.07145566,0.00068406865],"about_ca_topic_score_codex":0.00014337918,"about_ca_topic_score_gemma":0.00007539655,"teacher_disagreement_score":0.1252417,"about_ca_system_score_codex":0.00002270347,"about_ca_system_score_gemma":0.000026566655,"threshold_uncertainty_score":0.3486649},"labels":[],"label_agreement":null},{"id":"W2045807962","doi":"10.1097/qad.0b013e3282f4de35","title":"Toll-like receptor expression and responsiveness are increased in viraemic HIV-1 infection","year":2008,"lang":"en","type":"article","venue":"AIDS","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; McMaster University; University of Manitoba","funders":"","keywords":"Virology; Human immunodeficiency virus (HIV); Toll-like receptor; Immunology; Lentivirus; Biology; Viral disease; Receptor; Toll; Medicine; Immune system; Innate immune system; Genetics","score_opus":0.010475672767290431,"score_gpt":0.220690488739183,"score_spread":0.21021481597189257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045807962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99808115,0.0010762272,0.00006674215,0.00007304004,0.00030724975,0.00014965795,0.0000044230865,0.000050417606,0.00019109977],"genre_scores_gemma":[0.9977968,0.0004979507,0.000048437934,0.000090432106,0.000020307732,0.000030000478,0.0000847427,0.000010316875,0.0014210409],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892443,0.00046646403,0.00021694419,0.00018905166,0.000025680047,0.00017739662],"domain_scores_gemma":[0.9995343,0.0001522644,0.000087709996,0.00017422083,0.00003848514,0.000013009571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025710423,0.00011377993,0.00018498347,0.00022485288,0.00016602798,0.0000057409793,0.000056145833,0.00022810073,0.00019192176],"category_scores_gemma":[0.00017401706,0.00010495515,0.000034180266,0.00014872194,0.00009970776,0.00019850457,0.000050733543,0.00018804132,0.00033434195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010554328,0.000038156944,0.10363739,0.00001013647,0.000011351766,0.0000090564345,0.00036192007,0.0000026871066,0.89172596,0.00002566713,0.0018752903,0.0012469352],"study_design_scores_gemma":[0.001580374,0.00015131205,0.35965154,0.000110044595,0.0000068595155,0.00012530934,0.00011670803,0.000002873917,0.6061753,0.000023116283,0.03191437,0.00014219484],"about_ca_topic_score_codex":0.00016632989,"about_ca_topic_score_gemma":0.000009088905,"teacher_disagreement_score":0.28555068,"about_ca_system_score_codex":0.00004528058,"about_ca_system_score_gemma":0.000045309753,"threshold_uncertainty_score":0.42974007},"labels":[],"label_agreement":null},{"id":"W2045892365","doi":"10.1097/shk.0b013e3181c0f068","title":"SEPSIS, LEUKOCYTES, AND NITRIC OXIDE (NO)","year":2010,"lang":"en","type":"review","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health and Social Services Centre University Institute of Geriatrics of Sherbrooke; Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Sepsis; Septic shock; Immune system; Nitric oxide; Immunology; Medicine; Inflammation; Shock (circulatory); Biology; Cell biology; Intensive care medicine; Internal medicine","score_opus":0.018793505552919598,"score_gpt":0.281721730489067,"score_spread":0.2629282249361474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045892365","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00037052165,0.9952678,0.000008191376,0.0000104461205,0.00058455725,0.0003875951,0.000015774112,0.00007194065,0.003283154],"genre_scores_gemma":[0.000008365942,0.97898895,0.000067318775,0.000036553756,0.00007816242,0.000031108215,0.0004645755,0.000037099097,0.020287847],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985972,0.00028785333,0.0004605199,0.0003147028,0.000025701223,0.00031404608],"domain_scores_gemma":[0.9990267,0.0002461404,0.00024248874,0.00041137525,0.00005377555,0.000019483075],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025694005,0.00034085216,0.0009917164,0.00023466241,0.00014834512,0.000025863303,0.00023072667,0.0010870175,0.000506269],"category_scores_gemma":[0.00017456886,0.00026494017,0.00024149334,0.00014365213,0.0001125455,0.00007297481,0.00012477871,0.00093234266,0.006686819],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000016416458,0.000011284005,0.0000012346591,0.0014809131,0.00014869646,0.0000044788453,0.0000097699,5.117214e-9,0.0013552823,0.00014915131,0.007477325,0.98934543],"study_design_scores_gemma":[0.00020471009,0.00002488689,0.000020906176,0.0012178543,0.00033183524,0.00022338566,0.000004208634,1.349557e-7,0.00031816168,0.00002691289,0.9973426,0.00028444343],"about_ca_topic_score_codex":0.000032239375,"about_ca_topic_score_gemma":0.0000033058573,"teacher_disagreement_score":0.98986524,"about_ca_system_score_codex":0.00004288416,"about_ca_system_score_gemma":0.0002380524,"threshold_uncertainty_score":0.9999803},"labels":[],"label_agreement":null},{"id":"W2045965701","doi":"10.1016/j.jri.2007.04.008","title":"Expression of Toll-like receptors in murine vaginal epithelium is affected by the estrous cycle and stromal cells","year":2007,"lang":"en","type":"article","venue":"Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"TLR2; Estrous cycle; Stromal cell; Biology; Epithelium; Innate immune system; Immune system; Receptor; Andrology; Endocrinology; Internal medicine; Immunology; Medicine; Cancer research","score_opus":0.004236108975137676,"score_gpt":0.22412516551050252,"score_spread":0.21988905653536484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2045965701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98479474,0.0125196865,0.00018295363,0.00073722895,0.0014824718,0.00018662364,0.0000038135288,0.000008202567,0.00008429279],"genre_scores_gemma":[0.9983544,0.000639476,0.00016335427,0.00003244349,0.00006647625,0.000002463379,0.000006115707,0.000013553126,0.00072174554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980288,0.00057654385,0.0007511249,0.00025348202,0.000066518165,0.00032354108],"domain_scores_gemma":[0.99834704,0.0002641492,0.00078405126,0.00035734888,0.00023319047,0.000014233071],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017120596,0.00017506591,0.00044141055,0.00029402418,0.00009662632,0.00000670918,0.00025570593,0.00023349361,0.00011458511],"category_scores_gemma":[0.00023527206,0.000120882054,0.000091678,0.00019960462,0.0004809245,0.00020681605,0.000100401114,0.00059001794,0.000011115484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002834156,0.00016803181,0.0019516823,0.000009594827,0.00015607273,0.000013579414,0.0015781265,0.0000059157483,0.9811101,0.00002384942,0.0017533463,0.01039554],"study_design_scores_gemma":[0.0016924914,0.00094865594,0.048883792,0.000060040747,0.000033982735,0.00071853114,0.0012379149,4.8332305e-7,0.9366637,0.00009908199,0.009556751,0.00010459616],"about_ca_topic_score_codex":0.00007588925,"about_ca_topic_score_gemma":0.0000042114902,"teacher_disagreement_score":0.04693211,"about_ca_system_score_codex":0.000063685526,"about_ca_system_score_gemma":0.00006519434,"threshold_uncertainty_score":0.49294272},"labels":[],"label_agreement":null},{"id":"W2046254358","doi":"10.1159/000141041","title":"Receptor-Interacting Protein-2 Deficiency Delays Macrophage Migration and Increases Intracellular Infection during Peritoneal Dialysis-Associated Peritonitis","year":2008,"lang":"en","type":"article","venue":"American Journal of Nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Robarts Clinical Trials; Western University","funders":"","keywords":"Downregulation and upregulation; Peritonitis; Peritoneal dialysis; Medicine; Intracellular; Macrophage; Microbiology; Immune system; Inflammation; Immunology; Peritoneum; Internal medicine; Biology; Pathology; In vitro; Cell biology","score_opus":0.005658117614957392,"score_gpt":0.20782059487734567,"score_spread":0.20216247726238828,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046254358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99793845,0.0012193838,0.00014984417,0.00030534918,0.00020823475,0.0001220976,0.0000031459672,0.00002647459,0.000027021602],"genre_scores_gemma":[0.99860126,0.0009317699,0.00017180691,0.000070290174,0.00009157813,0.0000089620435,0.000024455181,0.000015954105,0.00008392847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979876,0.00087845774,0.00060175045,0.00016829454,0.000060108352,0.0003037659],"domain_scores_gemma":[0.9985479,0.00018870941,0.0008980613,0.00011064101,0.00021931046,0.000035387315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037094913,0.00017127141,0.00043631208,0.0003073895,0.00045048707,0.000017621041,0.0000981332,0.00014233997,0.00014344066],"category_scores_gemma":[0.0003878478,0.00016033601,0.00012240392,0.00024212584,0.000510757,0.00033312623,0.000044130684,0.0004754967,0.000030959065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009619894,0.00012699378,0.019378271,0.000006780304,0.00016848497,0.000070992,0.0016123757,0.000020057902,0.9700052,0.000010182452,0.000054110307,0.0075845183],"study_design_scores_gemma":[0.003114645,0.0051188553,0.43505892,0.0001312709,0.00023201408,0.015320094,0.0016824129,0.00008730816,0.5310864,0.000025088944,0.007626743,0.00051623903],"about_ca_topic_score_codex":0.0014590414,"about_ca_topic_score_gemma":0.00009325724,"teacher_disagreement_score":0.43891886,"about_ca_system_score_codex":0.0001018423,"about_ca_system_score_gemma":0.00009252759,"threshold_uncertainty_score":0.65383124},"labels":[],"label_agreement":null},{"id":"W2046273714","doi":"10.1089/107999001459141","title":"Evaluation of Interleukin-4 Concentration by ELISA Is Influenced by the Consumption of IL-4 by Cultured Cells","year":2001,"lang":"en","type":"article","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Medical Research Council Canada; National Science Council","keywords":"ELISPOT; Immune system; Cytokine; Secretion; In vitro; Interleukin; Immunology; Context (archaeology); Interleukin 4; Biology; Chemistry; Cell biology; T cell; Endocrinology; Biochemistry","score_opus":0.05925896632868025,"score_gpt":0.3707852933583739,"score_spread":0.31152632702969363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046273714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9909699,0.0067571504,0.00036914047,0.00096384593,0.00023683503,0.00036787373,0.00005191158,0.0000042909483,0.0002790342],"genre_scores_gemma":[0.9967834,0.0022876912,0.000009632534,0.000046857487,0.000028184924,0.00000992224,0.000070001464,0.000010355685,0.0007539944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959731,0.0019854999,0.0010384829,0.00014607434,0.0005686365,0.00028820883],"domain_scores_gemma":[0.99582916,0.00034745046,0.0008100196,0.00023975497,0.0027471993,0.00002642935],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.006120615,0.0001394152,0.000328014,0.00017006957,0.00011219736,0.000027818773,0.00041816302,0.00021761504,0.0009746488],"category_scores_gemma":[0.00051515887,0.000094031646,0.00012804141,0.00023590696,0.00039578156,0.00032966898,0.00006158363,0.0006197749,0.00005512771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018266134,0.00014940841,0.00022037489,0.000018553257,0.00020964598,4.772874e-7,0.00118386,0.000013212441,0.85708666,0.000013347764,0.13241519,0.006862657],"study_design_scores_gemma":[0.0021948318,0.0012414379,0.00021008072,0.00019309396,0.00008508967,0.000056657165,0.0008383519,0.00010709019,0.97022355,0.000038427235,0.024734808,0.00007656445],"about_ca_topic_score_codex":0.0000832415,"about_ca_topic_score_gemma":0.000005076581,"teacher_disagreement_score":0.1131369,"about_ca_system_score_codex":0.0002564096,"about_ca_system_score_gemma":0.00021421556,"threshold_uncertainty_score":0.9999386},"labels":[],"label_agreement":null},{"id":"W2046409960","doi":"10.1016/j.molimm.2011.05.025","title":"Expression of duck CCL19 and CCL21 and CCR7 receptor in lymphoid and influenza-infected tissues","year":2011,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; American Lebanese Syrian Associated Charities","keywords":"CCL19; CCL21; Biology; Chemokine; Immune system; Chemokine receptor; C-C chemokine receptor type 7; Lymphatic system; Microbiology; Immunology; CXCL13; Virology","score_opus":0.009458144482362438,"score_gpt":0.21866375994935422,"score_spread":0.2092056154669918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046409960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9662707,0.032974213,0.000042847365,0.000047495603,0.00012561746,0.00019566237,0.0000030279334,0.000027807982,0.00031266728],"genre_scores_gemma":[0.99778515,0.0017639166,0.0002127165,0.000062664854,0.0000030570147,0.000018684013,0.000024000228,0.000015484833,0.00011432775],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987257,0.00038362443,0.0003515132,0.00026751403,0.000021099768,0.00025054681],"domain_scores_gemma":[0.999492,0.00007295323,0.00013811092,0.00023405821,0.0000488397,0.000014058162],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020099597,0.00017335737,0.00033438732,0.0002461233,0.00006387971,0.0000063879006,0.00009067457,0.0003687168,0.00013912313],"category_scores_gemma":[0.00013734166,0.00016265537,0.000025722118,0.00010455255,0.00042617618,0.0001187501,0.00018433678,0.0001750065,0.000025703026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006059323,0.00006312132,0.013658451,0.000030256846,0.000065504755,0.000009279284,0.0022646114,1.0771942e-7,0.9766062,0.0005732918,0.000021604614,0.0061016507],"study_design_scores_gemma":[0.0021618735,0.000333019,0.063764326,0.00007104532,0.000019051637,0.00015673343,0.000283629,0.0000011248061,0.9285491,0.00024979448,0.004255645,0.00015466349],"about_ca_topic_score_codex":0.0002798031,"about_ca_topic_score_gemma":0.000008827166,"teacher_disagreement_score":0.050105877,"about_ca_system_score_codex":0.000014690305,"about_ca_system_score_gemma":0.000028631754,"threshold_uncertainty_score":0.66328937},"labels":[],"label_agreement":null},{"id":"W2046901975","doi":"10.1046/j.1492-7535.2003.01255.x","title":"Pegylated Interferon-α2a Kinetics during Experimental HD: Impact of Permeability and Pore Size of Dialyzer","year":2003,"lang":"en","type":"article","venue":"Hemodialysis International","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"PEG ratio; Permeability (electromagnetism); Medicine; Chromatography; Surgery; Chemistry; Biomedical engineering; Membrane; Biochemistry","score_opus":0.008069183195762358,"score_gpt":0.25983596729309366,"score_spread":0.25176678409733133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2046901975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978343,0.00041781378,0.000044845732,0.000025478155,0.00023282078,0.00009340452,0.000019171384,0.000011816088,0.0013203217],"genre_scores_gemma":[0.99939007,0.00003031253,0.00007511192,0.000004819905,0.000013992201,0.000006656408,0.00007661775,0.000008503671,0.0003939225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900407,0.00017082356,0.0004527468,0.00017757944,0.00006327722,0.00013150433],"domain_scores_gemma":[0.9992852,0.00014983852,0.00021664558,0.00018218225,0.00015194435,0.00001414079],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020300731,0.00012720963,0.00027251412,0.00013166435,0.000035860357,0.0000075694325,0.00012058526,0.00012260843,0.0022035355],"category_scores_gemma":[0.00036283524,0.00011190762,0.00018761498,0.00008203984,0.00018147824,0.00010123378,0.00005751572,0.000097155586,0.000011431081],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000575527,0.00020986397,0.018047703,0.000009545658,0.0004309525,9.488533e-7,0.00093427766,0.000045594585,0.9792249,0.00021988038,0.00003116273,0.0002696218],"study_design_scores_gemma":[0.0011640631,0.00016476188,0.10480124,0.000016910863,0.000034018864,0.000032680295,0.00017074824,0.000029228284,0.8933238,0.00006048839,0.000111786634,0.000090300564],"about_ca_topic_score_codex":0.000050024355,"about_ca_topic_score_gemma":0.0000027997487,"teacher_disagreement_score":0.08675353,"about_ca_system_score_codex":0.00009350701,"about_ca_system_score_gemma":0.000037769707,"threshold_uncertainty_score":0.9987086},"labels":[],"label_agreement":null},{"id":"W2047579358","doi":"10.1038/nature05935","title":"Protective and therapeutic role for αB-crystallin in autoimmune demyelination","year":2007,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":508,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institutes of Health; Multiple Sclerosis Society; Multiple Sclerosis Society of Canada; National Multiple Sclerosis Society","keywords":"Experimental autoimmune encephalomyelitis; Multiple sclerosis; Neuroprotection; Immune system; Inflammation; Immunology; Cytokine; Autoimmune disease; Microglia; Biology; Myelin; Heat shock protein; Medicine; Central nervous system; Neuroscience; Antibody; Gene","score_opus":0.005309776632627024,"score_gpt":0.2534311481466882,"score_spread":0.2481213715140612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047579358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9692236,0.025490848,0.0028014241,0.00074229174,0.00025593708,0.0009273847,0.000004243457,0.000048477774,0.0005057482],"genre_scores_gemma":[0.99899286,0.00002755473,0.00009950588,0.0001702932,0.000019552901,0.000039061964,0.000043837124,0.000008620128,0.0005987179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994329,0.000063981504,0.0001644482,0.00013553714,0.00001941985,0.00018369015],"domain_scores_gemma":[0.9996395,0.00014887596,0.000060504208,0.00008243526,0.000064002765,0.000004687317],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00063841586,0.00008405372,0.000113053364,0.00013412061,0.000084006395,0.000006988877,0.000060341892,0.001097536,0.000020463249],"category_scores_gemma":[0.00010698938,0.00007306648,0.000029831495,0.00010354012,0.00003748879,0.000064827036,0.000015665411,0.0008190683,0.000011799353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083533506,0.00003276651,0.00023070282,0.000013561548,0.000033312128,7.694032e-7,0.00079414126,0.0000031016955,0.89901495,0.0032371779,0.000046718458,0.09575743],"study_design_scores_gemma":[0.0035002392,0.0003205474,0.26503468,0.0000617889,0.000025794452,0.000035577734,0.00080864405,0.00014177732,0.5994245,0.011305474,0.11908229,0.00025868855],"about_ca_topic_score_codex":0.00001733311,"about_ca_topic_score_gemma":0.000051,"teacher_disagreement_score":0.2995905,"about_ca_system_score_codex":0.000041629137,"about_ca_system_score_gemma":0.000025001616,"threshold_uncertainty_score":0.84652025},"labels":[],"label_agreement":null},{"id":"W2047580104","doi":"10.1097/mog.0b013e32835a68ea","title":"Nod-like receptors in intestinal host defense","year":2012,"lang":"en","type":"review","venue":"Current Opinion in Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Wilson Centre; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Biology; Pattern recognition receptor; Context (archaeology); Immune system; Immunology; Immunity; Microbiology; Gut flora; Dysbiosis; Host (biology); Genetics","score_opus":0.07129135058335291,"score_gpt":0.3392046427643076,"score_spread":0.2679132921809547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047580104","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00065358117,0.96708494,0.000050601357,0.00003746306,0.03132674,0.00073038327,0.000015998748,0.000046928468,0.000053358905],"genre_scores_gemma":[0.00027520795,0.9972728,0.000024189725,0.000017461689,0.00024076422,0.0003132719,0.001685368,0.000050767496,0.000120201505],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9949076,0.0019713915,0.001451622,0.0005746548,0.000051151725,0.0010435714],"domain_scores_gemma":[0.9985718,0.00026920866,0.0006054057,0.0004658218,0.00004599949,0.000041728556],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00078758335,0.00060187955,0.0016784872,0.001154657,0.000056579353,0.000013305894,0.0005002342,0.00069837575,0.00063347444],"category_scores_gemma":[0.00013144186,0.000548446,0.00035796894,0.00032170163,0.00024364739,0.00015211948,0.00028539886,0.0017082775,0.0016583591],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073698245,0.00070444343,0.013434216,0.008078291,0.00014322235,0.00000425722,0.0003114634,7.6941944e-7,0.000021627768,0.00018926189,0.00847146,0.96790403],"study_design_scores_gemma":[0.0011112175,0.00029079942,0.0009912157,0.008679804,0.00008297546,0.00037605167,0.00002501642,5.9213244e-7,0.0000023176503,0.0000058725673,0.9881774,0.0002567473],"about_ca_topic_score_codex":0.000022731923,"about_ca_topic_score_gemma":0.000019910032,"teacher_disagreement_score":0.9797059,"about_ca_system_score_codex":0.00029297787,"about_ca_system_score_gemma":0.00014092939,"threshold_uncertainty_score":0.99969673},"labels":[],"label_agreement":null},{"id":"W2047759625","doi":"10.1007/s00441-010-1031-3","title":"Modulation of B cell responses by Toll-like receptors","year":2010,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cell biology; Chemokine; Biology; Acquired immune system; Innate immune system; Immune system; Immunology; Receptor; Antigen; B-1 cell; Antibody; B cell; Toll-like receptor; Cytokine; Antigen-presenting cell; T cell","score_opus":0.05511761036375424,"score_gpt":0.36931823247249695,"score_spread":0.3142006221087427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047759625","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0038052378,0.99228454,0.000008271079,0.00002318625,0.00062590674,0.0007355732,0.000024752577,0.000022120901,0.002470403],"genre_scores_gemma":[0.0012212702,0.89276224,0.000026977907,0.0000019381828,0.000041801643,0.000057875994,0.0005959808,0.00003768842,0.10525424],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99664855,0.0017200976,0.00061024004,0.00042097835,0.0001263536,0.00047379648],"domain_scores_gemma":[0.9979596,0.0010645847,0.00025359422,0.00049286714,0.00018905899,0.0000402789],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017259007,0.0002824703,0.0009271905,0.0005360672,0.0002629479,0.00003126027,0.0003337124,0.0011483099,0.00069828756],"category_scores_gemma":[0.00014550339,0.00023043176,0.00013882041,0.0003374826,0.00040926272,0.000090926085,0.00019150788,0.0012798456,0.0008671144],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011395069,0.000084118394,0.0000021283638,0.003643043,0.000035845704,0.0000029956475,0.00013701626,2.832781e-8,0.21319193,0.000032019223,0.014471084,0.7682859],"study_design_scores_gemma":[0.00026796386,0.00021819971,0.0000031347608,0.00070714735,0.000060530085,0.000020666534,0.000038791826,3.922061e-7,0.103309415,0.000018451394,0.89516646,0.0001888228],"about_ca_topic_score_codex":0.00007065014,"about_ca_topic_score_gemma":0.0000031014204,"teacher_disagreement_score":0.8806954,"about_ca_system_score_codex":0.000041020154,"about_ca_system_score_gemma":0.00029304667,"threshold_uncertainty_score":0.99991083},"labels":[],"label_agreement":null},{"id":"W2047786245","doi":"10.1016/s0165-2478(01)00208-5","title":"Preparation and functional properties of polyclonal and monoclonal antibodies to murine MD-1","year":2001,"lang":"en","type":"article","venue":"Immunology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto Western Hospital","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Polyclonal antibodies; Molecular biology; Monoclonal antibody; Antibody; Antigen; Complementary DNA; In vitro; Biology; Transfection; Spleen; Peptide; Chemistry; Immunology; Cell culture; Gene; Biochemistry","score_opus":0.012475731683162917,"score_gpt":0.22465605678997178,"score_spread":0.21218032510680887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047786245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9875526,0.007858241,0.00016828254,0.0038437478,0.00028006395,0.00017388976,0.0000029546097,0.00003233288,0.000087874825],"genre_scores_gemma":[0.9982996,0.0005346143,0.00009783212,0.0005246862,0.000023988976,0.000021885247,0.00003133438,0.000007867676,0.00045819406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991963,0.000119410885,0.0002547821,0.00019909072,0.0000283796,0.0002020694],"domain_scores_gemma":[0.9996784,0.00005016739,0.00008150705,0.00013253576,0.00004698707,0.000010445536],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001362037,0.00013072128,0.00020033772,0.00018056373,0.00014100221,0.000009699104,0.00005732713,0.000119724486,0.0000841044],"category_scores_gemma":[0.000049008588,0.00011446806,0.000030246038,0.00007126174,0.00038457318,0.00015405852,0.00008541839,0.00012487792,0.000054318774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019225804,0.000028130818,0.008159218,0.000010819512,0.00018053349,0.0000025940942,0.00062410097,0.000009326896,0.98547626,0.00034866287,0.0010694155,0.0021683667],"study_design_scores_gemma":[0.0009933058,0.00027396507,0.20677345,0.00004001505,0.000029153,0.00048404196,0.0001486579,0.000006225388,0.7765417,0.000034032037,0.0145109445,0.00016450553],"about_ca_topic_score_codex":0.000078977486,"about_ca_topic_score_gemma":0.000008545664,"teacher_disagreement_score":0.20893455,"about_ca_system_score_codex":0.00001559083,"about_ca_system_score_gemma":0.000021951655,"threshold_uncertainty_score":0.4667872},"labels":[],"label_agreement":null},{"id":"W2047791002","doi":"10.1159/000233590","title":"Distribution of Radiolabelled Lymph Cells in Lymph Nodes and the Migratory Properties of Blood Lymphocytes in Sheep","year":2009,"lang":"en","type":"article","venue":"International Archives of Allergy and Applied Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Lymph; Lymph node; Lymphocyte; Lymph node stromal cell; Population; Biology; Pathology; Efferent; Immunology; Mesenteric lymph nodes; Medicine; Immune system; Anatomy; Afferent","score_opus":0.003995173874115185,"score_gpt":0.17878367815111287,"score_spread":0.17478850427699769,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2047791002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885291,0.010201051,0.00003672025,0.0002471759,0.00007228485,0.00013851373,0.0000103758675,0.0000053344074,0.0007594393],"genre_scores_gemma":[0.9952105,0.004598536,0.00003270723,0.000022919965,0.0000054538523,0.000015948865,0.000046003533,0.0000038915955,0.00006401374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998987,0.00016572012,0.0005227036,0.00015238431,0.00003335295,0.000138807],"domain_scores_gemma":[0.99936306,0.00025257023,0.00023205909,0.00011930707,0.000028078206,0.0000049438368],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018340019,0.00012117889,0.00034029185,0.00018810741,0.00003483561,0.000003274696,0.00020653363,0.000108513246,0.000011253337],"category_scores_gemma":[0.00004533844,0.00008897465,0.000047676127,0.0000677237,0.0009116014,0.0000501544,0.00008028465,0.000094349394,0.0000010519573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00548102,0.00019359657,0.0006316541,0.0000146384355,0.00035470625,6.6727955e-7,0.0017279618,0.00007036533,0.94646657,0.03256537,0.0000015049791,0.012491942],"study_design_scores_gemma":[0.0075516817,0.00006891361,0.16295545,0.00011726196,0.00001430954,0.000019883255,0.00046197177,0.00009129623,0.826383,0.0021026994,0.00014945587,0.00008410245],"about_ca_topic_score_codex":0.00020093237,"about_ca_topic_score_gemma":0.000012104897,"teacher_disagreement_score":0.16232379,"about_ca_system_score_codex":0.000011306593,"about_ca_system_score_gemma":0.00004878214,"threshold_uncertainty_score":0.3628281},"labels":[],"label_agreement":null},{"id":"W2048023526","doi":"10.1067/msy.2003.228","title":"Oxidant-induced priming of the macrophage involves activation of p38 mitogen-activated protein kinase through an Src-dependent pathway","year":2003,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"p38 mitogen-activated protein kinases; Proto-oncogene tyrosine-protein kinase Src; Phosphorylation; Kinase; Mitogen-activated protein kinase; Src family kinase; Cell biology; Medicine; Lipopolysaccharide; Tyrosine phosphorylation; Signal transduction; MAPK/ERK pathway; Immunology; Biology","score_opus":0.031084419578103074,"score_gpt":0.23712082418152314,"score_spread":0.20603640460342007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048023526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982523,0.00039319947,0.000063741594,0.000042212945,0.00053925073,0.00039755844,0.0000063417565,0.000024997295,0.0002804217],"genre_scores_gemma":[0.99930733,0.000023569355,0.000038726455,0.000022075055,0.000011751142,0.000028589904,0.000033464654,0.000017869808,0.00051663985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981096,0.0008876944,0.000498827,0.00019291973,0.000072224524,0.00023873884],"domain_scores_gemma":[0.9987547,0.00021787145,0.0004718753,0.00042145746,0.00012360116,0.000010531429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059573504,0.00015500582,0.00030315336,0.00010086099,0.00013885458,0.0000068358695,0.00013105506,0.00022883149,0.00014682351],"category_scores_gemma":[0.000530523,0.00011660142,0.0001425512,0.00023109093,0.00010000114,0.0003615843,0.000035961228,0.00019880677,0.000017321725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031873988,0.00013937082,0.00048358427,0.000055927096,0.00007876991,0.0000017200064,0.0010619109,0.000003003381,0.9938942,0.0006961493,0.000032198666,0.0032343827],"study_design_scores_gemma":[0.00036104495,0.000055373137,0.0033520118,0.00015819681,0.000012614117,0.000008155798,0.00046935145,5.997289e-7,0.9937649,0.00013386345,0.0015603923,0.0001235269],"about_ca_topic_score_codex":0.00016707163,"about_ca_topic_score_gemma":0.0000043685054,"teacher_disagreement_score":0.0031108558,"about_ca_system_score_codex":0.000040749233,"about_ca_system_score_gemma":0.00027160227,"threshold_uncertainty_score":0.4754868},"labels":[],"label_agreement":null},{"id":"W2048069351","doi":"10.1089/oli.2009.0210","title":"A Novel Class of Immune-Stimulatory CpG Oligodeoxynucleotides Unifies High Potency in Type I Interferon Induction with Preferred Structural Properties","year":2010,"lang":"en","type":"article","venue":"Oligonucleotides","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"Biology; CpG Oligodeoxynucleotide; Potency; CpG site; Interferon; Immunology; Immune system; Computational biology; Class (philosophy); Genetics; Gene; In vitro; Gene expression; Computer science; DNA methylation","score_opus":0.014245029299916471,"score_gpt":0.2173825332129617,"score_spread":0.20313750391304522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048069351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719864,0.0007657656,0.000018796884,0.00013724367,0.0009855839,0.0003540804,0.000007093878,0.0000913364,0.00044148677],"genre_scores_gemma":[0.99881834,0.00004630605,0.00035498824,0.000022612434,0.000038578513,0.000022209377,0.000048092814,0.000039099683,0.0006097872],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984624,0.00012212344,0.00063692103,0.0003217901,0.00007528535,0.00038150468],"domain_scores_gemma":[0.99891776,0.000064325184,0.0003059917,0.00045404976,0.00023659744,0.000021304693],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002843918,0.00029414395,0.00044552895,0.00035173012,0.00013160192,0.000025831934,0.0003059135,0.0003191657,0.00024685485],"category_scores_gemma":[0.00017629028,0.0002221121,0.000074179414,0.00029880652,0.0005103667,0.0004921639,0.00010564131,0.0006300781,0.000072939154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021640453,0.000084060885,0.0015955105,0.00007151546,0.00010584328,0.0000019623444,0.001097754,0.0002682308,0.9862024,0.0025445025,0.000024895844,0.00583927],"study_design_scores_gemma":[0.0014730203,0.0005905229,0.2013107,0.00016866397,0.00004411175,0.00007237523,0.00071310933,0.000081959464,0.79457194,0.00017368204,0.0004994241,0.00030049536],"about_ca_topic_score_codex":0.0014653073,"about_ca_topic_score_gemma":0.00048134473,"teacher_disagreement_score":0.19971518,"about_ca_system_score_codex":0.000044469554,"about_ca_system_score_gemma":0.00012808619,"threshold_uncertainty_score":0.9057468},"labels":[],"label_agreement":null},{"id":"W2048240027","doi":"10.1016/j.mib.2014.11.015","title":"Freund's adjuvant, NOD2 and mycobacteria","year":2014,"lang":"en","type":"review","venue":"Current Opinion in Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Muramyl dipeptide; NOD2; Peptidoglycan; Biology; Microbiology; Immunogenicity; Immunity; Mycobacterium tuberculosis; Innate immune system; Adjuvant; Acquired immune system; Mycobacterium; Tuberculosis; Immunology; Bacteria; Immune system; Genetics; Medicine","score_opus":0.0505940986587217,"score_gpt":0.35081718010177027,"score_spread":0.30022308144304855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048240027","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020398793,0.9824301,0.000029659643,0.000028964429,0.016336203,0.000718997,0.000116672374,0.00006047658,0.000074945885],"genre_scores_gemma":[0.000034089655,0.99343014,0.000014353873,0.000012521267,0.00027191537,0.00012690459,0.0058353273,0.000046583646,0.0002281616],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99602205,0.0014524992,0.0011798303,0.00072603015,0.0000142011495,0.00060538884],"domain_scores_gemma":[0.9984294,0.00041538762,0.00058304105,0.000498604,0.000046893743,0.000026649297],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005828664,0.00061670045,0.0021955736,0.0005747405,0.00011507921,0.000026233896,0.0004190318,0.0012329938,0.00038377423],"category_scores_gemma":[0.00013124663,0.0005110829,0.0002917189,0.00020768371,0.00034601105,0.00008081271,0.00031125642,0.0010279585,0.0019910103],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004378355,0.00006990761,0.000020731266,0.009388221,0.00012673257,5.2408495e-7,0.00008180368,4.7704425e-8,0.0033074627,0.0004984848,0.0108628115,0.97559947],"study_design_scores_gemma":[0.0007402159,0.000106020016,0.000037062877,0.009230146,0.00009700181,0.0004136619,0.00000766848,1.827986e-7,0.000061934115,0.000028811366,0.98877394,0.0005033329],"about_ca_topic_score_codex":0.000010925992,"about_ca_topic_score_gemma":0.0000027165697,"teacher_disagreement_score":0.9779112,"about_ca_system_score_codex":0.000105753104,"about_ca_system_score_gemma":0.00018178823,"threshold_uncertainty_score":0.9997341},"labels":[],"label_agreement":null},{"id":"W2048265246","doi":"10.1111/j.1365-3083.2008.02145.x","title":"Muramyldipeptide Modulates CXCL‐8 Release of BEAS‐2B Cells via NOD2","year":2008,"lang":"en","type":"article","venue":"Scandinavian Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"Deutsche Forschungsgemeinschaft","keywords":"NOD2; Chemistry; Cell biology; Biology; Biochemistry; Receptor; Innate immune system","score_opus":0.008262732995648617,"score_gpt":0.20403121987164113,"score_spread":0.19576848687599252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048265246","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985944,0.010943596,0.0006454768,0.00024387968,0.0015408134,0.00014149543,0.000008272673,0.000021450249,0.0005110444],"genre_scores_gemma":[0.99664074,0.0016241514,0.00027721218,0.000051767078,0.00006293855,0.000003011969,0.000020642685,0.000026610913,0.0012928981],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975735,0.00049175613,0.0011874886,0.00018920566,0.00008299121,0.00047506657],"domain_scores_gemma":[0.99780923,0.00020284213,0.001137656,0.00039547659,0.0004145438,0.00004023628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044608765,0.0002613597,0.0007480357,0.00051401736,0.00022824973,0.000006395163,0.0004942371,0.00040279946,0.00074109714],"category_scores_gemma":[0.00014770919,0.00022394788,0.00035448076,0.0002574319,0.00072997005,0.00029903097,0.00008197272,0.00066150783,0.0003205684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018553821,0.00017283832,0.0018157843,0.000018163219,0.0005674702,0.00016681776,0.000892137,0.000052161082,0.98536325,0.00014954865,0.0011361324,0.0078103137],"study_design_scores_gemma":[0.0030321754,0.0014941035,0.03213494,0.00016851777,0.00009761684,0.0057470016,0.00031338778,0.0000070358597,0.94956714,0.00033499493,0.006858149,0.00024492154],"about_ca_topic_score_codex":0.00008628042,"about_ca_topic_score_gemma":0.0000021464093,"teacher_disagreement_score":0.035796095,"about_ca_system_score_codex":0.00008887635,"about_ca_system_score_gemma":0.00018127113,"threshold_uncertainty_score":0.9132329},"labels":[],"label_agreement":null},{"id":"W2048481002","doi":"10.1016/j.vetimm.2012.01.001","title":"Interferon-gamma and B-cell Activating Factor (BAFF) promote bovine B cell activation independent of TLR9 and T-cell signaling","year":2012,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"B-cell activating factor; TLR9; CD14; Biology; B cell; Peripheral blood mononuclear cell; Cytokine; CpG Oligodeoxynucleotide; Immunology; Population; T cell; Cell biology; Molecular biology; Naive B cell; Polyclonal B cell response; Antigen-presenting cell; Immune system; Antibody; Medicine; DNA methylation; Gene expression","score_opus":0.016520694476536396,"score_gpt":0.23452148429345332,"score_spread":0.21800078981691692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048481002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9780832,0.020062914,0.00027870908,0.000092475595,0.00057471823,0.00042942347,0.000014798218,0.000063979875,0.00039978037],"genre_scores_gemma":[0.99735516,0.0015069401,0.0003314531,0.000058141883,0.000034252098,0.00004136071,0.000082640305,0.000042774915,0.0005472523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997189,0.0008424603,0.00073688646,0.00047512352,0.000050023642,0.0007065206],"domain_scores_gemma":[0.9985495,0.00036346394,0.0005657036,0.00038985218,0.00009092194,0.0000405395],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000621107,0.00044248113,0.00066251383,0.00037803978,0.00037202748,0.000023065319,0.00020857783,0.0007558094,0.0001480994],"category_scores_gemma":[0.00008585087,0.00042455047,0.00007277502,0.00012864088,0.0006523817,0.0006615802,0.0005278137,0.00075210555,0.000035992176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00256871,0.00031513002,0.002371797,0.0001810963,0.000096265845,0.000011304583,0.0047362596,3.6960796e-7,0.9756826,0.000058619593,0.000010209549,0.013967639],"study_design_scores_gemma":[0.0030021043,0.0045753038,0.038417034,0.00007439179,0.000047905552,0.0014731461,0.0014876663,0.000005756988,0.947809,0.0000388316,0.0026668934,0.0004019736],"about_ca_topic_score_codex":0.000046907204,"about_ca_topic_score_gemma":4.149131e-7,"teacher_disagreement_score":0.036045235,"about_ca_system_score_codex":0.000045918125,"about_ca_system_score_gemma":0.00005012295,"threshold_uncertainty_score":0.99982065},"labels":[],"label_agreement":null},{"id":"W2048552397","doi":"10.1016/j.cytogfr.2014.03.002","title":"The 14th International TNF Conference, Québec City, Canada – Des Progrės Récents aux Défis Futurs (Recent Advances toward Future Challenges)","year":2014,"lang":"fr","type":"editorial","venue":"Cytokine & Growth Factor Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Anticipation (artificial intelligence); Political science; Library science; Environmental ethics; Philosophy","score_opus":0.03256511859089562,"score_gpt":0.28117520963496656,"score_spread":0.24861009104407095,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048552397","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012761479,0.5533067,0.000053352018,0.01249291,0.4296292,0.0014286551,0.00038416407,0.000056071018,0.0013727957],"genre_scores_gemma":[0.0028288278,0.8448544,0.00003815119,0.00021098205,0.14306517,0.00039273142,0.0020072937,0.00008357674,0.006518873],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926112,0.0024152992,0.002076143,0.0010799426,0.00052613026,0.0012912835],"domain_scores_gemma":[0.9942721,0.001078253,0.001858347,0.00095662894,0.0016579947,0.00017667902],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow"],"category_scores_codex":[0.0013741244,0.0013145102,0.0019550845,0.00016814994,0.0011306591,0.00020496215,0.002282788,0.0014282536,0.0022548833],"category_scores_gemma":[0.0030846167,0.00089879107,0.0005877662,0.00025243376,0.00082684343,0.00050446636,0.0004928768,0.0021745395,0.00055129925],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058911875,0.000112884525,0.00029613063,0.0009811951,0.00061862817,0.000010430328,0.0011720858,1.9638206e-7,0.00031868543,0.0014810065,0.39602557,0.5983941],"study_design_scores_gemma":[0.0014415742,0.00034393725,0.0018254075,0.0010821399,0.00024218798,0.00003611745,0.0004270751,0.0000016179671,0.0012481334,0.00013056805,0.992312,0.0009092213],"about_ca_topic_score_codex":0.08949161,"about_ca_topic_score_gemma":0.6423858,"teacher_disagreement_score":0.5974848,"about_ca_system_score_codex":0.002536957,"about_ca_system_score_gemma":0.0074835704,"threshold_uncertainty_score":0.99996066},"labels":[],"label_agreement":null},{"id":"W2048625993","doi":"10.1016/j.toxlet.2008.01.006","title":"Interleukin-8 induction by the environmental contaminant benzo(a)pyrene is aryl hydrocarbon receptor-dependent and leads to lung inflammation","year":2008,"lang":"en","type":"article","venue":"Toxicology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Saskatoon Medical Imaging","funders":"Medical Center, University of Rochester; Région Bretagne; Agence Française de Sécurité Sanitaire de l'Environnement et du Travail; Fondation de France; Ligue Contre le Cancer","keywords":"Aryl hydrocarbon receptor; Bronchoalveolar lavage; Inflammation; Benzo(a)pyrene; Chromatin immunoprecipitation; Chemistry; Receptor; Alveolar macrophage; Immunology; Biology; Carcinogen; Cell biology; Lung; Gene expression; Transcription factor; Internal medicine; Biochemistry; Macrophage; Promoter; Medicine; Gene; In vitro","score_opus":0.006831292184513833,"score_gpt":0.20139228209869975,"score_spread":0.1945609899141859,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048625993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98431134,0.0007792595,0.00017249287,0.013485389,0.000675851,0.00045562306,0.00001117494,0.000045771412,0.00006307037],"genre_scores_gemma":[0.9949142,0.00020512703,0.000014987678,0.0034268296,0.000072590665,0.000080194135,0.00013926113,0.000018144387,0.0011286713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986691,0.00024483877,0.00035898382,0.000323748,0.000059687638,0.00034363722],"domain_scores_gemma":[0.99945945,0.00010197252,0.0001505818,0.00025175136,0.000009483938,0.000026792643],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027654305,0.00021175548,0.00023174721,0.00013327292,0.00039145275,0.000013071396,0.00017543272,0.0002727456,0.00034461904],"category_scores_gemma":[0.000028727784,0.00017236189,0.00005317741,0.00007121221,0.00034568674,0.00017475532,0.00010673549,0.00034815544,0.00045178004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028653265,0.000030520314,0.0033733936,0.000004058312,0.00008428697,0.0000052805826,0.0027164961,0.0000075107628,0.965539,0.000020603564,0.023727473,0.00420484],"study_design_scores_gemma":[0.0009768803,0.0003214534,0.022546552,0.00001302289,0.0000372528,0.0003455157,0.00021454915,0.0000135102255,0.9511251,0.0000042198385,0.024187285,0.000214685],"about_ca_topic_score_codex":0.00004971985,"about_ca_topic_score_gemma":0.000010626674,"teacher_disagreement_score":0.019173158,"about_ca_system_score_codex":0.00018725688,"about_ca_system_score_gemma":0.0000188128,"threshold_uncertainty_score":0.7028714},"labels":[],"label_agreement":null},{"id":"W2048862104","doi":"10.1111/j.1574-695x.2001.tb00535.x","title":"CpG ODN can re-direct the Th bias of established Th2 immune responses in adult and young mice","year":2001,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":103,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Honeywell (Canada)","funders":"","keywords":"HBsAg; CpG Oligodeoxynucleotide; Immune system; Immunology; Alum; Biology; Antigen; CTL*; Antibody; CpG site; TLR9; Adjuvant; Immunization; Virology; Hepatitis B virus; Chemistry; Virus; DNA methylation; CD8","score_opus":0.011802078623497617,"score_gpt":0.23804181415410852,"score_spread":0.2262397355306109,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2048862104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9689213,0.020066172,0.000023096385,0.0071778474,0.0018329168,0.0005081082,0.000044851524,0.000094359224,0.0013313637],"genre_scores_gemma":[0.99000543,0.0060368273,0.000027836086,0.00077311666,0.000052865482,0.00010262493,0.00028011814,0.000037346545,0.0026838495],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9936575,0.0031586115,0.0014338737,0.00065948226,0.00006929989,0.0010211954],"domain_scores_gemma":[0.9962097,0.0021818846,0.00054257555,0.0007985418,0.0002232609,0.000044078177],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0024796382,0.00046105208,0.0010845027,0.00052606,0.00031163942,0.000018601215,0.0009641193,0.0015115773,0.0012434666],"category_scores_gemma":[0.0043239174,0.0003278029,0.00018548993,0.00058785465,0.0029667432,0.00013281914,0.00047344586,0.0014221324,0.00015533077],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034932056,0.00019833121,0.011197585,0.000021970385,0.0004549732,0.000080208,0.0020702675,8.280321e-7,0.9712485,0.0008583372,0.0017002992,0.008675467],"study_design_scores_gemma":[0.012879894,0.002050681,0.22210845,0.000615292,0.00024068677,0.009851985,0.0059821787,0.000017545737,0.5948838,0.0005174139,0.14964467,0.0012074327],"about_ca_topic_score_codex":0.0044554453,"about_ca_topic_score_gemma":0.0023819394,"teacher_disagreement_score":0.37636477,"about_ca_system_score_codex":0.00009711564,"about_ca_system_score_gemma":0.0004288939,"threshold_uncertainty_score":0.9999174},"labels":[],"label_agreement":null},{"id":"W2049000073","doi":"10.1111/j.1462-5822.2007.01052.x","title":"Toll-like receptor 2 plays a critical role in maintaining mucosal integrity during Citrobacter rodentium-induced colitis","year":2007,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":171,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Children's Hospital; University of British Columbia","funders":"National Institutes of Health; Michael Smith Health Research BC; AstraZeneca; Canadian Association of Gastroenterology; Canadian Institutes of Health Research; CH.I.L.D. Foundation","keywords":"Citrobacter rodentium; TLR2; Biology; Colitis; Microbiology; Intestinal mucosa; Immunology; Immune system; Citrobacter; Pathogen; Inflammation; Toll-like receptor; Innate immune system; Medicine; Enterobacteriaceae; Internal medicine","score_opus":0.009294170018071146,"score_gpt":0.23655967870946035,"score_spread":0.2272655086913892,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049000073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99532855,0.0010669208,0.00041112077,0.00027223316,0.001767779,0.00032796166,0.000026029478,0.00010675309,0.00069264055],"genre_scores_gemma":[0.99784434,0.000027101916,0.00018968483,0.0001748722,0.00011571061,0.000023626257,0.00058960426,0.000037297003,0.0009977878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967246,0.0006522057,0.000814805,0.0005928278,0.00002791372,0.0011876377],"domain_scores_gemma":[0.9989183,0.00038311165,0.00014229707,0.00039634242,0.00010770007,0.000052272106],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012310554,0.00034612024,0.0005418173,0.00044043415,0.0002474621,0.000028416105,0.0003562726,0.0009885066,0.0015448872],"category_scores_gemma":[0.00030107002,0.0003540649,0.00017475965,0.00022448001,0.00030967273,0.00017408821,0.00022065104,0.0011656351,0.0014665868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012560958,0.00013231831,0.0024736435,0.000026479674,0.00007162138,0.00010644602,0.00073413097,8.4864695e-7,0.99342936,0.0008870611,0.00028193777,0.000600073],"study_design_scores_gemma":[0.0019152308,0.00018533482,0.011792928,0.00007057814,0.00002513108,0.0005573975,0.00096043135,0.0000029296264,0.9716246,0.00010110713,0.012368811,0.0003954889],"about_ca_topic_score_codex":0.00017420448,"about_ca_topic_score_gemma":0.00021126175,"teacher_disagreement_score":0.021804713,"about_ca_system_score_codex":0.00027514575,"about_ca_system_score_gemma":0.00010905291,"threshold_uncertainty_score":0.99989116},"labels":[],"label_agreement":null},{"id":"W2049023198","doi":"10.1152/japplphysiol.00411.2010","title":"Ethyl gallate, a scavenger of hydrogen peroxide that inhibits lysozyme-induced hydrogen peroxide signaling in vitro, reverses hypotension in canine septic shock","year":2010,"lang":"en","type":"article","venue":"Journal of Applied Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Hydrogen peroxide; Lysozyme; Scavenger; Chemistry; In vitro; Propyl gallate; Septic shock; Gallate; Peroxide; Pharmacology; Biochemistry; Medicine; Sepsis; Internal medicine; Radical; Antioxidant; Nuclear chemistry; Organic chemistry","score_opus":0.011742179945551871,"score_gpt":0.22312713416114133,"score_spread":0.21138495421558945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049023198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986992,0.00035918888,0.0000018041652,0.00014421514,0.0002977686,0.00027411437,0.0000039875135,0.0000123815025,0.00020732591],"genre_scores_gemma":[0.99941033,0.00009160503,0.00016090131,0.00013261639,0.0000785299,0.000010774158,0.000029422483,0.000032022683,0.000053772823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977109,0.00030268592,0.0011091529,0.00029307144,0.000099626086,0.0004846085],"domain_scores_gemma":[0.99831665,0.00032119962,0.00087243144,0.0003003818,0.00014757832,0.000041763295],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009179986,0.00029568962,0.0009424572,0.00062323455,0.00007175891,0.000006015795,0.00031568285,0.00062276534,0.00018117196],"category_scores_gemma":[0.0001252111,0.00025534592,0.00021386103,0.00029494523,0.00015919287,0.00016382047,0.00011171392,0.0012815021,0.000056919936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037055667,0.00016609186,0.00009683133,0.0000325085,0.0001384338,0.000024604084,0.0011000917,0.0005545596,0.9932387,0.000055668475,0.00004464255,0.00084229483],"study_design_scores_gemma":[0.0027746428,0.00021470117,0.0058319867,0.00009950451,0.000052258165,0.00021007104,0.00046654625,0.00003295029,0.98936653,0.0004566351,0.00026631574,0.00022788078],"about_ca_topic_score_codex":0.00011850968,"about_ca_topic_score_gemma":0.000071981776,"teacher_disagreement_score":0.005735155,"about_ca_system_score_codex":0.000090003225,"about_ca_system_score_gemma":0.00021828843,"threshold_uncertainty_score":0.99998987},"labels":[],"label_agreement":null},{"id":"W2049106125","doi":"10.1016/s0889-1591(02)00055-7","title":"Molecular insights on the cerebral innate immune system","year":2003,"lang":"en","type":"review","venue":"Brain Behavior and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":418,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Wilfrid Laurier University","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Circumventricular organs; Immune system; Biology; TLR4; CD14; TLR2; Immunology; Pattern recognition receptor; Microglia; Choroid plexus; Toll-like receptor; Acquired immune system; Neuroscience; Inflammation; Central nervous system","score_opus":0.029174649007070008,"score_gpt":0.27945515805273263,"score_spread":0.2502805090456626,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049106125","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.020447766,0.975089,0.000004483819,0.000052185598,0.00079200097,0.0014007745,0.000029521694,0.00009677183,0.0020874538],"genre_scores_gemma":[0.014616875,0.98160535,0.0000036556512,0.00012366487,0.000021680074,0.00051040546,0.00062423496,0.00008566716,0.0024084854],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99466527,0.003561663,0.00085840444,0.00039102588,0.000075650096,0.0004480009],"domain_scores_gemma":[0.99769217,0.000583451,0.00046614135,0.0011535228,0.00007663231,0.000028086819],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008563639,0.00064166565,0.0013510613,0.0002803527,0.00076797593,0.000079074984,0.0005785848,0.0008945644,0.00016592155],"category_scores_gemma":[0.00014571093,0.00040377525,0.00051041145,0.00031129897,0.0003123104,0.000100034624,0.00020574099,0.0015370111,0.0006594282],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011694324,0.00039307668,0.000005308061,0.003981671,0.00080985733,0.00008405188,0.0006846808,1.6456404e-7,0.00868928,0.039524965,0.00159159,0.94411844],"study_design_scores_gemma":[0.0004822403,0.00018386937,0.00012852857,0.0033163165,0.00073167676,0.00040582407,0.00025573373,1.4467626e-7,0.0033453365,0.0000107882815,0.99063784,0.00050167704],"about_ca_topic_score_codex":0.000086855434,"about_ca_topic_score_gemma":0.0000015765911,"teacher_disagreement_score":0.9890463,"about_ca_system_score_codex":0.00013196583,"about_ca_system_score_gemma":0.00017698162,"threshold_uncertainty_score":0.9998414},"labels":[],"label_agreement":null},{"id":"W2049122310","doi":"10.1016/j.dci.2006.05.001","title":"Identification and characterization of functional CD154 (CD40 ligand) in the Pekin duck","year":2006,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heritage Medical Research Clinic; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; CD154; Open reading frame; Molecular biology; Gene; Splenocyte; Immune system; Peptide sequence; CD40; Biochemistry; Immunology; In vitro; Cytotoxic T cell","score_opus":0.016886215711624693,"score_gpt":0.2335686720251489,"score_spread":0.2166824563135242,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049122310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997507,0.0006853704,0.00028115435,0.00029109902,0.00027348418,0.00029480344,0.0000075041044,0.000016515127,0.00064311567],"genre_scores_gemma":[0.9980605,0.00005356753,0.000020956315,0.00004448866,0.000013762015,0.000058061985,0.0007519354,0.0000053028607,0.0009913943],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987195,0.00034894567,0.000512789,0.0001956423,0.00004337719,0.00017975928],"domain_scores_gemma":[0.99945563,0.00012616218,0.00022589632,0.00011379441,0.00007519285,0.0000033312158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032756507,0.00013912862,0.00023330425,0.00019530569,0.00015830743,0.000016018523,0.00013553098,0.00013227994,0.00010183581],"category_scores_gemma":[0.000015276873,0.00011240087,0.000030458055,0.00022341161,0.00028748476,0.00019035126,0.00004917267,0.00017297275,0.00017806907],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029112372,0.00011012219,0.005815049,0.0000054838774,0.000053522384,9.840346e-7,0.0025703968,0.0000020071716,0.9861363,0.004111511,0.00019655979,0.00070695067],"study_design_scores_gemma":[0.00058940495,0.000039161256,0.5807446,0.000010493099,0.0000061371866,0.00006518997,0.0008944199,0.0000051706106,0.41421056,0.00015051466,0.0032077616,0.00007658101],"about_ca_topic_score_codex":0.00008317676,"about_ca_topic_score_gemma":0.000055825873,"teacher_disagreement_score":0.5749296,"about_ca_system_score_codex":0.000051051993,"about_ca_system_score_gemma":0.00006441678,"threshold_uncertainty_score":0.45835742},"labels":[],"label_agreement":null},{"id":"W2049134238","doi":"10.1186/1756-0500-5-616","title":"Toll-like receptor ligands induce the expression of interferon-gamma and interleukin-17 in chicken CD4+ T cells","year":2012,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Poultry Industry Council","keywords":"TLR2; TLR3; TLR9; Biology; Receptor; Cytokine; Toll-like receptor; Cell biology; TLR4; Effector; Interferon; Molecular biology; Innate immune system; Signal transduction; Immunology; Gene expression; Gene; Biochemistry","score_opus":0.08304959071086042,"score_gpt":0.3461564331685284,"score_spread":0.26310684245766797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049134238","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994886,0.0036227086,0.0000356762,0.0002746242,0.00034249877,0.00032637757,0.000004629671,0.000013268923,0.00049424963],"genre_scores_gemma":[0.9975703,0.0003163139,0.000053230517,0.000017889048,0.000063332795,0.000044929442,0.000021185393,0.000012821869,0.0019000447],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804354,0.0008551028,0.0003351151,0.00018151017,0.00009406197,0.00049067085],"domain_scores_gemma":[0.9978204,0.001621986,0.00008414664,0.00035083728,0.00009489601,0.000027782176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002573824,0.00012382859,0.00021255935,0.00027620856,0.0001527392,0.000023654886,0.00031462175,0.00023117803,0.00029733105],"category_scores_gemma":[0.000644811,0.00008079046,0.000047816608,0.00020344456,0.0003814214,0.00025235125,0.0003600376,0.000604007,0.00019891205],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008618111,0.00008246733,0.008705409,0.00003662891,0.000014643929,3.31353e-7,0.0037164805,0.0000010676868,0.9802091,0.00008590143,0.003379256,0.0029069125],"study_design_scores_gemma":[0.0005950576,0.00023002693,0.0143382875,0.00018217032,0.000003498023,0.000007780481,0.0012327621,0.0000045035285,0.97086215,0.000034701523,0.012421199,0.00008786401],"about_ca_topic_score_codex":0.0001683083,"about_ca_topic_score_gemma":0.00005128344,"teacher_disagreement_score":0.0093469415,"about_ca_system_score_codex":0.000041091185,"about_ca_system_score_gemma":0.000077130426,"threshold_uncertainty_score":0.32945395},"labels":[],"label_agreement":null},{"id":"W2049350743","doi":"10.1016/j.dci.2014.08.011","title":"Toll-like receptor 2 ligand, lipoteichoic acid is inhibitory against infectious laryngotracheitis virus infection in vitro and in vivo","year":2014,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"Alberta Livestock and Meat Agency; Canadian Food Inspection Agency; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council; University of Calgary; North Carolina State University","keywords":"Lipoteichoic acid; Biology; Innate immune system; In vivo; Toll-like receptor; Immune system; In vitro; Receptor; Virus; Microbiology; Pathogen-associated molecular pattern; Virology; Immunology; Macrophage; Pattern recognition receptor; Staphylococcus aureus; Biochemistry; Bacteria","score_opus":0.01047743074338502,"score_gpt":0.23536577954456633,"score_spread":0.2248883488011813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049350743","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939611,0.0023560973,0.0000593581,0.00010862552,0.0009726073,0.00043444906,0.00001221677,0.0000828338,0.0020127033],"genre_scores_gemma":[0.9975577,0.0010842127,0.000100729354,0.00040224724,0.000028634488,0.00014038372,0.0001684944,0.000021745525,0.0004958243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974377,0.0007612937,0.0007142362,0.00049849716,0.00005248774,0.00053577666],"domain_scores_gemma":[0.9993175,0.00019820847,0.00021060267,0.00018704988,0.00006195335,0.000024687302],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044258946,0.00037200848,0.00064908335,0.00066825014,0.00023030274,0.000030783634,0.0001454639,0.00049397023,0.00018416588],"category_scores_gemma":[0.00006931649,0.00039353117,0.00006668284,0.00039616294,0.00035407246,0.0003881198,0.00017716251,0.0006575461,0.0006958538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010054942,0.00017474248,0.015617677,0.000013122252,0.00013538529,0.0000056217236,0.004036762,0.00000488868,0.9707061,0.00003943086,0.00063341827,0.0076273717],"study_design_scores_gemma":[0.002882048,0.00018405082,0.09668738,0.000064574095,0.0000074982054,0.00011680483,0.00028884626,0.000014280283,0.85179526,0.000036397207,0.047556415,0.00036643332],"about_ca_topic_score_codex":0.00060843764,"about_ca_topic_score_gemma":0.0012762817,"teacher_disagreement_score":0.118910804,"about_ca_system_score_codex":0.0003621631,"about_ca_system_score_gemma":0.000120149474,"threshold_uncertainty_score":0.99985164},"labels":[],"label_agreement":null},{"id":"W2049441873","doi":"10.1051/vetres:2003012","title":"Functional analysis of recombinant bovine CD14","year":2003,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Lipopolysaccharide; CD14; Tumor necrosis factor alpha; CD18; Biology; Molecular biology; Recombinant DNA; Monoclonal antibody; Incubation; Interleukin; Cytokine; Antibody; Endocrinology; Immunology; Biochemistry; Flow cytometry; Gene","score_opus":0.13366817891931318,"score_gpt":0.36662784750870864,"score_spread":0.23295966858939546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049441873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916,0.0010218302,0.00010077624,0.00011330121,0.00036859725,0.00010747205,0.0000028973486,0.000015686379,0.006669443],"genre_scores_gemma":[0.9814365,0.00011182089,0.000034083474,0.000007761442,0.000006077965,0.000020705025,0.00010847192,0.000006672081,0.018267913],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981471,0.0010341716,0.0002539038,0.00018051831,0.00008458237,0.00029976413],"domain_scores_gemma":[0.9991004,0.00031697462,0.000049340266,0.0003090752,0.00021041653,0.000013829568],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016771182,0.00007400348,0.00021460382,0.00080889405,0.0001708321,0.0000075981648,0.00012343837,0.00011927063,0.0050617466],"category_scores_gemma":[0.0002876369,0.00006459507,0.000121781704,0.0010889786,0.00018146349,0.000075842196,0.00006063042,0.00024664184,0.00055274],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010976903,0.00015333573,0.0016225055,0.000016423724,0.0007929723,0.000012076055,0.00012551494,0.0000101961505,0.9847807,0.004107283,0.004836028,0.0024452214],"study_design_scores_gemma":[0.0014732677,0.004134594,0.11359264,0.00003120157,0.00020214742,0.000159187,0.00047059683,0.000056190944,0.36394036,0.00041888998,0.5152868,0.00023414323],"about_ca_topic_score_codex":0.000046493682,"about_ca_topic_score_gemma":0.0000025939255,"teacher_disagreement_score":0.6208404,"about_ca_system_score_codex":0.00003815289,"about_ca_system_score_gemma":0.00008580369,"threshold_uncertainty_score":0.99584776},"labels":[],"label_agreement":null},{"id":"W2049514847","doi":"10.1203/01.pdr.0000130473.30874.b6","title":"Labor Promotes Neonatal Neutrophil Survival and Lipopolysaccharide Responsiveness","year":2004,"lang":"en","type":"article","venue":"Pediatric Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Hospital for Sick Children; Health Research Board","keywords":"Neutrophilia; Lipopolysaccharide; Medicine; Integrin alpha M; Proinflammatory cytokine; Cord blood; Leukocytosis; Immune system; Immunology; Neonatal sepsis; Flow cytometry; Internal medicine; Inflammation; Endocrinology; Andrology; Sepsis","score_opus":0.03220574008469963,"score_gpt":0.3173614932718682,"score_spread":0.28515575318716857,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2049514847","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883254,0.008412295,0.000040534007,0.0021838688,0.00037702845,0.00033551155,0.000010317517,0.00006080911,0.00025419643],"genre_scores_gemma":[0.9961007,0.001942657,0.00005606067,0.000018107798,0.00024140795,0.000047785445,0.00003568503,0.000021040587,0.0015365168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99792176,0.0007214964,0.0002684623,0.00034527553,0.00015080764,0.00059220725],"domain_scores_gemma":[0.99864024,0.00062694185,0.000055124932,0.00031042864,0.00032431274,0.000042951382],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018146292,0.00014182553,0.00020765922,0.0005016959,0.00045032788,0.0000549304,0.00026016764,0.00022847955,0.0001378167],"category_scores_gemma":[0.00093675853,0.00012492249,0.000045788503,0.00047885135,0.00024683174,0.00021405017,0.0002324354,0.00062163465,0.00076890725],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034044827,0.00022046048,0.015241882,0.00016983892,0.000114940565,0.00015026232,0.0021455656,0.000017501414,0.934315,0.026363559,0.0007982739,0.017058231],"study_design_scores_gemma":[0.005918072,0.0012227691,0.13188249,0.00003926251,0.00006421142,0.00026373818,0.001392628,0.0000044658227,0.8260503,0.006246731,0.026308034,0.0006072919],"about_ca_topic_score_codex":0.00037612236,"about_ca_topic_score_gemma":0.000020316536,"teacher_disagreement_score":0.116640605,"about_ca_system_score_codex":0.00006736523,"about_ca_system_score_gemma":0.00041036788,"threshold_uncertainty_score":0.9883004},"labels":[],"label_agreement":null},{"id":"W2050207715","doi":"10.1016/j.ijdevneu.2008.01.001","title":"Sexually dimorphic effects of neonatal immune system activation with lipopolysaccharide on the behavioural response to a homotypic adult immune challenge","year":2008,"lang":"en","type":"article","venue":"International Journal of Developmental Neuroscience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopolysaccharide; Immune system; Sexual dimorphism; Saline; Physiology; Endocrinology; Internal medicine; Biology; Open field; Locomotor activity; Immunology; Medicine","score_opus":0.013757378955837351,"score_gpt":0.22275592432443458,"score_spread":0.20899854536859724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050207715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959744,0.000119872144,0.00061189686,0.0016776037,0.0013178338,0.00024178188,0.0000041724925,0.000015420705,0.000037015074],"genre_scores_gemma":[0.99934787,0.000041955347,0.00015550577,0.00019040098,0.000021351865,0.000013878594,0.0000035479552,0.000012270629,0.00021323787],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99835026,0.00029456202,0.00061447005,0.00017869442,0.00035951828,0.00020250637],"domain_scores_gemma":[0.99837625,0.00042771714,0.00057155296,0.0001429382,0.00045225702,0.000029285367],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005027921,0.00016934934,0.0002297742,0.00036522068,0.00022935309,0.000023529976,0.00076545717,0.00006574415,0.000014621831],"category_scores_gemma":[0.00065347826,0.000111358306,0.00008214038,0.00019886471,0.0002264334,0.0003504045,0.00011768116,0.0003086032,0.000032126325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0055514905,0.00012879091,0.00074769475,0.0000083667455,0.000056020035,0.00015165129,0.0017976061,0.000027238313,0.9894422,0.00040995594,0.000028388482,0.0016505556],"study_design_scores_gemma":[0.0011070161,0.0011283408,0.13495955,0.00038481245,0.000009395707,0.002496981,0.00047952338,0.0000056559566,0.8591138,0.0000037751252,0.00019626379,0.00011488078],"about_ca_topic_score_codex":0.000032834567,"about_ca_topic_score_gemma":0.0000019001646,"teacher_disagreement_score":0.13421185,"about_ca_system_score_codex":0.00016615317,"about_ca_system_score_gemma":0.00031617688,"threshold_uncertainty_score":0.45410597},"labels":[],"label_agreement":null},{"id":"W2050582911","doi":"10.1016/j.plefa.2005.05.014","title":"Lipoxins and aspirin-triggered lipoxins in neutrophil adhesion and signal transduction","year":2005,"lang":"en","type":"review","venue":"Prostaglandins Leukotrienes and Essential Fatty Acids","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Université de Montréal","funders":"","keywords":"Signal transduction; Cell biology; Inflammation; Lipoxin; Interleukin 8; Chemistry; Cell adhesion molecule; Immunology; Biology","score_opus":0.02089527947230304,"score_gpt":0.2783537122735898,"score_spread":0.2574584328012868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050582911","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.059332207,0.93888,0.000074610085,0.000108990316,0.00046231382,0.0009525065,0.00006822409,0.00006612177,0.00005498568],"genre_scores_gemma":[0.03754718,0.96106565,0.000035634508,0.000017311722,0.00024323733,0.00009700267,0.00065731665,0.000053767482,0.00028291118],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99725264,0.00041046625,0.0009078201,0.00078023406,0.00008322239,0.0005656082],"domain_scores_gemma":[0.99913967,0.00016104004,0.00031414506,0.00026469165,0.000048537266,0.00007194289],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044019544,0.0006439769,0.0014628413,0.0006111364,0.00037501985,0.00013033066,0.0001492876,0.00102628,0.00011652318],"category_scores_gemma":[0.000028483884,0.0005341014,0.00019699833,0.0003363843,0.00035661928,0.00038591967,0.00015751644,0.0007044557,0.000033725995],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048924185,0.0001184147,0.0002753429,0.003423547,0.0002560074,0.000021749736,0.0005596166,8.24255e-7,0.008972336,0.00030512427,0.000033562108,0.9855442],"study_design_scores_gemma":[0.002655925,0.00047936937,0.0007883128,0.003068141,0.0007990738,0.0007156196,0.00010852077,0.000012181341,0.005548234,0.000047343125,0.98497134,0.000805909],"about_ca_topic_score_codex":0.00010122537,"about_ca_topic_score_gemma":0.000067467365,"teacher_disagreement_score":0.9849378,"about_ca_system_score_codex":0.000077328725,"about_ca_system_score_gemma":0.00016494746,"threshold_uncertainty_score":0.99971104},"labels":[],"label_agreement":null},{"id":"W2050589157","doi":"10.1177/0961203309104391","title":"Long-term follow-up after non-myeloablative transplant of bone and marrow in BXSB mice","year":2009,"lang":"en","type":"article","venue":"Lupus","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta Hospital; Health Sciences Centre","funders":"George Washington University","keywords":"Medicine; Bone marrow; Mesenchymal stem cell; CD8; Stromal cell; FOXP3; Pathology; Flow cytometry; Immune system; Immunology","score_opus":0.005109485075661353,"score_gpt":0.21321507818450422,"score_spread":0.20810559310884286,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050589157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498314,0.0034934108,0.000095205076,0.00019829583,0.0005996541,0.00015977114,0.0000058315163,0.000010753811,0.0004539564],"genre_scores_gemma":[0.9952345,0.0002454283,0.000016288332,0.000075573655,0.000008288274,0.000008293936,0.000041697193,0.000005082349,0.0043648807],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993205,0.00008580356,0.00025314122,0.00013903638,0.000019850348,0.00018165624],"domain_scores_gemma":[0.999734,0.000052658084,0.00006761523,0.00011504548,0.000021610207,0.00000905959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013638654,0.0001071321,0.00023186956,0.0001203621,0.000027534374,0.000004604295,0.000047078018,0.00015882433,0.000100573714],"category_scores_gemma":[0.000011926478,0.00009470241,0.00004902031,0.00007653078,0.00006467838,0.00010809717,0.0000107034775,0.00012918717,0.000051363593],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026366794,0.000055283188,0.040578865,0.000029271074,0.00004115522,0.000044244705,0.0036611476,4.7336076e-7,0.9460271,0.00009033072,0.00017433078,0.0066610924],"study_design_scores_gemma":[0.0030560286,0.00030454493,0.59583986,0.00020124119,0.000038150032,0.0002081553,0.00007540077,0.000003908799,0.39934772,0.00015847532,0.00059841224,0.00016811409],"about_ca_topic_score_codex":0.00002910043,"about_ca_topic_score_gemma":0.00013671054,"teacher_disagreement_score":0.555261,"about_ca_system_score_codex":0.000014460626,"about_ca_system_score_gemma":0.000017038425,"threshold_uncertainty_score":0.3861852},"labels":[],"label_agreement":null},{"id":"W2050683823","doi":"10.1016/j.jtherbio.2010.07.005","title":"Bacterial endotoxin induced hypothermia in pregnant rats: Role of tumor necrosis factor-α","year":2010,"lang":"en","type":"article","venue":"Journal of Thermal Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Alberta Children's Hospital; University of Calgary","funders":"","keywords":"Hypothermia; Tumor necrosis factor alpha; Tumor necrosis factor α; Medicine; Necrosis; Physiology; Endocrinology; Internal medicine","score_opus":0.010427418906041848,"score_gpt":0.23398693066955786,"score_spread":0.22355951176351602,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050683823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776673,0.0004691417,0.0000018933653,0.00009311358,0.0012694908,0.00012662135,0.000011893164,0.000006298203,0.00025482004],"genre_scores_gemma":[0.9996787,0.000036664722,0.00005612623,0.000035264697,0.00010315039,0.0000038390012,0.000007816429,0.00001146242,0.00006701027],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984574,0.00041398554,0.0007332043,0.00010979613,0.000026316988,0.00025930157],"domain_scores_gemma":[0.9988107,0.00019289646,0.00069825334,0.00017588581,0.00010324594,0.00001901913],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004358404,0.00014359973,0.00044824014,0.00024442162,0.00003626471,0.0000065964473,0.00031802212,0.0003317259,0.0011287567],"category_scores_gemma":[0.00022869813,0.00010310216,0.0001500666,0.00008313434,0.00013710192,0.00013871123,0.00005428872,0.00058731495,0.000047394948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014976725,0.000111823116,0.0044896165,0.0000051575603,0.00009118154,0.0000052404566,0.0004422518,8.486604e-7,0.97783583,0.0001596015,0.000016118353,0.015344636],"study_design_scores_gemma":[0.0014810257,0.0006341412,0.04366074,0.000041713065,0.000014278969,0.00014637614,0.000081758495,0.000001257053,0.9494204,0.00015791762,0.0042611603,0.00009923375],"about_ca_topic_score_codex":0.00007145677,"about_ca_topic_score_gemma":0.000027546472,"teacher_disagreement_score":0.039171126,"about_ca_system_score_codex":0.00002264331,"about_ca_system_score_gemma":0.00014400887,"threshold_uncertainty_score":0.99978435},"labels":[],"label_agreement":null},{"id":"W2050812382","doi":"10.1097/ta.0b013e3181e65133","title":"Reducing Leukocyte Trafficking Preserves Hepatic Function After Sepsis","year":2010,"lang":"en","type":"article","venue":"The Journal of Trauma: Injury, Infection, and Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Care Foundation","funders":"","keywords":"Sepsis; Aspartate transaminase; Medicine; Intravital microscopy; Internal medicine; Endocrinology; Myeloperoxidase; Andrology; Inflammation; Immunology; Chemistry; Microcirculation; Enzyme; Biochemistry","score_opus":0.008863823796262655,"score_gpt":0.2644683511018208,"score_spread":0.25560452730555816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050812382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940009,0.0029624049,0.0003638882,0.0004268446,0.0018822993,0.00009168316,0.0000027339067,0.00002472737,0.00024450492],"genre_scores_gemma":[0.999352,0.00020501064,0.00002002507,0.000079021105,0.0002459297,0.000004939535,0.0000043153786,0.000012778479,0.00007597427],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99881196,0.00036709112,0.0004336065,0.00010260593,0.000069440815,0.00021529954],"domain_scores_gemma":[0.99897355,0.00031593375,0.00012271393,0.00016467647,0.00039063013,0.000032503176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068258675,0.00013899652,0.0002091325,0.0001376157,0.00041148296,0.000050556886,0.000095295945,0.00020272985,0.00032248217],"category_scores_gemma":[0.0003854768,0.00009451128,0.00012808132,0.00010249292,0.00026557763,0.00037681963,0.000027207556,0.00072773534,0.000019608007],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006560392,0.00024172316,0.018714404,0.00044334875,0.00042430667,0.000010532142,0.013200409,0.000053525622,0.8578213,0.001434363,0.0026858347,0.098409906],"study_design_scores_gemma":[0.002165044,0.003748932,0.4963234,0.0003551736,0.0014321929,0.0017768138,0.004698177,0.000039322542,0.45630425,0.0016534424,0.030945309,0.00055794534],"about_ca_topic_score_codex":0.00011021631,"about_ca_topic_score_gemma":0.000079885576,"teacher_disagreement_score":0.477609,"about_ca_system_score_codex":0.000028871473,"about_ca_system_score_gemma":0.000052040712,"threshold_uncertainty_score":0.3854058},"labels":[],"label_agreement":null},{"id":"W2050897729","doi":"10.1016/j.neuroscience.2007.01.004","title":"Innate immune receptor expression in normal brain aging","year":2007,"lang":"en","type":"article","venue":"Neuroscience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":175,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Innate immune system; Neuroscience; Immune system; Receptor; Biology; Immune receptor; Cell biology; Immunology; Genetics","score_opus":0.010365751385129286,"score_gpt":0.2544196301003393,"score_spread":0.24405387871521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050897729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99547005,0.00034706475,0.00084608386,0.0005621515,0.0011831723,0.00010306896,7.6491443e-7,0.000047238183,0.0014404164],"genre_scores_gemma":[0.9969938,0.000030773583,0.0000552624,0.0004964508,0.000013491801,0.0000037564632,0.0000061185415,0.0000062008967,0.0023941598],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989506,0.00013475565,0.00027229305,0.0002217059,0.000044259403,0.000376386],"domain_scores_gemma":[0.99957025,0.00012948072,0.00008050899,0.00018589465,0.00002107577,0.000012815443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010016027,0.00008951143,0.00010291394,0.00020410983,0.00016138464,0.000016088068,0.00024342873,0.000091711554,0.0000787978],"category_scores_gemma":[0.00035528885,0.00008097985,0.000029727822,0.0003514842,0.00014557723,0.00031111814,0.000097431395,0.00024713489,0.00020895395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000918679,0.000024995734,0.0021587694,0.0000027634308,3.1993932e-7,0.00000680403,0.00032462325,0.0000088914185,0.98968405,0.000088725545,0.00036858028,0.007239594],"study_design_scores_gemma":[0.00037357595,0.00005446183,0.12319036,0.000026896896,5.236155e-7,0.000021132862,0.000055982564,0.000008462136,0.8353856,0.000013746997,0.04078719,0.000082038896],"about_ca_topic_score_codex":0.000023026141,"about_ca_topic_score_gemma":0.000005666181,"teacher_disagreement_score":0.15429844,"about_ca_system_score_codex":0.000025731475,"about_ca_system_score_gemma":0.000032057786,"threshold_uncertainty_score":0.33022624},"labels":[],"label_agreement":null},{"id":"W2050940395","doi":"10.1097/01.ccm.0000129975.26905.77","title":"Delayed neutrophil apoptosis in sepsis is associated with maintenance of mitochondrial transmembrane potential and reduced caspase-9 activity*","year":2004,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":227,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Public Health; University Health Network","funders":"","keywords":"Pyrrolidine dithiocarbamate; Apoptosis; Lipopolysaccharide; Medicine; Caspase; Immunology; Tumor necrosis factor alpha; Caspase 3; Programmed cell death; Inflammation; NF-κB; Biology; Biochemistry","score_opus":0.008960113477398631,"score_gpt":0.251416315711512,"score_spread":0.24245620223411338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050940395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989909,0.0012421876,0.000574079,0.007517498,0.00033131667,0.00021245914,0.000025496498,0.00002406357,0.00016389193],"genre_scores_gemma":[0.99950385,0.0000655806,0.000046448662,0.00018939971,0.00004174664,0.000016038115,0.000069297595,0.000014416045,0.00005324935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998888,0.00017148648,0.000301075,0.0002526917,0.00007734563,0.00030940864],"domain_scores_gemma":[0.99934566,0.00019748055,0.000057861376,0.00016165272,0.00020337227,0.00003396406],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011761427,0.00016618648,0.000444725,0.00014445663,0.000075545286,0.0000041953804,0.00008295801,0.00024291521,0.000118131065],"category_scores_gemma":[0.00044056703,0.00012579732,0.000049060363,0.0002068901,0.0006777174,0.00009451346,0.000016899685,0.00029746056,0.0000046660966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025115896,0.00008477499,0.000029688996,0.000078244615,0.00007747125,0.00003843398,0.0024905428,0.000009648482,0.9928324,0.00036595514,0.000099909994,0.0013813272],"study_design_scores_gemma":[0.014389889,0.0027263649,0.007398668,0.00082648726,0.0003551282,0.00012220937,0.0030069384,0.000008973463,0.9704544,0.00031417448,0.000121735065,0.0002750229],"about_ca_topic_score_codex":0.00047510664,"about_ca_topic_score_gemma":0.00007208198,"teacher_disagreement_score":0.022378005,"about_ca_system_score_codex":0.00007582934,"about_ca_system_score_gemma":0.000086084015,"threshold_uncertainty_score":0.51298654},"labels":[],"label_agreement":null},{"id":"W2050965415","doi":"10.1016/j.vaccine.2014.03.014","title":"The adjuvant PCEP induces recruitment of myeloid and lymphoid cells at the injection site and draining lymph node","year":2014,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Bill and Melinda Gates Foundation","keywords":"Immune system; Biology; CCL19; Immunology; Lymphatic system; Adjuvant; Chemokine; Lymph; Chemokine receptor; Medicine; Pathology","score_opus":0.013493208882897994,"score_gpt":0.23042847737569172,"score_spread":0.21693526849279374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2050965415","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992405,0.0060148183,0.00003111448,0.00080744823,0.00027542925,0.00019175475,0.0000024354651,0.000014752372,0.00025722696],"genre_scores_gemma":[0.99693805,0.0012402126,0.0000090101685,0.000106477775,0.000028791328,0.000020115263,0.000017644103,0.0000071763593,0.0016325208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99917245,0.00030785514,0.00021616717,0.0001302359,0.000023636338,0.00014967397],"domain_scores_gemma":[0.9992072,0.00041584033,0.0001408984,0.00019282148,0.000034837318,0.000008397503],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071362563,0.00009716436,0.00014277764,0.00004178118,0.00045442858,0.000014224936,0.000069042035,0.00009127272,0.00003357654],"category_scores_gemma":[0.00008295034,0.00005262666,0.000024422561,0.000061355015,0.000047428344,0.000056728422,0.0001051438,0.00007807706,0.00004101715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003144193,0.000008861682,0.0024872643,0.000008688059,0.000048019454,1.3051651e-7,0.0013792093,0.000008409739,0.92451066,0.00013410485,0.00027431452,0.07082591],"study_design_scores_gemma":[0.0016266366,0.00019733144,0.07185447,0.000037265094,0.000043602155,0.000099065095,0.00049662654,0.00006656127,0.86464274,0.00007290866,0.06076355,0.000099236626],"about_ca_topic_score_codex":0.00011043571,"about_ca_topic_score_gemma":0.00003289816,"teacher_disagreement_score":0.07072668,"about_ca_system_score_codex":0.000025978556,"about_ca_system_score_gemma":0.00001589255,"threshold_uncertainty_score":0.3495143},"labels":[],"label_agreement":null},{"id":"W2051219195","doi":"10.1016/j.dci.2008.07.007","title":"Humoral and cellular factors of maternal immunity in swine","year":2008,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":265,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Immunity; Humoral immunity; Cellular immunity; Immunology; Biology; Immune system","score_opus":0.06336123879015336,"score_gpt":0.30890585900127826,"score_spread":0.2455446202111249,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051219195","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3197279,0.6789783,0.0000046013993,0.0000025445888,0.00032385826,0.00043474374,0.000020849368,0.000022271339,0.00048492948],"genre_scores_gemma":[0.07941121,0.9186803,0.000081836704,0.0000040958416,0.0000079562315,0.00006257013,0.001004006,0.000029035005,0.0007189825],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99658024,0.0010881681,0.001377995,0.0004173119,0.000049485665,0.00048681494],"domain_scores_gemma":[0.99860424,0.00037702534,0.00068199623,0.00027043262,0.000048450147,0.000017843546],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015864306,0.0006353139,0.0026711663,0.00073816936,0.00018285499,0.000010108467,0.00044856986,0.0006879112,0.00034955522],"category_scores_gemma":[0.000032007905,0.0005366444,0.00023622443,0.00033560852,0.0008647827,0.00013915064,0.00039703652,0.0009154588,0.00026374232],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017250569,0.0013159569,0.009313637,0.0053067766,0.008067084,0.00024359193,0.026308006,0.0000012634164,0.13750318,0.0017178049,0.00070562324,0.807792],"study_design_scores_gemma":[0.0016255919,0.00029741784,0.018808868,0.0029214146,0.00011833967,0.0009687894,0.0010699535,3.5569445e-7,0.07512988,0.000024911804,0.8982193,0.0008151686],"about_ca_topic_score_codex":0.0002491713,"about_ca_topic_score_gemma":0.000025011343,"teacher_disagreement_score":0.8975137,"about_ca_system_score_codex":0.00018961373,"about_ca_system_score_gemma":0.0004174798,"threshold_uncertainty_score":0.99970853},"labels":[],"label_agreement":null},{"id":"W2051325974","doi":"10.1016/j.cyto.2005.05.001","title":"Effect of pro-inflammatory cytokines on spontaneous apoptosis in leukocyte sub-sets within a whole blood culture","year":2005,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada","funders":"","keywords":"Apoptosis; Immunology; Cytokine; Tumor necrosis factor alpha; Immune system; Whole blood; Proinflammatory cytokine; Biology; Population; Inflammation; Medicine; Biochemistry","score_opus":0.005228415786726795,"score_gpt":0.22676834751977998,"score_spread":0.2215399317330532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051325974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969326,0.001208239,0.0000038024477,0.00018739577,0.00024792712,0.00056805514,0.000016588308,0.00008604442,0.00074930047],"genre_scores_gemma":[0.9980068,0.00007848995,0.00004261731,0.00007290359,0.00006775503,0.00007126743,0.00014840954,0.000028970157,0.0014827673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817634,0.0004699615,0.0005857157,0.0003212708,0.00007799125,0.00036871803],"domain_scores_gemma":[0.99906653,0.00019536939,0.00025511684,0.00039558604,0.00006508862,0.000022333452],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006553799,0.00030810598,0.0005075779,0.00027669492,0.00008943683,0.000011723567,0.00023777706,0.0003861209,0.0000996926],"category_scores_gemma":[0.00022180633,0.00024094495,0.00013624737,0.00022381102,0.0001299163,0.00015056174,0.000057968275,0.00041266595,0.0005147844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036190248,0.00014922637,0.00056783285,0.00010359981,0.0001168834,0.000053884025,0.0008906964,0.00022535046,0.98568404,0.00017664944,0.0006674077,0.007745407],"study_design_scores_gemma":[0.0036674137,0.0015509154,0.0016768997,0.00022366247,0.000080818165,0.00037677196,0.00003421608,0.00001713617,0.97750056,0.0000130564595,0.014620102,0.00023846423],"about_ca_topic_score_codex":0.000018827395,"about_ca_topic_score_gemma":0.00005235101,"teacher_disagreement_score":0.013952694,"about_ca_system_score_codex":0.00008262993,"about_ca_system_score_gemma":0.000060208607,"threshold_uncertainty_score":0.982545},"labels":[],"label_agreement":null},{"id":"W2051348897","doi":"10.1038/sj.thj.6200023","title":"Polymorphonuclear leukocytes released from the bone marrow by granulocyte colony-stimulating factor: intravascular behavior","year":2000,"lang":"en","type":"article","venue":"The Hematology Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Granulocytosis; Granulocyte colony-stimulating factor; Bone marrow; Granulocyte; Endocrinology; Leukocytosis; Internal medicine; Chemistry; Medicine; Immunology; Chemotherapy","score_opus":0.008466503363910326,"score_gpt":0.2163826994438737,"score_spread":0.20791619607996337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051348897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97798365,0.01816294,0.000056218272,0.0027262182,0.0005272492,0.00027168702,0.000023912678,0.00006453073,0.00018359142],"genre_scores_gemma":[0.99723214,0.0006861461,0.000043299973,0.0005751954,0.000090973204,0.000020659134,0.000074678916,0.000032629338,0.0012442931],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973371,0.0012019264,0.00062209636,0.00022387877,0.000091790724,0.0005231957],"domain_scores_gemma":[0.99825555,0.0008778706,0.00028903643,0.00047871761,0.00006294305,0.000035864323],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00058436394,0.00025816605,0.0004352146,0.00005086623,0.0013190153,0.00006872947,0.0005463834,0.00034739016,0.009573445],"category_scores_gemma":[0.00015746971,0.00015023517,0.00023124945,0.000111803136,0.00048219628,0.0001563296,0.00005557817,0.0010964223,0.0016513794],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019154523,0.00017772283,0.009112233,0.0000050542762,0.0007001,0.00014496574,0.002488224,0.000027696642,0.89551085,0.0002666549,0.047673102,0.04197795],"study_design_scores_gemma":[0.008861593,0.0006165742,0.082501486,0.00019520674,0.0009085186,0.021156767,0.0014464817,0.00019071203,0.6481196,0.00065072445,0.234364,0.0009883076],"about_ca_topic_score_codex":0.00032887634,"about_ca_topic_score_gemma":0.000017247754,"teacher_disagreement_score":0.24739122,"about_ca_system_score_codex":0.0000562738,"about_ca_system_score_gemma":0.00008318803,"threshold_uncertainty_score":0.9999811},"labels":[],"label_agreement":null},{"id":"W2051354044","doi":"10.1097/nen.0b013e3181492a7","title":"Th1 Polarization of CD4+ T Cells by Toll-Like Receptor 3-Activated Human Microglia","year":2007,"lang":"en","type":"article","venue":"Journal of Neuropathology & Experimental Neurology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal; McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Microglia; Biology; Cell biology; TLR2; Immunology; Major histocompatibility complex; Toll-like receptor; Immune system; Receptor; TLR4; TLR3; Innate immune system; Inflammation","score_opus":0.007316405074849299,"score_gpt":0.24773755013564872,"score_spread":0.24042114506079942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051354044","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99456525,0.0015457137,0.00024040144,0.00028829463,0.0029683162,0.00019416772,0.000011460329,0.000029678913,0.00015669006],"genre_scores_gemma":[0.9985258,0.000049204154,0.00007277693,0.00080170867,0.00007412635,0.000001743364,0.000049491486,0.00004225554,0.00038290914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968447,0.00089856546,0.0013501719,0.00030159325,0.00008542612,0.0005195341],"domain_scores_gemma":[0.99792665,0.00025567462,0.001307219,0.00027940012,0.00017835406,0.00005269189],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009339912,0.0002869327,0.00062322384,0.00042637618,0.00017444766,0.000008514934,0.00039472428,0.00048741023,0.00028444518],"category_scores_gemma":[0.00007429436,0.00026956352,0.00021155048,0.00018748206,0.0004763579,0.00022224605,0.00012003957,0.000766113,0.000057397094],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036525188,0.00053049996,0.0017725849,0.000006771556,0.00007022532,0.00025115153,0.0004296498,0.000002381091,0.9901766,0.00008137655,0.0026692005,0.0003570154],"study_design_scores_gemma":[0.0020407955,0.0044077947,0.0069055934,0.000008259244,0.000033770702,0.0023533592,0.00014205514,2.7328943e-7,0.9639117,0.000009315165,0.020020477,0.00016660389],"about_ca_topic_score_codex":0.000011166361,"about_ca_topic_score_gemma":0.0000012866346,"teacher_disagreement_score":0.026264923,"about_ca_system_score_codex":0.00003814285,"about_ca_system_score_gemma":0.000047540532,"threshold_uncertainty_score":0.9999757},"labels":[],"label_agreement":null},{"id":"W2051821508","doi":"10.1186/cc14058","title":"Immunomodulation and infection: identification of small molecule TLR3 blockers to combat deleterious inflammation in pneumonia","year":2014,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Children's Health Foundation; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa e Inovação do Estado de Santa Catarina; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Japan Society for the Promotion of Science; Russian Foundation for Basic Research; London Health Sciences Centre","keywords":"Medicine; TLR3; Immune system; Pneumonia; Inflammation; Immunology; Sepsis; Toll-like receptor; Cytokine; Innate immune system; Internal medicine","score_opus":0.008472333326248329,"score_gpt":0.2509146003455887,"score_spread":0.24244226701934038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2051821508","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955435,0.00039446584,0.0029569517,0.00052490644,0.00021045779,0.00020541987,0.0000029900293,0.000027563177,0.00013373804],"genre_scores_gemma":[0.99970174,0.000011482696,0.000077363824,0.000036084348,0.000016092923,0.000028451654,0.00009161309,0.00000843365,0.000028712539],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990496,0.00021892613,0.00038315105,0.00016848257,0.000031111795,0.0001487033],"domain_scores_gemma":[0.9994435,0.00012081081,0.000057208872,0.00017549034,0.00018711698,0.00001589446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000234431,0.00009317195,0.00015437763,0.0001736911,0.00007925029,0.000020845595,0.000055850654,0.00014936039,0.000016973714],"category_scores_gemma":[0.00051886804,0.000100058474,0.000031849624,0.00013129173,0.00008896095,0.00010872354,0.000038625432,0.00010747201,0.000057771536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095751915,0.000013932171,0.0029970042,0.000099222285,0.0000069580915,5.008636e-7,0.0012064362,0.000045325105,0.9718899,0.0022969404,0.000007930989,0.02134006],"study_design_scores_gemma":[0.00058503327,0.00025345382,0.2481144,0.00006544788,0.000024557903,0.000015030984,0.0003028587,0.00030306276,0.74887705,0.00026277336,0.0010520527,0.00014426303],"about_ca_topic_score_codex":0.000108031156,"about_ca_topic_score_gemma":0.000058373756,"teacher_disagreement_score":0.2451174,"about_ca_system_score_codex":0.000045886933,"about_ca_system_score_gemma":0.000017377228,"threshold_uncertainty_score":0.40802664},"labels":[],"label_agreement":null},{"id":"W2052169601","doi":"10.1155/2012/560817","title":"New Insights into the Immunological Changes in IL-10-Deficient Mice during the Course of Spontaneous Inflammation in the Gut Mucosa","year":2012,"lang":"en","type":"article","venue":"Clinical and Developmental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fundação de Amparo à Pesquisa do Estado de Minas Gerais; Conselho Nacional de Desenvolvimento Científico e Tecnológico","keywords":"Inflammation; Immunology; Intestinal mucosa; Biology; Pathology; Medicine; Internal medicine","score_opus":0.019176821495540328,"score_gpt":0.2734709304137074,"score_spread":0.25429410891816706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052169601","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9806465,0.015552361,0.0000066699895,0.0024794242,0.0005409731,0.00043080276,0.0000012176253,0.00001706339,0.0003249983],"genre_scores_gemma":[0.9967911,0.0022504344,0.00004586212,0.00020476816,0.000054002936,0.00005103691,0.00003242089,0.000008259227,0.00056210015],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9971686,0.0012586404,0.0008611517,0.00022791789,0.000059842307,0.00042387276],"domain_scores_gemma":[0.9978525,0.001579539,0.00023731658,0.00027462025,0.000040831903,0.000015165499],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015039372,0.00021216586,0.00037030838,0.000113548085,0.00028153617,0.000016462034,0.00047766397,0.0003939086,0.00018548017],"category_scores_gemma":[0.00040722513,0.000103076614,0.00007420453,0.0002765161,0.00084684393,0.00012792293,0.00031267316,0.0006775641,0.00017761598],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037104958,0.00064422406,0.029934093,0.00003284014,0.00036807207,0.000053646683,0.061165754,0.000004527596,0.7323987,0.0039625615,0.00029646175,0.16742863],"study_design_scores_gemma":[0.0018416669,0.00025164973,0.8998791,0.000051190633,0.000022712016,0.00073483976,0.011259212,0.000003514573,0.040094197,0.0003093056,0.045361247,0.0001913913],"about_ca_topic_score_codex":0.00020783838,"about_ca_topic_score_gemma":0.00058264396,"teacher_disagreement_score":0.869945,"about_ca_system_score_codex":0.000055373916,"about_ca_system_score_gemma":0.00011232901,"threshold_uncertainty_score":0.42033422},"labels":[],"label_agreement":null},{"id":"W2052175235","doi":"10.1096/fj.09-135624","title":"Toll‐like receptor ligands induce polymorphonuclear leukocyte migration: key roles for leukotriene B <sub>4</sub> and platelet‐activating factor","year":2009,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Université de Montréal; Centre hospitalier universitaire de Québec","funders":"Canadian Arthritis Network; Canadian Institutes of Health Research","keywords":"Platelet-activating factor; Receptor; Leukotriene; Chemistry; Toll-like receptor; Receptor antagonist; Lipid signaling; Biology; Pharmacology; Biochemistry; Antagonist; Immunology; Innate immune system","score_opus":0.012332793318450658,"score_gpt":0.21910305574440933,"score_spread":0.20677026242595867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052175235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99422836,0.00255978,0.00035702166,0.0020396288,0.00048192727,0.00022438011,0.000012632408,0.00003906352,0.00005720644],"genre_scores_gemma":[0.9982225,0.00068635825,0.0000849993,0.0003806529,0.0002302118,0.0000057486645,0.000041786174,0.000017869905,0.00032991782],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884045,0.00015651333,0.00040465378,0.00017105628,0.00006305174,0.00036429052],"domain_scores_gemma":[0.9991522,0.0002308636,0.00030469027,0.0001723152,0.000101277816,0.000038674407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004892048,0.00020102233,0.00024805826,0.00012756653,0.0009241998,0.00011236577,0.00019250637,0.00022380255,0.00007317407],"category_scores_gemma":[0.00014228956,0.00014224165,0.00011501224,0.00010710222,0.00009081624,0.00035627504,0.000030536343,0.00050688477,0.00007021044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000997233,0.000024532324,0.000029573486,0.000003380158,0.00008591709,0.0000029803548,0.0016684356,0.000008205852,0.9121589,0.0000872539,0.0016723528,0.08326126],"study_design_scores_gemma":[0.001553562,0.00046021174,0.0017301273,0.000055564822,0.000017402097,0.00064475974,0.00058435445,0.000027259923,0.9772258,0.000112320755,0.01741083,0.00017781387],"about_ca_topic_score_codex":0.0000066272983,"about_ca_topic_score_gemma":0.0000054586462,"teacher_disagreement_score":0.08308344,"about_ca_system_score_codex":0.00006880189,"about_ca_system_score_gemma":0.00010895961,"threshold_uncertainty_score":0.71082914},"labels":[],"label_agreement":null},{"id":"W2052356526","doi":"10.1371/journal.ppat.1004648","title":"CXCL9 Contributes to Antimicrobial Protection of the Gut during Citrobacter rodentium Infection Independent of Chemokine-Receptor Signaling","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Population Health Research Institute; McMaster University","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Citrobacter rodentium; CXCL9; Microbiology; CXCR3; Biology; Chemokine; Immune system; Chemokine receptor; Antimicrobial; Immunology; CXC chemokine receptors; Pathogen","score_opus":0.018645609561287427,"score_gpt":0.21029014910462238,"score_spread":0.19164453954333494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052356526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99790716,0.000067347304,0.00041401148,0.00017475135,0.00071012194,0.0006140439,0.000028653234,0.00003140334,0.0000524846],"genre_scores_gemma":[0.99954337,0.0000059159643,0.00002988222,0.000021355603,0.00004338333,0.000033871558,0.00002858878,0.000013396672,0.00028023703],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989269,0.00023156252,0.00040757217,0.00016712562,0.0000663815,0.00020050563],"domain_scores_gemma":[0.99914634,0.00002297815,0.00026550595,0.0002320551,0.00031787078,0.000015269134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032367712,0.0001263993,0.0002455946,0.00015614755,0.0000993992,0.000009525164,0.00012727409,0.00019438459,0.00005544554],"category_scores_gemma":[0.00028020106,0.00009993085,0.00012128952,0.00023341143,0.000060241644,0.00009739896,0.00010889397,0.00017609414,0.000079452795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005222616,0.000119962904,0.009442115,0.00005470809,0.00014811012,2.7810628e-7,0.00053232856,0.0001477944,0.98873407,0.000015360883,0.000089511625,0.000193499],"study_design_scores_gemma":[0.0010574744,0.00009252184,0.038978305,0.00011711439,0.000065281536,0.0000104177025,0.000058066627,0.0000068562767,0.95912254,0.00001220911,0.000384676,0.00009456543],"about_ca_topic_score_codex":0.00007832984,"about_ca_topic_score_gemma":0.000011144705,"teacher_disagreement_score":0.029611558,"about_ca_system_score_codex":0.00008632804,"about_ca_system_score_gemma":0.00006420759,"threshold_uncertainty_score":0.40750617},"labels":[],"label_agreement":null},{"id":"W2052365021","doi":"10.1074/jbc.m110.115022","title":"TRIF Modulates TLR5-dependent Responses by Inducing Proteolytic Degradation of TLR5","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; McGill University; Flight Attendant Medical Research Institute","keywords":"TRIF; TLR5; Signal transducing adaptor protein; Cell biology; TLR3; TLR2; HEK 293 cells; Chemistry; Protein degradation; Toll-like receptor; Signal transduction; Biology; Receptor; Biochemistry; TLR4; Innate immune system","score_opus":0.015840671842422983,"score_gpt":0.24443134598999056,"score_spread":0.22859067414756756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2052365021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980624,0.0010454718,0.00009784984,0.00026490874,0.0002146498,0.000091501934,0.0000094721845,0.000012847087,0.0002009325],"genre_scores_gemma":[0.9982379,0.00010819485,0.0001559466,0.000020171074,0.00005785613,0.0000034084342,0.000032094802,0.0000060293037,0.0013783975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987972,0.0001484551,0.00067453005,0.00013202691,0.0000619255,0.0001858567],"domain_scores_gemma":[0.99865305,0.00027867107,0.00068905397,0.00016401349,0.00018851829,0.000026689248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008338291,0.00013536014,0.0003254033,0.00005263361,0.00007038068,0.000011114624,0.00024684693,0.0005113703,0.00053183816],"category_scores_gemma":[0.0012768729,0.00009170837,0.0001375379,0.000082291335,0.00017453889,0.000104436665,0.00004474338,0.0007078544,0.000015669362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010866256,0.00011501759,0.0013997719,0.000019990506,0.00007085685,0.0000047562207,0.000039852323,0.000001901219,0.9936646,0.000010918889,0.00031920912,0.003266507],"study_design_scores_gemma":[0.0008546216,0.0002455458,0.0031203837,0.00004094647,0.000022518363,0.0003262984,0.0001022953,0.0000032584664,0.9929784,0.0001269284,0.0020744638,0.000104349085],"about_ca_topic_score_codex":0.0000066074185,"about_ca_topic_score_gemma":2.4433777e-7,"teacher_disagreement_score":0.003162158,"about_ca_system_score_codex":0.00002680095,"about_ca_system_score_gemma":0.000093602335,"threshold_uncertainty_score":0.5823255},"labels":[],"label_agreement":null},{"id":"W2053185103","doi":"10.1002/ibd.20808","title":"Reduced expression of basal and probiotic-inducible G-CSF in intestinal mononuclear cells is associated with inflammatory bowel disease","year":2008,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; London Health Sciences Centre; Western University","funders":"","keywords":"Peripheral blood mononuclear cell; Cytokine; Proinflammatory cytokine; Lamina propria; Biology; Lactobacillus rhamnosus; Immunology; Inflammatory bowel disease; Tumor necrosis factor alpha; Inflammation; Internal medicine; Medicine; Probiotic; Epithelium; In vitro","score_opus":0.009917583682421861,"score_gpt":0.20864540205619736,"score_spread":0.1987278183737755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053185103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99723417,0.0014545725,0.000008687058,0.00009914757,0.00016909333,0.0006698585,0.00007047524,0.00013033245,0.00016365877],"genre_scores_gemma":[0.9988041,0.00018613091,0.0000403231,0.00009664903,0.000030898558,0.0000714889,0.000111520494,0.000056600595,0.0006023176],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99748915,0.00046842467,0.00078321795,0.00055597676,0.00016022017,0.00054299337],"domain_scores_gemma":[0.99839026,0.00025444565,0.00046273132,0.00054595387,0.00019855943,0.0001480772],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00027347286,0.0004191747,0.00045629757,0.00039050519,0.0002821517,0.000026246013,0.00028314575,0.000273272,0.0002909535],"category_scores_gemma":[0.00039010638,0.0003722912,0.00012956551,0.00018478032,0.00069216196,0.0006079195,0.00016688395,0.0003716653,0.00009760493],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00491669,0.00055155874,0.27661744,0.00029965624,0.00014184884,0.00048365555,0.0017938163,0.00017883496,0.71186835,0.000059052116,0.0028668884,0.00022222081],"study_design_scores_gemma":[0.002502751,0.00017725867,0.6898968,0.000835193,0.0000808347,0.000024947898,0.0002664346,0.00006432945,0.3054012,0.000084951,0.00025421398,0.0004110593],"about_ca_topic_score_codex":0.000020582418,"about_ca_topic_score_gemma":0.000007524413,"teacher_disagreement_score":0.41327938,"about_ca_system_score_codex":0.00009931615,"about_ca_system_score_gemma":0.00052685034,"threshold_uncertainty_score":0.9998729},"labels":[],"label_agreement":null},{"id":"W2053317387","doi":"10.1016/j.meegid.2004.07.002","title":"Detection of a single nucleotide polymorphism in the IL-6 promoter region of ancient nuclear DNA","year":2004,"lang":"en","type":"article","venue":"Infection Genetics and Evolution","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University; University of Manitoba","funders":"University of Manitoba; Canada Research Chairs; Wenner-Gren Foundation","keywords":"Single-nucleotide polymorphism; SNP; Biology; Genetics; Ancient DNA; DNA; Nuclear DNA; Polymorphism (computer science); Molecular biology; Gene; Genotype; Medicine; Population","score_opus":0.0101092291184338,"score_gpt":0.19919470591185562,"score_spread":0.18908547679342183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053317387","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99690896,0.0008147967,0.0015899658,0.00011067617,0.00026024925,0.0001884121,0.0000013000374,0.000011920109,0.00011373461],"genre_scores_gemma":[0.99974775,0.00016898294,0.000015599844,0.000022920778,0.000017611786,0.0000052439527,0.0000048476304,0.0000057574653,0.000011274013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938506,0.00011624681,0.00025011488,0.000104241415,0.000035009773,0.00010933931],"domain_scores_gemma":[0.999645,0.000016455942,0.00014943353,0.00012519285,0.000058546324,0.000005378328],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021749671,0.00006961851,0.000099143355,0.00015570692,0.00007917166,0.0000055417536,0.000038212747,0.000121459474,0.000004804042],"category_scores_gemma":[0.000026688827,0.00005716178,0.00004128995,0.00017642093,0.00010912876,0.00006664382,0.000017452134,0.00008422898,0.0000092522405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010204332,0.00012172027,0.0014364049,0.000017656874,0.0000116060655,4.070092e-7,0.00089823565,0.000109702894,0.99180716,0.00040053215,0.000011797762,0.0050827325],"study_design_scores_gemma":[0.00092693523,0.0007475091,0.39773968,0.00005678968,0.000024867259,0.00011878787,0.00015721936,0.00005269516,0.5957992,0.00066788023,0.0036268816,0.0000815681],"about_ca_topic_score_codex":0.00041054896,"about_ca_topic_score_gemma":0.00008522176,"teacher_disagreement_score":0.39630327,"about_ca_system_score_codex":0.00006374918,"about_ca_system_score_gemma":0.000019881178,"threshold_uncertainty_score":0.23309897},"labels":[],"label_agreement":null},{"id":"W2053454515","doi":"10.1016/j.vetimm.2014.12.005","title":"Expression profiles of antiviral response genes in chicken bursal cells stimulated with Toll-like receptor ligands","year":2014,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Guelph","funders":"","keywords":"Biology; Toll-like receptor; IRF7; TLR3; Immune system; Innate immune system; TLR7; Interferon; Lipopolysaccharide; Receptor; TLR9; TLR5; Gene; Molecular biology; Cell biology; Virology; Immunology; Gene expression; Genetics","score_opus":0.007994407433798853,"score_gpt":0.224315649516117,"score_spread":0.21632124208231812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053454515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925411,0.0057564555,0.00010454925,0.00018036879,0.00080770365,0.00040059508,0.000016735905,0.000084660925,0.00010787098],"genre_scores_gemma":[0.99799305,0.0007556305,0.00034415376,0.00005651725,0.000018070472,0.000067133384,0.00012920405,0.000039611463,0.00059663143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99612594,0.0019322942,0.0007425953,0.00054358836,0.00004957317,0.0006060212],"domain_scores_gemma":[0.99841267,0.00051596,0.00035896397,0.00059817766,0.00009634854,0.000017875875],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011142301,0.00040467203,0.00079860986,0.00055566226,0.00022366899,0.0000127340545,0.00034211553,0.00074647815,0.00011747045],"category_scores_gemma":[0.000118677446,0.00033764337,0.00007882808,0.0002531256,0.0010864696,0.00027861848,0.00027709955,0.0005600539,0.0001017122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.033394285,0.00020542687,0.0028137208,0.000040008235,0.00009880944,0.000054502387,0.0011568184,0.000008819287,0.95548826,0.000075857155,0.000048757607,0.006614751],"study_design_scores_gemma":[0.004317022,0.008540439,0.0691409,0.0001759416,0.00003260671,0.0010293121,0.00040970833,0.000017687133,0.9082902,0.0000321502,0.007636241,0.00037778777],"about_ca_topic_score_codex":0.000036059395,"about_ca_topic_score_gemma":0.0000020763869,"teacher_disagreement_score":0.06632718,"about_ca_system_score_codex":0.000032844728,"about_ca_system_score_gemma":0.00008909959,"threshold_uncertainty_score":0.99990755},"labels":[],"label_agreement":null},{"id":"W2053504378","doi":"10.1021/jf060169h","title":"<i>Quillaja</i>Saponin Can Modulate Ovalbumin-Induced IgE Allergic Responses through Regulation of Th1/Th2 Balance in a Murine Model","year":2006,"lang":"en","type":"article","venue":"Journal of Agricultural and Food Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Saponin; Ovalbumin; Immunoglobulin E; Histamine; Immune system; Immunology; Spleen; Chemistry; Allergy; Pharmacology; Antibody; Biology; Medicine","score_opus":0.009067727806780251,"score_gpt":0.2021744404740618,"score_spread":0.19310671266728155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053504378","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961689,0.0026735,0.000008573701,0.000578587,0.00006172502,0.000068689325,0.000008689307,0.000007925535,0.00042339484],"genre_scores_gemma":[0.9981565,0.0002183369,0.00009809151,0.000013583477,0.00006067626,0.0000021212654,0.000037426194,0.0000054810057,0.0014078025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989362,0.0000665395,0.00061591825,0.00012685137,0.00006813925,0.00018636571],"domain_scores_gemma":[0.99916255,0.000052676376,0.0005117621,0.00009899492,0.00015962216,0.000014410537],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001802154,0.00015842942,0.00033428552,0.000036969264,0.00005719878,0.000010773722,0.00011554468,0.00021005198,0.000019904879],"category_scores_gemma":[0.000038131973,0.00010286753,0.000107449814,0.00012557681,0.000060480816,0.00017965282,0.000033742257,0.00024898778,0.000001132897],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000402877,0.00007044121,0.0004039212,0.000049310554,0.000063173386,0.0000022579095,0.00028446713,0.00094305596,0.9972945,0.0000524317,0.0003041546,0.00012945068],"study_design_scores_gemma":[0.0014361046,0.00015083318,0.11778651,0.00014475653,0.000025776033,0.00037389898,0.00020877125,0.000043096235,0.8792297,0.00033833776,0.00013170048,0.00013046917],"about_ca_topic_score_codex":0.000036854206,"about_ca_topic_score_gemma":0.000010035137,"teacher_disagreement_score":0.11806472,"about_ca_system_score_codex":0.00004997605,"about_ca_system_score_gemma":0.00005321454,"threshold_uncertainty_score":0.41948164},"labels":[],"label_agreement":null},{"id":"W2053941125","doi":"10.1074/jbc.m109.033670","title":"pH-dependent Internalization of Muramyl Peptides from Early Endosomes Enables Nod1 and Nod2 Signaling","year":2009,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":211,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Canada Research Chairs","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Internalization; Endosome; NOD1; Endocytosis; Cell biology; NOD2; Peptidoglycan; Endocytic cycle; Cytosol; Biology; Signal transduction; Muramyl dipeptide; Chemistry; Biochemistry; Intracellular; Receptor; Innate immune system; Enzyme","score_opus":0.01273180685745421,"score_gpt":0.22332358207384032,"score_spread":0.2105917752163861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2053941125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99349415,0.0056146826,0.00047309135,0.00010881979,0.00007741317,0.000033323602,0.000006135448,0.000009253366,0.00018314808],"genre_scores_gemma":[0.99905235,0.0005692915,0.000108940054,0.000050898765,0.00007790353,4.7923135e-7,0.000018690971,0.0000032006142,0.00011823473],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991133,0.000085193766,0.000516584,0.00010836673,0.000044535904,0.00013198587],"domain_scores_gemma":[0.99914354,0.0001446866,0.00048798643,0.00008060476,0.0001225173,0.0000206847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002422769,0.000113656264,0.0002979463,0.0000363695,0.000043909808,0.000015755291,0.0001547938,0.00024406544,0.0002633624],"category_scores_gemma":[0.00022477073,0.000077827586,0.000100319805,0.000041873973,0.00009589952,0.00010315801,0.000031348045,0.00023094633,0.0000056862236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005228761,0.000062350395,0.0037774155,0.0000100659945,0.00008607308,0.000009164859,0.00016031232,0.0000050692374,0.9916873,0.000018754974,0.000037550595,0.0036230802],"study_design_scores_gemma":[0.0007353195,0.00025400682,0.009990838,0.0001299884,0.000028017039,0.00011213637,0.0001745291,0.00000219889,0.98736274,0.0006777478,0.00044878395,0.00008368979],"about_ca_topic_score_codex":0.000012500532,"about_ca_topic_score_gemma":1.3417075e-7,"teacher_disagreement_score":0.0062134233,"about_ca_system_score_codex":0.000020773123,"about_ca_system_score_gemma":0.000023773184,"threshold_uncertainty_score":0.3173717},"labels":[],"label_agreement":null},{"id":"W2054165177","doi":"10.1016/j.cyto.2010.07.374","title":"PS3-35 Caspase-1 processes high mobility group box 1 and is required for its release during infection and septic shock","year":2010,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Septic shock; Shock (circulatory); Medicine; Immunology; Internal medicine; Sepsis","score_opus":0.008980499551960813,"score_gpt":0.23325502313574029,"score_spread":0.22427452358377947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054165177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785554,0.0009875795,0.00008918568,0.00025047196,0.00024558083,0.00043003404,0.000025761394,0.000071788614,0.000044065844],"genre_scores_gemma":[0.9983787,0.00025634308,0.00008141634,0.0000545185,0.00006054196,0.000088772606,0.000091999726,0.000014599598,0.0009731309],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923486,0.00004790129,0.00021684247,0.00026853758,0.000020306044,0.00021158134],"domain_scores_gemma":[0.9994877,0.00011874262,0.000091255206,0.00017437531,0.00010516105,0.000022774237],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019619604,0.00013933766,0.0001837365,0.00008207968,0.00026332366,0.00002336448,0.000044768658,0.00022600095,0.00011275631],"category_scores_gemma":[0.00031932816,0.00012641997,0.000029714487,0.000090829184,0.00010980298,0.0002588332,0.00004907922,0.00018028686,0.000027492128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063450116,0.0000585857,0.0016283857,0.00031273754,0.00004306051,0.0000013361262,0.00040275272,6.1829166e-7,0.9941426,0.0001916768,0.00016825298,0.0024154722],"study_design_scores_gemma":[0.0018328987,0.0002519884,0.074889496,0.000041919808,0.00005608649,0.00011342467,0.0000319924,0.000013235061,0.91313493,0.00020396241,0.009261299,0.00016877074],"about_ca_topic_score_codex":0.00007893817,"about_ca_topic_score_gemma":0.00010519962,"teacher_disagreement_score":0.0810077,"about_ca_system_score_codex":0.000017035823,"about_ca_system_score_gemma":0.000033320626,"threshold_uncertainty_score":0.5155257},"labels":[],"label_agreement":null},{"id":"W2054283974","doi":"10.1016/j.pupt.2015.02.002","title":"CXCR1/CXCR2 antagonist CXCL8(3-74)K11R/G31P blocks lung inflammation in swine barn dust-instilled mice","year":2015,"lang":"en","type":"article","venue":"Pulmonary Pharmacology & Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute on Alcohol Abuse and Alcoholism; National Institute for Occupational Safety and Health; Central States Center for Agricultural Safety and Health, University of Nebraska Medical Center","keywords":"Chemokine; Inflammation; Barn; Lung; Interleukin 8; Immunology; CXC chemokine receptors; Medicine; Pharmacology; Chemistry; Chemokine receptor; Internal medicine","score_opus":0.02546840546406724,"score_gpt":0.29042559831566533,"score_spread":0.2649571928515981,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054283974","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9752568,0.010572316,0.00015475966,0.005783747,0.0033330664,0.0010094418,0.00002228656,0.0002444893,0.0036230704],"genre_scores_gemma":[0.99230427,0.0013441147,0.00006975774,0.0021139013,0.00034316798,0.00015117848,0.00046212884,0.00006212157,0.0031493576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99648935,0.0010227548,0.0009509542,0.00054576853,0.00012097924,0.0008701834],"domain_scores_gemma":[0.99863106,0.00029985528,0.00036310893,0.00037737188,0.00024624856,0.00008237191],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010741279,0.00048972055,0.00059840543,0.00047860527,0.00029282333,0.000033859396,0.0005394209,0.000713921,0.00068993145],"category_scores_gemma":[0.00002637807,0.00048337958,0.00014588996,0.00046427184,0.00037277528,0.00042785285,0.0001911145,0.0009415169,0.000748642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032709008,0.00036487237,0.0046969643,0.000029126144,0.00039901445,0.00014040552,0.0013103978,0.00026705026,0.9545626,0.000056065623,0.002990841,0.031911764],"study_design_scores_gemma":[0.0053890627,0.00027592402,0.004576571,0.000036999412,0.00047747217,0.00040366466,0.00066204293,0.0033786944,0.53762084,0.00015910329,0.44642052,0.00059906614],"about_ca_topic_score_codex":0.000100315825,"about_ca_topic_score_gemma":0.000031289357,"teacher_disagreement_score":0.44342968,"about_ca_system_score_codex":0.0003396013,"about_ca_system_score_gemma":0.00037563362,"threshold_uncertainty_score":0.99976176},"labels":[],"label_agreement":null},{"id":"W2054410637","doi":"10.1097/00024382-200404000-00012","title":"BACTERIAL DNA AND RNA INDUCE RAT CARDIAC MYOCYTE CONTRACTION DEPRESSION IN VITRO","year":2004,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Laurentian University; University of Manitoba","funders":"","keywords":"RNA; Septic shock; Sepsis; Myocyte; Proinflammatory cytokine; In vitro; Shock (circulatory); Biology; Contraction (grammar); Inflammation; Microbiology; Immunology; Internal medicine; Medicine; Endocrinology; Biochemistry; Gene","score_opus":0.006737282849428542,"score_gpt":0.22059092438004027,"score_spread":0.21385364153061173,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054410637","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640703,0.0012375499,0.000040587154,0.00018304551,0.0014192995,0.00016868986,0.0000035003893,0.000028558321,0.00051174586],"genre_scores_gemma":[0.99931437,0.00016029223,0.00002390891,0.000045002034,0.000071522634,0.000009180566,0.00009577448,0.000007641201,0.0002722806],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99933475,0.00013915164,0.0001763566,0.00015300722,0.00001909714,0.00017764806],"domain_scores_gemma":[0.9997458,0.00004563668,0.00005831636,0.000120392644,0.000019409663,0.000010467631],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016339474,0.00009494301,0.00016650054,0.00007996626,0.00008417189,0.000014749702,0.00004570516,0.00021748751,0.000049927876],"category_scores_gemma":[0.00005147798,0.00008590008,0.0000348162,0.00005408175,0.000040520277,0.00018705986,0.000030714895,0.00018506746,0.00012830543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012484028,0.000021335461,0.00007912937,0.000004152946,0.000019204666,0.0000027746573,0.00024816647,0.000002774487,0.97963613,0.00003090539,0.000115286915,0.018591743],"study_design_scores_gemma":[0.0018075744,0.00004038868,0.013093335,0.000024250316,0.000012069635,0.000017169501,0.00007509149,7.980157e-7,0.9684043,0.00008404874,0.016345404,0.00009557263],"about_ca_topic_score_codex":0.00014239743,"about_ca_topic_score_gemma":0.0000082428805,"teacher_disagreement_score":0.01849617,"about_ca_system_score_codex":0.00006109255,"about_ca_system_score_gemma":0.00004891575,"threshold_uncertainty_score":0.35029036},"labels":[],"label_agreement":null},{"id":"W2054606341","doi":"10.1038/sj.mp.4002122","title":"MyD88 signaling in brain endothelial cells is essential for the neuronal activity and glucocorticoid release during systemic inflammation","year":2008,"lang":"en","type":"article","venue":"Molecular Psychiatry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; National Institutes of Health; Max-Planck-Gesellschaft; Canada Research Chairs; National Institute for Health and Care Research","keywords":"Microglia; Immune system; Biology; Cell biology; Inflammation; Cytokine; Endothelium; Immunology; Signal transduction; Neuroinflammation; Tumor necrosis factor alpha; Bone marrow; Blood–brain barrier; Endothelial activation; Neuroscience; Endocrinology; Central nervous system","score_opus":0.004745537437433452,"score_gpt":0.20816496821172656,"score_spread":0.20341943077429311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054606341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99356186,0.0014225866,0.0023465704,0.001160543,0.0007982062,0.0006541856,0.000011005174,0.000026828175,0.000018235438],"genre_scores_gemma":[0.99930125,0.00008419996,0.000056112454,0.00016672326,0.00007379073,0.00005898482,0.00001408625,0.000020015377,0.00022484837],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894303,0.00023013713,0.0002853768,0.00024531898,0.000048711965,0.00024739673],"domain_scores_gemma":[0.9994446,0.00015034355,0.00014333187,0.00022211862,0.000027532049,0.000012085241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019986324,0.00014848511,0.00017002587,0.00010415963,0.0002466418,0.000016631086,0.000111919246,0.00013155249,0.000027409691],"category_scores_gemma":[0.000036362435,0.00012910637,0.00010275512,0.00008446238,0.000075274154,0.00010665589,0.000038606497,0.00021550232,0.000041839136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008086656,0.000029425082,0.00064513134,0.00009252617,0.000057107707,0.0000063443954,0.00041383025,0.0003196524,0.9967863,0.00015255752,0.00007774145,0.00061072025],"study_design_scores_gemma":[0.0022860323,0.00007026069,0.0079995515,0.000055897115,0.000030909978,0.00019106836,0.00010160798,0.0002865623,0.98834544,0.000048431026,0.00043571275,0.00014853427],"about_ca_topic_score_codex":0.00005028628,"about_ca_topic_score_gemma":0.000007889757,"teacher_disagreement_score":0.008440866,"about_ca_system_score_codex":0.000024828783,"about_ca_system_score_gemma":0.0001067545,"threshold_uncertainty_score":0.5264805},"labels":[],"label_agreement":null},{"id":"W2054828149","doi":"10.1038/ni.2833","title":"TLR-driven early glycolytic reprogramming via the kinases TBK1-IKKɛ supports the anabolic demands of dendritic cell activation","year":2014,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1048,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Institute of Allergy and Infectious Diseases; National Cancer Institute","keywords":"Cell biology; Kinase; Glycolysis; Endoplasmic reticulum; Chemistry; Biology; Biochemistry; Metabolism","score_opus":0.0032475572179565173,"score_gpt":0.21457314519246268,"score_spread":0.21132558797450615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054828149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98389167,0.0113970395,0.0005063498,0.0018058285,0.0010353422,0.0005045762,0.0000027483504,0.00007905799,0.0007773965],"genre_scores_gemma":[0.9981102,0.00022120676,0.000032860113,0.0004251403,0.000081424136,0.000062445884,0.0000924416,0.000026488326,0.00094781275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997682,0.0008816994,0.00052881864,0.00033374905,0.00007755307,0.0004961913],"domain_scores_gemma":[0.99760264,0.00086961815,0.00043250303,0.00088165206,0.00020256838,0.000011021125],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006535448,0.00025054763,0.00037153115,0.00018003883,0.0004512049,0.000026271671,0.00059385336,0.0008964658,0.0001710072],"category_scores_gemma":[0.0004760341,0.00015549797,0.00017625821,0.0003394476,0.0005573089,0.00019728669,0.0001445714,0.0012433876,0.00015222616],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047917356,0.00010379426,0.0010792227,0.000027185537,0.0002450567,0.000003140069,0.0009932804,0.000011525364,0.9667294,0.0028791153,0.001046627,0.026402447],"study_design_scores_gemma":[0.0012680718,0.0006736642,0.061765347,0.000051887237,0.00013506129,0.00016227075,0.00034567056,0.000028857263,0.8117073,0.0004667682,0.12316324,0.0002318713],"about_ca_topic_score_codex":0.0001476622,"about_ca_topic_score_gemma":0.000021572176,"teacher_disagreement_score":0.15502213,"about_ca_system_score_codex":0.00004552121,"about_ca_system_score_gemma":0.00008248697,"threshold_uncertainty_score":0.6914365},"labels":[],"label_agreement":null},{"id":"W2054979063","doi":"10.1074/jbc.c800001200","title":"The Crystal Structure of the Human Toll-like Receptor 10 Cytoplasmic Domain Reveals a Putative Signaling Dimer","year":2008,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":193,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Structural Genomics Consortium","funders":"","keywords":"Dimer; Cytoplasm; Receptor; Toll-like receptor; Domain (mathematical analysis); Toll; Signal transduction; Cell biology; Chemistry; Biology; Genetics; Biochemistry; Innate immune system","score_opus":0.013782221973242366,"score_gpt":0.23486472451609702,"score_spread":0.22108250254285466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054979063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977642,0.0014502107,0.00001459099,0.00026134602,0.0001922031,0.00007520206,0.000016951952,0.000006054478,0.00021923873],"genre_scores_gemma":[0.9981899,0.00009137907,0.00006393728,0.00004488797,0.00008486314,0.0000012239037,0.000015271178,0.0000054032553,0.0015031181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867254,0.00033438642,0.0006113604,0.000108349705,0.000068716276,0.00020463792],"domain_scores_gemma":[0.9985172,0.00037190068,0.000760531,0.000165053,0.00016714093,0.000018158167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038433165,0.0001407881,0.00029956567,0.000016115619,0.00043195914,0.0000080206455,0.000394208,0.00032399766,0.0007003667],"category_scores_gemma":[0.00031457312,0.000063092484,0.0002450189,0.00009179543,0.000580888,0.000046599915,0.00007995283,0.0005554494,0.000008434531],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043860177,0.000028405006,0.0008325901,0.000008003958,0.00013587964,0.0000042817287,0.0002605819,0.0000092584205,0.9963786,0.000020951557,0.0018091521,0.00007368568],"study_design_scores_gemma":[0.0005989332,0.00014801156,0.0023830996,0.00004215027,0.000017793565,0.0006233729,0.00043900864,1.7596463e-7,0.98349965,0.00060793734,0.011554954,0.00008490611],"about_ca_topic_score_codex":0.0000012447033,"about_ca_topic_score_gemma":1.5273275e-7,"teacher_disagreement_score":0.012878952,"about_ca_system_score_codex":0.000043816144,"about_ca_system_score_gemma":0.000076919816,"threshold_uncertainty_score":0.7668524},"labels":[],"label_agreement":null},{"id":"W2054991963","doi":"10.1182/blood-2002-05-1404","title":"Mouse T cells receive costimulatory signals from LIGHT, a TNF family member","year":2002,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"T-cell receptor; Biology; CD28; Cell biology; Tumor necrosis factor alpha; T cell; Lymphokine; Molecular biology; CD3; Receptor; Immunology; Antigen; CD8; Immune system; Biochemistry","score_opus":0.016668616214025492,"score_gpt":0.20983022012728555,"score_spread":0.19316160391326007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2054991963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98267525,0.007938936,0.000022813723,0.00013692875,0.00037944072,0.00020351745,0.000033071516,0.00011704145,0.008493006],"genre_scores_gemma":[0.98462814,0.00035871187,0.000065675005,0.00035937762,0.0000664428,0.000014503747,0.000074505835,0.000023952793,0.0144086685],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998881,0.00024028681,0.0002981738,0.00025203952,0.000039947805,0.00028854996],"domain_scores_gemma":[0.99928343,0.00018309614,0.00011010707,0.00034252118,0.0000590198,0.000021818389],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00012501563,0.00017385565,0.00024265407,0.00008389152,0.00013333296,0.000018614815,0.00017731792,0.00029854715,0.0038757105],"category_scores_gemma":[0.00004479067,0.00015864128,0.00010247839,0.00008473441,0.000057654164,0.00012656004,0.000047600475,0.00022568901,0.010412142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006891403,0.00027433416,0.0000674329,0.000003598974,0.00024088235,0.000011210428,0.00063036307,0.000008843222,0.97548544,0.000021236583,0.021867497,0.0013202382],"study_design_scores_gemma":[0.0020963135,0.00009795477,0.00048222856,0.000020200845,0.00009702693,0.0000075783455,0.00007758653,0.000011081813,0.88538074,0.000035941393,0.1115098,0.00018356735],"about_ca_topic_score_codex":0.000068552275,"about_ca_topic_score_gemma":0.0000037235313,"teacher_disagreement_score":0.09010473,"about_ca_system_score_codex":0.000016496526,"about_ca_system_score_gemma":0.00001750209,"threshold_uncertainty_score":0.9970349},"labels":[],"label_agreement":null},{"id":"W2055046713","doi":"10.1089/nat.2010.0275","title":"Cytosine-Phosphate-Guanine Oligodeoxynucleotides Containing GACGTT Motifs Enhance the Immune Responses Elicited by Keyhole Limpet Hemocyanin Antigen in Dairy Cattle","year":2011,"lang":"en","type":"article","venue":"Nucleic Acid Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; National Science Council","keywords":"Keyhole limpet hemocyanin; CpG Oligodeoxynucleotide; Hemocyanin; Biology; CpG site; Antigen; Immune system; Adjuvant; Molecular biology; Antibody; Immunology; Biochemistry; DNA methylation; Gene expression; Gene","score_opus":0.023202712906982562,"score_gpt":0.252195380438418,"score_spread":0.22899266753143543,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055046713","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9769279,0.019771684,0.00021949773,0.0006760009,0.00044319552,0.00043649998,0.000027931026,0.00016290574,0.0013344045],"genre_scores_gemma":[0.99502325,0.0016551442,0.00012847461,0.0010812365,0.000030041068,0.00003839809,0.00011097099,0.00007697346,0.0018555137],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972715,0.0006822697,0.0007908963,0.00042711862,0.00009780626,0.00073040824],"domain_scores_gemma":[0.99839205,0.00032412427,0.00034475295,0.0007836548,0.00012647222,0.00002896273],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00092791603,0.00040522308,0.00049785094,0.00017618862,0.00040315217,0.00004833276,0.0007097512,0.000394908,0.0006530827],"category_scores_gemma":[0.000119442084,0.00032012415,0.00014229628,0.00040527215,0.00042339656,0.00028541518,0.00016124167,0.0006379899,0.0006394943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002380962,0.00019977216,0.0040167435,0.000010548817,0.00024410934,0.000009529727,0.007404474,0.000004742313,0.97611785,0.00048839324,0.00039943802,0.008723424],"study_design_scores_gemma":[0.0013901611,0.0004122191,0.041951552,0.00007394684,0.000056062443,0.000069748115,0.00222473,0.00007603909,0.93152106,0.00012318499,0.021728083,0.0003732121],"about_ca_topic_score_codex":0.00045088344,"about_ca_topic_score_gemma":0.00003994422,"teacher_disagreement_score":0.044596802,"about_ca_system_score_codex":0.00009775956,"about_ca_system_score_gemma":0.00011485182,"threshold_uncertainty_score":0.9999251},"labels":[],"label_agreement":null},{"id":"W2055958188","doi":"10.1097/00004770-200402000-00006","title":"Proinflammatory Cytokine Profiles in Pulp Fibroblasts Stimulated with Lipopolysaccharide and Methyl Mercaptan","year":2004,"lang":"en","type":"article","venue":"Journal of Endodontics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lipopolysaccharide; Tumor necrosis factor alpha; Proinflammatory cytokine; Immune system; Chemistry; Interleukin; Cytokine; Anaerobic bacteria; Peripheral blood mononuclear cell; Interleukin 6; Pulp (tooth); Bacteria; Microbiology; Inflammation; Immunology; Medicine; Biology; Biochemistry; Pathology; In vitro","score_opus":0.006990188207084466,"score_gpt":0.2191926934680302,"score_spread":0.21220250526094572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2055958188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99704856,0.0017945304,0.00031745134,0.00041366235,0.00015309737,0.00017676338,0.0000020535638,0.000013578783,0.000080324084],"genre_scores_gemma":[0.9982589,0.00022417646,0.0012580329,0.000025177262,0.000036466226,0.0000025480344,0.0000044229346,0.000016387585,0.00017392825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99891675,0.00012720269,0.00054702087,0.00010893176,0.000066440596,0.00023366252],"domain_scores_gemma":[0.9992032,0.00009629077,0.0003921556,0.00012439687,0.00015699763,0.000026930757],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046598143,0.00015186273,0.00034401307,0.00030097528,0.000057588393,0.000019831703,0.00011922803,0.0001480806,0.000027969529],"category_scores_gemma":[0.00017078665,0.00011018853,0.00005299566,0.00011738088,0.000110325185,0.00029096036,0.00003100231,0.00041344773,0.000013587059],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013129405,0.00007859464,0.0027795262,0.000032578348,0.00015591994,0.00012182645,0.0007534409,0.00049789366,0.99156517,0.0006180835,0.00003959743,0.002044419],"study_design_scores_gemma":[0.0048381067,0.0007729573,0.017205615,0.00036453555,0.00007400441,0.0011794465,0.00035018468,0.000011886069,0.97317415,0.00028289706,0.0015799477,0.00016626858],"about_ca_topic_score_codex":0.000028528744,"about_ca_topic_score_gemma":0.000032036933,"teacher_disagreement_score":0.018391028,"about_ca_system_score_codex":0.00007294522,"about_ca_system_score_gemma":0.00018918198,"threshold_uncertainty_score":0.44933578},"labels":[],"label_agreement":null},{"id":"W2056312952","doi":"10.1002/(sici)1097-0185(20000501)259:1<25::aid-ar3>3.0.co;2-y","title":"Histology and ultrastructure of the chorioallantoic membrane of the mallard duck (Anas platyrhynchos)","year":2000,"lang":"en","type":"article","venue":"The Anatomical Record","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Chorioallantoic membrane; Mesoderm; Biology; Basement membrane; Epithelium; Mesenchyme; Anatomy; Myoepithelial cell; Ultrastructure; Cell biology; Pathology; Embryo; Embryonic stem cell; Immunology; Medicine; Immunohistochemistry","score_opus":0.003713240258679874,"score_gpt":0.18746591331772722,"score_spread":0.18375267305904736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056312952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950931,0.0013314633,0.0000016096626,0.0017191812,0.00038951728,0.00020230061,0.000008230493,0.000009725037,0.0012448563],"genre_scores_gemma":[0.99632305,0.00055418984,0.000008272184,0.00015120214,0.000021538921,0.0000034972918,0.000004293623,0.000008303133,0.0029256335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989015,0.00040955286,0.0003203762,0.00013946409,0.000039233197,0.00018986718],"domain_scores_gemma":[0.99905676,0.00026781476,0.00016657886,0.00046612127,0.000033254237,0.000009497012],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022111896,0.00012061236,0.00025766875,0.000027250066,0.00015377888,0.0000038703865,0.00047048388,0.00021334378,0.0012522696],"category_scores_gemma":[0.000112232214,0.000055501976,0.00012649733,0.00012869739,0.00064067944,0.000032908596,0.000074498814,0.0003384419,0.00003277184],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016651092,0.000047207814,0.0071021696,0.00003472879,0.000284465,7.9802965e-7,0.0013032383,0.000016171645,0.90493935,0.0035257735,0.0027732626,0.07830772],"study_design_scores_gemma":[0.001439895,0.00013575454,0.26381445,0.00007185139,0.00015126081,0.00023761867,0.00021088662,0.000035199508,0.57615453,0.0016582216,0.15590028,0.00019000989],"about_ca_topic_score_codex":0.00025304477,"about_ca_topic_score_gemma":0.00009874697,"teacher_disagreement_score":0.3287848,"about_ca_system_score_codex":0.000020696898,"about_ca_system_score_gemma":0.00005378951,"threshold_uncertainty_score":0.99966073},"labels":[],"label_agreement":null},{"id":"W2056317997","doi":"10.1016/j.ymeth.2009.03.005","title":"Immunomodulatory consequences of ODN CpG-polycation complexes","year":2009,"lang":"en","type":"review","venue":"Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Centre National de la Recherche Scientifique; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"CpG Oligodeoxynucleotide; Chemistry; CpG site; Biochemistry; DNA methylation; Gene","score_opus":0.08671242544486023,"score_gpt":0.4278429825370576,"score_spread":0.34113055709219736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056317997","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000031994165,0.9940297,0.0035419217,0.000020778343,0.000738419,0.00044666728,0.000018033146,0.00005616666,0.0011162892],"genre_scores_gemma":[0.000024666373,0.98991174,0.007738005,0.000019150324,0.000034148507,0.00006198319,0.0003956803,0.000023763681,0.0017908703],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.994621,0.0037541713,0.0010310318,0.0002947813,0.000037567104,0.00026145088],"domain_scores_gemma":[0.9976271,0.00082762237,0.0008823255,0.0005604159,0.00009134558,0.0000112150365],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0018191951,0.00034334185,0.0017232673,0.00034497675,0.00011726164,0.0000117927275,0.00040485922,0.0006592677,0.0004757035],"category_scores_gemma":[0.00029225583,0.00027560777,0.00049393234,0.00025351616,0.00041324564,0.000090753245,0.000057918394,0.00041032388,0.00028047906],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000021018317,0.000028177308,3.6196116e-7,0.0011800296,0.00025887167,7.760745e-7,0.00007748346,1.6844135e-7,0.040382847,0.0018903384,0.00034455323,0.9558154],"study_design_scores_gemma":[0.00015922866,0.000106866464,0.000030287458,0.0022410764,0.00042493513,0.00009744686,0.000019374887,1.5160771e-7,0.040923826,0.0005467232,0.95519996,0.00025014344],"about_ca_topic_score_codex":0.000047994898,"about_ca_topic_score_gemma":6.374961e-7,"teacher_disagreement_score":0.9555652,"about_ca_system_score_codex":0.00006483709,"about_ca_system_score_gemma":0.00034967245,"threshold_uncertainty_score":0.9999696},"labels":[],"label_agreement":null},{"id":"W2056666667","doi":"10.1042/bst0351479","title":"Nod1 and Nod2 in innate immunity and human inflammatory disorders","year":2007,"lang":"en","type":"review","venue":"Biochemical Society Transactions","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"NOD2; NOD1; Nod; Innate immune system; Peptidoglycan; Pyrin domain; Inflammasome; Biology; Inflammation; Pattern recognition receptor; Immunology; Cell biology; Signal transduction; Immune system; TLR4; Genetics; Bacteria","score_opus":0.02002222271725583,"score_gpt":0.29628176313730725,"score_spread":0.2762595404200514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2056666667","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011760906,0.9871955,0.0002553,0.00004743383,0.00012478419,0.00043055505,0.000023121089,0.00006094822,0.00010146421],"genre_scores_gemma":[0.007031971,0.99225193,0.000040845152,0.000024444353,0.000015719515,0.0000648967,0.00022838355,0.00003065024,0.0003111272],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985131,0.00017754175,0.0005856211,0.00033692285,0.00003634468,0.00035046446],"domain_scores_gemma":[0.999381,0.0001911605,0.00014201627,0.00023231676,0.000020294368,0.000033176544],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00040163213,0.0003485857,0.00072950654,0.000122034915,0.00031921608,0.000020775098,0.00014147926,0.0012249338,0.000098362914],"category_scores_gemma":[0.000015656246,0.0003250246,0.0003739311,0.00024135318,0.0005135559,0.00009671047,0.000031700154,0.0011840067,0.000021882575],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000041131494,0.00023143602,0.000027538343,0.005738913,0.0007020132,0.0000014666164,0.0010557646,1.3452632e-7,0.044129837,0.00012106625,0.00039189938,0.9475588],"study_design_scores_gemma":[0.0007129995,0.000034178043,0.00013628959,0.0016690441,0.0003152525,0.000042201205,0.00018244112,7.715494e-7,0.0025264588,0.000029416473,0.99390554,0.00044540703],"about_ca_topic_score_codex":0.00013239612,"about_ca_topic_score_gemma":0.000027143195,"teacher_disagreement_score":0.99351364,"about_ca_system_score_codex":0.00010124904,"about_ca_system_score_gemma":0.00007945321,"threshold_uncertainty_score":0.9999202},"labels":[],"label_agreement":null},{"id":"W2057027223","doi":"10.1016/j.dci.2008.02.007","title":"Oligodeoxynucleotides containing CpG motifs (CpG-ODN) predominantly induce Th1-type immune response in neonatal chicks","year":2008,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"CpG Oligodeoxynucleotide; Biology; CpG site; Spleen; Immune system; Chemokine; Immunology; Cytokine; Molecular biology; Messenger RNA; Gene expression; Gene; DNA methylation","score_opus":0.03372784843036992,"score_gpt":0.2680291346579824,"score_spread":0.23430128622761248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057027223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888106,0.007288311,0.000121996774,0.00025106856,0.00115552,0.00070007046,0.000015488175,0.00015635857,0.0015006135],"genre_scores_gemma":[0.9960117,0.00028848185,0.0003488923,0.00013426624,0.000022070373,0.00020740426,0.00031903325,0.0000453115,0.0026228759],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.995158,0.0016771009,0.0013021629,0.00071998645,0.00011180766,0.0010309353],"domain_scores_gemma":[0.99807495,0.0007764027,0.00041838747,0.00044882164,0.00024144632,0.000039967515],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009061491,0.00061945774,0.0011216463,0.0007114858,0.00078602246,0.00002973488,0.0006875508,0.0005969565,0.00087281206],"category_scores_gemma":[0.00038257753,0.0006164265,0.00015418969,0.00069277995,0.0011455762,0.0005855833,0.00046937098,0.0011217355,0.00259379],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.032151125,0.0002464693,0.008036339,0.000010008144,0.00063870725,0.00022986357,0.02881832,0.000035680794,0.92566556,0.0012157941,0.00049431954,0.002457786],"study_design_scores_gemma":[0.004810932,0.0009201709,0.50103086,0.00011059131,0.000018205526,0.0017666031,0.006065242,0.00002068039,0.463353,0.000097780045,0.021159949,0.0006459805],"about_ca_topic_score_codex":0.00035940498,"about_ca_topic_score_gemma":0.000078829995,"teacher_disagreement_score":0.49299452,"about_ca_system_score_codex":0.0004713569,"about_ca_system_score_gemma":0.0009423826,"threshold_uncertainty_score":0.9996287},"labels":[],"label_agreement":null},{"id":"W2057194965","doi":"10.1016/j.vetimm.2012.07.008","title":"Characterization of responses elicited by Toll-like receptor agonists in cells of the bursa of Fabricius in chickens","year":2012,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; CD80; Immune system; CpG Oligodeoxynucleotide; Major histocompatibility complex; Receptor; Toll-like receptor; Bursa of Fabricius; Immunology; Lipopolysaccharide; Cell biology; TLR4; MHC class II; Molecular biology; Innate immune system; Gene; Gene expression; CD40; Genetics; Cytotoxic T cell; DNA methylation","score_opus":0.009888733847975737,"score_gpt":0.22756274561640413,"score_spread":0.2176740117684284,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057194965","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895702,0.008694605,0.000014464332,0.00013496284,0.0010802428,0.00035387132,0.00007694649,0.000011899343,0.00006280421],"genre_scores_gemma":[0.99767226,0.0017287808,0.000026039519,0.000045555214,0.0000063339944,0.000033268934,0.00013861404,0.000017256367,0.000331911],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99656564,0.0017414662,0.0009936222,0.00022230396,0.000039258146,0.0004376804],"domain_scores_gemma":[0.9985633,0.0002766252,0.00061353535,0.00046657835,0.00007042944,0.000009552065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078903517,0.0002291221,0.00067138026,0.0004356089,0.00007131187,0.0000022342113,0.00031573174,0.0005492193,0.00008523599],"category_scores_gemma":[0.00013916274,0.00019489795,0.0000888197,0.00038482787,0.0009540784,0.00021195324,0.0002384549,0.0003934148,0.000012634425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036814467,0.00038422993,0.021871103,0.000054542674,0.00006679667,0.0000031050602,0.0026863317,3.951242e-7,0.9687815,0.00014915552,0.000019442123,0.0023019628],"study_design_scores_gemma":[0.0011432165,0.0007839295,0.3625761,0.00007781171,0.000015468395,0.00022920898,0.00034860402,7.6519706e-7,0.6328461,0.000011006555,0.0018562467,0.000111529705],"about_ca_topic_score_codex":0.00014654075,"about_ca_topic_score_gemma":0.0000036071476,"teacher_disagreement_score":0.34070498,"about_ca_system_score_codex":0.00003708132,"about_ca_system_score_gemma":0.00006147568,"threshold_uncertainty_score":0.7947707},"labels":[],"label_agreement":null},{"id":"W2057224156","doi":"10.1186/cc9295","title":"Inhibition of monocyte chemoattractant protein-1 prevents diaphragmatic inflammation and maintains contractile function during endotoxemia","year":2010,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Christie (Canada); McGill University","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"Proinflammatory cytokine; Medicine; Chemokine; Inflammation; Immunology; Monocyte; Pathogenesis; Sepsis; Diaphragmatic breathing; Pathology","score_opus":0.006369805759582527,"score_gpt":0.23861842453610746,"score_spread":0.23224861877652495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057224156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979371,0.0003414287,0.00014348458,0.00013160502,0.0002532285,0.00046707218,0.000007807703,0.00004686704,0.0006714518],"genre_scores_gemma":[0.9995864,0.000008166381,0.00006297464,0.000009091486,0.000047488167,0.00008386185,0.000092573464,0.000012112245,0.00009730564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991234,0.00010986588,0.00033818957,0.00017174584,0.000048634145,0.00020814592],"domain_scores_gemma":[0.9994229,0.00013089259,0.000093709146,0.00016911402,0.00015875089,0.000024601353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015755434,0.00012360925,0.00018341545,0.0000885934,0.00015443735,0.000019408812,0.00004393218,0.00025136923,0.00018948378],"category_scores_gemma":[0.00054221635,0.00011914592,0.000052847805,0.000056706984,0.00017770471,0.00030771527,0.000036528083,0.00034893534,0.000037818227],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031434238,0.000027084545,0.00021744265,0.00036474902,0.000018581863,0.0000032408063,0.00056532596,4.5435772e-7,0.98972225,0.005297426,0.000003524763,0.0034655465],"study_design_scores_gemma":[0.00090162747,0.000109670524,0.01755996,0.000108680586,0.000051336236,0.000040861407,0.00087059155,0.000006965618,0.97905123,0.0008549251,0.00032499494,0.00011918116],"about_ca_topic_score_codex":0.000013000679,"about_ca_topic_score_gemma":0.000011077047,"teacher_disagreement_score":0.017342519,"about_ca_system_score_codex":0.000032316377,"about_ca_system_score_gemma":0.000038088394,"threshold_uncertainty_score":0.48586297},"labels":[],"label_agreement":null},{"id":"W2057372272","doi":"10.1074/jbc.m111.333146","title":"Post-transcriptional Inhibition of Luciferase Reporter Assays by the Nod-like Receptor Proteins NLRX1 and NLRC3","year":2012,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Luciferase; Biology; Interferon; Signal transduction; Reporter gene; Molecular biology; Cell biology; HEK 293 cells; Receptor; Gene; Biochemistry; Gene expression; Transfection; Genetics","score_opus":0.013277149135252447,"score_gpt":0.22269007634882682,"score_spread":0.20941292721357438,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057372272","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99399626,0.004479798,0.00009922161,0.00082864903,0.00018526212,0.00009004744,0.000027827426,0.00000675169,0.00028620893],"genre_scores_gemma":[0.998838,0.00018310317,0.00006920344,0.00013607975,0.00011372614,0.00000522469,0.00009907263,0.0000043115233,0.0005512867],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899185,0.00014808559,0.00053911156,0.00008589032,0.00005559262,0.0001794722],"domain_scores_gemma":[0.999093,0.000109366505,0.00048473835,0.00010248825,0.00018118009,0.000029250443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008085965,0.000110786044,0.00021330648,0.000019761137,0.00008489538,0.000007751213,0.00008815007,0.00030826507,0.0007846239],"category_scores_gemma":[0.0002575385,0.000061612984,0.000117741474,0.00004490778,0.00023655362,0.000137242,0.000028719985,0.0003264965,0.000010229882],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005847415,0.00014274719,0.001742229,0.00001831178,0.00007837915,0.000001816678,0.000114545284,1.0061495e-7,0.9936518,0.000023328337,0.0029103328,0.000731679],"study_design_scores_gemma":[0.000546862,0.000196027,0.006757247,0.000033397784,0.000029381055,0.0007236295,0.00021164968,1.8805109e-7,0.9668155,0.000033936747,0.024572749,0.000079474754],"about_ca_topic_score_codex":0.000003771109,"about_ca_topic_score_gemma":9.2642125e-8,"teacher_disagreement_score":0.02683633,"about_ca_system_score_codex":0.000025242913,"about_ca_system_score_gemma":0.000037284455,"threshold_uncertainty_score":0.85910815},"labels":[],"label_agreement":null},{"id":"W2057383507","doi":"10.1016/j.addr.2008.12.004","title":"Approaches to enhancing immune responses stimulated by CpG oligodeoxynucleotides","year":2009,"lang":"en","type":"review","venue":"Advanced Drug Delivery Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"CpG Oligodeoxynucleotide; TLR9; Immune system; CpG site; Immunology; Toll-Like Receptor 9; Biology; Innate immune system; Downregulation and upregulation; Immunotherapy; Gene expression; Gene; Genetics","score_opus":0.08164691727319298,"score_gpt":0.3035510921415479,"score_spread":0.22190417486835493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057383507","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00033780094,0.9943382,0.00022359689,0.00008486726,0.0006208629,0.0036736298,0.0000764508,0.00022927417,0.0004153183],"genre_scores_gemma":[0.000043899865,0.9852936,0.00065894023,0.00023131479,0.00005974407,0.0007298442,0.0014460947,0.0001242162,0.011412309],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99204904,0.0027957265,0.0028550036,0.0011367727,0.000104004284,0.0010594409],"domain_scores_gemma":[0.9961587,0.00085886614,0.0013327975,0.001454446,0.000099385274,0.00009576994],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0019175558,0.0012430816,0.004715421,0.0005446743,0.00040368258,0.0000645746,0.0009631667,0.0006920872,0.00034210912],"category_scores_gemma":[0.0007184007,0.0010025583,0.0012765995,0.00083864393,0.00012416895,0.00043955698,0.00025879891,0.0010339522,0.008687012],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021701664,0.000086943146,1.00127934e-7,0.00303663,0.00024257864,0.000007462055,0.0001519032,0.000007830946,0.007311592,0.000040508607,0.008610671,0.9802868],"study_design_scores_gemma":[0.00042936852,0.00015420983,0.0000011411116,0.018517362,0.00075375807,0.00007548983,0.000033049342,9.581611e-7,0.006447397,0.000018340332,0.97254854,0.0010204026],"about_ca_topic_score_codex":0.000022766972,"about_ca_topic_score_gemma":0.000008775665,"teacher_disagreement_score":0.97926635,"about_ca_system_score_codex":0.00031485094,"about_ca_system_score_gemma":0.00026768356,"threshold_uncertainty_score":0.9992425},"labels":[],"label_agreement":null},{"id":"W2057459453","doi":"10.1128/iai.70.12.6541-6548.2002","title":"Induction of Keratinocyte Growth Factor 1 Expression by Lipopolysaccharide Is Regulated by CD-14 and Toll-Like Receptors 2 and 4","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Biology; Keratinocyte growth factor; Keratinocyte; CD14; Porphyromonas gingivalis; Lipopolysaccharide; Receptor; Signal transduction; Cell biology; Toll-like receptor; Growth factor; Molecular biology; Immunology; Innate immune system; Cell culture; Biochemistry","score_opus":0.012161134807354966,"score_gpt":0.21840959840374063,"score_spread":0.20624846359638566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057459453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945606,0.004370614,0.000058828606,0.0001545328,0.0004722224,0.0001598144,0.000016689148,0.00005223545,0.00015444594],"genre_scores_gemma":[0.9917718,0.0055202716,0.000010099541,0.0000724268,0.00001009154,0.000008275195,0.00007469728,0.000010442188,0.0025218998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99900997,0.0003219928,0.0002959448,0.00018598477,0.000034985966,0.00015111355],"domain_scores_gemma":[0.99949855,0.00006836976,0.00017558706,0.0001521801,0.000080143414,0.000025166959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016368376,0.00016083718,0.00021724918,0.000121394514,0.0003596245,0.000029121431,0.000038459377,0.00031115997,0.0006099057],"category_scores_gemma":[0.00007645591,0.00014543647,0.000031268723,0.00009126809,0.00019732903,0.000376851,0.000060084985,0.0002941783,0.000015252938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012304843,0.00006430343,0.0034000494,0.00002456212,0.000048444457,7.687384e-8,0.0010677908,5.1948263e-8,0.9639188,0.00001428087,0.014628461,0.016710117],"study_design_scores_gemma":[0.0010582469,0.00027069557,0.013459307,0.000046332723,0.000022609554,0.000048355665,0.00015233058,0.00001580502,0.9589524,0.000030041132,0.025781507,0.00016233086],"about_ca_topic_score_codex":0.00077995367,"about_ca_topic_score_gemma":0.0000064535698,"teacher_disagreement_score":0.016547786,"about_ca_system_score_codex":0.00002057781,"about_ca_system_score_gemma":0.000006335623,"threshold_uncertainty_score":0.667804},"labels":[],"label_agreement":null},{"id":"W2057623576","doi":"10.1186/cc14012","title":"Impact of KDO in biological activity of Re-LPS","year":2014,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Children's Health Foundation; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Fundação de Amparo à Pesquisa e Inovação do Estado de Santa Catarina; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Japan Society for the Promotion of Science; Russian Foundation for Basic Research; London Health Sciences Centre","keywords":"Medicine","score_opus":0.026510302716526556,"score_gpt":0.33061715935130787,"score_spread":0.3041068566347813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2057623576","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971023,0.00059846375,0.00011801095,0.00007377125,0.00008611829,0.000057855363,0.000011942392,0.000010069786,0.0019414352],"genre_scores_gemma":[0.9999112,0.000008738755,0.000018244447,0.000009353704,0.000008913782,0.0000033963718,0.000021654774,0.000003347086,0.000015173231],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991699,0.0003571701,0.00018664413,0.00010622132,0.000017942242,0.00016214394],"domain_scores_gemma":[0.9992611,0.00043651613,0.000032509317,0.00015888539,0.00010114984,0.000009882469],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019239691,0.000070602706,0.00023361304,0.00006563087,0.00002096751,0.0000017037997,0.00008552396,0.00021416039,0.00031411235],"category_scores_gemma":[0.0011986981,0.000052442374,0.00010760832,0.00007382716,0.00025945526,0.000045884153,0.000038248072,0.00014406073,0.0000345084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048091612,0.00008516773,0.023320565,0.000057683395,0.0000145409485,0.000001012648,0.00043734902,0.000002278487,0.9624198,0.0032633576,0.00005986324,0.009857474],"study_design_scores_gemma":[0.0005667718,0.00089921476,0.4425233,0.000040276947,0.000010057836,0.000004842263,0.0002839602,0.0000061804803,0.5548861,0.00034411825,0.00035327146,0.000081885424],"about_ca_topic_score_codex":0.00008955848,"about_ca_topic_score_gemma":0.000006393937,"teacher_disagreement_score":0.41920274,"about_ca_system_score_codex":0.000027649063,"about_ca_system_score_gemma":0.000033306773,"threshold_uncertainty_score":0.343931},"labels":[],"label_agreement":null},{"id":"W2058442785","doi":"10.1371/journal.pone.0038677","title":"Receptor-Independent Interaction of Bacterial Lipopolysaccharide with Lipid and Lymphocyte Membranes; the Role of Cholesterol","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Infection and Immunity; Medical Research Council","keywords":"Membrane; Lipopolysaccharide; Bacterial outer membrane; POPC; Lipid raft; Biology; Cell membrane; Sphingomyelin; Chemistry; Cholesterol; Biochemistry; Lipid bilayer; Biophysics; Microbiology; Escherichia coli; Immunology","score_opus":0.01400882113555608,"score_gpt":0.19933375591738717,"score_spread":0.1853249347818311,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058442785","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99796927,0.0013677564,0.0000044809835,0.00006058933,0.0001516589,0.00017917971,0.0000052817363,0.000012129383,0.00024963467],"genre_scores_gemma":[0.9993184,0.00031687086,0.00002843853,0.000013681376,0.00007342995,0.000016125718,0.000027755967,0.0000090188505,0.00019628168],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99934274,0.00015558567,0.00022700102,0.00008245671,0.000048134443,0.00014406432],"domain_scores_gemma":[0.9994596,0.00008587751,0.00020701591,0.00017706749,0.000059562488,0.000010843462],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022872392,0.00008726948,0.00019727935,0.000056050907,0.00005267781,0.0000059522636,0.00008450835,0.0000986793,0.00033397658],"category_scores_gemma":[0.000034340348,0.000057921312,0.00002587532,0.000035734378,0.00009657612,0.0002238883,0.00004109094,0.00010241324,0.000050382823],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016021648,0.0002902642,0.0022861827,0.00004193571,0.0003136947,2.8665958e-8,0.0013673335,3.1031257e-7,0.9887046,0.00008372753,0.000004985233,0.005304751],"study_design_scores_gemma":[0.00088012184,0.00018520115,0.0038307633,0.00010554791,0.00011032995,0.000014076974,0.00053567876,0.0000029646462,0.9924064,0.0000037041427,0.001862787,0.00006241705],"about_ca_topic_score_codex":0.00009962262,"about_ca_topic_score_gemma":0.000009043917,"teacher_disagreement_score":0.005242334,"about_ca_system_score_codex":0.000020398093,"about_ca_system_score_gemma":0.000024443421,"threshold_uncertainty_score":0.36568096},"labels":[],"label_agreement":null},{"id":"W2058909419","doi":"10.1016/j.molimm.2007.03.019","title":"Distinct role of MAPKAPK-2 in the regulation of TNF gene expression by Toll-like receptor 7 and 9 ligands","year":2007,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University; Montreal General Hospital","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"p38 mitogen-activated protein kinases; Cell biology; MAPK/ERK pathway; Regulation of gene expression; Toll-Like Receptor 9; Gene expression; Toll-like receptor; Biology; Reporter gene; Untranslated region; CpG site; TLR9; Messenger RNA; Signal transduction; Gene; Receptor; Molecular biology; Innate immune system; Genetics; DNA methylation","score_opus":0.0031893817307033392,"score_gpt":0.20300276347399185,"score_spread":0.1998133817432885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2058909419","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851173,0.013385749,0.00067391706,0.000121498895,0.00013861962,0.00019916554,0.0000067252954,0.000010848868,0.00034614213],"genre_scores_gemma":[0.9993682,0.00013752081,0.000109051725,0.000035359364,0.0000047926874,0.000010221015,0.00018053291,0.0000100757725,0.00014426705],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883944,0.00026308896,0.0004580275,0.00017157102,0.00004339307,0.00022446114],"domain_scores_gemma":[0.9992561,0.00014656495,0.00022364595,0.00031425327,0.000053653846,0.0000058279684],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006463162,0.00012406133,0.00024699862,0.00015415216,0.000057892554,0.0000035356948,0.00018840452,0.0002920716,0.00006461289],"category_scores_gemma":[0.00008222065,0.00009683131,0.000054322714,0.00015105892,0.00024045297,0.00005685284,0.00007273931,0.00017858304,0.000013050431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065078324,0.00007658134,0.0009034035,0.000009725692,0.000046982906,0.0000016311194,0.000824064,9.3618604e-7,0.9890989,0.00054414663,0.00018065317,0.0076622088],"study_design_scores_gemma":[0.00086937397,0.00022183722,0.03640549,0.000029765823,0.00001482428,0.00003952282,0.0004333386,0.0000019742222,0.9545376,0.00023140479,0.0071283253,0.00008656708],"about_ca_topic_score_codex":0.00006609173,"about_ca_topic_score_gemma":0.0000062076497,"teacher_disagreement_score":0.035502084,"about_ca_system_score_codex":0.000017253982,"about_ca_system_score_gemma":0.000020813686,"threshold_uncertainty_score":0.39486662},"labels":[],"label_agreement":null},{"id":"W2059124184","doi":"10.1164/rccm.200609-1250oc","title":"Gene Expression Profiling Identifies C/EBPδ as a Candidate Regulator of Endotoxin-induced Disseminated Intravascular Coagulation","year":2007,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Medicine; Regulator; Disseminated intravascular coagulation; Gene expression profiling; Coagulation; Gene expression; Profiling (computer programming); Computational biology; Bioinformatics; Intensive care medicine; Gene; Pathology; Internal medicine; Genetics; Biology","score_opus":0.010461595833128213,"score_gpt":0.2976968533992087,"score_spread":0.2872352575660805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059124184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897343,0.008864462,0.0007156264,0.00015706348,0.0003217959,0.00011353158,0.0000022585407,0.000010490956,0.00008047747],"genre_scores_gemma":[0.999576,0.0000630748,0.00011056084,0.00009875424,0.000110787,0.0000020282805,0.0000123393165,0.000011616748,0.000014871463],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833876,0.00034565947,0.0007791418,0.00015211302,0.00015035416,0.00023396254],"domain_scores_gemma":[0.99833226,0.0004505739,0.00039120467,0.00017124887,0.0005798883,0.0000748114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012202141,0.00014811568,0.0004963536,0.0002768009,0.00012383207,0.0000069882876,0.00011520122,0.00011060111,0.000084413274],"category_scores_gemma":[0.0012680617,0.00010930217,0.00007989962,0.00019874806,0.00083892496,0.00015945829,0.000030428946,0.000292514,0.0000031329062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00112746,0.000023708933,0.0014025561,0.000062744955,0.000056878143,0.00005351532,0.0015265452,6.743273e-7,0.96398866,0.00022221426,0.000033884717,0.031501185],"study_design_scores_gemma":[0.0010358427,0.0027085785,0.0077736913,0.0003877761,0.00012811374,0.00023457852,0.011381274,5.767565e-7,0.9756031,0.00006255215,0.0005774614,0.00010645559],"about_ca_topic_score_codex":0.000034066856,"about_ca_topic_score_gemma":0.000002487528,"teacher_disagreement_score":0.031394728,"about_ca_system_score_codex":0.000035982128,"about_ca_system_score_gemma":0.00008951505,"threshold_uncertainty_score":0.44572133},"labels":[],"label_agreement":null},{"id":"W2059241056","doi":"10.1016/j.healun.2003.11.272","title":"Alterations in gene expression of toll-like receptors in human lung transplantation","year":2004,"lang":"en","type":"article","venue":"The Journal of Heart and Lung Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; University Health Network","funders":"","keywords":"Receptor; Innate immune system; Immunology; Biology; Acquired immune system; Toll; Pattern recognition receptor; Immune system; Immunity; Transplantation; Cell biology; Cytokine; Toll-like receptor; Endogeny; Gene; Medicine; Genetics","score_opus":0.007964720266214542,"score_gpt":0.25303286399533004,"score_spread":0.2450681437291155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059241056","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580103,0.0015703961,0.0018887043,0.00032332423,0.00021848378,0.0001599953,0.000003517583,0.0000039666147,0.000030564075],"genre_scores_gemma":[0.99746585,0.0022260929,0.00016720478,0.000025687863,0.000015527125,0.0000028186319,0.00006128644,0.0000055633495,0.000029997744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989543,0.0002914084,0.0005270126,0.00006224567,0.00005226507,0.00011279781],"domain_scores_gemma":[0.99962205,0.00010485757,0.00016109712,0.00006152109,0.00004099442,0.000009455007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064647006,0.00008247857,0.00017672678,0.00025093442,0.00009938622,0.000006438899,0.000064068554,0.000094686584,0.000026935402],"category_scores_gemma":[0.00000578252,0.00006084074,0.000040251016,0.0001125623,0.000050659124,0.00027811463,0.000002451185,0.00020743131,0.0000014684771],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013107802,0.00005132865,0.0028693988,0.00007833856,0.0000149650705,0.0000054078173,0.01093658,0.0015925538,0.98290026,0.00009891825,0.000035634406,0.00010586124],"study_design_scores_gemma":[0.0030801615,0.00017254609,0.055151276,0.00047276032,0.000079325,0.00042288066,0.0003797633,0.000016391288,0.93995494,0.00014774365,0.000048608526,0.00007359452],"about_ca_topic_score_codex":0.00012604857,"about_ca_topic_score_gemma":0.00012531655,"teacher_disagreement_score":0.05228188,"about_ca_system_score_codex":0.00003266532,"about_ca_system_score_gemma":0.000044552144,"threshold_uncertainty_score":0.24810134},"labels":[],"label_agreement":null},{"id":"W2059391844","doi":"10.1074/jbc.m312431200","title":"Dual Receptors and Distinct Pathways Mediate Interleukin-1 Receptor-associated Kinase Degradation in Response to Lipopolysaccharide","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre; Vancouver Coastal Health Research Institute; University of British Columbia","funders":"","keywords":"Lipopolysaccharide; TLR4; Phosphatidylinositol; Cell biology; Signal transduction; CD14; Receptor; Kinase; Biology; Agonist; Immunology; Biochemistry","score_opus":0.016245998578228203,"score_gpt":0.23309841435259954,"score_spread":0.21685241577437134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059391844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979633,0.0005715897,0.000037193033,0.0009646301,0.0003093333,0.00008215345,0.000010742176,0.000019590332,0.00004147976],"genre_scores_gemma":[0.99940807,0.00015374504,0.00009808892,0.00007309939,0.000053216852,0.000005128063,0.00004904418,0.0000075613066,0.00015203429],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985555,0.0002948428,0.00065571937,0.00017987039,0.00005688891,0.00025719233],"domain_scores_gemma":[0.9990218,0.00033618236,0.0003682422,0.00010483415,0.00011022993,0.00005868516],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013064018,0.00016607382,0.0003365971,0.00010220828,0.00007003003,0.00001830759,0.00015361373,0.00038737443,0.00021136743],"category_scores_gemma":[0.0032564604,0.00012283561,0.00008972241,0.0001442654,0.000119651864,0.000103946266,0.000076169155,0.00047029916,0.00004096269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038678786,0.0001425064,0.0019907819,0.0000062724075,0.000038671653,0.000033039072,0.00033424213,0.000005622528,0.99092233,0.000012032221,0.00014789219,0.002498747],"study_design_scores_gemma":[0.0019357216,0.0006848149,0.018594328,0.0001537196,0.000011819038,0.000118112046,0.0004172432,3.1268436e-7,0.97544247,0.00019151738,0.0022839457,0.0001659849],"about_ca_topic_score_codex":0.000015881242,"about_ca_topic_score_gemma":0.000005265416,"teacher_disagreement_score":0.016603546,"about_ca_system_score_codex":0.00025083797,"about_ca_system_score_gemma":0.00011440744,"threshold_uncertainty_score":0.5009091},"labels":[],"label_agreement":null},{"id":"W2059717570","doi":"10.1007/s10875-014-9996-4","title":"Fatal Pneumococcal Meningitis in a 7-Year-Old Girl with Interleukin-1 Receptor Activated Kinase Deficiency (IRAK-4) Despite Prophylactic Antibiotic and IgG Responses to Streptococcus Pneumoniae Vaccines","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Izaak Walton Killam Health Centre; Dalhousie University","funders":"","keywords":"Medicine; Streptococcus pneumoniae; Meningitis; Immunology; Vaccination; Pneumococcal polysaccharide vaccine; Pneumococcal vaccine; Neutropenia; Antibiotics; Internal medicine; Pediatrics; Chemotherapy; Microbiology","score_opus":0.017355615700544433,"score_gpt":0.2993316985993356,"score_spread":0.28197608289879117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059717570","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963707,0.00075466774,0.00013398711,0.0012667043,0.0009125523,0.00043706025,0.000005066511,0.000032333945,0.00008692758],"genre_scores_gemma":[0.99883235,0.00021539403,0.000293888,0.00009703597,0.00009184152,0.000010224332,0.000009313212,0.00003399157,0.00041593955],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9949336,0.0020063226,0.0019471337,0.0004420522,0.00009926231,0.0005716261],"domain_scores_gemma":[0.9961682,0.0019013264,0.0010811166,0.0004075791,0.000358514,0.00008325655],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022648554,0.00034149995,0.0011125697,0.0006825003,0.00014214344,0.000056003613,0.00043731273,0.00053098286,0.0001072277],"category_scores_gemma":[0.004371344,0.0002532073,0.00018328558,0.00042169797,0.00039731993,0.00039599373,0.00019166179,0.0013362035,0.00013920918],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013012382,0.0003980848,0.06717557,0.000028745686,0.00022553612,0.00006550586,0.00039791127,0.000008028005,0.89172435,0.00013937497,0.000052093463,0.026772423],"study_design_scores_gemma":[0.008132703,0.016076397,0.6350011,0.0005189595,0.00013831609,0.0008572959,0.0006050444,0.000008419878,0.3334219,0.000090185094,0.004670752,0.00047891604],"about_ca_topic_score_codex":0.00003997333,"about_ca_topic_score_gemma":0.00003160459,"teacher_disagreement_score":0.56782556,"about_ca_system_score_codex":0.00008022273,"about_ca_system_score_gemma":0.00025455764,"threshold_uncertainty_score":0.999992},"labels":[],"label_agreement":null},{"id":"W2059740732","doi":"10.1371/journal.pone.0005644","title":"HIV-1 RNA Dysregulates the Natural TLR Response to Subclinical Endotoxemia in Kenyan Female Sex-Workers","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; McMaster University; Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network; University of Manitoba; Bill and Melinda Gates Foundation","keywords":"TLR4; Peripheral blood mononuclear cell; Immunology; Proinflammatory cytokine; Immune system; Ex vivo; Subclinical infection; Viral load; Medicine; Biology; Cytokine; Pathogenesis; In vivo; Inflammation; Internal medicine; In vitro; Human immunodeficiency virus (HIV)","score_opus":0.02183794332630182,"score_gpt":0.24850864754964735,"score_spread":0.22667070422334554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059740732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879019,0.0010642259,0.0000042078495,0.009823785,0.00013171729,0.0004593086,0.000003530886,0.00007356698,0.00053772447],"genre_scores_gemma":[0.9865446,0.000036649122,0.00012287802,0.0008263154,0.0000507965,0.000027659209,0.000042018808,0.000012805024,0.01233628],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800855,0.00078549515,0.00043912482,0.00027217646,0.00007356172,0.000421064],"domain_scores_gemma":[0.9985723,0.000814631,0.00008874891,0.0004481123,0.00005102071,0.000025204217],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001060655,0.00017411514,0.00032002944,0.0001571158,0.00016003105,0.000024542709,0.00033292687,0.00023687904,0.00019703906],"category_scores_gemma":[0.000822121,0.0001298595,0.0000861887,0.00024843894,0.00011077218,0.000107124935,0.000064689135,0.00054149074,0.0013385633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0064280056,0.0003781844,0.004171694,0.0000052735813,0.0001128262,0.0000118863845,0.001055187,0.00000871606,0.98450667,0.00009125838,0.0010525289,0.0021777728],"study_design_scores_gemma":[0.001392871,0.00040478987,0.18788376,0.00013823541,0.00004234832,0.000012042046,0.00032403783,0.000021570957,0.8058097,0.00008810582,0.0036780753,0.00020446342],"about_ca_topic_score_codex":0.000020581227,"about_ca_topic_score_gemma":0.000012336779,"teacher_disagreement_score":0.18371208,"about_ca_system_score_codex":0.00007233295,"about_ca_system_score_gemma":0.00007585059,"threshold_uncertainty_score":0.999439},"labels":[],"label_agreement":null},{"id":"W2059812027","doi":"10.1074/jbc.m114.618496","title":"Scaffold Protein JLP Is Critical for CD40 Signaling in B Lymphocytes","year":2015,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Internalization; Cell biology; CD154; CD40; Biology; MAPK/ERK pathway; Signal transduction; Signal transducing adaptor protein; Scaffold protein; Receptor; Biochemistry; Cytotoxic T cell","score_opus":0.04280807154360395,"score_gpt":0.2867446657565537,"score_spread":0.24393659421294978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059812027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99500144,0.0033954042,0.00019135192,0.0007796075,0.00010723778,0.00009799443,0.000005113314,0.0000102746,0.00041160997],"genre_scores_gemma":[0.99892277,0.000025346577,0.0004778882,0.00011588144,0.00011719324,0.000011101026,0.0000108178965,0.0000054231264,0.00031358257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998988,0.00009149749,0.0005171062,0.000121058074,0.0000401491,0.00024219911],"domain_scores_gemma":[0.9991861,0.00028118628,0.00018638736,0.000087124696,0.00021987518,0.000039317365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008071466,0.000115051684,0.00029494104,0.000038929895,0.000041279807,0.0000138787045,0.00018790255,0.00038191458,0.00022064665],"category_scores_gemma":[0.0017098481,0.00008001863,0.00013909946,0.00006983251,0.0001358547,0.00008291764,0.000035946232,0.00021702165,0.000026488073],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011381232,0.00009080622,0.00044820734,0.000024497333,0.000028807368,0.000013002288,0.00008699029,0.0000033029467,0.99636734,0.000071201364,0.0009107151,0.00081699505],"study_design_scores_gemma":[0.001694874,0.00032837404,0.0001859094,0.000098723576,0.000010641067,0.00019606875,0.00035715182,0.0000056050544,0.98539084,0.0011045947,0.010519582,0.0001076485],"about_ca_topic_score_codex":0.0000024203473,"about_ca_topic_score_gemma":7.525899e-8,"teacher_disagreement_score":0.010976524,"about_ca_system_score_codex":0.000096515505,"about_ca_system_score_gemma":0.0001607133,"threshold_uncertainty_score":0.32630652},"labels":[],"label_agreement":null},{"id":"W2059878343","doi":"10.1016/j.jim.2011.11.011","title":"Optimization of a whole blood intracellular cytokine assay for measuring innate cell responses to mycobacteria","year":2011,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Wellcome Trust; American Educational Research Association","keywords":"Innate immune system; Biology; CD14; Monocyte; CD11c; Cytokine; Immunology; Intracellular; Flow cytometry; Green fluorescent protein; Myeloid; TLR2; Cell biology; Immune system; Biochemistry","score_opus":0.05648657769317325,"score_gpt":0.30417238892553866,"score_spread":0.2476858112323654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2059878343","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.67027,0.0031673869,0.32533762,0.00012419307,0.00061302807,0.00025661115,0.0000080493855,0.00001821308,0.0002048594],"genre_scores_gemma":[0.51096624,0.00024356875,0.4882256,0.00004278626,0.000037572492,0.000016812346,0.000008424391,0.00001920355,0.00043980413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961185,0.00226705,0.00108773,0.000167713,0.000059573085,0.0002994299],"domain_scores_gemma":[0.99725926,0.00094830064,0.00090784236,0.00025009378,0.00060450984,0.000030002779],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0052347425,0.00019259674,0.00060387596,0.00037849369,0.000104458035,0.000014234201,0.00038968702,0.00036073755,0.0003016353],"category_scores_gemma":[0.003607627,0.00014344792,0.00025119958,0.0002410409,0.00011483364,0.00020562533,0.00010310302,0.00036236332,0.000015125815],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068487003,0.00030549758,0.000095249496,0.000026940483,0.00028010755,0.0000074987865,0.0006485873,0.00012551835,0.9746659,0.00013488888,0.000034588986,0.016826559],"study_design_scores_gemma":[0.0019191109,0.0026717507,0.0032843673,0.00009170771,0.00017221557,0.00013107098,0.00022980038,0.000018977926,0.984585,0.0002547377,0.0064816023,0.00015965184],"about_ca_topic_score_codex":0.0000054811608,"about_ca_topic_score_gemma":1.1478369e-7,"teacher_disagreement_score":0.16288798,"about_ca_system_score_codex":0.00003805938,"about_ca_system_score_gemma":0.000089321235,"threshold_uncertainty_score":0.5849636},"labels":[],"label_agreement":null},{"id":"W2060075310","doi":"10.1165/rcmb.2008-0301oc","title":"Innate Immune Processes Are Sufficient for Driving Cigarette Smoke–Induced Inflammation in Mice","year":2009,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":106,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Neutrophilia; Immunology; Chemokine; Inflammation; Immune system; Bronchoalveolar lavage; Macrophage inflammatory protein; FOXP3; Macrophage; Eotaxin; Biology; Lung; Medicine; Internal medicine; In vitro","score_opus":0.008248540082494196,"score_gpt":0.24956536424849912,"score_spread":0.24131682416600492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060075310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99198437,0.005629347,0.001453335,0.0005262641,0.00015514334,0.00019148343,0.0000018035638,0.000009799423,0.000048431153],"genre_scores_gemma":[0.99913335,0.00016323297,0.00009168127,0.00053904066,0.000031594125,0.0000075198977,0.000009609345,0.000009992757,0.000014009274],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985112,0.00035598862,0.00062848063,0.00018494425,0.000033746375,0.00028563294],"domain_scores_gemma":[0.9985849,0.00013623975,0.00087325834,0.00011857895,0.0002603124,0.000026658696],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064636854,0.00016618874,0.00041993175,0.00036330541,0.00008516728,0.0000140928405,0.00017000534,0.00014093827,0.000005316397],"category_scores_gemma":[0.0002901941,0.00014212023,0.00008843348,0.00025363296,0.00016003574,0.00009637537,0.000025416713,0.0002652453,0.0000020637056],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042867713,0.000048231384,0.0012030661,0.000018320685,0.000037949507,0.000012604311,0.00036651004,0.000018502631,0.96398556,0.000101856574,0.000018113473,0.033760615],"study_design_scores_gemma":[0.0013818116,0.0028132119,0.013420286,0.00008093266,0.000034084336,0.000052016338,0.0005784362,0.000003537194,0.973074,0.00013407652,0.0082502775,0.00017730182],"about_ca_topic_score_codex":0.0000102553995,"about_ca_topic_score_gemma":0.0000042522,"teacher_disagreement_score":0.033583313,"about_ca_system_score_codex":0.000036870344,"about_ca_system_score_gemma":0.00015427417,"threshold_uncertainty_score":0.5795495},"labels":[],"label_agreement":null},{"id":"W2060668169","doi":"10.1007/s00423-010-0658-6","title":"Endotoxin elimination in sepsis: physiology and therapeutic application","year":2010,"lang":"en","type":"review","venue":"Langenbeck s Archives of Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Sepsis; Detoxification (alternative medicine); Septic shock; Pathogenesis; Immunology; Medicine; Lipopolysaccharide; Inflammatory response; Inflammation; Pharmacology","score_opus":0.03193591182212212,"score_gpt":0.2842719885448726,"score_spread":0.2523360767227505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060668169","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0053983065,0.99362165,0.000031775893,0.000024549709,0.0001976893,0.00043964759,0.000022000371,0.000022616918,0.00024178778],"genre_scores_gemma":[0.0069754063,0.9917435,0.000025284953,0.000014588633,0.00003924448,0.00019091538,0.0007091423,0.000024225408,0.0002776592],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984361,0.0004807063,0.0005781819,0.0002681909,0.000023138356,0.00021366792],"domain_scores_gemma":[0.9976334,0.0016283449,0.0004260715,0.00028896026,0.000013297309,0.000009900746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002652012,0.00022501897,0.0010421448,0.0005344952,0.000039426308,0.0000057480383,0.00013515215,0.00038798898,0.000032127587],"category_scores_gemma":[0.00006611949,0.00018586089,0.00022644213,0.00012897827,0.00018996447,0.000055836328,0.000058363803,0.00040581907,0.00004722619],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000043459488,0.00004210297,0.000048928625,0.0021075602,0.000081698854,8.403397e-7,0.00014872865,9.3884566e-8,0.04569285,0.0003728418,0.00001810653,0.9514428],"study_design_scores_gemma":[0.00016959028,0.000021507423,0.004109485,0.0016873003,0.00015269725,0.000035227138,0.000019141393,0.0000035967007,0.004353389,0.0003123667,0.98889196,0.00024376567],"about_ca_topic_score_codex":0.000043418444,"about_ca_topic_score_gemma":0.00001842946,"teacher_disagreement_score":0.98887384,"about_ca_system_score_codex":0.000009713858,"about_ca_system_score_gemma":0.00009249289,"threshold_uncertainty_score":0.7579187},"labels":[],"label_agreement":null},{"id":"W2060800255","doi":"10.1016/s0264-410x(00)00208-5","title":"Oral, intrarectal and intranasal immunizations using CpG and non-CpG oligodeoxynucleotides as adjuvants","year":2000,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":158,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"CpG Oligodeoxynucleotide; Adjuvant; Nasal administration; Toxoid; Immune system; Antigen; Immunology; Medicine; CpG site; Tetanus; Immunization; Antibody; Vaccination; Biology","score_opus":0.006817715667961458,"score_gpt":0.23370588873500805,"score_spread":0.2268881730670466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060800255","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959976,0.0024937538,0.00016915004,0.00035100488,0.00013798742,0.0001596041,0.000007229531,0.00005008033,0.00063359784],"genre_scores_gemma":[0.99712175,0.0014176576,0.00016468872,0.00012326332,0.000030001005,0.000008343521,0.00006356285,0.000018197656,0.0010525134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992027,0.00010542433,0.0002487749,0.00018926086,0.000020396355,0.00023339696],"domain_scores_gemma":[0.9996509,0.00006177573,0.000050734354,0.00017258471,0.000041359177,0.000022663697],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00013664165,0.0001513242,0.00022599778,0.00012164143,0.00028448476,0.00003227131,0.00008178504,0.00015191548,0.0024942267],"category_scores_gemma":[0.00004095924,0.00013754437,0.00002560336,0.00015075452,0.00004313903,0.0002519827,0.00004569596,0.00016339443,0.00017728494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009485574,0.00009420762,0.0047765593,0.000029309387,0.00025398246,0.000013457849,0.0011500253,0.000054192282,0.8930683,0.0005701487,0.0019194476,0.09712179],"study_design_scores_gemma":[0.011087345,0.0011398003,0.2681318,0.000320939,0.00040613068,0.0018488251,0.00094342465,0.002096611,0.6405651,0.0012704895,0.07097169,0.001217827],"about_ca_topic_score_codex":0.000304011,"about_ca_topic_score_gemma":0.000029653498,"teacher_disagreement_score":0.26335523,"about_ca_system_score_codex":0.000014302733,"about_ca_system_score_gemma":0.000034788598,"threshold_uncertainty_score":0.9984176},"labels":[],"label_agreement":null},{"id":"W2060806856","doi":"10.1189/jlb.0703314","title":"Burn injury induces a change in T cell homeostasis affecting preferentially CD4+ T cells","year":2004,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Armand Frappier Museum; Institut National de la Recherche Scientifique","funders":"","keywords":"Biology; Homeostasis; Cell biology; Cd4 t cell; T cell; Immunology; Immune system","score_opus":0.02353002160503824,"score_gpt":0.27300615453831273,"score_spread":0.24947613293327447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2060806856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918189,0.0058939643,0.000095721756,0.0002982199,0.0014691551,0.0001792392,0.0000041743733,0.000015065735,0.0002255562],"genre_scores_gemma":[0.9979966,0.001445177,0.0001410266,0.00013601455,0.00018068685,0.000006363133,0.0000145860095,0.000014467322,0.000065062144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99823576,0.00045866286,0.0007109418,0.00016962932,0.000036972335,0.00038801518],"domain_scores_gemma":[0.9988858,0.00014163689,0.0006732205,0.0001528346,0.000120009565,0.000026513544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076272513,0.0001912165,0.00046978178,0.0005499711,0.00008468216,0.000015201662,0.00028058258,0.00045092593,0.00015343989],"category_scores_gemma":[0.000086479835,0.00015348145,0.00015861748,0.00020535816,0.00010202619,0.00026079788,0.00007889496,0.00063041894,0.00014496583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00083782437,0.00014276509,0.00061084377,0.000020168887,0.00007546352,0.000017714126,0.001558066,0.000012029041,0.9777453,0.00008542021,0.00006509472,0.018829323],"study_design_scores_gemma":[0.0026161533,0.0012558473,0.0069398563,0.00010126805,0.00003517762,0.00012234309,0.00027943292,3.236423e-7,0.9808591,0.00022772331,0.0073935534,0.00016920659],"about_ca_topic_score_codex":0.00018101583,"about_ca_topic_score_gemma":0.00003880668,"teacher_disagreement_score":0.018660117,"about_ca_system_score_codex":0.00017622244,"about_ca_system_score_gemma":0.0002104559,"threshold_uncertainty_score":0.6258792},"labels":[],"label_agreement":null},{"id":"W2061000814","doi":"10.1100/2011/131539","title":"Regulation of Neutrophil Survival/Apoptosis by Mcl-1","year":2011,"lang":"en","type":"review","venue":"The Scientific World JOURNAL","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":83,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Apoptosis; Inflammation; Immunology; Granulocyte; Leukemia; Myeloid; Myeloid leukemia; Biology; Cancer research; Medicine; Genetics","score_opus":0.042276809517504746,"score_gpt":0.279229004592722,"score_spread":0.23695219507521725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061000814","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001944454,0.9911452,0.00003067291,0.000091440976,0.0064884243,0.0002898628,0.000026954214,0.000018673283,0.0017143541],"genre_scores_gemma":[0.0006155389,0.92035675,0.000010438561,0.0000057067186,0.00009922715,0.000009782048,0.0001996605,0.000027580589,0.07867529],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99682224,0.0014001674,0.0010445026,0.00026223692,0.00010614831,0.00036469428],"domain_scores_gemma":[0.9975586,0.0002331971,0.0013286074,0.00065189006,0.00020505197,0.000022671753],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0031556874,0.00028252578,0.000903767,0.0005577845,0.00077851076,0.0001129171,0.0008568427,0.00022655826,0.0019084652],"category_scores_gemma":[0.00008169764,0.00016677169,0.0005824563,0.0007682283,0.0005964216,0.00016690257,0.00011439675,0.0008309846,0.00086838973],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000065627464,0.00007901529,9.0503715e-7,0.0005379791,0.0005177296,3.6047928e-7,0.00029120638,6.8988766e-7,0.02032643,0.0020451646,0.12123412,0.8549008],"study_design_scores_gemma":[0.0001839452,0.000028287992,0.000008141214,0.0016982623,0.00048926,0.000105212974,0.000020202517,2.2138826e-7,0.0057440945,0.00023345536,0.99132127,0.00016767721],"about_ca_topic_score_codex":0.000011090071,"about_ca_topic_score_gemma":0.0000044440035,"teacher_disagreement_score":0.87008715,"about_ca_system_score_codex":0.00007254177,"about_ca_system_score_gemma":0.00028465208,"threshold_uncertainty_score":0.9999095},"labels":[],"label_agreement":null},{"id":"W2061146935","doi":"10.1016/j.smim.2010.01.001","title":"Evolution of innate and adaptive immune recognition structures","year":2010,"lang":"en","type":"editorial","venue":"Seminars in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Health Sciences Centre; University of Toronto","funders":"","keywords":"Immune system; Biology; Antigen; Immune receptor; T-cell receptor; Acquired immune system; Signal transduction; Innate immune system; Cell biology; Receptor; Immunology; T cell; Genetics","score_opus":0.005249873056109667,"score_gpt":0.2247370655227933,"score_spread":0.21948719246668363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061146935","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3215334,0.07279593,0.00003206547,0.00004022857,0.60424584,0.00050173723,0.0001821724,0.000057559006,0.0006110599],"genre_scores_gemma":[0.84573334,0.039215833,0.0011340486,0.000021823342,0.09827403,0.00037318293,0.009978014,0.00028504452,0.004984695],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99734074,0.00064784137,0.00094483694,0.00050505984,0.00008449871,0.00047701172],"domain_scores_gemma":[0.99738353,0.0009881362,0.00078475644,0.0004990706,0.00033379463,0.000010704848],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0007460543,0.00042098016,0.000906427,0.0008569526,0.00012055507,0.000010684258,0.0003678095,0.0041675074,0.00022753813],"category_scores_gemma":[0.0014136604,0.0004270492,0.00012172108,0.0002540904,0.00092222635,0.0001710491,0.00025578422,0.002763123,0.000090515256],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033548502,0.000096476826,0.000042310166,0.000107723485,0.00038902846,0.000011963021,0.0009893742,0.0000013511816,0.8673313,0.0007255506,0.069789164,0.05716091],"study_design_scores_gemma":[0.0052998634,0.0019080378,0.0051550814,0.0013866595,0.0002623758,0.00017082282,0.001348835,0.000006042733,0.38621113,0.013631947,0.58347964,0.0011395803],"about_ca_topic_score_codex":0.00087217195,"about_ca_topic_score_gemma":0.00013968567,"teacher_disagreement_score":0.5241999,"about_ca_system_score_codex":0.00019117307,"about_ca_system_score_gemma":0.00037838498,"threshold_uncertainty_score":0.99981815},"labels":[],"label_agreement":null},{"id":"W2061514779","doi":"10.1182/blood-2005-06-2202","title":"Platelet Toll-like receptor expression modulates lipopolysaccharide-induced thrombocytopenia and tumor necrosis factor-α production in vivo","year":2005,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":475,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Blood Services; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; Canadian Blood Services","keywords":"Innate immune system; TLR4; TLR2; TLR9; Platelet; Biology; Lipopolysaccharide; Tumor necrosis factor alpha; Toll-like receptor; Immunology; In vivo; Receptor; Cytokine; Immune system; Gene expression; Biochemistry","score_opus":0.012299519627697666,"score_gpt":0.22901763306449824,"score_spread":0.21671811343680059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061514779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997848,0.0007892998,0.000002644027,0.000367352,0.00046534897,0.00035787243,0.000007857922,0.00008169893,0.000079967744],"genre_scores_gemma":[0.9987288,0.00014016296,0.00012526647,0.000055863155,0.000081850805,0.000039603492,0.00002468637,0.000019758483,0.00078398903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987846,0.00015850611,0.0003515141,0.00035880125,0.000042385564,0.0003041715],"domain_scores_gemma":[0.9995083,0.000048730843,0.00012681299,0.00025859452,0.000037427653,0.000020084308],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018256507,0.00019477252,0.00029312773,0.00015956414,0.0001634167,0.000029985193,0.00011970519,0.00021303736,0.0004761355],"category_scores_gemma":[0.00008525727,0.00017237157,0.000044987104,0.0000937971,0.000052264746,0.00042441816,0.000074571624,0.00024019534,0.00019982237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020523486,0.00019610485,0.00143132,0.000013280929,0.00003864675,0.000002140167,0.00088727195,0.000004165013,0.992077,0.000015772868,0.00041391558,0.0047151693],"study_design_scores_gemma":[0.0018912655,0.00011917913,0.0059784777,0.00007457266,0.000017913771,0.00007939111,0.00012448145,0.0000065790427,0.987457,0.000016941936,0.0040265587,0.0002076563],"about_ca_topic_score_codex":0.00009797856,"about_ca_topic_score_gemma":0.00004546057,"teacher_disagreement_score":0.004619995,"about_ca_system_score_codex":0.000033758388,"about_ca_system_score_gemma":0.00003229145,"threshold_uncertainty_score":0.70291084},"labels":[],"label_agreement":null},{"id":"W2061636798","doi":"10.1016/j.clim.2009.03.232","title":"T.98. Toll-like Receptor 7 Ligation Converts T Cell Autoreactivity into Overt Autoimmune Diabetes","year":2009,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"TLR7; Imiquimod; Cytokine; Immunology; CD19; Immune system; T cell; Antigen; Chemistry; Toll-like receptor; Medicine; Innate immune system","score_opus":0.013219299369120993,"score_gpt":0.28087107272211154,"score_spread":0.26765177335299056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061636798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9839129,0.0054081897,0.0001326237,0.0026056403,0.005154403,0.00042760477,0.0000054370107,0.00035661922,0.0019966033],"genre_scores_gemma":[0.9917765,0.0008872376,0.0001767456,0.0014187074,0.00012041758,0.000033588058,0.00041750973,0.000029748568,0.0051395465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958852,0.0012730118,0.0013629697,0.0006668795,0.00006933649,0.0007426219],"domain_scores_gemma":[0.9972379,0.0010890291,0.0005607692,0.0008972457,0.00017127173,0.000043762688],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012762184,0.00039838278,0.0009243998,0.00019837539,0.00031142076,0.000036590627,0.00052886305,0.0013402103,0.0012344972],"category_scores_gemma":[0.00067751465,0.000373632,0.00039177827,0.00023590736,0.00066432095,0.00043177727,0.0001654783,0.0011194688,0.0050557195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007956299,0.00069337426,0.002864918,0.000011680778,0.00030781562,0.0000048844445,0.0003653217,0.0000013714256,0.9202181,0.0006884958,0.010000159,0.06404824],"study_design_scores_gemma":[0.0036635052,0.0021293652,0.23245317,0.000065224194,0.0001246551,0.000018108109,0.00012112367,0.000051009047,0.49164894,0.0012658134,0.2678629,0.00059620873],"about_ca_topic_score_codex":0.00006139035,"about_ca_topic_score_gemma":0.000004086382,"teacher_disagreement_score":0.42856917,"about_ca_system_score_codex":0.00013183552,"about_ca_system_score_gemma":0.0002059692,"threshold_uncertainty_score":0.99995625},"labels":[],"label_agreement":null},{"id":"W2061967634","doi":"10.1371/journal.pone.0057426","title":"NF-κB-Dependent Role for Cold-Inducible RNA Binding Protein in Regulating Interleukin 1β","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University; University of Ottawa; Ottawa Hospital","funders":"National Cancer Institute; Ottawa Hospital Research Institute; Canadian Institutes of Health Research; Cancer Research Society","keywords":"Biology; Small interfering RNA; RNA; Cell biology; Molecular biology; Transfection; Cell culture; Biochemistry; Gene; Genetics","score_opus":0.027110757486999936,"score_gpt":0.21870007100256786,"score_spread":0.19158931351556793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061967634","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969926,0.00027187186,0.000026033753,0.00036649313,0.00006713532,0.0014666861,0.0000033272559,0.00006258353,0.00074329966],"genre_scores_gemma":[0.9858784,0.0000066963316,0.0005690824,0.000027775704,0.00003234782,0.00069288746,0.000045818393,0.000022096005,0.012724869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885845,0.00013874705,0.00036983687,0.00023242035,0.000045218552,0.00035532427],"domain_scores_gemma":[0.9994251,0.000104023944,0.00014272412,0.0002340724,0.00008058019,0.000013500729],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003876383,0.00013090798,0.00025206472,0.00019876353,0.00012304648,0.000033700704,0.00015998975,0.0002094407,0.00042742424],"category_scores_gemma":[0.0002124697,0.00012814267,0.00004879889,0.000109913395,0.000032194137,0.00025437912,0.000068713634,0.00022600901,0.0009800453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012126815,0.0002820954,0.00033790836,0.000056783923,0.00011137857,5.639193e-7,0.00045780896,0.00000165366,0.9961859,0.0004697012,0.00008853945,0.001886383],"study_design_scores_gemma":[0.0011986261,0.00019971323,0.0003075837,0.00037475984,0.00002101021,0.0000020374403,0.00042578086,0.00010460645,0.99666506,0.00026467847,0.0002837989,0.00015236589],"about_ca_topic_score_codex":0.00016372577,"about_ca_topic_score_gemma":0.000030976,"teacher_disagreement_score":0.011981569,"about_ca_system_score_codex":0.00010043033,"about_ca_system_score_gemma":0.000042229967,"threshold_uncertainty_score":0.9997978},"labels":[],"label_agreement":null},{"id":"W2061990495","doi":"10.1007/s00262-008-0586-2","title":"Paclitaxel reduces regulatory T cell numbers and inhibitory function and enhances the anti-tumor effects of the TLR9 agonist PF-3512676 in the mouse","year":2008,"lang":"en","type":"article","venue":"Cancer Immunology Immunotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":135,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada); Terry Fox Research Institute","funders":"","keywords":"Paclitaxel; FOXP3; CD8; TLR9; Cytotoxic T cell; Immune system; IL-2 receptor; Agonist; Cancer research; Biology; T cell; Immunology; Pharmacology; Receptor; Internal medicine; Medicine; Cancer; Gene expression; In vitro","score_opus":0.005736430475352894,"score_gpt":0.21111194420224988,"score_spread":0.205375513726897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2061990495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85662705,0.14071321,0.000006777556,0.0008553277,0.0010267361,0.00061943044,0.000004917856,0.000025349262,0.00012116585],"genre_scores_gemma":[0.9757733,0.022435026,0.000003833182,0.0006072258,0.00003908338,0.00018787623,0.000008527262,0.00002517042,0.00091996253],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748635,0.0012635958,0.00048303363,0.00031631117,0.000076308716,0.00037441935],"domain_scores_gemma":[0.9983608,0.0005350142,0.00039533013,0.0006370743,0.00006404327,0.000007740712],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005956704,0.0002844759,0.0003853171,0.00010704639,0.00079279003,0.000021611128,0.0004527865,0.00027001346,0.00004610863],"category_scores_gemma":[0.00005191299,0.0001583365,0.00011619337,0.00025160148,0.0024799542,0.00019114719,0.00008571863,0.0005932021,0.000011780238],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075909117,0.000089505746,0.0033653048,0.000035932808,0.00024932536,0.0000021515416,0.0059314584,0.0000024313572,0.98471034,0.00019245231,0.0007367035,0.0039252825],"study_design_scores_gemma":[0.0020633521,0.00022469007,0.25789732,0.000064814085,0.00003985172,0.00009385209,0.0012090923,6.402719e-7,0.72714895,0.000100917554,0.010997613,0.00015889821],"about_ca_topic_score_codex":0.00052595633,"about_ca_topic_score_gemma":0.00004475018,"teacher_disagreement_score":0.25756142,"about_ca_system_score_codex":0.000059107788,"about_ca_system_score_gemma":0.00016968703,"threshold_uncertainty_score":0.9137494},"labels":[],"label_agreement":null},{"id":"W2062191416","doi":"10.1111/j.1365-2141.2005.05893.x","title":"Differential immune effects mediated by Toll‐like receptors stimulation in precursor B‐cell acute lymphoblastic leukaemia","year":2005,"lang":"en","type":"article","venue":"British Journal of Haematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"TLR9; TLR2; Immune system; Immunology; Receptor; T cell; Immunogenicity; Toll-like receptor; Biology; Immune tolerance; Cancer research; Innate immune system; Medicine; Internal medicine; Gene expression","score_opus":0.002975571795830646,"score_gpt":0.20532692617898107,"score_spread":0.20235135438315044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062191416","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98435646,0.012351559,0.0006741733,0.00022442908,0.0020027542,0.0002494379,0.000007520569,0.00002760367,0.00010604405],"genre_scores_gemma":[0.9974604,0.0010754502,0.00011426503,0.000075471435,0.000049808215,0.000011154672,0.000162024,0.000026242747,0.001025175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974166,0.000736124,0.0011126541,0.00020550942,0.000083887426,0.00044517993],"domain_scores_gemma":[0.9984486,0.00058505475,0.0006550368,0.00013809821,0.00013377822,0.000039436374],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032809124,0.00021498442,0.0007852145,0.00031030958,0.00011592553,0.00003097989,0.0002850591,0.00049276033,0.00066634046],"category_scores_gemma":[0.00027337743,0.0002320434,0.00017129164,0.00016705637,0.00015020919,0.00034207947,0.000056825604,0.000538734,0.00029796676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017857766,0.00054437586,0.00065683434,0.00008563937,0.00037015293,0.0017626454,0.0004473554,0.00008866807,0.94447714,0.00003248323,0.029364811,0.020384097],"study_design_scores_gemma":[0.018127708,0.001091024,0.011771916,0.0007952338,0.00035095302,0.06817986,0.00010937448,0.00026540528,0.87971896,0.00009813749,0.018864324,0.0006271259],"about_ca_topic_score_codex":0.00004656801,"about_ca_topic_score_gemma":0.000036616795,"teacher_disagreement_score":0.06641722,"about_ca_system_score_codex":0.00014790184,"about_ca_system_score_gemma":0.00013208162,"threshold_uncertainty_score":0.9462455},"labels":[],"label_agreement":null},{"id":"W2062428616","doi":"10.1067/msy.2000.108060","title":"Liposomal antioxidants provide prolonged protection against acute respiratory distress syndrome","year":2000,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital","funders":"","keywords":"Medicine; Bronchoalveolar lavage; Lung; Myeloperoxidase; Acetylcysteine; Pharmacology; ARDS; Resuscitation; Respiratory distress; Anesthesia; Albumin; Immunology; Internal medicine; Inflammation; Antioxidant","score_opus":0.014406628830705965,"score_gpt":0.21794358452999152,"score_spread":0.20353695569928557,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062428616","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968038,0.0008995596,0.000012588727,0.00020205509,0.0005753426,0.0005120292,0.00002281896,0.00020804495,0.00076371396],"genre_scores_gemma":[0.9942431,0.0001113653,0.0000047597164,0.00014017764,0.00004354926,0.00015414554,0.00015060953,0.000024227938,0.005128067],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983835,0.00043116993,0.00042459494,0.00029991678,0.00005531915,0.0004054954],"domain_scores_gemma":[0.9993624,0.00009894277,0.0001370225,0.00032845244,0.000051471816,0.000021682701],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044368912,0.00019113519,0.0003059979,0.00017606266,0.00026985217,0.000028379998,0.000117190735,0.00027938635,0.0006512744],"category_scores_gemma":[0.000087760534,0.00017479181,0.00015408396,0.00020880782,0.00012649248,0.00033023662,0.000024880157,0.00028318228,0.0019416399],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012607124,0.00012926631,0.0029604752,0.000047257083,0.0002490002,0.00015038413,0.00012713275,0.000005418939,0.7992572,0.00000945749,0.0024846296,0.19331902],"study_design_scores_gemma":[0.0010445897,0.00024676032,0.1692239,0.00024963537,0.00007730348,0.0005657979,0.000032363194,0.000009166203,0.6593214,0.00003651119,0.16861099,0.00058156694],"about_ca_topic_score_codex":0.000024798592,"about_ca_topic_score_gemma":0.0000064272804,"teacher_disagreement_score":0.19273746,"about_ca_system_score_codex":0.00004686054,"about_ca_system_score_gemma":0.00011190237,"threshold_uncertainty_score":0.99883544},"labels":[],"label_agreement":null},{"id":"W2062459184","doi":"10.1111/j.1365-2567.2008.02946.x","title":"Macrophage interleukin‐6 and tumour necrosis factor‐α are induced by coronavirus fixation to Toll‐like receptor 2/heparan sulphate receptors but not carcinoembryonic cell adhesion antigen 1a","year":2009,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Receptor; Tumor necrosis factor alpha; Toll-like receptor; Immunology; Carcinoembryonic antigen; Biology; Cancer research; Medicine; Internal medicine; Cancer; Innate immune system; Biochemistry","score_opus":0.016002910668542685,"score_gpt":0.2470087462992264,"score_spread":0.23100583563068372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062459184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98999906,0.0060377717,0.000041291554,0.0009336824,0.002008411,0.00064722175,0.00008568473,0.00017008124,0.00007678409],"genre_scores_gemma":[0.99407953,0.0011107794,0.000070644586,0.0007157282,0.00004136355,0.000039933024,0.0004050978,0.000043209922,0.003493723],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971254,0.0005886375,0.00072349294,0.0006901679,0.00008076202,0.00079153595],"domain_scores_gemma":[0.9987058,0.00014638308,0.0004303993,0.0005050607,0.00014760121,0.00006473299],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026908095,0.000483707,0.00066048617,0.0003619976,0.00037600784,0.000063374835,0.00042300436,0.0008050592,0.0006282307],"category_scores_gemma":[0.0001305899,0.00047644033,0.00014095516,0.00025946,0.00013476533,0.00032863318,0.00016074418,0.0006305312,0.0015989377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002196385,0.00012207062,0.00081187964,0.000013858986,0.00008983878,0.0000064944857,0.0010322307,0.0000010901495,0.97679555,0.00002771608,0.0028581168,0.016044788],"study_design_scores_gemma":[0.0018725913,0.0014067155,0.114868015,0.00006301112,0.000028940976,0.000041738076,0.00030786346,0.000002519225,0.8530462,0.000015821952,0.027902424,0.0004441562],"about_ca_topic_score_codex":0.0005020893,"about_ca_topic_score_gemma":0.000029929333,"teacher_disagreement_score":0.12374932,"about_ca_system_score_codex":0.00022563121,"about_ca_system_score_gemma":0.00007608591,"threshold_uncertainty_score":0.99976873},"labels":[],"label_agreement":null},{"id":"W2062478417","doi":"10.1111/j.1462-5822.2006.00763.x","title":"G-CSF-mediated inhibition of JNK is a key mechanism for Lactobacillus rhamnosus-induced suppression of TNF production in macrophages","year":2006,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":142,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lactobacillus rhamnosus; Tumor necrosis factor alpha; Biology; Microbiology; Lipopolysaccharide; Cytokine; Kinase; Cell biology; Immunology; Lactobacillus; Bacteria","score_opus":0.008895413245711829,"score_gpt":0.20953680641849254,"score_spread":0.2006413931727807,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062478417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966005,0.00089372613,0.00032835503,0.00037508676,0.0008231783,0.00076177204,0.00011069601,0.00003300647,0.00007365566],"genre_scores_gemma":[0.9971417,0.000056850517,0.00012484344,0.000039799077,0.000040420266,0.0000504302,0.0018158323,0.000022227161,0.0007078743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981226,0.00033175122,0.00078593736,0.00037377398,0.000022942153,0.00036300774],"domain_scores_gemma":[0.99883,0.00011890484,0.0004680372,0.0002972819,0.00027652484,0.000009258327],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040617332,0.0002190291,0.00049161003,0.00036119038,0.00007329043,0.000003847269,0.0001304466,0.00062477635,0.00015542007],"category_scores_gemma":[0.00015167471,0.0002036924,0.0001472392,0.0002206417,0.00017043712,0.000105739,0.000060816314,0.00019543711,0.00005999095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007805407,0.00020764908,0.00011129118,0.000117369826,0.00004650364,0.0000028105896,0.00039515027,0.0000036815077,0.9961839,0.0006772624,0.001113629,0.00036024433],"study_design_scores_gemma":[0.00215463,0.00036431546,0.000435749,0.00009454546,0.00003552495,0.000032744087,0.000115580755,0.0000060910006,0.99386084,0.0008118307,0.0019055146,0.00018262093],"about_ca_topic_score_codex":0.00019356303,"about_ca_topic_score_gemma":0.000040916355,"teacher_disagreement_score":0.0023230144,"about_ca_system_score_codex":0.000058772683,"about_ca_system_score_gemma":0.00007344189,"threshold_uncertainty_score":0.8306335},"labels":[],"label_agreement":null},{"id":"W2062835892","doi":"10.1016/j.cyto.2008.01.006","title":"LPS/TLR4 signal transduction pathway","year":2008,"lang":"en","type":"review","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3239,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto","funders":"","keywords":"TLR4; Proinflammatory cytokine; Signal transduction; Lipopolysaccharide; Toll-like receptor; Cell biology; Receptor; Stimulation; Immune system; Chemistry; Biology; Immunology; Innate immune system; Inflammation; Neuroscience; Biochemistry","score_opus":0.03086309541098331,"score_gpt":0.27086544017601694,"score_spread":0.24000234476503363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062835892","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00003943194,0.9964448,0.0001851482,0.000025404126,0.0010329928,0.00048702405,0.000052297808,0.00013212248,0.0016007811],"genre_scores_gemma":[0.00004820947,0.99056906,0.000022675105,0.000019201072,0.00022678175,0.0000910473,0.0019033385,0.000051572366,0.007068092],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981076,0.00045416053,0.0006733441,0.00036554507,0.000043136253,0.00035623077],"domain_scores_gemma":[0.9991191,0.00012643263,0.0002975749,0.00038265283,0.000056553392,0.00001771167],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016355292,0.0004171997,0.0012132638,0.00027604395,0.0002103313,0.000011839346,0.00025931819,0.00086278963,0.0024515172],"category_scores_gemma":[0.000031482723,0.00033458872,0.00059251225,0.00024052408,0.00014392196,0.00010867841,0.000035267818,0.0006152253,0.0048093344],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004215255,0.000047965943,1.10426505e-7,0.0010083434,0.00024958453,0.00001556107,0.00008205067,3.4736343e-7,0.0026647418,0.00019003174,0.004733546,0.99096555],"study_design_scores_gemma":[0.00036850543,0.000113390306,0.0000024284977,0.001593045,0.0002012606,0.0012642196,0.0000070177857,1.0603105e-7,0.00662299,0.00001405235,0.989476,0.0003369375],"about_ca_topic_score_codex":0.000010197896,"about_ca_topic_score_gemma":0.0000010851877,"teacher_disagreement_score":0.9906286,"about_ca_system_score_codex":0.000095274496,"about_ca_system_score_gemma":0.00029166235,"threshold_uncertainty_score":0.9999106},"labels":[],"label_agreement":null},{"id":"W2062866224","doi":"10.1016/j.vetimm.2008.08.001","title":"CD14+ cells are required for IL-12 response in bovine blood mononuclear cells activated with Toll-like receptor (TLR) 7 and TLR8 ligands","year":2008,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases","keywords":"CD14; Biology; Peripheral blood mononuclear cell; Immune system; TLR7; Innate immune system; Toll-like receptor; TLR2; Immunology; Receptor; Cytokine; Molecular biology; In vitro; Biochemistry","score_opus":0.014481941030985964,"score_gpt":0.21729686081365068,"score_spread":0.20281491978266472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062866224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99100083,0.0064169485,0.000048441725,0.0005471714,0.00083975255,0.0008612454,0.00007751128,0.00014682524,0.00006130244],"genre_scores_gemma":[0.99240243,0.004071722,0.00044475606,0.0002337186,0.000027957884,0.00021093916,0.00012709458,0.000082441664,0.0023989493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962046,0.0011178912,0.0008098842,0.00086420646,0.000049474285,0.0009539055],"domain_scores_gemma":[0.99805397,0.00064868137,0.00043614802,0.0006958749,0.00012157004,0.000043755208],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00084123336,0.0005939822,0.0010136955,0.0006224729,0.00069227157,0.00002383538,0.00034525982,0.0010406083,0.00010325464],"category_scores_gemma":[0.00014064337,0.00054790685,0.00010683251,0.00025709186,0.001489368,0.00041420772,0.00031015527,0.0007337349,0.00010220835],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.081927165,0.00030714524,0.00058665837,0.000049016853,0.00030334204,0.00048631983,0.0022152923,0.0000026216474,0.9128204,0.000028823179,0.00028698816,0.0009862204],"study_design_scores_gemma":[0.011485671,0.023499567,0.043616123,0.00014762398,0.00011372828,0.011545492,0.001219994,0.000006532425,0.88217294,0.000032249565,0.025387384,0.00077268144],"about_ca_topic_score_codex":0.00003895482,"about_ca_topic_score_gemma":0.0000044315434,"teacher_disagreement_score":0.0704415,"about_ca_system_score_codex":0.00006366374,"about_ca_system_score_gemma":0.00013597742,"threshold_uncertainty_score":0.99969727},"labels":[],"label_agreement":null},{"id":"W2062892895","doi":"10.1139/w10-002","title":"Effect of recombinant Panton–Valentine leukocidin in vitro on apoptosis and cytokine production of human alveolar macrophages","year":2010,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Science Foundation","keywords":"Bronchoalveolar lavage; Tumor necrosis factor alpha; Apoptosis; Cytokine; Necrosis; Microbiology; Interleukin 8; Flow cytometry; Pulmonary alveolus; Secretion; Leukocidin; Biology; Immunology; Cytotoxicity; Molecular biology; Chemistry; In vitro; Macrophage; Medicine; Internal medicine; Biochemistry; Lung; Staphylococcus aureus; Bacteria","score_opus":0.004843365065158082,"score_gpt":0.21934247310355304,"score_spread":0.21449910803839495,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062892895","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665266,0.0011826968,8.891745e-7,0.00029491892,0.0016571828,0.00016002773,0.000014154466,0.000002320069,0.00003513172],"genre_scores_gemma":[0.9995417,0.000088528825,0.000021491967,0.000016362603,0.000031261232,0.0000020188422,0.000042340016,0.00001046408,0.00024582565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984916,0.0004939243,0.0005935944,0.00014397388,0.000013239722,0.00026366996],"domain_scores_gemma":[0.99905354,0.00013591435,0.00048616313,0.00016580815,0.00012036237,0.000038186143],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001188239,0.00014383643,0.00050420885,0.00062427757,0.0000793578,0.000003793995,0.00016527149,0.00028056814,0.00012113272],"category_scores_gemma":[0.00030886033,0.00011698491,0.000097399825,0.00011851144,0.00036149888,0.000065525295,0.00001593032,0.0004948791,0.00000756596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076467084,0.000028850349,0.0024009391,0.00005639547,0.00008757168,0.000007642185,0.00023925003,0.0000011961278,0.99086607,0.000049570164,0.00050159235,0.004996267],"study_design_scores_gemma":[0.0014735714,0.0016088573,0.0047604423,0.00009390168,0.000047256803,0.00049737486,0.000038970833,1.3677155e-7,0.9879589,0.000018685849,0.0034122532,0.00008961289],"about_ca_topic_score_codex":0.0011424989,"about_ca_topic_score_gemma":0.0013149108,"teacher_disagreement_score":0.0049066544,"about_ca_system_score_codex":0.0000427971,"about_ca_system_score_gemma":0.00017376435,"threshold_uncertainty_score":0.47705063},"labels":[],"label_agreement":null},{"id":"W2062904789","doi":"10.1186/cc5166","title":"Tyrosine phosphorylation modulates rat vascular response to experimental endotoxemia in vivo and in vitro","year":2007,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Phosphorylation; Medicine; In vivo; Vascular smooth muscle; Nitric oxide; In vitro; Pharmacology; Contraction (grammar); Tyrosine phosphorylation; Tyrosine; Cell biology; Internal medicine; Smooth muscle; Biochemistry; Chemistry; Biology","score_opus":0.008326514990405055,"score_gpt":0.2729501605401806,"score_spread":0.2646236455497756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2062904789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99120194,0.007937154,0.00008314632,0.00021611543,0.0001881107,0.0002194905,0.0000030625727,0.000021163496,0.00012983652],"genre_scores_gemma":[0.9996083,0.000008108684,0.000112469286,0.00013074442,0.000011836037,0.000021431048,0.0000213065,0.000009837771,0.00007599305],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990435,0.00019086219,0.00024240934,0.00020560756,0.00003354121,0.00028405045],"domain_scores_gemma":[0.9994717,0.00031000873,0.000011550356,0.00013296267,0.000047472156,0.000026288493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004451909,0.00010793947,0.00016074692,0.00019289514,0.00005953287,0.000013681554,0.000055327644,0.00017527794,0.000100046935],"category_scores_gemma":[0.00044464838,0.00010989494,0.000032249452,0.00013786307,0.00009100276,0.00010390048,0.00004831512,0.00015281174,0.000027611335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005649196,0.00003580584,0.00064084074,0.000015119758,0.0000032088726,0.000024829875,0.0021597065,0.000005965242,0.99032146,0.0001350934,0.000028265207,0.0009805142],"study_design_scores_gemma":[0.0011053453,0.00012202037,0.0122110015,0.000036337227,0.000004528849,0.000012166227,0.003127037,0.000010309232,0.98112583,0.000015855501,0.0021061671,0.00012342921],"about_ca_topic_score_codex":0.000043902557,"about_ca_topic_score_gemma":0.000017069748,"teacher_disagreement_score":0.011570161,"about_ca_system_score_codex":0.00014490554,"about_ca_system_score_gemma":0.000022568633,"threshold_uncertainty_score":0.44813856},"labels":[],"label_agreement":null},{"id":"W2063209470","doi":"10.1016/j.it.2010.07.004","title":"Impaired Toll-like receptor 7 and 9 signaling: from chronic viral infections to cancer","year":2010,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":103,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institut National Du Cancer; Agence Nationale de Recherches sur le Sida et les Hépatites Virales; Institut National de la Santé et de la Recherche Médicale; EMBO; CNIB; Association pour la Recherche sur le Cancer; Breast Cancer Research Foundation","keywords":"TLR9; TLR7; Immunology; Biology; Toll-like receptor; Carcinogenesis; Cancer; Virus; Immune system; Receptor; Interferon; Virology; Innate immune system; Viral hepatitis; Cancer research; Gene; Gene expression","score_opus":0.024688907550537837,"score_gpt":0.3181120508620398,"score_spread":0.293423143311502,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063209470","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.012747901,0.98197323,0.000009550669,0.00015524433,0.0042157625,0.00041250396,0.00016289119,0.00011830827,0.00020462688],"genre_scores_gemma":[0.00075220683,0.9919778,0.000043564007,0.000044799483,0.00016267484,0.0006223072,0.0015766723,0.00007033465,0.004749602],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99686474,0.0007777599,0.0009577154,0.00068937463,0.00003503346,0.00067535514],"domain_scores_gemma":[0.9985063,0.00039732648,0.00037276963,0.00064596377,0.000045987323,0.00003164414],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00027321902,0.00059916195,0.0017959567,0.0013204578,0.00020708345,0.000030664723,0.00042671934,0.001953728,0.0040418766],"category_scores_gemma":[0.000082264756,0.0005381867,0.00031899472,0.0005550437,0.00030422775,0.0001241732,0.00028122257,0.0017352415,0.001128951],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000079061225,0.000075608936,0.00001485453,0.00014664629,0.0005336587,0.0000040530786,0.00026745436,9.0225086e-7,0.02809735,0.00010449059,0.0013304411,0.96934545],"study_design_scores_gemma":[0.00088814425,0.00038738264,0.00018859626,0.001492486,0.00031514143,0.000074907046,0.000019289484,3.9648444e-7,0.0011056348,0.00002434677,0.9949855,0.0005181665],"about_ca_topic_score_codex":0.0015568559,"about_ca_topic_score_gemma":0.0010417752,"teacher_disagreement_score":0.9936551,"about_ca_system_score_codex":0.00040222637,"about_ca_system_score_gemma":0.00041584836,"threshold_uncertainty_score":0.999707},"labels":[],"label_agreement":null},{"id":"W2063211660","doi":"10.1038/mt.2014.17","title":"Enriched Protein Screening of Human Bone Marrow Mesenchymal Stromal Cell Secretions Reveals MFAP5 and PENK as Novel IL-10 Modulators","year":2014,"lang":"en","type":"article","venue":"Molecular Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Allergy and Infectious Diseases; National Institutes of Health; B.P. Koirala Institute of Health Sciences; Western University; National Human Genome Research Institute; National Institute of Diabetes and Digestive and Kidney Diseases; Shriners Hospitals for Children","keywords":"Stromal cell; Biology; Bone marrow; Mesenchymal stem cell; Cell; Secretory protein; In vivo; In vitro; Molecular biology; Cell culture; Cell biology; Gene; Computational biology; Cancer research; Immunology; Biochemistry; Genetics","score_opus":0.009205371349678429,"score_gpt":0.230502938022534,"score_spread":0.22129756667285555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063211660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916469,0.0014125059,0.005235413,0.00016980259,0.000042971515,0.00043386547,0.000006684657,0.00003955638,0.0010122878],"genre_scores_gemma":[0.9961117,0.00002164083,0.000540353,0.000079060475,0.000015738437,0.000036697136,0.00011570053,0.00002714508,0.0030519608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986415,0.0003618318,0.0003503142,0.000310342,0.00006671479,0.00026929472],"domain_scores_gemma":[0.999219,0.00003982112,0.00020281765,0.00042825408,0.00008504192,0.00002506587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005934795,0.00019173491,0.00030375193,0.00014607367,0.00018892247,0.000017152097,0.0001444449,0.00023171617,0.00038743045],"category_scores_gemma":[0.00006216939,0.00018140445,0.000108616536,0.00011268011,0.00014349408,0.00008308939,0.00005121329,0.0001890897,0.000044497137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002618943,0.000080385405,0.000121370525,0.000015774713,0.00008966352,0.000002387592,0.00025521452,0.000009320249,0.9934791,0.0034178034,0.000039047667,0.002228083],"study_design_scores_gemma":[0.0023422865,0.00071868184,0.0045061545,0.00003217074,0.000019724459,0.000023002407,0.00007683919,0.000040739604,0.98817855,0.0004889015,0.0033710643,0.0002018686],"about_ca_topic_score_codex":0.000075384836,"about_ca_topic_score_gemma":0.0000013229615,"teacher_disagreement_score":0.005300489,"about_ca_system_score_codex":0.000011558369,"about_ca_system_score_gemma":0.000025405814,"threshold_uncertainty_score":0.7397459},"labels":[],"label_agreement":null},{"id":"W2063438040","doi":"10.1111/j.1574-695x.2003.tb00648.x","title":"Pro-inflammatory cytokine and chemokine release by human brain microvascular endothelial cells stimulated by<i>Streptococcus suis</i>serotype 2","year":2003,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":127,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Beijing Municipal Education Commission","keywords":"Chemokine; Cytokine; Streptococcus suis; Biology; Microbiology; Immunology; Serotype; Virology; Inflammation; Virulence; Gene","score_opus":0.0044558827734722025,"score_gpt":0.21565186969963412,"score_spread":0.21119598692616193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063438040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775256,0.017663505,0.00017221375,0.0014804403,0.0013052023,0.0010925847,0.00020704053,0.00027648656,0.0002769542],"genre_scores_gemma":[0.9867352,0.0010751178,0.000043517142,0.0016222072,0.000084505984,0.0001766855,0.0030897602,0.00011713686,0.0070558544],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.993991,0.0020396651,0.0013129656,0.0011372957,0.000087024455,0.0014320072],"domain_scores_gemma":[0.9977409,0.00059890957,0.00047544058,0.0008665769,0.00017416078,0.00014396515],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0014249488,0.0007724474,0.0011709296,0.00028407917,0.0005634189,0.000029485607,0.00071212236,0.0024785432,0.004172901],"category_scores_gemma":[0.000978136,0.0007089894,0.0002599921,0.00026916654,0.0023138497,0.0001463233,0.00029107867,0.0016571725,0.0010784895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045765983,0.00032342935,0.00081032154,0.00003778984,0.000851534,0.00005426517,0.00017816167,6.0456335e-7,0.9319968,0.0003112027,0.06328615,0.0016920528],"study_design_scores_gemma":[0.005020573,0.00046964714,0.00028266973,0.000046897683,0.00006881694,0.0005063986,0.00005224565,0.0000014489436,0.5958539,0.000051599327,0.3972194,0.00042642],"about_ca_topic_score_codex":0.00018168417,"about_ca_topic_score_gemma":0.000019465944,"teacher_disagreement_score":0.33614293,"about_ca_system_score_codex":0.0001398857,"about_ca_system_score_gemma":0.00032116054,"threshold_uncertainty_score":0.9996993},"labels":[],"label_agreement":null},{"id":"W2063728600","doi":"10.1016/j.jaci.2009.02.019","title":"Toll-like receptor 4 variants reduce airway response in human subjects at high endotoxin levels in a swine facility","year":2009,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Genome Prairie; University of Saskatchewan; University of Alberta","funders":"","keywords":"TLR4; Medicine; Respiratory system; Vital capacity; Internal medicine; Immunology; Receptor; Physiology; Lung function; Lung","score_opus":0.027065534620945533,"score_gpt":0.30942719065438024,"score_spread":0.2823616560334347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2063728600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931362,0.0030110613,0.00001399416,0.0024653606,0.0010520825,0.00016942905,0.0000076039432,0.00001419645,0.00013004446],"genre_scores_gemma":[0.9961148,0.001750134,0.0000625929,0.00025725944,0.000049241058,0.0000035983735,0.000020462347,0.000008625507,0.0017332787],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9941365,0.0029333956,0.002039956,0.00033781925,0.00006659833,0.00048568964],"domain_scores_gemma":[0.997723,0.0010971208,0.0006871369,0.00033030525,0.00011798676,0.000044450688],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034852652,0.0002527395,0.0009091744,0.00042566858,0.00014364286,0.000013321921,0.00033778354,0.00085511775,0.00077858963],"category_scores_gemma":[0.0012715224,0.00021976432,0.00020275956,0.0002105657,0.00035461033,0.00023119833,0.00011779302,0.0012675362,0.000098681456],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.036957186,0.0007388907,0.0013921565,0.0000033605065,0.0004271941,0.00015958387,0.00044043068,0.0000090147305,0.9501463,0.00023943499,0.0003717188,0.009114692],"study_design_scores_gemma":[0.010228777,0.00511348,0.9031688,0.000115991985,0.000023141574,0.0005139997,0.00018772064,0.0000016496292,0.06729936,0.0004728681,0.012624294,0.00024993613],"about_ca_topic_score_codex":0.000054115153,"about_ca_topic_score_gemma":0.00013507427,"teacher_disagreement_score":0.9017766,"about_ca_system_score_codex":0.0001626578,"about_ca_system_score_gemma":0.00020322975,"threshold_uncertainty_score":0.8961729},"labels":[],"label_agreement":null},{"id":"W2064055642","doi":"10.1016/j.jaci.2007.04.038","title":"Cellular and humoral aberrations in a kindred with IL-1 receptor–associated kinase 4 deficiency","year":2007,"lang":"en","type":"letter","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Receptor; Immunology; Medicine; Biology; Internal medicine","score_opus":0.019298483745280127,"score_gpt":0.27238107669488393,"score_spread":0.2530825929496038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064055642","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9080075,0.018511187,0.000079401616,0.071077935,0.0016308808,0.00022347372,0.00001240237,0.00002013503,0.0004370638],"genre_scores_gemma":[0.7653047,0.061177325,0.0008265867,0.15383436,0.002252926,0.00003749817,0.0015143006,0.00027333995,0.014778964],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961347,0.0011769052,0.0017420473,0.00033522735,0.00008685635,0.00052427256],"domain_scores_gemma":[0.9971268,0.00095716666,0.0013596772,0.00024733628,0.0002798519,0.000029178005],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0014688264,0.00033918602,0.001041399,0.00052672735,0.00017469964,0.00002977977,0.00028122214,0.002560812,0.00022820721],"category_scores_gemma":[0.0005279895,0.00026865458,0.00019564912,0.00021157532,0.0009279348,0.00017846667,0.00009698291,0.0042575416,0.000037256294],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02148763,0.0035277153,0.008307816,0.00016270878,0.020272594,0.0063606887,0.0036742748,0.000016905167,0.15679888,0.0013171199,0.73669803,0.041375633],"study_design_scores_gemma":[0.009838077,0.006573754,0.037340388,0.0005631578,0.00036570214,0.0011763524,0.0005868239,0.0000037233528,0.0026182751,0.0003207732,0.93987215,0.0007408281],"about_ca_topic_score_codex":0.00006432211,"about_ca_topic_score_gemma":0.00016508404,"teacher_disagreement_score":0.20317411,"about_ca_system_score_codex":0.00007032431,"about_ca_system_score_gemma":0.0002825107,"threshold_uncertainty_score":0.9999766},"labels":[],"label_agreement":null},{"id":"W2064229941","doi":"10.1073/pnas.0308496101","title":"Toll-like receptor 3-mediated activation of NF-κB and IRF3 diverges at Toll-IL-1 receptor domain-containing adapter inducing IFN-β","year":2004,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":384,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health","keywords":"TRIF; IRF3; TLR3; Adapter (computing); Signal transducing adaptor protein; IκB kinase; Toll-like receptor; Receptor; Signal transduction; Cell biology; Chemistry; Molecular biology; NF-κB; Biology; Innate immune system; Biochemistry; Electrical engineering; Engineering","score_opus":0.023702561937991286,"score_gpt":0.25526327879012733,"score_spread":0.23156071685213606,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064229941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99613804,0.00024586503,0.000002045331,0.002527499,0.00007489435,0.00019278681,0.00001676706,0.000012866419,0.00078925857],"genre_scores_gemma":[0.99894315,0.00009030583,0.0005384475,0.00013873831,0.000027468104,0.000009345049,0.0000035462979,0.000004629998,0.0002443878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887866,0.000024350737,0.0004402364,0.0002257388,0.00025370068,0.00017732497],"domain_scores_gemma":[0.99885756,0.00021474007,0.0006605575,0.000012821381,0.00024048376,0.0000138666555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012197,0.00011793944,0.0002185133,0.00022794947,0.00032492384,0.000010989272,0.00034553604,0.00020983694,0.00007629704],"category_scores_gemma":[0.0005676383,0.000084710126,0.000061156235,0.00036631717,0.0007419403,0.0005974005,0.00017972513,0.00018861711,0.000008508454],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002521577,0.000025981635,0.0030229772,0.000031086653,0.000043216205,2.414296e-9,0.0014499859,0.000018779814,0.9879719,0.0063302857,0.00039507568,0.00045855946],"study_design_scores_gemma":[0.0006678797,0.00014128732,0.027718684,0.00020358767,0.000010074991,0.000007015288,0.0009639608,0.00000564975,0.9659158,0.0026146965,0.0016563411,0.0000950407],"about_ca_topic_score_codex":0.000025250476,"about_ca_topic_score_gemma":2.5007117e-7,"teacher_disagreement_score":0.024695707,"about_ca_system_score_codex":0.00008654986,"about_ca_system_score_gemma":0.00005613013,"threshold_uncertainty_score":0.34543785},"labels":[],"label_agreement":null},{"id":"W2064754526","doi":"10.1089/vim.2009.0054","title":"Disparate Regulation of LPS-Induced MAPK Signaling and IL-12p40 Expression Between Different Myeloid Cell Types with and without HIV Infection","year":2010,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; Children's Hospital of Eastern Ontario; University of Ottawa","funders":"Canadian Institutes of Health Research","keywords":"p38 mitogen-activated protein kinases; Transcription factor; Sp1 transcription factor; Biology; MAPK/ERK pathway; Molecular biology; Cell biology; Monocyte; Cell culture; Promoter; Signal transduction; Gene expression; Immunology; Gene; Biochemistry; Genetics","score_opus":0.007815279779781276,"score_gpt":0.21724685288516882,"score_spread":0.20943157310538754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064754526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985406,0.00045551025,0.00025455878,0.00008321649,0.00024086387,0.00022571812,0.0000060562775,0.00004603633,0.00014743509],"genre_scores_gemma":[0.9990531,0.00009892734,0.00009309298,0.00000833157,0.00003132108,0.000015843882,0.00010490171,0.000017217975,0.0005772396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989627,0.00022355882,0.00030745278,0.00024924308,0.00003142023,0.00022561358],"domain_scores_gemma":[0.99935764,0.00008984753,0.00025395336,0.0002173181,0.00006667935,0.000014536215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016016867,0.00019307144,0.0003337305,0.00017256592,0.00017662124,0.000015671376,0.000070493974,0.00037892556,0.00006594154],"category_scores_gemma":[0.000028232751,0.00014441492,0.000030700372,0.000067814784,0.00024805288,0.0002562172,0.00008284456,0.00037427194,0.000028475966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067083165,0.000034843324,0.03502145,0.00002498667,0.0000787352,2.501813e-7,0.00031537662,0.0000024225142,0.9599307,0.00020501662,0.000010179357,0.0037051903],"study_design_scores_gemma":[0.0011071014,0.00039679807,0.28439042,0.000036369995,0.00004928129,0.000018513812,0.000031826727,0.000008989325,0.71314245,0.00012098879,0.00057298987,0.00012424577],"about_ca_topic_score_codex":0.00008943446,"about_ca_topic_score_gemma":0.000015301894,"teacher_disagreement_score":0.24936898,"about_ca_system_score_codex":0.000012083437,"about_ca_system_score_gemma":0.000021704782,"threshold_uncertainty_score":0.588907},"labels":[],"label_agreement":null},{"id":"W2064757440","doi":"10.1016/s0145-305x(99)00086-5","title":"Purification of functional T lymphocytes from splenocytes of the beluga whales (Delphinapterus leucas)","year":2000,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institut National de la Recherche Scientifique","funders":"Bayer Fund; World Wildlife Fund; U.S. Environmental Protection Agency","keywords":"Leucas; Beluga Whale; Biology; Beluga; Splenocyte; Zoology; Fishery; Immunology; Immune system; Ecology","score_opus":0.030406014861207073,"score_gpt":0.23652467945781036,"score_spread":0.20611866459660327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064757440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99014807,0.0064291977,0.000053614265,0.00013179496,0.00045368617,0.00026717043,0.000045754354,0.000027005846,0.0024437013],"genre_scores_gemma":[0.99751836,0.0002776669,0.00025623202,0.000040379127,0.000013637999,0.00003762711,0.00036591545,0.000009586899,0.0014806144],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983719,0.00040046012,0.0006727958,0.00025416337,0.000069164715,0.00023148856],"domain_scores_gemma":[0.9989571,0.00028129143,0.00033863893,0.00027997507,0.00013456469,0.000008404371],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001543543,0.00021235127,0.00043247224,0.000111134075,0.00022056332,0.0000067702777,0.00036495706,0.00019881045,0.004363011],"category_scores_gemma":[0.000031601074,0.00016387882,0.000121099285,0.00021508902,0.00071528065,0.0001726806,0.000096258016,0.00018329639,0.0006343028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001311918,0.00015865348,0.0054335557,0.0000069787093,0.0005581016,5.217505e-7,0.0032851256,0.00003341044,0.97639644,0.0013010442,0.00047277013,0.0110414615],"study_design_scores_gemma":[0.00093682396,0.000070016504,0.3357356,0.000039393944,0.00002282417,0.000034827048,0.00090011884,0.0000058272662,0.6487897,0.00018700805,0.01316268,0.00011517432],"about_ca_topic_score_codex":0.0003630202,"about_ca_topic_score_gemma":0.000049529415,"teacher_disagreement_score":0.33030203,"about_ca_system_score_codex":0.00012153518,"about_ca_system_score_gemma":0.00023698225,"threshold_uncertainty_score":0.99654716},"labels":[],"label_agreement":null},{"id":"W2064841728","doi":"10.1016/j.micpath.2004.02.004","title":"Loss of lipopolysaccharide receptor CD14 from the surface of human macrophage-like cells mediated by Porphyromonas gingivalis outer membrane vesicles","year":2004,"lang":"en","type":"article","venue":"Microbial Pathogenesis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":117,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Porphyromonas gingivalis; Lipopolysaccharide; Bacterial outer membrane; Macrophage; Vesicle; CD14; Chemistry; Cell biology; Bacteroidaceae; Receptor; Microbiology; Bacteria; Membrane; Biology; In vitro; Biochemistry; Immunology; Escherichia coli; Gene","score_opus":0.008004924815243246,"score_gpt":0.20802223496509853,"score_spread":0.20001731014985527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064841728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943439,0.0027021416,0.000068231304,0.00041983646,0.00070328906,0.00030969075,0.0013785397,0.000049906015,0.000024459783],"genre_scores_gemma":[0.99762046,0.00028366185,0.00019929053,0.00018037052,0.00006665685,0.000006289363,0.00097031944,0.000045569326,0.0006273926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99795294,0.00044547816,0.00078116165,0.00035960696,0.00008494966,0.00037584198],"domain_scores_gemma":[0.99856395,0.00022909431,0.00047956628,0.00055367145,0.00014717568,0.000026546904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041961807,0.00029944623,0.0005329659,0.000072660754,0.00021306585,0.000016034708,0.0005261891,0.000354244,0.0007692765],"category_scores_gemma":[0.000047658727,0.00023938341,0.0002516312,0.00018987304,0.00041618207,0.00011367283,0.00013357872,0.00019662331,0.00033648752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034687194,0.00014055215,0.00026112533,0.000028210816,0.00028034902,0.0000068559075,0.0011388971,0.000047395355,0.99456525,0.00003219709,0.002671769,0.00048050267],"study_design_scores_gemma":[0.0015557723,0.0001242073,0.0009047491,0.00007503139,0.00012865664,0.000007632659,0.00017195565,3.891297e-7,0.992066,0.000027849761,0.00469595,0.00024177428],"about_ca_topic_score_codex":0.0037810095,"about_ca_topic_score_gemma":0.000068045425,"teacher_disagreement_score":0.0037129642,"about_ca_system_score_codex":0.00005371928,"about_ca_system_score_gemma":0.00008862311,"threshold_uncertainty_score":0.9761772},"labels":[],"label_agreement":null},{"id":"W2064883964","doi":"10.1002/ar.a.20401","title":"Pulmonary intravascular monocytes/macrophages in a rat model of sepsis","year":2006,"lang":"en","type":"article","venue":"The Anatomical Record Part A Discoveries in Molecular Cellular and Evolutionary Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Sepsis; Saline; Lipopolysaccharide; Monocyte; Inflammation; Tumor necrosis factor alpha; Macrophage; Lung; Escherichia coli; Immunology; Internal medicine; Medicine; Microbiology; Endocrinology; Chemistry; Pharmacology; Biology; In vitro; Biochemistry","score_opus":0.006732761589539367,"score_gpt":0.21418854261513315,"score_spread":0.20745578102559378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2064883964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9782815,0.017631903,0.0027779706,0.00034190994,0.00016908915,0.0002614667,0.0000207733,0.000015411784,0.0004999753],"genre_scores_gemma":[0.9982331,0.0009170339,0.00017710667,0.00006358755,0.000016429998,0.00004975409,0.00026560776,0.000014609081,0.0002627677],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981161,0.0005617727,0.0005663679,0.0003327728,0.000040452887,0.0003825372],"domain_scores_gemma":[0.99937713,0.0001427173,0.00011979395,0.0003162138,0.000029948522,0.000014186821],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035682486,0.00021344436,0.0004037952,0.00018848384,0.0000906392,0.000007804762,0.00023199625,0.00029689798,0.000068000474],"category_scores_gemma":[0.00006684141,0.00016603555,0.00013236991,0.00023083395,0.0007663771,0.00011253408,0.0001794348,0.00030126993,0.000016997981],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007011705,0.00013985994,0.008467639,0.00002280744,0.000047224206,0.000027136904,0.000089409856,0.0014214893,0.973742,0.013674242,0.0001573601,0.0015096251],"study_design_scores_gemma":[0.0022425195,0.00028421046,0.006380699,0.00010928969,0.00008780256,0.00010225138,0.0004414839,0.019029837,0.8807651,0.0794544,0.01044971,0.0006527406],"about_ca_topic_score_codex":0.0007001469,"about_ca_topic_score_gemma":0.00005642049,"teacher_disagreement_score":0.09297698,"about_ca_system_score_codex":0.000057861787,"about_ca_system_score_gemma":0.00007824639,"threshold_uncertainty_score":0.6770733},"labels":[],"label_agreement":null},{"id":"W2065193095","doi":"10.1016/s0165-2427(02)00246-5","title":"Biological activity of immunostimulatory CpG DNA motifs in domestic animals","year":2003,"lang":"en","type":"review","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":128,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; CpG site; Innate immune system; Toll-Like Receptor 9; Biology; TLR9; Immune system; Immunology; Acquired immune system; Toll-like receptor; Pattern recognition receptor; DNA; Genetics; Gene; DNA methylation; Gene expression","score_opus":0.05149425361393376,"score_gpt":0.32138569760165964,"score_spread":0.26989144398772585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065193095","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26408523,0.73346406,0.000017476339,0.000012282947,0.0012466682,0.00082468207,0.000052492614,0.00006845915,0.00022862387],"genre_scores_gemma":[0.10609611,0.89291275,0.000045416633,0.000021151754,0.000016621252,0.00033090074,0.00021127838,0.00008044674,0.0002853491],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98975897,0.005959674,0.0019913323,0.0011106309,0.000058477974,0.0011209147],"domain_scores_gemma":[0.9960067,0.0014239306,0.0012385397,0.0011995685,0.00009965434,0.000031598833],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015805488,0.0011330078,0.0044169417,0.0012762562,0.0002567165,0.000017923056,0.0007944592,0.0032938293,0.0004742485],"category_scores_gemma":[0.00048385814,0.0009874088,0.00059750804,0.00060376525,0.0020990216,0.00021265996,0.00067945744,0.0019602212,0.00039806936],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018460967,0.0006025855,0.00006801193,0.0028046626,0.0010194416,0.0007396727,0.00034168223,6.592956e-7,0.32150722,0.0011306308,0.000034761946,0.6699046],"study_design_scores_gemma":[0.0037846244,0.007573279,0.0074737975,0.0042087673,0.00069183146,0.03175041,0.00013748313,0.0000010036146,0.002856805,0.0003481029,0.93942326,0.001750617],"about_ca_topic_score_codex":0.000043404514,"about_ca_topic_score_gemma":0.0000011200605,"teacher_disagreement_score":0.9393885,"about_ca_system_score_codex":0.00017940784,"about_ca_system_score_gemma":0.00039137332,"threshold_uncertainty_score":0.9992576},"labels":[],"label_agreement":null},{"id":"W2065654550","doi":"10.1073/pnas.1221655110","title":"Lymphocyte-derived ACh regulates local innate but not adaptive immunity","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":227,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"National Institute of General Medical Sciences","keywords":"Biology; Innate immune system; Cell biology; Immune system; Acetylcholine; Acquired immune system; Population; Immunology; Lymphocyte; Endocrinology; Medicine","score_opus":0.028271524321374485,"score_gpt":0.2600445645381868,"score_spread":0.23177304021681233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065654550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99498457,0.0003896867,0.000003189025,0.0016739452,0.000036713584,0.00020815564,0.0000052975784,0.000016712627,0.0026817282],"genre_scores_gemma":[0.99878484,0.000048530048,0.00018445269,0.00019502801,0.000015327549,0.000018138418,6.075849e-7,0.0000036219935,0.0007494314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903286,0.000032502823,0.00036123084,0.00017041195,0.00021366614,0.00018936147],"domain_scores_gemma":[0.99891305,0.00017834721,0.00043081612,0.000011927039,0.00045560653,0.000010260141],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009890214,0.000106626554,0.00017639165,0.00015887915,0.0003269178,0.000016588869,0.00072554575,0.00018037285,0.000114803945],"category_scores_gemma":[0.00038216496,0.00006984513,0.00007917954,0.00039144407,0.0017954736,0.00063499104,0.00019967857,0.00020431657,0.000056704925],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000960513,0.000025608459,0.00015375145,0.0000124969465,0.000035958095,1.4477497e-9,0.00025628787,0.000025694653,0.9858962,0.010779294,0.00042336804,0.002295279],"study_design_scores_gemma":[0.00031810702,0.00006646194,0.07241946,0.0000505297,0.000008888023,0.000012976934,0.0006669416,0.00028722506,0.9174894,0.008404916,0.00019935872,0.000075714954],"about_ca_topic_score_codex":0.000095516756,"about_ca_topic_score_gemma":5.5241827e-8,"teacher_disagreement_score":0.07226571,"about_ca_system_score_codex":0.0000548992,"about_ca_system_score_gemma":0.00006117371,"threshold_uncertainty_score":0.66154975},"labels":[],"label_agreement":null},{"id":"W2065847351","doi":"10.1016/j.mvr.2012.03.003","title":"Activated protein C improves pial microcirculation in experimental endotoxemia in rats","year":2012,"lang":"en","type":"article","venue":"Microvascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Microcirculation; Intravital microscopy; Extravasation; Proinflammatory cytokine; Cytokine; Tumor necrosis factor alpha; Sepsis; Medicine; Monocyte; Inflammation; Internal medicine; Lipopolysaccharide; Endocrinology; Immunology; Pharmacology","score_opus":0.03817013615007474,"score_gpt":0.33229642233326423,"score_spread":0.2941262861831895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2065847351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990895,0.0074197105,0.000008337938,0.000088497385,0.00013325272,0.0011399528,2.5486412e-7,0.00002780783,0.00028720553],"genre_scores_gemma":[0.99878854,0.000027110267,0.000057287838,0.000012582871,0.00004663749,0.00025833378,0.000106297506,0.000024575816,0.00067866605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969547,0.0013620494,0.00037408844,0.00029415346,0.00011479183,0.0009002196],"domain_scores_gemma":[0.9994293,0.000090875816,0.000049503455,0.00033054643,0.000072544775,0.000027270129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025275287,0.00016305172,0.00024094632,0.0006618616,0.00015092456,0.000029912002,0.00022390812,0.0003265297,0.00026462518],"category_scores_gemma":[0.00016775166,0.0001598609,0.00009758311,0.0005527214,0.00016250515,0.0004109255,0.00015004582,0.00075792545,0.00068742665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045516898,0.00034031828,0.0017153543,0.000021401242,0.000042022395,0.000006165719,0.0019463688,0.000002150522,0.9923148,0.00013800798,0.00009461524,0.002923625],"study_design_scores_gemma":[0.001993021,0.00007657787,0.011028233,0.000060277995,0.0000023096536,0.000020208789,0.0005880038,0.0000037870016,0.97790897,0.000024163737,0.008130049,0.00016441003],"about_ca_topic_score_codex":0.0008070428,"about_ca_topic_score_gemma":0.00003596491,"teacher_disagreement_score":0.014405843,"about_ca_system_score_codex":0.00039299217,"about_ca_system_score_gemma":0.00011549793,"threshold_uncertainty_score":0.88357085},"labels":[],"label_agreement":null},{"id":"W2066106483","doi":"10.1016/j.vaccine.2004.01.059","title":"Intravaginal immunization with viral subunit protein plus CpG oligodeoxynucleotides induces protective immunity against HSV-2","year":2004,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre; Health Sciences Centre","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"CpG Oligodeoxynucleotide; Immunology; Immunization; Adjuvant; Virology; Antigen; Immune system; Immunity; Medicine; Biology; Herpes simplex virus; Virus","score_opus":0.007085786935764215,"score_gpt":0.2102429990542029,"score_spread":0.20315721211843868,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066106483","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99469876,0.00064502115,0.0019696231,0.00062121026,0.00011414633,0.0010862125,0.0000063313046,0.00018644708,0.0006722305],"genre_scores_gemma":[0.998574,0.000048858743,0.00022446917,0.000086237706,0.000042276944,0.00019985576,0.0002502394,0.000036391906,0.000537667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985715,0.0003217952,0.0003738999,0.00026908427,0.000063723055,0.0003999918],"domain_scores_gemma":[0.9990444,0.000035675996,0.00022736378,0.00043342402,0.00023603224,0.000023103265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033960008,0.00028696275,0.0003261172,0.00025635358,0.00045423114,0.00004392941,0.00029545277,0.0002466028,0.00019886157],"category_scores_gemma":[0.000116190495,0.00023002965,0.000044722252,0.00038848695,0.000067100096,0.0004791198,0.00009736738,0.0006154757,0.0003721217],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020719862,0.00014397074,0.00010478501,0.000029386892,0.00019202131,0.0000099239915,0.0012125788,0.00037178618,0.98758316,0.001966455,0.000030048473,0.006283917],"study_design_scores_gemma":[0.00479483,0.0011020335,0.017651964,0.00020738051,0.00004059831,0.000074468444,0.00057069276,0.000008236362,0.9723741,0.000577742,0.002253134,0.00034484832],"about_ca_topic_score_codex":0.0007184932,"about_ca_topic_score_gemma":0.000091173366,"teacher_disagreement_score":0.017547179,"about_ca_system_score_codex":0.00020126368,"about_ca_system_score_gemma":0.0002631261,"threshold_uncertainty_score":0.9380337},"labels":[],"label_agreement":null},{"id":"W2066129368","doi":"10.1016/s0003-9969(01)00038-3","title":"Tissue specificity of lymphocyte migration into sheep gingival tissue","year":2001,"lang":"en","type":"article","venue":"Archives of Oral Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of New Brunswick; University of Toronto","funders":"Medical Research Council","keywords":"Pathology; Lymphocyte; Lymph; Lymphatic system; Inflammation; Subcutaneous tissue; Antigen; Soft tissue; Necrosis; Medicine; Chemistry; Immunology","score_opus":0.011899483362719928,"score_gpt":0.26548063606681593,"score_spread":0.253581152704096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066129368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98957354,0.0023717452,0.0042791315,0.00040536784,0.00033453805,0.0001688757,0.000010479357,0.000029548337,0.0028267882],"genre_scores_gemma":[0.9967551,0.0008231432,0.0011045178,0.00002521259,0.00002643157,0.000006004071,0.00024111163,0.000008363162,0.0010100731],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987921,0.00031748202,0.0004344015,0.00019821455,0.000019074318,0.0002387224],"domain_scores_gemma":[0.99927855,0.00020643996,0.00021728128,0.00024730657,0.000037291633,0.000013164166],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015655805,0.0001350132,0.00034109704,0.00019750661,0.00006771968,0.000002451964,0.00021688899,0.0001635019,0.0003591938],"category_scores_gemma":[0.000087068016,0.00011740127,0.00007133556,0.00010997158,0.0004964345,0.00007004455,0.00008350579,0.0001013136,0.00014474196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00070150336,0.00005099947,0.002820173,0.000013365636,0.0000563538,0.0000016143191,0.0007014792,0.00000475259,0.7772375,0.0028938532,0.00008259354,0.21543585],"study_design_scores_gemma":[0.0006835529,0.00057378656,0.0112712495,0.000018108878,0.000017020857,0.00003512004,0.00008883273,0.000014906958,0.85182315,0.00222295,0.13314779,0.000103555096],"about_ca_topic_score_codex":0.00071985467,"about_ca_topic_score_gemma":0.000093522,"teacher_disagreement_score":0.21533228,"about_ca_system_score_codex":0.000012766963,"about_ca_system_score_gemma":0.000047956943,"threshold_uncertainty_score":0.4787485},"labels":[],"label_agreement":null},{"id":"W2066196230","doi":"10.1096/fj.02-0950fje","title":"Bacterial DNA evokes epithelial IL‐8 production by a MAPK‐dependent, NFκB‐independent pathway","year":2003,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"AstraZeneca Canada","keywords":"NF-κB; MAPK/ERK pathway; Cell biology; Chemistry; Signal transduction; Biology","score_opus":0.009176597643728652,"score_gpt":0.2083218565828317,"score_spread":0.19914525893910304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066196230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9910325,0.0011423234,0.00022904914,0.0006522178,0.005620666,0.0002452265,0.00003063087,0.000039508108,0.0010079034],"genre_scores_gemma":[0.9863261,0.00025748112,0.000018854857,0.00007493889,0.00037087398,0.0000131023135,0.00005304497,0.00002164357,0.012863945],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976373,0.001147734,0.0004535366,0.00021455248,0.00011231291,0.00043459344],"domain_scores_gemma":[0.9991625,0.00007466436,0.00030886085,0.0003115569,0.00010925673,0.00003314517],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0016027719,0.00020926296,0.00022058174,0.00010371337,0.00073897507,0.00009420049,0.00028822702,0.00020775945,0.0019456821],"category_scores_gemma":[0.00028485816,0.00013951377,0.0001437711,0.000093059345,0.00013628622,0.00028868928,0.000037427282,0.00066030625,0.0010290373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006269795,0.000085703934,0.00007445958,0.0000038276316,0.00014640826,0.000009383217,0.0005556633,0.00000640184,0.98846006,0.000306488,0.0057687955,0.0039558182],"study_design_scores_gemma":[0.0012567848,0.0001720853,0.00034197394,0.000021706484,0.000045437817,0.002174585,0.00044170558,5.5433554e-7,0.90558606,0.0003308616,0.08946353,0.00016468909],"about_ca_topic_score_codex":0.000016385038,"about_ca_topic_score_gemma":0.0000073473484,"teacher_disagreement_score":0.08369473,"about_ca_system_score_codex":0.00010129206,"about_ca_system_score_gemma":0.00017987282,"threshold_uncertainty_score":0.99974877},"labels":[],"label_agreement":null},{"id":"W2066285673","doi":"10.1016/j.clim.2005.01.014","title":"IL-17R activation of human airway smooth muscle cells induces CXCL-8 production via a transcriptional-dependent mechanism","year":2005,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research; Manitoba Health Research Council","keywords":"Chemokine; Neutrophilia; Cell biology; Interleukin 8; Messenger RNA; Biology; Molecular biology; Cytokine; Chemistry; Immunology; Inflammation; Gene","score_opus":0.033219773262233056,"score_gpt":0.3005905426335796,"score_spread":0.2673707693713465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066285673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99363977,0.0006477422,0.0010598277,0.0016261559,0.0020636937,0.00044411328,0.000008986748,0.00011008723,0.00039964035],"genre_scores_gemma":[0.9964246,0.00036750647,0.00014561898,0.0001566521,0.00020817881,0.000050708786,0.0001646484,0.000027194632,0.0024548636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968432,0.0008665577,0.0013189912,0.00050357764,0.00007855401,0.00038909106],"domain_scores_gemma":[0.9984047,0.00026057076,0.0005623115,0.00051798875,0.00023272824,0.000021689486],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011261331,0.00024792456,0.0005401546,0.000240515,0.0002548978,0.00000927139,0.0003348409,0.00083755766,0.00093167863],"category_scores_gemma":[0.00023721578,0.00023511385,0.00025315434,0.0001693304,0.00047923162,0.0003649359,0.000077596414,0.0007344988,0.00073366176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004637827,0.00063265156,0.000026575988,0.000012013313,0.0002570902,6.6435547e-7,0.00040474028,0.000011826878,0.9402572,0.002931214,0.00026660346,0.054735657],"study_design_scores_gemma":[0.0017513047,0.0008738216,0.013475914,0.000041205112,0.00008182023,0.000010734576,0.00020746609,0.0000063251164,0.9634516,0.0011923746,0.018674025,0.00023337765],"about_ca_topic_score_codex":0.0000677457,"about_ca_topic_score_gemma":0.000017909077,"teacher_disagreement_score":0.05450228,"about_ca_system_score_codex":0.00007855032,"about_ca_system_score_gemma":0.0000949083,"threshold_uncertainty_score":0.9999816},"labels":[],"label_agreement":null},{"id":"W2066381235","doi":"10.1002/ibd.21097","title":"TLR5 is not required for flagellin-mediated exacerbation of DSS colitis","year":2009,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"TLR5; Flagellin; Colitis; Inflammatory bowel disease; Immunology; Ulcerative colitis; Antigen; Exacerbation; Microbiology; Medicine; Innate immune system; Immune system; Biology; Toll-like receptor; Receptor; Internal medicine; Disease","score_opus":0.012128644558676384,"score_gpt":0.2427880459018306,"score_spread":0.2306594013431542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066381235","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954425,0.0016648849,0.00031852906,0.00054671697,0.00040788518,0.00074537745,0.00031802917,0.00015363311,0.00040242224],"genre_scores_gemma":[0.99683,0.00018065829,0.000040514013,0.00047090644,0.000074075906,0.000074872725,0.00070254516,0.000020090454,0.0016063567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99848557,0.00017148013,0.0006332179,0.00027680426,0.000077342534,0.0003555804],"domain_scores_gemma":[0.9987041,0.00030965309,0.00033270445,0.00038120456,0.0002280468,0.000044290286],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021735836,0.00021632171,0.00031147327,0.00018433522,0.00017274021,0.000018949248,0.00020904797,0.00025588088,0.00039425577],"category_scores_gemma":[0.0003656503,0.00021596567,0.00021788556,0.00010174459,0.00015672842,0.00030600597,0.000023643965,0.000093043884,0.00030277795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006834893,0.0002825235,0.0032570218,0.00022350639,0.00024858853,0.000014613396,0.0010213321,0.00003481783,0.94747627,0.0035236394,0.021817852,0.015264941],"study_design_scores_gemma":[0.0032894132,0.00040469994,0.34455317,0.00013194267,0.00015303068,0.000007375639,0.00017444316,0.00010210092,0.59516984,0.0011148808,0.054520797,0.00037827893],"about_ca_topic_score_codex":0.000008101264,"about_ca_topic_score_gemma":0.0000021634924,"teacher_disagreement_score":0.3523064,"about_ca_system_score_codex":0.000051246298,"about_ca_system_score_gemma":0.00017054603,"threshold_uncertainty_score":0.8806824},"labels":[],"label_agreement":null},{"id":"W2066445793","doi":"10.1164/rccm.201001-0075oc","title":"Role for Myeloid Nuclear Differentiation Antigen in the Regulation of Neutrophil Apoptosis during Sepsis","year":2010,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Research in Immunology and Cancer; Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Sepsis; Myeloid cells; Immunology; Myeloid; Apoptosis; Cell biology; Cancer research; Genetics; Biology","score_opus":0.007737648231676089,"score_gpt":0.25705074113848936,"score_spread":0.24931309290681328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066445793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972937,0.0011087859,0.000047412137,0.0012408377,0.00016570599,0.00008625702,0.0000021794679,0.000003113738,0.00005201423],"genre_scores_gemma":[0.9995909,0.000045179328,0.00004179391,0.00019852299,0.00010808864,0.000002885309,0.0000038177823,0.000006313806,0.0000025455283],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99913085,0.00022550346,0.0003850007,0.00007740221,0.00006175425,0.00011951126],"domain_scores_gemma":[0.99912304,0.00033573626,0.00019737425,0.00010570015,0.0002204556,0.000017687136],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042417366,0.0000757246,0.00025554228,0.00014995139,0.00010027817,0.0000053370763,0.00010330936,0.00006306414,0.00004880214],"category_scores_gemma":[0.00046876387,0.00004878824,0.000056899917,0.00011305906,0.00051485247,0.000096083844,0.000011567493,0.000251044,7.540285e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005426565,0.000021872682,0.0031424775,0.000036547583,0.000019026686,5.2219895e-7,0.0026720995,8.392062e-7,0.96947557,0.0009810076,0.000024359226,0.023083046],"study_design_scores_gemma":[0.0022965919,0.0038943007,0.7082283,0.00017304579,0.00014870998,0.000072112445,0.024018746,0.0000061513515,0.25471935,0.00042452407,0.00588685,0.00013131907],"about_ca_topic_score_codex":0.000012698021,"about_ca_topic_score_gemma":0.000004033005,"teacher_disagreement_score":0.7147562,"about_ca_system_score_codex":0.000009735872,"about_ca_system_score_gemma":0.000022584922,"threshold_uncertainty_score":0.19895266},"labels":[],"label_agreement":null},{"id":"W2066542834","doi":"10.1016/j.vaccine.2008.03.024","title":"Innate inflammatory responses to the Gram-positive bacterium Lactococcus lactis","year":2008,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"U.S. Food and Drug Administration","keywords":"Lactococcus lactis; Microbiology; Proinflammatory cytokine; Bacteria; Biology; Chemokine; Pathogenic bacteria; Escherichia coli; Salmonella; Immunology; Inflammation; Lactic acid; Gene","score_opus":0.011134701541219441,"score_gpt":0.23047589407113575,"score_spread":0.2193411925299163,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066542834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99220663,0.00068132236,0.00006956415,0.005012923,0.00058478635,0.00049914944,0.000017448216,0.00010768147,0.0008205168],"genre_scores_gemma":[0.9872787,0.0001357343,0.000019965353,0.00082192064,0.000087783206,0.00007984948,0.00006588684,0.000020058835,0.011490111],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986536,0.0004394183,0.00031020163,0.00021710701,0.00004105853,0.00033864746],"domain_scores_gemma":[0.9990513,0.00027352097,0.00010570632,0.0004211341,0.0001227118,0.000025630063],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033981615,0.00018334415,0.00021424123,0.0001755165,0.00042368914,0.000015672776,0.00025944493,0.0001593263,0.00054252945],"category_scores_gemma":[0.0002517913,0.00012562195,0.00007944453,0.00024120671,0.000030164594,0.00016664319,0.00011541378,0.0002772791,0.003726163],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004259047,0.00005879527,0.0074875336,0.000007784005,0.00016792571,0.000051985873,0.0026247252,0.000006445127,0.9436,0.00031495845,0.036715128,0.004705664],"study_design_scores_gemma":[0.0007792248,0.00019569753,0.36963153,0.00001758764,0.00001611233,0.00021390327,0.00008869271,0.0000011491994,0.30775067,0.000012625635,0.32114664,0.00014616246],"about_ca_topic_score_codex":0.00006670526,"about_ca_topic_score_gemma":0.00003052031,"teacher_disagreement_score":0.63584936,"about_ca_system_score_codex":0.000047772235,"about_ca_system_score_gemma":0.000088428824,"threshold_uncertainty_score":0.99704957},"labels":[],"label_agreement":null},{"id":"W2066719210","doi":"10.1038/ni.2023","title":"An unexpected role for MHC class II","year":2011,"lang":"en","type":"letter","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Major histocompatibility complex; Cell biology; MHC class II; MHC class I; CD74; Biology; Signal transduction; Function (biology); Antigen presentation; CD8; Intracellular; Antigen processing; Immunology; Antigen; T cell; Immune system","score_opus":0.006534628546297705,"score_gpt":0.23539465273219143,"score_spread":0.2288600241858937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066719210","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13194282,0.20323531,0.00034621652,0.5979281,0.0389424,0.006058958,0.0009535916,0.0025166317,0.018075936],"genre_scores_gemma":[0.14744103,0.0012035213,0.0006750665,0.68326914,0.005885787,0.0016464072,0.059023906,0.0006882976,0.100166835],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965404,0.00074773683,0.0006964164,0.0008604425,0.00005935587,0.0010956486],"domain_scores_gemma":[0.99734753,0.00033233012,0.0005407898,0.0013492627,0.00041486454,0.000015194393],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0003042395,0.00068764493,0.00096149975,0.00061102223,0.00059276604,0.000026180196,0.0012010462,0.0146012185,0.0012880889],"category_scores_gemma":[0.00023653086,0.0006326765,0.00039538293,0.0002020105,0.00040584352,0.00022446219,0.00018657636,0.0076495316,0.0008256661],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00086248765,0.00007895271,0.0000041367844,0.000027404658,0.00078132853,0.00002029132,0.00041039582,1.4502409e-7,0.4274292,0.0009003646,0.5659245,0.0035607289],"study_design_scores_gemma":[0.001522049,0.0011818835,0.00019132132,0.000039804097,0.00017213135,0.00019844576,0.00008064623,0.0000017695685,0.15313499,0.0010403326,0.84186125,0.0005753878],"about_ca_topic_score_codex":0.00007571936,"about_ca_topic_score_gemma":0.000015393496,"teacher_disagreement_score":0.2759367,"about_ca_system_score_codex":0.00013529944,"about_ca_system_score_gemma":0.00026474328,"threshold_uncertainty_score":0.9999523},"labels":[],"label_agreement":null},{"id":"W2066730813","doi":"10.1074/jbc.m111.237578","title":"Neu1 Sialidase and Matrix Metalloproteinase-9 Cross-talk Is Essential for Toll-like Receptor Activation and Cellular Signaling","year":2011,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Vlaamse regering; Universiteit Gent; Natural Sciences and Engineering Research Council of Canada; Queen's University","keywords":"Cell biology; Signal transduction; TLR4; Toll-like receptor; Chemistry; Receptor; Biology; Biochemistry; Innate immune system","score_opus":0.023344930342634566,"score_gpt":0.2586773203100009,"score_spread":0.23533238996736633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066730813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969964,0.0016187456,0.0009547093,0.00009908057,0.00012761161,0.00012229927,0.000008982368,0.000010781197,0.00006136198],"genre_scores_gemma":[0.9986082,0.00011843556,0.0006329745,0.00004660272,0.000103823,0.000006670706,0.00003101549,0.000006908358,0.00044539312],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915415,0.00006588086,0.00041985282,0.0001562989,0.000031274267,0.0001725201],"domain_scores_gemma":[0.99925923,0.0001154183,0.0003815332,0.00008052239,0.00013120337,0.000032061864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004222778,0.00013605067,0.00026665037,0.000031516203,0.00013396835,0.000028616221,0.00010077008,0.00035989724,0.00077886635],"category_scores_gemma":[0.00018853987,0.00009753609,0.00011560985,0.000038071812,0.00018213209,0.00014483584,0.000044318604,0.00021741416,0.0000044295502],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016016077,0.000053752174,0.00022412039,0.000048701968,0.00010665442,0.000004467282,0.00014417004,2.9832515e-7,0.99679303,0.000019531146,0.00010770326,0.0008959712],"study_design_scores_gemma":[0.0011460388,0.00027892998,0.00031577732,0.00003497875,0.000039106704,0.00012148231,0.0001444202,0.0000025375355,0.9921221,0.00025888573,0.005414618,0.00012113175],"about_ca_topic_score_codex":0.000004342969,"about_ca_topic_score_gemma":2.7357034e-8,"teacher_disagreement_score":0.005306915,"about_ca_system_score_codex":0.000016448808,"about_ca_system_score_gemma":0.000029286384,"threshold_uncertainty_score":0.852804},"labels":[],"label_agreement":null},{"id":"W2066892212","doi":"10.1159/000049504","title":"A Th1-Inducing Adjuvant, MPL&lt;sup&gt;®&lt;/sup&gt;, Enhances Antibody Profiles in Experimental Animals Suggesting It Has the Potential to Improve the Efficacy of Allergy Vaccines","year":2001,"lang":"en","type":"article","venue":"International Archives of Allergy and Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Adjuvant; Antigen; Immunology; Keyhole limpet hemocyanin; Antibody; Immunoglobulin E; Medicine","score_opus":0.009794015085430922,"score_gpt":0.26072612690590524,"score_spread":0.2509321118204743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2066892212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861284,0.007746656,0.00029089494,0.0033685893,0.00053562626,0.00038049146,0.000014942856,0.000022171327,0.001512226],"genre_scores_gemma":[0.99686784,0.0019884475,0.00013160419,0.000096012234,0.000098636345,0.000055568584,0.000092510745,0.00001849917,0.00065086567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99791276,0.00043453337,0.00078682206,0.00038268283,0.0000929313,0.0003902387],"domain_scores_gemma":[0.99836504,0.0008312524,0.0003833012,0.0003075072,0.00009621425,0.000016661088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003070756,0.00026907737,0.00040896152,0.00031962336,0.00028267354,0.000030924675,0.0007411538,0.00015529142,0.00029045812],"category_scores_gemma":[0.00029718966,0.00018365799,0.0001464582,0.00013801582,0.0006047026,0.00016895426,0.00045536368,0.0003026918,0.000023578155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036659553,0.00022734006,0.00021601724,0.0000064300266,0.0010276492,0.000008372887,0.006041186,0.00032005584,0.97244346,0.0028655375,0.00007790202,0.013100103],"study_design_scores_gemma":[0.003189081,0.0011254254,0.13532801,0.0002485139,0.000020656782,0.0002672412,0.0036389334,0.0007478463,0.8271451,0.0005220372,0.027452212,0.00031495068],"about_ca_topic_score_codex":0.00044510857,"about_ca_topic_score_gemma":0.0001606025,"teacher_disagreement_score":0.14529836,"about_ca_system_score_codex":0.000017129336,"about_ca_system_score_gemma":0.000085791005,"threshold_uncertainty_score":0.7489356},"labels":[],"label_agreement":null},{"id":"W2067150920","doi":"10.1038/sj.bjp.0704715","title":"IL‐1β signalling in glial cells in wildtype and IL‐1RI deficient mice","year":2002,"lang":"en","type":"article","venue":"British Journal of Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"","keywords":"p38 mitogen-activated protein kinases; Cell biology; Signal transduction; MAPK/ERK pathway; Receptor; Biology; Kinase; Inflammation; Microglia; Neuroglia; Neurodegeneration; Mitogen-activated protein kinase; Neuroscience; Internal medicine; Immunology; Central nervous system; Biochemistry; Medicine","score_opus":0.0114969110726102,"score_gpt":0.2378585962818837,"score_spread":0.2263616852092735,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067150920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9755313,0.022622619,0.000027360038,0.00034504983,0.0011407457,0.00012268449,0.000006736894,0.00000613264,0.00019739354],"genre_scores_gemma":[0.9910738,0.008293164,0.00005767867,0.00027201662,0.00008338862,0.0000032988728,0.000003016022,0.000009977005,0.00020366184],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984118,0.00047292176,0.0006127681,0.00014145482,0.000038943108,0.00032211436],"domain_scores_gemma":[0.9994386,0.00019099422,0.00024310489,0.000028779694,0.00007692753,0.000021607013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006684697,0.00010691648,0.0003113723,0.0002927085,0.00006946767,0.000018430785,0.00015300412,0.00019308455,0.0008289372],"category_scores_gemma":[0.000051544816,0.00012657249,0.00005906629,0.00015543982,0.000115906114,0.00017613392,0.0000432805,0.00062067644,0.00007658158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003761245,0.00020638687,0.00021661911,0.000013878109,0.00004546267,0.000677429,0.00052151014,0.00018953494,0.9718151,0.000012151723,0.004073443,0.021852367],"study_design_scores_gemma":[0.009814417,0.0006499997,0.0049798903,0.00024528566,0.000084912754,0.008158934,0.00037350116,0.00029346495,0.9134487,0.00006669273,0.061571512,0.0003126763],"about_ca_topic_score_codex":0.000093806724,"about_ca_topic_score_gemma":0.00005407475,"teacher_disagreement_score":0.05836638,"about_ca_system_score_codex":0.00006744191,"about_ca_system_score_gemma":0.00004143343,"threshold_uncertainty_score":0.9076281},"labels":[],"label_agreement":null},{"id":"W2067193667","doi":"10.4049/jimmunol.169.12.7026","title":"Hydrogen Peroxide Induces Murine Macrophage Chemokine Gene Transcription Via Extracellular Signal-Regulated Kinase- and Cyclic Adenosine 5′-Monophosphate (cAMP)-Dependent Pathways: Involvement of NF-κB, Activator Protein 1, and cAMP Response Element Binding Protein","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"CREB; Chemokine; Cell biology; Protein kinase A; MAPK/ERK pathway; Molecular biology; Chemistry; Signal transduction; Biology; Transcription factor; Kinase; Biochemistry; Receptor","score_opus":0.014161804846918152,"score_gpt":0.1989751075511568,"score_spread":0.18481330270423865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067193667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95277697,0.045118522,0.00019851775,0.0007310093,0.00012230681,0.0010126205,0.000013622312,0.000022355707,0.0000040599316],"genre_scores_gemma":[0.9970653,0.0019801727,0.00012410982,0.000021106309,0.000029261724,0.00004032537,0.00001913775,0.0000370186,0.0006835866],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963631,0.00151061,0.0012446203,0.0002579231,0.00014976377,0.00047400154],"domain_scores_gemma":[0.9980953,0.0001456631,0.001181179,0.00034813333,0.00018527803,0.00004448216],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0021522264,0.00036604112,0.0006444535,0.00040083626,0.00028992776,0.000021166987,0.00034256792,0.0003580089,0.00044771796],"category_scores_gemma":[0.00008997001,0.0002713236,0.0001182639,0.00021812021,0.0004221765,0.00029776504,0.0001301544,0.00065991096,0.000024117013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009643016,0.0003425178,0.000024757304,0.00005996873,0.0007803224,0.000042175085,0.0024328833,0.000015052639,0.98008657,0.000029251627,0.000009867074,0.006533608],"study_design_scores_gemma":[0.004556952,0.0023170637,0.0010885274,0.0002290229,0.00016939892,0.0007181648,0.0007676509,0.000028160683,0.98917764,0.00009157157,0.00061014027,0.00024571086],"about_ca_topic_score_codex":0.00006477187,"about_ca_topic_score_gemma":0.0000028814022,"teacher_disagreement_score":0.044288293,"about_ca_system_score_codex":0.00015090783,"about_ca_system_score_gemma":0.000060828996,"threshold_uncertainty_score":0.9999739},"labels":[],"label_agreement":null},{"id":"W2067372178","doi":"10.1007/s00005-008-0008-3","title":"Neutrophil recognition of bacterial DNA and Toll-like receptor 9-dependent and -independent regulation of neutrophil function","year":2008,"lang":"en","type":"review","venue":"Archivum Immunologiae et Therapiae Experimentalis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Cell biology; TLR9; Pattern recognition receptor; Biology; TLR3; Innate immune system; Toll-Like Receptor 9; Chemokine; TLR4; Signal transduction; Toll-like receptor; Chemotaxis; Receptor; Gene expression; Gene; Biochemistry","score_opus":0.027024249787250675,"score_gpt":0.26943977465306074,"score_spread":0.24241552486581006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067372178","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.116429076,0.8806554,0.000019444105,0.000029515691,0.0013679761,0.0010581488,0.00018512672,0.000064812295,0.00019051175],"genre_scores_gemma":[0.028217053,0.9678335,0.00008058565,0.000022785318,0.00006504804,0.0001794384,0.0032724158,0.000073088835,0.00025606947],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.995823,0.001676175,0.0013518357,0.0006434527,0.0001290252,0.0003765002],"domain_scores_gemma":[0.997685,0.0003425916,0.0012976321,0.00055832806,0.000086583146,0.000029835104],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003773931,0.00064001844,0.0016276494,0.0005507561,0.00021603613,0.000026976024,0.00027456105,0.00075153477,0.0005485705],"category_scores_gemma":[0.000038587925,0.000552328,0.00038005624,0.00016985605,0.00066306593,0.0003193138,0.0002848639,0.00053798704,0.000052937816],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013641188,0.00018681778,0.0000023243972,0.0005154086,0.00089700264,0.000001646491,0.0010704452,1.6025204e-7,0.56848973,0.00015732061,0.00016972808,0.4271453],"study_design_scores_gemma":[0.0062179044,0.004635481,0.00095605815,0.0049734195,0.0008720523,0.0011386898,0.0010941908,9.122629e-7,0.38009304,0.00034547498,0.59813803,0.0015347208],"about_ca_topic_score_codex":0.00013079525,"about_ca_topic_score_gemma":0.000003672466,"teacher_disagreement_score":0.59796834,"about_ca_system_score_codex":0.00010393957,"about_ca_system_score_gemma":0.00015982924,"threshold_uncertainty_score":0.9996928},"labels":[],"label_agreement":null},{"id":"W2067576016","doi":"10.2174/138955708784534481","title":"Activation and Regulation of Toll-like Receptor 9: CpGs and Beyond","year":2008,"lang":"en","type":"review","venue":"Mini-Reviews in Medicinal Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Nucleic acid; TLR9; Toll-Like Receptor 9; Biology; Innate immune system; CpG site; DNA; Receptor; Biochemistry; DNA methylation; Cell biology; Computational biology; Gene; Gene expression","score_opus":0.023880568033202678,"score_gpt":0.29130557303020865,"score_spread":0.267425004997006,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067576016","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021388803,0.99617785,0.000008532697,0.00004406981,0.00016621222,0.00054420036,0.000008242999,0.000010866701,0.0009011517],"genre_scores_gemma":[0.00010847354,0.9970084,0.000094148694,0.00002786796,0.00007287985,0.00007991633,0.00055486144,0.000019971965,0.00203348],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99792945,0.00030615018,0.0011413908,0.00035844787,0.000063380314,0.00020116295],"domain_scores_gemma":[0.99860215,0.00027613898,0.0007583365,0.00030909467,0.000030140718,0.000024109471],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00060027005,0.0003493424,0.0016751185,0.00012358304,0.000063587555,0.000004526952,0.00014154184,0.0006893079,0.0003070958],"category_scores_gemma":[0.00035792374,0.00027768346,0.00013598953,0.00019294972,0.0002990807,0.000087141976,0.00006592799,0.000491766,0.000026349257],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000046484358,0.000027223568,0.000006591625,0.011816155,0.0000564029,0.0000014358042,0.00020747159,1.3942207e-8,0.02503477,0.0000050916055,0.0040829675,0.9587154],"study_design_scores_gemma":[0.00045096618,0.000045774053,0.000031980973,0.014393841,0.00015169416,0.00029310072,0.000048716574,3.2911566e-7,0.009391744,0.0000063500806,0.9749688,0.000216695],"about_ca_topic_score_codex":0.000008397476,"about_ca_topic_score_gemma":6.541378e-7,"teacher_disagreement_score":0.9708858,"about_ca_system_score_codex":0.00006439944,"about_ca_system_score_gemma":0.00014356076,"threshold_uncertainty_score":0.9999675},"labels":[],"label_agreement":null},{"id":"W2067634022","doi":"10.1186/1471-2466-9-46","title":"Association of the TLR4 Asp299Gly polymorphism with lung function in relation to body mass index","year":2009,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Saskatchewan; Canadian Institute for Public Safety Research and Treatment; University of Ottawa; Saskatchewan Health Authority; Canadian Science Centre for Human and Animal Health","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Medicine; Body mass index; Lung function; Lung; Internal medicine","score_opus":0.0059389611743364415,"score_gpt":0.2148319723644659,"score_spread":0.20889301119012946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067634022","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861863,0.001248973,0.0019461771,0.006108607,0.00053796265,0.0004996874,0.0000015901209,0.00003295746,0.0034377237],"genre_scores_gemma":[0.9937369,0.000022366787,0.000018582907,0.00028913037,0.0000635149,0.000011669926,0.000048649505,0.0000070786864,0.005802069],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988874,0.00028861238,0.00037297164,0.00015745661,0.00010445812,0.00018907094],"domain_scores_gemma":[0.99929845,0.00012910053,0.00026107207,0.00022409088,0.000074845055,0.000012448861],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006439021,0.00011454775,0.00021233017,0.000212735,0.00007741991,0.0000022130564,0.00011183291,0.00019473991,0.00013514546],"category_scores_gemma":[0.00022633937,0.00007339393,0.000034856123,0.00042157588,0.000038996306,0.00013243472,0.000014173957,0.0002255257,0.00003192421],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024117895,0.00006664057,0.28297153,0.000014939153,0.00004207444,0.0000026458579,0.00029128187,0.00018997389,0.7086751,0.00038548574,0.0016952605,0.0032533184],"study_design_scores_gemma":[0.0012407933,0.00043383046,0.9868181,0.00022748469,0.000056538378,0.00001919686,0.00013932465,0.00017386086,0.0081768995,0.00023330885,0.0023947076,0.00008599912],"about_ca_topic_score_codex":0.00012701817,"about_ca_topic_score_gemma":0.000033193384,"teacher_disagreement_score":0.7038465,"about_ca_system_score_codex":0.00015341553,"about_ca_system_score_gemma":0.00006296841,"threshold_uncertainty_score":0.29929176},"labels":[],"label_agreement":null},{"id":"W2067834379","doi":"10.1165/rcmb.2003-0312oc","title":"Monocyte Recruitment into the Lungs in Pneumococcal Pneumonia","year":2003,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Pneumonia; Monocyte; Lung; Bone marrow; Immunology; Pathology; Medicine; Biology; Internal medicine","score_opus":0.011665704327346564,"score_gpt":0.2675568128356372,"score_spread":0.25589110850829067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2067834379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854999,0.012899704,0.00043242064,0.00037133778,0.00021394654,0.0001633902,4.3420533e-7,0.000004541044,0.0004143279],"genre_scores_gemma":[0.9984065,0.000543836,0.00012214534,0.00083491486,0.000011947448,0.000013295597,0.0000016019851,0.000010113871,0.000055622102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977751,0.001327948,0.00046178306,0.00015640013,0.000027880746,0.0002509162],"domain_scores_gemma":[0.99921197,0.0001346611,0.0003802129,0.00017781385,0.000065533226,0.00002980951],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085759116,0.00014709192,0.00032414624,0.00018494132,0.00008732658,0.000009368871,0.00017744515,0.00010438968,0.000022916654],"category_scores_gemma":[0.00009497507,0.00009685511,0.000095968404,0.0001725092,0.0004982527,0.000044567376,0.00003751492,0.00036059154,0.000016454018],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019649355,0.00003782783,0.002226175,0.0000033098395,0.000052331736,0.000028925975,0.00055986433,0.000006208077,0.96094674,0.0007560277,0.000027677772,0.03515839],"study_design_scores_gemma":[0.0010729523,0.0018766752,0.003944385,0.000016785425,0.000032430817,0.0001750005,0.00091093953,6.9560673e-7,0.6462981,0.00042879538,0.3450951,0.00014814519],"about_ca_topic_score_codex":0.000032855958,"about_ca_topic_score_gemma":0.000005710459,"teacher_disagreement_score":0.3450674,"about_ca_system_score_codex":0.000040407318,"about_ca_system_score_gemma":0.00013382091,"threshold_uncertainty_score":0.39496368},"labels":[],"label_agreement":null},{"id":"W2068156832","doi":"10.2353/ajpath.2006.051155","title":"Severe Sepsis Exacerbates Cell-Mediated Immunity in the Lung Due to an Altered Dendritic Cell Cytokine Profile","year":2006,"lang":"en","type":"article","venue":"American Journal Of Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Immune system; Immunology; Schistosoma mansoni; Cytokine; Biology; Lung; Sepsis; Granuloma; Dendritic cell; Immunity; Cellular immunity; Medicine; Internal medicine; Schistosomiasis","score_opus":0.005678857761243786,"score_gpt":0.23060861311477587,"score_spread":0.2249297553535321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068156832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968397,0.0009842092,0.00030068008,0.00087657425,0.0002665133,0.00020061572,0.000018484685,0.000014114922,0.0004990878],"genre_scores_gemma":[0.9984719,0.00005021959,0.0004203028,0.00068841403,0.00007821262,0.000014887323,0.00008767979,0.00001768349,0.00017065744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99666756,0.002050484,0.00065336237,0.00016366795,0.000060235358,0.00040468253],"domain_scores_gemma":[0.99857545,0.0004392655,0.00050138874,0.00030975306,0.00014701836,0.000027097705],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096054253,0.00018352522,0.0004766381,0.00033129755,0.00013003108,0.000017659388,0.00045408044,0.00012320976,0.00017637353],"category_scores_gemma":[0.0001039807,0.00013493827,0.00010049629,0.00040023355,0.0003188315,0.00016088315,0.000052453033,0.00058469235,0.00012507498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00063650624,0.0003708089,0.00384441,0.000012752499,0.000025023544,0.00051456015,0.0030626464,0.00010905028,0.9848478,0.000025229008,0.003965281,0.0025859415],"study_design_scores_gemma":[0.006422779,0.008947536,0.3601442,0.00012130731,0.00023773436,0.017625503,0.022029882,0.00006993546,0.571113,0.0003210024,0.012031166,0.0009359786],"about_ca_topic_score_codex":0.00024357636,"about_ca_topic_score_gemma":0.00003272691,"teacher_disagreement_score":0.41373482,"about_ca_system_score_codex":0.0000621748,"about_ca_system_score_gemma":0.00008762204,"threshold_uncertainty_score":0.5502623},"labels":[],"label_agreement":null},{"id":"W2068428724","doi":"10.1046/j.1365-2982.2001.00294.x","title":"The tripeptide feG reduces endotoxin‐provoked perturbation of intestinal motility and inflammation","year":2001,"lang":"en","type":"article","venue":"Neurogastroenterology & Motility","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council; Research Services, University of Calgary; University of Calgary","keywords":"Lipopolysaccharide; Extravasation; Inflammation; Chemistry; Motility; Tripeptide; Endocrinology; Internal medicine; Intestinal motility; CD18; Integrin alpha M; Peptide; Medicine; Immunology; Biology; Biochemistry; Cell biology; Receptor","score_opus":0.0094444285322222,"score_gpt":0.22220109072840888,"score_spread":0.2127566621961867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068428724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968174,0.0003114187,0.00019425062,0.0016214926,0.00036432585,0.00041450185,0.0000057094144,0.00006411466,0.00020675475],"genre_scores_gemma":[0.99923617,0.000109891,0.0000386773,0.00007418466,0.0000333321,0.000034812234,0.00004213061,0.000009648563,0.00042115324],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99754274,0.0010096389,0.0006409477,0.00035833946,0.000062318555,0.00038599994],"domain_scores_gemma":[0.99860156,0.0004387123,0.00035528743,0.00040310033,0.00017504516,0.0000263084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008480845,0.0002016455,0.0002914292,0.00009333944,0.00032518664,0.000019794852,0.0002376755,0.00015825809,0.000060450377],"category_scores_gemma":[0.00090501516,0.00015533864,0.00008398311,0.000107673564,0.00071051484,0.00016701447,0.00011499281,0.0003664893,0.000023692408],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008457181,0.00009503746,0.19734211,0.000017969145,0.0000709638,0.000003677,0.00030810555,0.000009235126,0.7695665,0.00009624243,0.00013852851,0.031505935],"study_design_scores_gemma":[0.0012020745,0.0007046068,0.79859304,0.000012302394,0.000039318264,0.00019875672,0.00014500243,0.00017640472,0.19668972,0.00021987197,0.0019929195,0.000025946256],"about_ca_topic_score_codex":0.000053111857,"about_ca_topic_score_gemma":0.000057626272,"teacher_disagreement_score":0.60125095,"about_ca_system_score_codex":0.000033174787,"about_ca_system_score_gemma":0.000036868714,"threshold_uncertainty_score":0.6334526},"labels":[],"label_agreement":null},{"id":"W2068529456","doi":"10.1016/j.carres.2014.10.003","title":"The core and O-polysaccharide structure of the Caulobacter crescentus lipopolysaccharide","year":2014,"lang":"en","type":"article","venue":"Carbohydrate Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caulobacter crescentus; Chemistry; Lipopolysaccharide; Polysaccharide; Microbiology; Core (optical fiber); Bacterial protein; Biochemistry; Gene","score_opus":0.02460335301644113,"score_gpt":0.2890386610004711,"score_spread":0.26443530798403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068529456","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99564195,0.0021703306,0.0000051147294,0.0011183162,0.00050437363,0.0002860367,0.0000072174926,0.000015296837,0.00025134793],"genre_scores_gemma":[0.9979123,0.00029223642,0.000002686474,0.000042500276,0.0000542367,0.000008927351,0.000006003897,0.000013776109,0.0016673643],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998041,0.0008727842,0.0002755436,0.00020622043,0.00013094865,0.0004735005],"domain_scores_gemma":[0.9983076,0.00070211344,0.0000986793,0.00062323385,0.0002441254,0.00002424236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010828174,0.00012320734,0.00017139968,0.00009861937,0.0007668714,0.000049315615,0.000486371,0.0001924577,0.00007179544],"category_scores_gemma":[0.00070068036,0.00006464216,0.00006699669,0.00023762947,0.0008608989,0.0000702996,0.0003104037,0.00065140886,0.00004225774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001345161,0.000007771187,0.001196758,0.000014882788,0.000051697774,3.9577154e-7,0.00028562357,0.0000013899585,0.98807067,0.0055505917,0.0008581662,0.0038275395],"study_design_scores_gemma":[0.00037303456,0.000070662034,0.0072255316,0.00003825934,0.000015234495,0.000014936609,0.00021423917,0.00005182715,0.9742101,0.001868671,0.015833871,0.00008366581],"about_ca_topic_score_codex":0.0002077581,"about_ca_topic_score_gemma":0.000111628164,"teacher_disagreement_score":0.014975706,"about_ca_system_score_codex":0.00003485966,"about_ca_system_score_gemma":0.00010714866,"threshold_uncertainty_score":0.58982325},"labels":[],"label_agreement":null},{"id":"W2068561324","doi":"10.1042/bj20090856","title":"Coactosin-like protein functions as a stabilizing chaperone for 5-lipoxygenase: role of tryptophan 102","year":2009,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Vetenskapsrådet; Karolinska Institutet","keywords":"Arachidonate 5-lipoxygenase; Tryptophan; Docking (animal); Chemistry; In vitro; Chaperone (clinical); Biochemistry; Enzyme; Cell biology; Biology; Amino acid; Arachidonic acid","score_opus":0.008160760702240071,"score_gpt":0.23607315671421095,"score_spread":0.22791239601197089,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068561324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993375,0.004415358,0.000705478,0.0006713857,0.00019997533,0.00030659494,0.000010213444,0.000025942849,0.00029002188],"genre_scores_gemma":[0.9985533,0.000039236045,0.00031788042,0.0000818609,0.00010476705,0.000016722139,0.000054759512,0.000009761942,0.0008217413],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990295,0.0000819677,0.0004063224,0.0001444662,0.00005085593,0.00028689246],"domain_scores_gemma":[0.9994009,0.00006020161,0.00020180171,0.00014902807,0.00015071123,0.000037349782],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025134243,0.00013074161,0.00021867054,0.00010105948,0.00018857076,0.000016803431,0.00014731879,0.00022778762,0.00031945552],"category_scores_gemma":[0.0001886441,0.00011143326,0.00016537234,0.00009679587,0.00008223502,0.00010525012,0.000018535551,0.00027129563,0.00007383468],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001055669,0.00016209217,0.000008735086,0.000008628443,0.00006446885,8.157403e-7,0.00016200716,6.6078417e-7,0.98748064,0.00042984934,0.0014850654,0.009141339],"study_design_scores_gemma":[0.0013379453,0.0006622461,0.0003738146,0.00006338255,0.000031496093,0.00021125756,0.00033684672,0.0000054916673,0.96669817,0.00069938763,0.029457353,0.00012258659],"about_ca_topic_score_codex":0.000004549903,"about_ca_topic_score_gemma":2.3555742e-7,"teacher_disagreement_score":0.027972288,"about_ca_system_score_codex":0.000046577356,"about_ca_system_score_gemma":0.00011476711,"threshold_uncertainty_score":0.45441166},"labels":[],"label_agreement":null},{"id":"W2068671129","doi":"10.1172/jci63528","title":"The NF-κB regulator MALT1 determines the encephalitogenic potential of Th17 cells","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"Deutsche Forschungsgemeinschaft; Canadian Institutes of Health Research; Terry Fox Foundation; Alexander von Humboldt-Stiftung","keywords":"RELB; Experimental autoimmune encephalomyelitis; Cell biology; Neuroinflammation; Biology; Regulator; Interleukin 17; Autoimmunity; Immunology; Cytokine; Transcription factor; Immune system; Inflammation; NFKB1","score_opus":0.039316574740532365,"score_gpt":0.3267949869912838,"score_spread":0.28747841225075144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068671129","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99165535,0.0028255975,0.00012900603,0.0018466363,0.003370124,0.00010672156,0.0000012628984,0.000004779609,0.00006054485],"genre_scores_gemma":[0.9981472,0.0004557216,0.00012312367,0.00018326263,0.0005886074,0.0000019522556,0.0000033286187,0.0000057967036,0.00049101055],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99699324,0.0011491238,0.001500079,0.000064810425,0.00009879241,0.00019392236],"domain_scores_gemma":[0.99653465,0.001345717,0.0015839153,0.00023239588,0.00026577068,0.000037549205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0046419445,0.00009174568,0.000268811,0.000043014148,0.00020108026,0.000017409004,0.00030652253,0.00021118906,0.000053310232],"category_scores_gemma":[0.0013987615,0.00004586435,0.0002862417,0.00009104385,0.0006229101,0.00029430576,0.000043095595,0.00038637483,0.000056396337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055903883,0.00006473687,0.008107621,0.0000106441175,0.00020501205,9.0692885e-7,0.0004030989,0.000020449781,0.9619046,0.0011185635,0.0044370545,0.023168294],"study_design_scores_gemma":[0.0008507088,0.0003121201,0.11891,0.000057431153,0.00016406305,0.00012485852,0.00026749878,0.000030904845,0.84388715,0.0015128341,0.03379895,0.000083494655],"about_ca_topic_score_codex":0.0000068476875,"about_ca_topic_score_gemma":0.0000015827707,"teacher_disagreement_score":0.11801745,"about_ca_system_score_codex":0.000011964294,"about_ca_system_score_gemma":0.0001534585,"threshold_uncertainty_score":0.22951382},"labels":[],"label_agreement":null},{"id":"W2068804121","doi":"10.1371/journal.pone.0105713","title":"TLR Ligands Induce Antiviral Responses in Chicken Macrophages","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":100,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council; Poultry Industry Council; Agriculture and Agri-Food Canada; Canadian Poultry Research Council","keywords":"TLR2; Biology; Interferon; Pattern recognition receptor; Innate immune system; CpG Oligodeoxynucleotide; Viral replication; Virology; Macrophage; Immunity; Toll-like receptor; Virus; Receptor; TLR9; Microbiology; Influenza A virus; Immune system; Immunology; Gene; Gene expression; In vitro","score_opus":0.023456890523161137,"score_gpt":0.226271725091809,"score_spread":0.20281483456864788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068804121","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950523,0.0016108532,0.000007715301,0.00072435854,0.00008982075,0.00014504408,0.0000035760086,0.000064254215,0.0023020832],"genre_scores_gemma":[0.99091643,0.00022118873,0.000048496913,0.00023675992,0.000041722564,0.000018591636,0.000039849016,0.000013976335,0.008462959],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989468,0.0003113209,0.00024525062,0.00018530707,0.000041358162,0.00026995395],"domain_scores_gemma":[0.99941623,0.00021785585,0.00007273147,0.00024775838,0.000036458194,0.000008960025],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00046674226,0.000121055564,0.0002522381,0.00019322998,0.000089144814,0.0000148455,0.00015214575,0.00020646724,0.0002203852],"category_scores_gemma":[0.0004232407,0.00011306855,0.000036958994,0.00014550079,0.00008697667,0.00016322295,0.000058374302,0.0002753627,0.001243774],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060652697,0.0003584633,0.0051649828,0.00002100713,0.00008328534,0.0000036289316,0.00039283416,2.3743205e-7,0.9906947,0.00025596385,0.0003205634,0.002097791],"study_design_scores_gemma":[0.00095600734,0.00020712342,0.05868985,0.00010824024,0.000024750747,0.000004227297,0.00003833431,0.000009269837,0.93650144,0.00007315185,0.0032541065,0.00013350227],"about_ca_topic_score_codex":0.000029876794,"about_ca_topic_score_gemma":0.00000858781,"teacher_disagreement_score":0.05419328,"about_ca_system_score_codex":0.000020236906,"about_ca_system_score_gemma":0.00003297489,"threshold_uncertainty_score":0.9995339},"labels":[],"label_agreement":null},{"id":"W2068929498","doi":"10.1046/j.1525-1373.2000.22304.x","title":"How the Blood Talks to the Brain Parenchyma and the Paraventricular Nucleus of the Hypothalamus During Systemic Inflammatory and Infectious Stimuli","year":2000,"lang":"en","type":"review","venue":"Proceedings of The Society for Experimental Biology and Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":257,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Proinflammatory cytokine; Signal transduction; STAT protein; Inflammation; Cell biology; Biology; Neuroscience; Blood–brain barrier; Transcription factor; Receptor; Janus kinase; Kinase; Central nervous system; Immunology; STAT3","score_opus":0.012489924450452957,"score_gpt":0.26368154539259603,"score_spread":0.2511916209421431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2068929498","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.30029652,0.6953554,4.3779445e-7,0.0020487525,0.00024651113,0.001982383,0.000019371219,0.000010309625,0.000040287974],"genre_scores_gemma":[0.39640832,0.60230875,0.0000031353027,0.00022491226,0.00012402273,0.00036956137,0.000011197048,0.000019912917,0.000530197],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986581,0.00017457607,0.00052787346,0.00029839785,0.00006186896,0.00027915952],"domain_scores_gemma":[0.99840134,0.0006186134,0.00065672374,0.00023450419,0.00006842083,0.000020375437],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010138913,0.00034043775,0.0009051544,0.00003548901,0.0008306567,0.000019045252,0.0004902928,0.00041383842,0.0000063358725],"category_scores_gemma":[0.00029522763,0.00011665115,0.000535798,0.0001738124,0.0025123477,0.00004928736,0.00036821878,0.00043446803,5.830256e-7],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024090293,0.0003589732,0.001321158,0.023961497,0.016818369,0.0000013819576,0.089518376,0.000001667322,0.6834805,0.025197597,0.0111747775,0.14575666],"study_design_scores_gemma":[0.01060149,0.0011685756,0.00043173713,0.009584814,0.0050436803,0.002945849,0.019847374,0.000005009923,0.07140496,0.00043327422,0.8779148,0.0006184482],"about_ca_topic_score_codex":0.000026427602,"about_ca_topic_score_gemma":8.556113e-7,"teacher_disagreement_score":0.86674,"about_ca_system_score_codex":0.000029808674,"about_ca_system_score_gemma":0.000042580905,"threshold_uncertainty_score":0.9256849},"labels":[],"label_agreement":null},{"id":"W2069059519","doi":"10.1186/ar4643","title":"Phenotypic consequences of TLR7-driven interferon and proinflammatory cytokine production in lupus","year":2014,"lang":"en","type":"article","venue":"Arthritis Research & Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Lupus Research Alliance; Canadian Arthritis Network; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Arthritis Society; Central New York Community Foundation; Merck KGaA; Lupus Foundation of America","keywords":"Proinflammatory cytokine; Rheumatology; Medicine; TLR7; Phenotype; Systemic lupus erythematosus; Cytokine; Immunology; Interferon; Internal medicine; Inflammation; Biology; Immune system; Toll-like receptor; Genetics; Gene; Innate immune system","score_opus":0.028425779761982142,"score_gpt":0.2954263653342136,"score_spread":0.2670005855722315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069059519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895417,0.008336667,0.000014736203,0.0009651164,0.00023750842,0.00048616438,0.000001841234,0.000024342035,0.00039191113],"genre_scores_gemma":[0.9898399,0.0094588,0.000041210384,0.000017300368,0.00003612238,0.00006691431,0.0000172472,0.000011188001,0.0005112989],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978672,0.0011510836,0.00032306561,0.00025168105,0.000082919025,0.0003240002],"domain_scores_gemma":[0.9993107,0.00019465564,0.00007403804,0.0002422438,0.00016218613,0.000016221446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016264498,0.00010420472,0.00022722576,0.0003168725,0.00012499328,0.000016689743,0.00014236571,0.00012489335,0.00013592013],"category_scores_gemma":[0.00027702385,0.00009229143,0.00002939798,0.00019493965,0.0008034543,0.0002042017,0.000051014013,0.00033243062,0.00007811501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008835432,0.000049520062,0.0037987826,0.000015410296,0.000022796985,0.0000019094105,0.0011894541,0.0000026401049,0.79260886,0.0010433217,0.0002448453,0.20013894],"study_design_scores_gemma":[0.0020381054,0.0011375445,0.011253079,0.00023922625,0.0000011380621,0.00008329929,0.00039240468,0.000009737884,0.95546746,0.0019295495,0.027328426,0.0001200215],"about_ca_topic_score_codex":0.00015665717,"about_ca_topic_score_gemma":0.00018808444,"teacher_disagreement_score":0.20001893,"about_ca_system_score_codex":0.00003134592,"about_ca_system_score_gemma":0.00007749096,"threshold_uncertainty_score":0.37635353},"labels":[],"label_agreement":null},{"id":"W2069123375","doi":"10.1097/01.tp.0000332376.92291.5e","title":"COMBINATION OF ANTI-LFA-1 AND ANTI-CD154 MONOCLONAL ANTIBODIES INDUCES TISSUE-SPECIFIC TOLERANCE TO NEONATAL PORCINE ISLET XENOGRAFTS","year":2008,"lang":"en","type":"article","venue":"Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Islet; CD154; Monoclonal antibody; Antibody; Immunology; Medicine; Biology; Molecular biology; Endocrinology; CD40; Insulin; Biochemistry; Cytotoxic T cell; In vitro","score_opus":0.016495963806270827,"score_gpt":0.24019683959546928,"score_spread":0.22370087578919845,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069123375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99519455,0.0021769973,0.0015548695,0.00025318892,0.00031912548,0.00028162246,0.00005017276,0.000044083168,0.0001254054],"genre_scores_gemma":[0.9953079,0.0036470671,0.00025262765,0.000038917122,0.000027526099,0.000009286822,0.0005171091,0.000011414831,0.00018814803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906915,0.00010537515,0.00035621616,0.0002146023,0.00006673597,0.00018790418],"domain_scores_gemma":[0.99956715,0.000073765266,0.0001208562,0.000120569326,0.00010089855,0.000016769938],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014326403,0.00015295023,0.00026820228,0.00022112552,0.00019270997,0.000008688888,0.0000889421,0.00014079441,0.00007004195],"category_scores_gemma":[0.000008581725,0.00014990657,0.000034182176,0.00017351462,0.00014440336,0.00028475586,0.000010017973,0.00011567599,0.00007498741],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004928475,0.000059540896,0.0047697034,0.00006981204,0.000036944813,0.000016872762,0.0042772586,0.0000365586,0.98512495,0.0005262635,0.0002133544,0.004375881],"study_design_scores_gemma":[0.0013266485,0.00015932825,0.31279382,0.000063415144,0.000020303352,0.00021450684,0.00008189674,0.000006385484,0.68293995,0.000017221244,0.0022473861,0.00012912904],"about_ca_topic_score_codex":0.000053236112,"about_ca_topic_score_gemma":0.0000042982433,"teacher_disagreement_score":0.30802414,"about_ca_system_score_codex":0.0000106619345,"about_ca_system_score_gemma":0.000023324665,"threshold_uncertainty_score":0.61130124},"labels":[],"label_agreement":null},{"id":"W2069164518","doi":"10.1038/mi.2013.48","title":"Imaging murine NALT following intranasal immunization with flagellin-modified circumsporozoite protein malaria vaccines","year":2013,"lang":"en","type":"article","venue":"Mucosal Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Center for Research Resources; Wake Forest University; National Institute of Allergy and Infectious Diseases; National Institutes of Health; School of Medicine, New York University; York University","keywords":"Flagellin; Germinal center; Circumsporozoite protein; Microfold cell; Biology; Immunology; CD11c; Immune system; Population; Antigen; Immunization; Antibody; Epitope; B cell; Receptor; Medicine","score_opus":0.004838369456303777,"score_gpt":0.19801127119714645,"score_spread":0.19317290174084267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069164518","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98630553,0.0038902762,0.0041252254,0.0022417316,0.0008934444,0.0011363503,0.0000032417106,0.0003455585,0.0010586188],"genre_scores_gemma":[0.9956371,0.00008237568,0.0003547586,0.00015924258,0.00006149404,0.00025680749,0.00048188248,0.00007406304,0.002892285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737674,0.0005142835,0.00070679147,0.0005048318,0.00007628702,0.00082103664],"domain_scores_gemma":[0.998601,0.00012575623,0.00030648694,0.0006798836,0.00025702192,0.000029845556],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003884264,0.0004373857,0.000547822,0.0004062709,0.00045779927,0.0000869248,0.0004788498,0.00037978156,0.0014074238],"category_scores_gemma":[0.00011345108,0.0003745361,0.00015821168,0.00040294757,0.00020696803,0.0007758897,0.00015326301,0.0006324836,0.0015073568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059106876,0.000112481765,0.0013649683,0.000023264734,0.00051663886,0.000031795615,0.0004099625,0.000023373106,0.98383176,0.0027239516,0.0003045931,0.010066118],"study_design_scores_gemma":[0.0067817015,0.000571988,0.061863758,0.0001919305,0.00017338726,0.00048444525,0.00073826365,0.00029102268,0.91929084,0.0011414447,0.0074964007,0.00097482646],"about_ca_topic_score_codex":0.0008106894,"about_ca_topic_score_gemma":0.00002716763,"teacher_disagreement_score":0.06454095,"about_ca_system_score_codex":0.000093131166,"about_ca_system_score_gemma":0.00012698886,"threshold_uncertainty_score":0.99987066},"labels":[],"label_agreement":null},{"id":"W2069212946","doi":"10.1016/j.brainresbull.2011.09.006","title":"Circulating IL-6 contributes to peripheral LPS-induced mPGES-1 expression in the rat brain","year":2011,"lang":"en","type":"article","venue":"Brain Research Bulletin","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"Canadian Institutes of Health Research; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft","keywords":"Inflammation; Endocrinology; Cytokine; Internal medicine; SOCS3; STAT protein; Biology; Lipopolysaccharide; STAT3; Signal transduction; Medicine; Cell biology","score_opus":0.07990501330304484,"score_gpt":0.3330004166413258,"score_spread":0.25309540333828096,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069212946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9554386,0.00061184587,0.00017642538,0.03767622,0.00021824132,0.0010137442,0.0000038098528,0.000048060192,0.0048130127],"genre_scores_gemma":[0.9933449,0.000011418584,0.000090288995,0.0018306323,0.000051164312,0.00024978083,0.00003922527,0.000022213839,0.0043603503],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99401855,0.0041576354,0.00042254484,0.00038555867,0.00016320667,0.0008525053],"domain_scores_gemma":[0.9969842,0.0022116823,0.00006627275,0.00052549515,0.00017894662,0.000033394022],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0068799024,0.00018004887,0.00025046823,0.00036617022,0.00051106396,0.000068926274,0.00065148406,0.00028172176,0.0020927105],"category_scores_gemma":[0.0048851715,0.00013054427,0.00008316417,0.00047726175,0.00017425793,0.00006917079,0.00024555967,0.0008721971,0.0017332055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064530206,0.00007441631,0.00029726778,0.000011889832,0.000018875984,0.00005984736,0.006722985,0.0000017120166,0.84548634,0.00093381276,0.14175016,0.003997364],"study_design_scores_gemma":[0.0018414496,0.0004302336,0.019833049,0.00018691593,0.0000032272756,0.0000730967,0.0058559403,0.0000069570087,0.4583816,0.00043626304,0.51271844,0.00023287027],"about_ca_topic_score_codex":0.00043122028,"about_ca_topic_score_gemma":0.000049453192,"teacher_disagreement_score":0.38710478,"about_ca_system_score_codex":0.00010296304,"about_ca_system_score_gemma":0.000111728456,"threshold_uncertainty_score":0.99904406},"labels":[],"label_agreement":null},{"id":"W2069240580","doi":"10.1016/s0264-410x(02)00549-2","title":"Development of short non-CpG phosphodiester oligonucleotides as immune stimulatory agents","year":2003,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BioPhage Pharma (Canada)","funders":"","keywords":"Phosphodiester bond; Oligonucleotide; CpG Oligodeoxynucleotide; CpG site; Biology; Peripheral blood mononuclear cell; Molecular biology; Immune system; DNA; Biochemistry; Immunology; Gene; DNA methylation; In vitro; RNA; Gene expression","score_opus":0.01349389214211572,"score_gpt":0.25073129387508375,"score_spread":0.23723740173296803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069240580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939973,0.0016895515,0.0001877064,0.000026980802,0.00043990006,0.00019815618,0.0000011557628,0.0000317322,0.0034275507],"genre_scores_gemma":[0.9958756,0.000059511684,0.0005838461,0.000068386136,0.0000072561706,0.000021719574,0.000040616138,0.000017608869,0.0033254456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989182,0.00008340288,0.0005247042,0.00017556116,0.000038500064,0.00025967296],"domain_scores_gemma":[0.9994599,0.000046747617,0.00010912697,0.00028902703,0.00007963887,0.000015512964],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00036130124,0.00016488809,0.00029310456,0.0001189427,0.00013027115,0.0000059028384,0.00014038132,0.00014510179,0.001940474],"category_scores_gemma":[0.00008058533,0.00014497539,0.00007364789,0.00011244169,0.000016744441,0.00010069394,0.000053408065,0.00012698036,0.0010658987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003253898,0.00011696466,0.002967578,0.000027863167,0.0002494061,0.0000036834972,0.001050611,0.000013875018,0.9856638,0.00041286694,0.001260339,0.007907629],"study_design_scores_gemma":[0.0009456595,0.00006639733,0.09002946,0.000040376453,0.000023742166,0.000017958328,0.00016216622,0.0000025999186,0.8043669,0.000023269718,0.10418443,0.00013705464],"about_ca_topic_score_codex":0.0000143414845,"about_ca_topic_score_gemma":0.0000036350987,"teacher_disagreement_score":0.1812969,"about_ca_system_score_codex":0.00003780702,"about_ca_system_score_gemma":0.00011030105,"threshold_uncertainty_score":0.9997119},"labels":[],"label_agreement":null},{"id":"W2069493168","doi":"10.1089/jir.2006.0167","title":"Preparation and Characterization of Monopegylated Human Granulocyte-Macrophage Colony-Stimulating Factor","year":2008,"lang":"en","type":"article","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada)","funders":"","keywords":"PEGylation; Chemistry; Sodium dodecyl sulfate; Chromatography; High-performance liquid chromatography; Size-exclusion chromatography; Polyethylene glycol; PEG ratio; Polyacrylamide gel electrophoresis; Granulocyte macrophage colony-stimulating factor; Gel electrophoresis; Recombinant DNA; Peptide; Bioassay; Biochemistry; In vitro; Biology; Enzyme","score_opus":0.05700557202002377,"score_gpt":0.3624183520511262,"score_spread":0.30541278003110245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069493168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99872166,0.00038235792,0.00026288768,0.0001037751,0.00013065357,0.00022881845,0.0000069480698,0.000009462925,0.00015343053],"genre_scores_gemma":[0.9987061,0.00030409876,0.000025032015,0.0000059063527,0.000050733397,0.000003743868,0.000042493044,0.000013518513,0.00084838667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804443,0.0006462264,0.00078676833,0.00013129826,0.00014925507,0.00024204618],"domain_scores_gemma":[0.9983154,0.00019312826,0.00046648894,0.00015059566,0.00084554154,0.000028856564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010252823,0.00011646463,0.00034076453,0.00050143735,0.00026944818,0.0000186164,0.00017187843,0.00018002634,0.00022481642],"category_scores_gemma":[0.00025855773,0.000096708514,0.00007379082,0.00021782579,0.0002349018,0.00035897957,0.00008201034,0.0005513812,0.000023861678],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023098495,0.00008725611,0.0029139803,0.00003254435,0.00009104134,0.000015203187,0.0015059435,0.000012835053,0.9915932,0.00003283941,0.00012938488,0.0012759153],"study_design_scores_gemma":[0.0013131509,0.0028102552,0.0666671,0.00013705196,0.000011430753,0.0002811531,0.000078336234,0.000108804896,0.927498,0.000013967013,0.0010024772,0.00007831025],"about_ca_topic_score_codex":0.000038526625,"about_ca_topic_score_gemma":0.0000032982794,"teacher_disagreement_score":0.064095244,"about_ca_system_score_codex":0.00008981099,"about_ca_system_score_gemma":0.00010060737,"threshold_uncertainty_score":0.39436588},"labels":[],"label_agreement":null},{"id":"W2069681232","doi":"10.1128/iai.70.4.1997-2009.2002","title":"Host Immune Response to<i>Salmonella enterica</i>Serovar Typhimurium Infection in Mice Derived from Wild Strains","year":2002,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Centre hospitalier de l'Université Laval; Université de Montréal; McGill University Health Centre","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Biology; Spleen; Salmonella enterica; Microbiology; Lipopolysaccharide; Salmonella; Tumor necrosis factor alpha; Immune system; Cytokine; Enterobacteriaceae; Mononuclear phagocyte system; Immunology; Bacteria; Gene; Escherichia coli","score_opus":0.014784306629117464,"score_gpt":0.23270688332278577,"score_spread":0.21792257669366832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2069681232","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960402,0.0010134627,0.00026858607,0.0005255906,0.00084265275,0.00036411334,0.00001526249,0.0001418134,0.00078828644],"genre_scores_gemma":[0.9973674,0.0013086121,0.00003444921,0.00025161877,0.000033298955,0.000040504077,0.000083358645,0.000022960025,0.00085780805],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99756604,0.0012334383,0.00050417933,0.0002981749,0.000047469886,0.00035071708],"domain_scores_gemma":[0.9991179,0.00024431493,0.00015881148,0.00035264064,0.000086678774,0.00003966517],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00063299586,0.00025856897,0.00032944613,0.0004211474,0.000360968,0.000053978525,0.000110920664,0.0003290439,0.0009190642],"category_scores_gemma":[0.00036900758,0.00026949437,0.00009715052,0.0004317756,0.00013117999,0.00034811336,0.00012209924,0.0005843597,0.000948657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012655996,0.00025380016,0.011398709,0.00000934352,0.00007414434,0.0000035376536,0.0017947567,0.000013088836,0.97992826,0.000011939446,0.00024402798,0.0050027855],"study_design_scores_gemma":[0.001616171,0.00038493876,0.74823153,0.00006351479,0.00002233059,0.00004392314,0.00011343478,0.000037676036,0.23280525,0.00001960942,0.01641253,0.00024911665],"about_ca_topic_score_codex":0.008998841,"about_ca_topic_score_gemma":0.00037933752,"teacher_disagreement_score":0.747123,"about_ca_system_score_codex":0.00012467035,"about_ca_system_score_gemma":0.000024089819,"threshold_uncertainty_score":0.9999942},"labels":[],"label_agreement":null},{"id":"W2070068579","doi":"10.1139/y05-065","title":"Fever and lethargy induced by subcutaneous pyrogen infusion in unrestrained rats","year":2005,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; National Research Foundation","keywords":"Bolus (digestion); Lipopolysaccharide; Medicine; Subcutaneous injection; Saline; Endocrinology; Anesthesia; Internal medicine; Continuous infusion; Cytokine; Pharmacology","score_opus":0.008917815787973462,"score_gpt":0.24016480947362878,"score_spread":0.23124699368565532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070068579","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99171835,0.005513101,0.0000019365493,0.0020438852,0.00051354035,0.0001043515,0.000009019092,0.0000041403696,0.000091701826],"genre_scores_gemma":[0.99815464,0.00046327512,0.000013612894,0.001069755,0.0000910489,0.0000032565843,0.000020551191,0.000008796193,0.00017504029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870384,0.0004097956,0.00036776342,0.00014785872,0.00001484233,0.0003558982],"domain_scores_gemma":[0.99943674,0.00016533403,0.00017543652,0.000059400943,0.000059527265,0.00010359474],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029397913,0.00014279778,0.00031198552,0.0002962722,0.0001406867,0.0000061684073,0.00012334017,0.00033142077,0.0013650303],"category_scores_gemma":[0.00003340162,0.00013100717,0.000036936883,0.000087539745,0.00026988104,0.00014124536,0.000020199477,0.0004883833,0.000027223052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039202505,0.000020689968,0.00048151947,0.000010718569,0.00008091674,0.000054665266,0.00060190365,0.000008761292,0.9877559,0.00008381889,0.0046181185,0.005890958],"study_design_scores_gemma":[0.002525529,0.0005854293,0.011355543,0.000017684353,0.00004924765,0.0010765835,0.00009802779,0.000015240881,0.90992147,0.00031124838,0.07385126,0.0001927355],"about_ca_topic_score_codex":0.0006160684,"about_ca_topic_score_gemma":0.0013016476,"teacher_disagreement_score":0.077834435,"about_ca_system_score_codex":0.00005609492,"about_ca_system_score_gemma":0.00035004845,"threshold_uncertainty_score":0.99954784},"labels":[],"label_agreement":null},{"id":"W2070456388","doi":"10.1159/000317035","title":"Gene Expression Profiling of Apoptosis Regulators in Patients with Sepsis","year":2010,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Sepsis; Monocyte; Apoptosis; Immunology; Biology; Immune system; Granulocyte; Immunosuppression; Gene expression; Molecular biology; Gene; Lymphocyte; Genetics","score_opus":0.0056982646176194675,"score_gpt":0.2178236781575752,"score_spread":0.21212541353995573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070456388","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99924123,0.0001244444,0.000020554204,0.000037800193,0.00038970914,0.00010477612,0.0000039245924,0.0000048154716,0.00007273593],"genre_scores_gemma":[0.99898964,0.000021776665,0.00090781366,0.000010417462,0.000010438679,0.0000014687992,0.000022200862,0.000009259491,0.000026989661],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887717,0.00026008952,0.0005824135,0.000061691695,0.00006784135,0.00015082437],"domain_scores_gemma":[0.9986835,0.00007980685,0.0006765605,0.00022594804,0.0003210785,0.0000131170345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072008814,0.00010481054,0.00027720485,0.00030390028,0.00007576086,0.0000062745025,0.00021518381,0.00017925761,0.00009043242],"category_scores_gemma":[0.00019057175,0.00007348421,0.0000704807,0.00018472009,0.0001000593,0.00026899928,0.000051729785,0.0007175919,0.0000056828912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001441695,0.00021908237,0.10148594,0.000013455657,0.00005542605,4.168899e-7,0.00036824125,0.000010753762,0.8947079,0.000015712045,0.00004208322,0.0016392546],"study_design_scores_gemma":[0.0015416819,0.00031631382,0.25998753,0.00009591429,0.00001419928,0.0000064127266,0.00010566283,6.240237e-7,0.7377301,0.000020932575,0.000120975616,0.000059665057],"about_ca_topic_score_codex":0.000027693619,"about_ca_topic_score_gemma":0.000003400613,"teacher_disagreement_score":0.15850161,"about_ca_system_score_codex":0.000025587178,"about_ca_system_score_gemma":0.000078426354,"threshold_uncertainty_score":0.31176198},"labels":[],"label_agreement":null},{"id":"W2070514352","doi":"10.1097/00003246-200007000-00054","title":"Changes in circulating lymphocyte subpopulations and mitogen-stimulated response in a rat infusion model of intra-abdominal infection","year":2000,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lockheed Martin (Canada); Department of National Defence; Defence Research and Development Canada","funders":"","keywords":"Splenocyte; Concanavalin A; Medicine; Lymphocyte; Immune system; Immunology; Lymphocytopenia; Andrology; Interleukin 2; Internal medicine; Leukopenia; Endocrinology; In vitro; Toxicity; Biology","score_opus":0.020900503716913894,"score_gpt":0.2934627533996971,"score_spread":0.2725622496827832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070514352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961822,0.0021595785,0.00014608752,0.001018414,0.00016426973,0.00018941991,0.00000311336,0.000020035839,0.00011689975],"genre_scores_gemma":[0.99954623,0.00016034681,0.000033742384,0.000082809645,0.000021776472,0.000016007654,0.00006367542,0.000008713056,0.00006670648],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875456,0.0004108999,0.00039769607,0.000180314,0.000047507798,0.0002090086],"domain_scores_gemma":[0.99924195,0.00047398597,0.00003622531,0.00012934324,0.00009810298,0.000020402966],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047250238,0.000119066965,0.0002871331,0.00034381184,0.000071046336,0.0000034303496,0.000040598967,0.00021245664,0.00029490306],"category_scores_gemma":[0.0011337809,0.00010661813,0.000022180235,0.00026123427,0.00027279914,0.00008650087,0.000020717753,0.00018398746,0.0000083290715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050098514,0.000035183723,0.008627433,0.000113179405,0.000007099779,0.000012973238,0.005844806,0.0012935854,0.93963635,0.00019670128,0.00001644253,0.03920637],"study_design_scores_gemma":[0.029254612,0.0038717734,0.39106598,0.0036197607,0.00029597105,0.0004163526,0.0074489354,0.098721914,0.46113968,0.0018700697,0.0012646356,0.0010303077],"about_ca_topic_score_codex":0.00047941826,"about_ca_topic_score_gemma":0.0003399886,"teacher_disagreement_score":0.4784967,"about_ca_system_score_codex":0.000100656216,"about_ca_system_score_gemma":0.00006122327,"threshold_uncertainty_score":0.43477613},"labels":[],"label_agreement":null},{"id":"W2070731070","doi":"10.1158/0008-5472.can-06-2381","title":"Toll-like Receptor-7 Tolerizes Malignant B Cells and Enhances Killing by Cytotoxic Agents","year":2007,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Immunovaccine (Canada); University of Toronto; Sanofi (Canada); Sunnybrook Health Science Centre","funders":"Canadian Institutes of Health Research","keywords":"Cytotoxic T cell; Chronic lymphocytic leukemia; TLR7; Toll-like receptor; Cancer research; Receptor; Biology; Tumor necrosis factor alpha; Kinase; Cell biology; Signal transduction; Immunology; Leukemia; Immune system; Innate immune system; Biochemistry","score_opus":0.036779376317135806,"score_gpt":0.34654889899481034,"score_spread":0.30976952267767455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2070731070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853828,0.012499815,0.00013889681,0.0002792464,0.0006881423,0.0002871924,0.000015596615,0.00003218651,0.00067614217],"genre_scores_gemma":[0.9782493,0.006129987,0.000029258872,0.00008080428,0.000066161796,0.000056101526,0.00004379962,0.00001787201,0.015326724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983879,0.00028242092,0.00026659598,0.00030510867,0.000106862026,0.00065113517],"domain_scores_gemma":[0.9993162,0.00025896725,0.00005750988,0.00020366015,0.00012284878,0.000040801053],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015967436,0.00012629287,0.00018416398,0.0001766435,0.000369072,0.00003784204,0.00020351874,0.00020279938,0.0012160095],"category_scores_gemma":[0.000041754378,0.000109319124,0.000037197504,0.00021009991,0.00029988555,0.00013203578,0.00010574222,0.00037613235,0.00049288914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041150014,0.00002557798,0.00013591228,0.000026932665,0.00005034482,0.000004472546,0.0005330315,6.363562e-7,0.9601113,0.000045042172,0.025766982,0.012888251],"study_design_scores_gemma":[0.00036061782,0.00009560669,0.00024648925,0.00006341695,0.000003783858,0.000004394785,0.00041971914,0.0000014397381,0.75250924,0.00001702007,0.24617852,0.000099745055],"about_ca_topic_score_codex":0.0002592158,"about_ca_topic_score_gemma":0.000032058146,"teacher_disagreement_score":0.22041155,"about_ca_system_score_codex":0.0001050677,"about_ca_system_score_gemma":0.00009171531,"threshold_uncertainty_score":0.999697},"labels":[],"label_agreement":null},{"id":"W2071202481","doi":"10.1139/w11-002","title":"Mucosal and systemic immune responses of mice to tetanus toxoid coadministered nasally with AFCo1","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Adjuvant; Toxoid; Immune system; Nasal administration; Immunology; Immunization; Tetanus; Medicine; Antigen; Antibody; Vaccination","score_opus":0.015226195585748009,"score_gpt":0.2026129595923017,"score_spread":0.18738676400655369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071202481","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99050194,0.008036086,0.00008130794,0.00027619101,0.00052536995,0.000199556,0.000056771536,0.0000060242505,0.0003167376],"genre_scores_gemma":[0.9986228,0.000056466095,0.00036802609,0.00014796288,0.000019641313,0.0000030100796,0.00001673161,0.00001789185,0.00074751297],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99827254,0.00044591454,0.0007072893,0.0001665716,0.000015711037,0.00039196506],"domain_scores_gemma":[0.99870545,0.0001515149,0.00048280606,0.00022127536,0.00032043378,0.000118530545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058558467,0.00018927075,0.0005367286,0.00056627294,0.000110582456,0.000009258611,0.00032424106,0.00026588235,0.00019466734],"category_scores_gemma":[0.00018864375,0.00015101553,0.00008118874,0.00013792775,0.00040830713,0.000090063906,0.000028923168,0.00026542487,0.000057665482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002937078,0.000017827893,0.0023710504,0.000031259187,0.00025147744,0.00011643323,0.0024183935,6.435624e-7,0.9902129,0.00016484142,0.0005588632,0.0009192317],"study_design_scores_gemma":[0.0022369367,0.0034875,0.020599918,0.00036193023,0.00013006062,0.025638774,0.0015852384,1.0751335e-7,0.9279343,0.000023289644,0.017709713,0.00029222044],"about_ca_topic_score_codex":0.0016471228,"about_ca_topic_score_gemma":0.0033485985,"teacher_disagreement_score":0.062278587,"about_ca_system_score_codex":0.00007176903,"about_ca_system_score_gemma":0.0011980651,"threshold_uncertainty_score":0.61582345},"labels":[],"label_agreement":null},{"id":"W2071269494","doi":"10.1073/pnas.1116273108","title":"Characterization of dsRNA-induced pancreatitis model reveals the regulatory role of <i>IFN regulatory factor 2</i> ( <i>Irf2</i> ) in <i>trypsinogen5</i> gene transcription","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"Ministry of Education, Culture, Sports, Science and Technology","keywords":"Transcription factor; Interferon regulatory factors; Gene; Biology; Regulatory sequence; IRF8; Computational biology; Genetics; Cancer research","score_opus":0.03568380486616138,"score_gpt":0.24027622802246248,"score_spread":0.2045924231563011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071269494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981396,0.00028627846,0.000002659056,0.00018850804,0.00003711686,0.0002966793,0.000034097924,0.000007773704,0.0010072922],"genre_scores_gemma":[0.999494,0.000115177674,0.00013329614,0.0000886967,0.000014886297,0.0000143126945,0.0000025302475,0.0000061237224,0.00013098089],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998574,0.000051711457,0.0007205315,0.0001953192,0.00029659283,0.00016181312],"domain_scores_gemma":[0.998607,0.00006079976,0.0009782498,0.000030199064,0.00031431933,0.000009460844],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012990275,0.00012087372,0.00027431134,0.00020743562,0.00012069786,0.000004146515,0.00060213724,0.00021289919,0.000023154646],"category_scores_gemma":[0.00013147814,0.000080835394,0.00011113808,0.00047474535,0.00074154785,0.0005301745,0.000056513818,0.00017253711,0.0000013967637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013716021,0.00005866174,0.0029942486,0.000046230572,0.00002669097,2.2064937e-9,0.0015797002,0.000013237231,0.9854125,0.008939391,0.000021100625,0.00077111786],"study_design_scores_gemma":[0.00022980226,0.00004257766,0.23817508,0.000091572234,0.000016131557,0.0000050301674,0.00012714375,0.0000785898,0.75656766,0.0045829876,0.000023917311,0.00005952011],"about_ca_topic_score_codex":0.000020852463,"about_ca_topic_score_gemma":2.5619937e-7,"teacher_disagreement_score":0.23518082,"about_ca_system_score_codex":0.00003170493,"about_ca_system_score_gemma":0.000073716765,"threshold_uncertainty_score":0.32963717},"labels":[],"label_agreement":null},{"id":"W2071315228","doi":"10.1086/341080","title":"Polymorphisms of the Human Leukocyte Antigen DRB1 and DQB1 Genes and the Natural History of Human Papillomavirus Infection","year":2002,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"National Cancer Institute; Ludwig Institute for Cancer Research; McGill University","keywords":"Persistence (discontinuity); Human leukocyte antigen; Cohort; Logistic regression; Haplotype; Confounding; Immunology; Biology; Natural history; Human papillomavirus; Medicine; Gene; Virology; Genotype; Internal medicine; Genetics; Antigen","score_opus":0.009791660967806643,"score_gpt":0.21475715285061314,"score_spread":0.2049654918828065,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071315228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9155682,0.08343001,0.0000038683875,0.0001291799,0.0004524841,0.000131926,0.0000020275866,0.000008177473,0.00027412563],"genre_scores_gemma":[0.9949186,0.004312781,3.7431553e-7,0.00006224152,0.000051133808,0.0000019040773,0.0000012398036,0.000008107938,0.00064364943],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986542,0.00068641064,0.00041953003,0.000060929062,0.00006398729,0.00011495731],"domain_scores_gemma":[0.9987501,0.00022042391,0.0007047412,0.00019276763,0.00011902539,0.00001296407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004192725,0.000117792995,0.00027201703,0.00010394546,0.000336691,0.000007774432,0.00014398918,0.00006892656,0.00009436899],"category_scores_gemma":[0.00010099001,0.000056373057,0.00015274048,0.00007320252,0.0010144912,0.00013530515,0.000067613735,0.0002262679,0.0000023127611],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004433014,0.00011828702,0.0523879,0.000033293443,0.00041470243,0.0000011923242,0.0022365437,0.000011977867,0.93809235,0.00081373466,0.0012988702,0.0041478276],"study_design_scores_gemma":[0.0062297457,0.0007509858,0.75501215,0.00018960402,0.0008835028,0.00086468493,0.0002674918,0.00001419927,0.22899511,0.0011524644,0.0054258797,0.00021418085],"about_ca_topic_score_codex":0.00039404107,"about_ca_topic_score_gemma":0.000036665184,"teacher_disagreement_score":0.70909727,"about_ca_system_score_codex":0.00006161545,"about_ca_system_score_gemma":0.00003979259,"threshold_uncertainty_score":0.3737935},"labels":[],"label_agreement":null},{"id":"W2071621125","doi":"10.1111/cbdd.12278","title":"Homology and Molecular Dynamics Models of Toll‐Like Receptor 7 Protein and Its Dimerization","year":2014,"lang":"en","type":"article","venue":"Chemical Biology & Drug Design","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Kommission für Technologie und Innovation","keywords":"Homology modeling; Docking (animal); Transmembrane protein; Receptor; G protein-coupled receptor; Toll-like receptor; Computational biology; Transmembrane domain; Innate immune system; Dimer; Chemistry; Protein structure; Protein–protein interaction; Biology; Biochemistry; Medicine","score_opus":0.007432775407711608,"score_gpt":0.20213239752034703,"score_spread":0.19469962211263542,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2071621125","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.963071,0.0033364971,0.032524116,0.00041972141,0.000099727215,0.00035373447,0.000007994435,0.00003821174,0.00014903225],"genre_scores_gemma":[0.9983031,0.00013948788,0.00094149093,0.00009935061,0.000009476744,0.000040088576,0.00021282413,0.00001323285,0.00024094802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986517,0.000510152,0.00029780698,0.00029203566,0.000016251915,0.0002320433],"domain_scores_gemma":[0.99940014,0.00021266215,0.00013517759,0.00016044668,0.00006910021,0.000022486238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035365543,0.0001603296,0.00032114275,0.0000790504,0.000058398455,0.0000041631797,0.00011620345,0.00042397637,0.000030691914],"category_scores_gemma":[0.00017500996,0.00014314086,0.000035287107,0.00007111986,0.00035071163,0.00007080159,0.00008390069,0.00017541612,0.000022953853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025341133,0.000027926475,0.000031816337,0.00002328044,0.000055408887,3.4925884e-7,0.00013662069,0.000007080917,0.98003304,0.0135788135,0.000058704198,0.0057935375],"study_design_scores_gemma":[0.00066958077,0.00014581345,0.000013601364,0.000019223236,0.000028085424,0.000024558445,0.000021533911,0.0023970087,0.9915279,0.0043385453,0.00066375744,0.00015038828],"about_ca_topic_score_codex":0.000007925213,"about_ca_topic_score_gemma":2.8821313e-7,"teacher_disagreement_score":0.035232134,"about_ca_system_score_codex":0.00002030193,"about_ca_system_score_gemma":0.000036533907,"threshold_uncertainty_score":0.5837115},"labels":[],"label_agreement":null},{"id":"W2072207757","doi":"10.1089/jir.2011.0091","title":"Negative Regulation of the Type I Interferon Signaling Pathway by Synthetic Toll-Like Receptor 7 Ligands","year":2012,"lang":"en","type":"article","venue":"Journal of Interferon & Cytokine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"TLR7; TLR3; Interferon; Cell biology; STAT2; Biology; STAT1; TLR9; Receptor; Chemistry; Molecular biology; Signal transduction; Toll-like receptor; STAT protein; Biochemistry; Innate immune system; Gene expression; Gene; STAT3; Virology","score_opus":0.03336983438788251,"score_gpt":0.3052876667000093,"score_spread":0.2719178323121268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072207757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994504,0.0027219558,0.00014658857,0.00071762287,0.0012695895,0.00020426116,0.000006798002,0.000007630724,0.0004215809],"genre_scores_gemma":[0.9969793,0.00014134268,0.00002962582,0.000023009845,0.00014923103,0.000004313446,0.000009882755,0.000021739075,0.0026415752],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99729705,0.0010593956,0.00081489695,0.00012775788,0.0002473079,0.00045356507],"domain_scores_gemma":[0.99750865,0.0006583597,0.0005421088,0.00030766247,0.00094004517,0.00004315742],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032726137,0.00015833777,0.0003567366,0.00033776843,0.0001812825,0.00002486554,0.0004967682,0.00022893873,0.0008017201],"category_scores_gemma":[0.00086591986,0.00010149251,0.00018072722,0.0003845868,0.00029577911,0.00036137068,0.00018696336,0.0009832468,0.00014560754],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00379003,0.00015582988,0.00035172928,0.000028436192,0.00016384946,5.652058e-7,0.001548764,0.000009657838,0.98048526,0.00011073576,0.0104713,0.002883861],"study_design_scores_gemma":[0.00069514767,0.0017810832,0.00077329297,0.00048247783,0.000023905204,0.00009251952,0.0010094147,0.0000076150586,0.97793114,0.00005911383,0.017050285,0.00009398657],"about_ca_topic_score_codex":0.000025492742,"about_ca_topic_score_gemma":0.0000020567231,"teacher_disagreement_score":0.006578985,"about_ca_system_score_codex":0.00022195718,"about_ca_system_score_gemma":0.00017176304,"threshold_uncertainty_score":0.8778273},"labels":[],"label_agreement":null},{"id":"W2072492830","doi":"10.2165/00126839-200809030-00001","title":"A Review of the Role of CpG Oligodeoxynucleotides as Toll-Like Receptor 9 Agonists in Prophylactic and Therapeutic Vaccine Development in Infectious Diseases","year":2008,"lang":"en","type":"review","venue":"Drugs in R&D","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; CpG Oligodeoxynucleotide; Toll-like receptor; Immunology; DNA vaccination; Pharmacology; Immune system; Biology; Innate immune system; Immunization; Gene; Genetics","score_opus":0.008426552575936072,"score_gpt":0.2615718066041785,"score_spread":0.25314525402824245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072492830","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.027783962,0.97068566,1.0345278e-7,0.000023081837,0.00015041842,0.0011477801,0.0000055581395,0.000008012419,0.00019541357],"genre_scores_gemma":[0.024776848,0.97475046,0.0000051061775,0.000055454766,0.0000055395103,0.00023977757,0.000044374137,0.000020035617,0.00010238552],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975394,0.0008762292,0.0010768449,0.00024285814,0.000050302013,0.0002143596],"domain_scores_gemma":[0.9988228,0.00025777638,0.0005508386,0.0003160897,0.000042950476,0.000009526575],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034191413,0.00027205743,0.0013213049,0.00032058792,0.000041013274,0.0000036358274,0.00023284164,0.00024654466,0.00006934997],"category_scores_gemma":[0.00020109524,0.00018418492,0.0001549302,0.0004800069,0.000097922915,0.000047713154,0.00012000491,0.00037916188,0.000033251003],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008607005,0.00022550144,0.0012557597,0.031131577,0.00012073291,0.000002187088,0.00085026637,4.6921429e-7,0.00021594237,0.000120940465,0.00004329288,0.9659473],"study_design_scores_gemma":[0.0007067381,0.00007042976,0.0024065964,0.07453814,0.000115581875,0.00008061708,0.000057678382,2.5799372e-7,0.0010141382,0.00008384558,0.92067087,0.0002550847],"about_ca_topic_score_codex":0.00011286607,"about_ca_topic_score_gemma":0.000045444634,"teacher_disagreement_score":0.96569216,"about_ca_system_score_codex":0.00014506458,"about_ca_system_score_gemma":0.000554609,"threshold_uncertainty_score":0.7510843},"labels":[],"label_agreement":null},{"id":"W2072594666","doi":"10.1186/1471-2350-14-47","title":"Genetic variants of MARCO are associated with susceptibility to pulmonary tuberculosis in a Gambian population","year":2013,"lang":"en","type":"article","venue":"BMC Medical Genetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre; McMaster University","funders":"National Institute of Allergy and Infectious Diseases; Medical Research Council; National Institutes of Health; Wellcome Trust; McMaster University","keywords":"Tuberculosis; Mycobacterium tuberculosis; Scavenger receptor; Immunology; Biology; Single-nucleotide polymorphism; Population; Latent tuberculosis; Macrophage; Receptor; Gene; Genetics; Medicine; Pathology; Genotype; In vitro; Endocrinology","score_opus":0.01172494202723687,"score_gpt":0.23206589242310305,"score_spread":0.22034095039586618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072594666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982796,0.00042397605,0.00036732806,0.0002099441,0.000113384405,0.00046725123,0.0000059304843,0.000020296362,0.00011230672],"genre_scores_gemma":[0.99903476,0.00005095647,0.00042627356,0.00010527177,0.000015651121,0.000042155807,0.00008190906,0.000013432703,0.00022955914],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99831086,0.00053607055,0.0004913695,0.00023744741,0.00013551788,0.00028873587],"domain_scores_gemma":[0.9991517,0.0002546617,0.00013837505,0.00028729884,0.00011071342,0.00005723377],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00043167634,0.00013070999,0.0002808112,0.00012982394,0.000039886956,0.0000068368076,0.00017810009,0.00033983614,0.0012694343],"category_scores_gemma":[0.0009798239,0.00010989633,0.00004379087,0.00027145504,0.00009232762,0.00003946381,0.0000708163,0.00017441422,0.00016220237],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001800965,0.00026671813,0.91632915,0.000049437553,0.000049934373,0.0000062257272,0.00017882256,0.00012608015,0.07115002,0.000009038498,0.00019412728,0.0114603555],"study_design_scores_gemma":[0.0006513507,0.00018667024,0.9940406,0.00018153261,0.000020749218,0.000014243503,0.0001059558,0.00049929816,0.004049022,0.00007954762,0.000042613752,0.00012840179],"about_ca_topic_score_codex":0.00066626695,"about_ca_topic_score_gemma":0.0018547293,"teacher_disagreement_score":0.07771147,"about_ca_system_score_codex":0.000058782272,"about_ca_system_score_gemma":0.00012397408,"threshold_uncertainty_score":0.99964356},"labels":[],"label_agreement":null},{"id":"W2072630610","doi":"10.1016/s0264-410x(02)00694-1","title":"Super-activated interferon-regulatory factors can enhance plasmid immunization","year":2003,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McMaster University","funders":"","keywords":"IRF7; Immunization; Interferon regulatory factors; Biology; Vaccinia; Adjuvant; Virology; Plasmid; Antigen; Interferon; Antibody; Immunology; Recombinant DNA; Immune system; Gene; Genetics","score_opus":0.007594626158211688,"score_gpt":0.2188838416529316,"score_spread":0.2112892154947199,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072630610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972025,0.00085196004,0.0001851455,0.00014708137,0.0006448469,0.00014935063,0.000004520848,0.00009965365,0.0007148968],"genre_scores_gemma":[0.9959004,0.000067252025,0.000014227921,0.00005704822,0.0000109344555,0.000009260676,0.00027085855,0.00002040464,0.003649635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902034,0.00023848625,0.000275097,0.00018703191,0.000025612215,0.00025342047],"domain_scores_gemma":[0.9994245,0.00009061644,0.000092501235,0.0003039324,0.000073717565,0.000014733822],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001481246,0.00016792465,0.00020024844,0.00013480497,0.00016107576,0.000011931281,0.00012576072,0.00019069957,0.0016502048],"category_scores_gemma":[0.00016572975,0.0001454593,0.000050981896,0.0001849936,0.00001612751,0.00015207456,0.000026802321,0.00019026984,0.00029302097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017704262,0.000043786244,0.001988574,0.0000067127507,0.00007546208,6.2691186e-7,0.0006624409,0.000011112357,0.994487,0.0006661965,0.0011478672,0.0007331938],"study_design_scores_gemma":[0.0006955217,0.00014109972,0.013200967,0.000021873091,0.000013984205,0.000012757067,0.00032668194,0.0000017914967,0.94578004,0.00002679229,0.039622393,0.00015607532],"about_ca_topic_score_codex":0.00006968135,"about_ca_topic_score_gemma":0.000021931563,"teacher_disagreement_score":0.048706923,"about_ca_system_score_codex":0.0000698282,"about_ca_system_score_gemma":0.00005827481,"threshold_uncertainty_score":0.9992624},"labels":[],"label_agreement":null},{"id":"W2072805330","doi":"10.1126/science.1195491","title":"Intravascular Danger Signals Guide Neutrophils to Sites of Sterile Inflammation","year":2010,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1177,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Chemokine; Inflammasome; Innate immune system; Immunology; Integrin; Immune system; Chemotaxis; Endothelium; Biology; Medicine; Receptor; Internal medicine","score_opus":0.007874520171039748,"score_gpt":0.25500191217260443,"score_spread":0.2471273920015647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2072805330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972399,0.00010891715,0.0002858703,0.00027656334,0.00045353087,0.00016867337,0.0000020537427,0.000024022966,0.0014404531],"genre_scores_gemma":[0.99877995,0.000006916213,0.00044563698,0.00006155972,0.00003350864,0.000010121714,0.000008571528,0.0000033165195,0.0006504052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992376,0.000050298586,0.000245357,0.00017803788,0.00007497612,0.0002137493],"domain_scores_gemma":[0.99931365,0.00004704574,0.000087116445,0.0003155198,0.0002164434,0.000020224486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009760771,0.00007228251,0.000116212876,0.00020424077,0.00013772288,0.000022262877,0.00033334666,0.000082576575,0.00039963305],"category_scores_gemma":[0.00039277892,0.000061303195,0.000035066194,0.00035644486,0.00035974864,0.0003032976,0.00009148766,0.000121886376,0.00044574114],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000027801207,0.000008227807,0.00014304477,0.0000044683884,0.000005905641,3.7303113e-7,0.00046406034,0.000021690781,0.98526347,0.00074947503,0.00020951983,0.013101963],"study_design_scores_gemma":[0.00013382774,0.00007544457,0.013990577,0.0000096024,0.0000050687663,0.000008717836,0.00005087306,0.000014181884,0.93123716,0.000082499944,0.054321814,0.0000702575],"about_ca_topic_score_codex":0.000024944904,"about_ca_topic_score_gemma":0.000011658313,"teacher_disagreement_score":0.054112297,"about_ca_system_score_codex":0.00001253763,"about_ca_system_score_gemma":0.00011503458,"threshold_uncertainty_score":0.572925},"labels":[],"label_agreement":null},{"id":"W2073697450","doi":"10.1073/pnas.1121423109","title":"Lipid-derived nanoparticles for immunostimulatory RNA adjuvant delivery","year":2012,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"National Institute of Biomedical Imaging and Bioengineering; National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; National Institutes of Health","keywords":"TLR7; Adjuvant; Oligonucleotide; Immune system; RNA; Receptor; Toll-like receptor; In vitro; In vivo; Biology; Chemistry; Innate immune system; Immunology; Biochemistry; DNA; Gene","score_opus":0.036932782241590176,"score_gpt":0.28671076977781684,"score_spread":0.24977798753622665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073697450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964128,0.001973975,0.0000010654232,0.0007121837,0.00008684462,0.00019138496,0.0000073443493,0.000011035374,0.00060333457],"genre_scores_gemma":[0.9993591,0.00004058671,0.00022429966,0.00013370214,0.000047611502,0.000015382513,5.430498e-7,0.000003222533,0.00017559923],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925953,0.000012845296,0.00029059866,0.000103808154,0.00013299951,0.00020022225],"domain_scores_gemma":[0.99923915,0.00022326621,0.00031438743,0.000007211433,0.000206451,0.000009514129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00127194,0.00007338556,0.00013226301,0.00009895095,0.0002569035,0.0000066208554,0.00038375665,0.000103384875,0.000023494507],"category_scores_gemma":[0.00050998584,0.00004887758,0.000085334206,0.00019595849,0.000603267,0.0005265303,0.00008461642,0.00008916305,0.000013639984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092422306,0.00003848553,0.0010944533,0.000022150478,0.00002676998,2.1316622e-10,0.0002817013,0.000010113898,0.98562837,0.011168076,0.00075976894,0.00087770954],"study_design_scores_gemma":[0.00030408226,0.0000491701,0.054418974,0.00004085094,0.000016513915,0.000004465456,0.00019219544,0.000031825824,0.94155556,0.0014584843,0.0018693347,0.000058518654],"about_ca_topic_score_codex":0.0000023955697,"about_ca_topic_score_gemma":7.988425e-9,"teacher_disagreement_score":0.05332452,"about_ca_system_score_codex":0.000021348791,"about_ca_system_score_gemma":0.000027665434,"threshold_uncertainty_score":0.22227624},"labels":[],"label_agreement":null},{"id":"W2073739863","doi":"10.1016/j.antiviral.2014.06.020","title":"Analysis of the transcriptome and immune function of monocytes during IFNα-based therapy in chronic HCV revealed induction of TLR7 responsiveness","year":2014,"lang":"en","type":"article","venue":"Antiviral Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto","funders":"Sociale en Geesteswetenschappen, NWO; Virgo Consortium; Bristol-Myers Squibb","keywords":"TLR7; Immunology; Immune system; Cytokine; Monocyte; In vivo; Interferon; Biology; Ex vivo; Transcriptome; Medicine; Toll-like receptor; Innate immune system; Gene expression; Gene","score_opus":0.033448616487475644,"score_gpt":0.31304291380127547,"score_spread":0.2795942973137998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073739863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973214,0.0021295159,0.000044705062,0.000103716244,0.000061313534,0.0002526252,0.0000036081158,0.000004797055,0.000078274665],"genre_scores_gemma":[0.9993324,0.00040987923,0.000002759904,0.0000024481228,0.000006676924,0.0000132745345,0.000015714128,0.0000069168614,0.00020987853],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972878,0.0018068418,0.00042415786,0.00016542323,0.00010749519,0.00020827445],"domain_scores_gemma":[0.99886024,0.00041658265,0.00016941482,0.00032354894,0.00022610425,0.000004102653],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022196616,0.000085160194,0.00035348107,0.0009197047,0.00009782449,0.0000041784747,0.00016260099,0.00015661833,0.00002390082],"category_scores_gemma":[0.00024987588,0.00006314855,0.00012861569,0.0013556727,0.00041908116,0.00011468434,0.000038231632,0.0002745341,0.0000021931842],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038025482,0.000057176607,0.01873067,0.0000764846,0.00024314856,1.4983698e-7,0.00034833048,0.000057165784,0.9644295,0.00016618005,0.0000016513665,0.012087006],"study_design_scores_gemma":[0.0008392671,0.00029305127,0.46714053,0.00005966596,0.000029308008,1.9792003e-7,0.00008822426,0.0000830693,0.5313709,0.000032441294,0.000033532822,0.000029863082],"about_ca_topic_score_codex":0.0005278078,"about_ca_topic_score_gemma":0.00007054143,"teacher_disagreement_score":0.44840986,"about_ca_system_score_codex":0.00005256446,"about_ca_system_score_gemma":0.00013414749,"threshold_uncertainty_score":0.25751233},"labels":[],"label_agreement":null},{"id":"W2073743133","doi":"10.1371/journal.pone.0002119","title":"The Nod-Like Receptor (NLR) Family: A Tale of Similarities and Differences","year":2008,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":421,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Österreichischen Akademie der Wissenschaften","keywords":"Biology; Innate immune system; Apoptosome; Protein family; Leucine-rich repeat; Effector; Pyrin domain; Cell biology; Computational biology; Genetics; Pattern recognition receptor; Signal transduction; Receptor; Caspase; Inflammasome; Gene; Programmed cell death","score_opus":0.03520734068416954,"score_gpt":0.19600803292891295,"score_spread":0.16080069224474342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073743133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991097,0.0075089964,0.000003754373,0.00030948743,0.000080405516,0.00010847969,0.000008239747,0.000021922864,0.0008617147],"genre_scores_gemma":[0.989923,0.0033743102,0.00005062548,0.000050594863,0.000013665175,0.000014688605,0.000016041615,0.0000051831594,0.0065518795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994658,0.00011371672,0.00016741893,0.00008553683,0.000034423796,0.00013310695],"domain_scores_gemma":[0.99950784,0.00022580219,0.000068567395,0.00013771316,0.000053930667,0.0000061218952],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000104433835,0.0000708462,0.0001598437,0.00003211067,0.00027108434,0.0000059028935,0.00009489611,0.00008844864,0.00008262673],"category_scores_gemma":[0.00007912196,0.000048237693,0.00002527414,0.000042124582,0.0003922467,0.000059435693,0.00004258307,0.000104218016,0.00007147211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020629274,0.00015326672,0.004163179,0.000034740395,0.00014205812,5.3036956e-7,0.0009786912,1.8192145e-8,0.992302,0.00025057184,0.0011317389,0.0006369168],"study_design_scores_gemma":[0.0006843867,0.0002993312,0.078048825,0.000089922374,0.00005797522,0.00001021583,0.00092669646,0.000004972553,0.91373086,0.00012549658,0.0058897985,0.00013150435],"about_ca_topic_score_codex":0.000032400538,"about_ca_topic_score_gemma":0.000004810841,"teacher_disagreement_score":0.07857112,"about_ca_system_score_codex":0.0000055404453,"about_ca_system_score_gemma":0.000026409974,"threshold_uncertainty_score":0.2084989},"labels":[],"label_agreement":null},{"id":"W2073788452","doi":"10.1046/j.1365-2567.2001.01189.x","title":"The 3′‐untranslated region of human interleukin‐8 mRNA suppresses IL‐8 gene expression","year":2001,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Untranslated region; Chloramphenicol acetyltransferase; Molecular biology; Gene; Biology; Gene expression; Reporter gene; Messenger RNA; Three prime untranslated region; Regulatory sequence; Regulation of gene expression; Transcription (linguistics); Genetics","score_opus":0.012896549859778441,"score_gpt":0.24423920937784202,"score_spread":0.23134265951806357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073788452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98461336,0.012006104,0.00022232093,0.0006616619,0.0008710579,0.00021638571,0.000002931013,0.00008551132,0.0013206955],"genre_scores_gemma":[0.9947854,0.0021977322,0.00001642104,0.00003320834,0.000030757197,0.000028557191,0.0000956101,0.000019428027,0.002792882],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982722,0.0005111132,0.0005476181,0.00022618525,0.000035229077,0.00040769568],"domain_scores_gemma":[0.9987443,0.00026607464,0.00026907356,0.0005844569,0.00012685025,0.000009221194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025098943,0.00018652836,0.00029364898,0.00013866648,0.00045582597,0.000014541822,0.00046805496,0.00037846205,0.00023049896],"category_scores_gemma":[0.000089309564,0.00013203961,0.000120215554,0.00015665873,0.00056229834,0.00013797336,0.000105436484,0.00033551492,0.00022853121],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010302971,0.00006362404,0.00033334197,0.000005765565,0.0001728854,0.000016575465,0.0005681554,0.0000020906648,0.9863167,0.00089739385,0.001563627,0.009029561],"study_design_scores_gemma":[0.0011159822,0.0003373159,0.004348168,0.000045060508,0.00002531053,0.00039747637,0.00022549012,9.766841e-7,0.8824943,0.00040804246,0.11047433,0.00012756184],"about_ca_topic_score_codex":0.00013266111,"about_ca_topic_score_gemma":0.00003013019,"teacher_disagreement_score":0.1089107,"about_ca_system_score_codex":0.000028484847,"about_ca_system_score_gemma":0.000041537423,"threshold_uncertainty_score":0.5384419},"labels":[],"label_agreement":null},{"id":"W2073947498","doi":"10.1016/j.immuni.2009.06.005","title":"cIAP Proteins: Keystones in NOD Receptor Signal Transduction","year":2009,"lang":"en","type":"letter","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"","keywords":"Nod; Biology; NOD1; Cell biology; Signal transduction; Innate immune system; Ubiquitin; Signal transducing adaptor protein; Function (biology); Immunity; Receptor; NOD2; Immunology; Immune system; Genetics; Gene","score_opus":0.013652230677548633,"score_gpt":0.22977185392147634,"score_spread":0.2161196232439277,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2073947498","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.41880968,0.013956736,0.00040336797,0.55267704,0.0046766256,0.0035740132,0.00011323092,0.0006004765,0.005188833],"genre_scores_gemma":[0.36582407,0.0029502735,0.00091850356,0.44070476,0.006811696,0.0015914467,0.038655132,0.0005703305,0.14197378],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968322,0.0015672612,0.0006441784,0.00033880488,0.00007525944,0.0005423217],"domain_scores_gemma":[0.9989051,0.00013681875,0.000270157,0.0005781893,0.00010114625,0.0000085411275],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0006103973,0.00040359213,0.00057006197,0.00046913937,0.00024368247,0.000030403933,0.00044437338,0.002082502,0.0030606657],"category_scores_gemma":[0.00007735582,0.00039676283,0.00021108975,0.00026014246,0.0001779659,0.00024068216,0.000039754963,0.003922634,0.0017888426],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005141067,0.00014312835,0.00001915215,0.00010604916,0.00013588284,0.000033296707,0.0009850486,0.0000023347447,0.5779476,0.000012699949,0.39351663,0.02658402],"study_design_scores_gemma":[0.0008955266,0.00024105865,0.00092050043,0.0002277178,0.000034937133,0.00006457267,0.00008047646,6.2486635e-7,0.19650008,0.00012491837,0.80051476,0.00039484847],"about_ca_topic_score_codex":0.00083955866,"about_ca_topic_score_gemma":0.00003544327,"teacher_disagreement_score":0.4069981,"about_ca_system_score_codex":0.00018547484,"about_ca_system_score_gemma":0.00017214502,"threshold_uncertainty_score":0.9998484},"labels":[],"label_agreement":null},{"id":"W2074334451","doi":"10.1007/s00441-010-1084-3","title":"Innate immunity: complex specificity","year":2010,"lang":"en","type":"editorial","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Innate immune system; Immunity; Molecular medicine; Human genetics; Biology; Computational biology; Immunology; Immune system; Biochemistry; Cell; Gene","score_opus":0.04418270591501013,"score_gpt":0.3480117528901992,"score_spread":0.3038290469751891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074334451","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05578958,0.022256523,0.000014040393,0.0004581006,0.8825255,0.0009866883,0.0001249478,0.00013112293,0.037713494],"genre_scores_gemma":[0.091981955,0.020174867,0.000089457135,0.000021036556,0.5776897,0.00013666518,0.009781017,0.0001917618,0.29993355],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99699223,0.0011622357,0.00038887776,0.00046933704,0.00024182526,0.000745472],"domain_scores_gemma":[0.9968228,0.0017848547,0.00012171629,0.00067646825,0.0005463683,0.000047823214],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0024676467,0.00029031158,0.00049442577,0.000448293,0.0007976245,0.0001259107,0.00058034575,0.00224943,0.0024033305],"category_scores_gemma":[0.0006705559,0.00026194204,0.000065154905,0.0002404291,0.0007977065,0.00009471764,0.0005577877,0.005456335,0.0035356982],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001651046,0.000049226423,0.0000024952355,0.000089868685,0.00003022708,0.000011463319,0.00016203872,2.4066422e-8,0.42584172,0.000060465565,0.5664352,0.007152148],"study_design_scores_gemma":[0.0005858245,0.00020365902,0.00007631126,0.00004156558,0.000013853208,0.0000070115816,0.0000894562,6.81628e-7,0.20925537,0.00016115437,0.7893537,0.00021141979],"about_ca_topic_score_codex":0.00074118783,"about_ca_topic_score_gemma":0.00006626304,"teacher_disagreement_score":0.30483583,"about_ca_system_score_codex":0.000057401496,"about_ca_system_score_gemma":0.00034444346,"threshold_uncertainty_score":0.99998325},"labels":[],"label_agreement":null},{"id":"W2074459742","doi":"10.1155/2010/940383","title":"Normal Human Gingival Epithelial Cells Sense<i>C. parapsilosis</i>by Toll-Like Receptors and Module Its Pathogenesis through Antimicrobial Peptides and Proinflammatory Cytokines","year":2010,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Candida parapsilosis; Proinflammatory cytokine; Innate immune system; Downregulation and upregulation; Beta defensin; Biology; Immunology; Receptor; Microbiology; Molecular biology; Immune system; Inflammation; Biochemistry; Candida albicans","score_opus":0.005099702196097653,"score_gpt":0.2081485889057458,"score_spread":0.20304888670964816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074459742","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968804,0.00044280835,0.000037019265,0.00023974213,0.001602163,0.0005268219,0.00005856098,0.00009669071,0.00011577379],"genre_scores_gemma":[0.9983544,0.0004166279,0.00026733402,0.000035360194,0.00021581312,0.00003914374,0.00027020127,0.00003914499,0.00036197458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980224,0.00025117648,0.0008016618,0.0003993188,0.00011978591,0.00040568804],"domain_scores_gemma":[0.99879277,0.00015724041,0.0005176854,0.00029585266,0.00018749246,0.000048938287],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006139181,0.00035472307,0.0004676554,0.00021278614,0.00038932034,0.000044048982,0.00014919783,0.0004852814,0.00008486028],"category_scores_gemma":[0.00014272271,0.00033796573,0.00009820607,0.00013418758,0.00042676582,0.00070682954,0.00011520266,0.000353845,0.00006434853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024176433,0.00004037294,0.0023063219,0.00014872297,0.00008144217,0.0000034878192,0.0014297916,0.0000064404585,0.9903257,0.00029989443,0.0017115548,0.0034044886],"study_design_scores_gemma":[0.0014491583,0.00012936012,0.005693574,0.000047069236,0.00007631251,0.000048887654,0.00013122344,0.000028522514,0.9825098,0.000054768778,0.00947803,0.0003532986],"about_ca_topic_score_codex":0.00004978282,"about_ca_topic_score_gemma":0.000033983153,"teacher_disagreement_score":0.007815924,"about_ca_system_score_codex":0.00002104196,"about_ca_system_score_gemma":0.00006863666,"threshold_uncertainty_score":0.99990726},"labels":[],"label_agreement":null},{"id":"W2074609644","doi":"10.1097/00003246-200208000-00013","title":"Alterations in lymphocyte function and relation to phospholipid composition after burn injury in humans","year":2002,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta; Medical Council of Canada","funders":"","keywords":"Burn injury; Phospholipid; Medicine; Lymphocyte; Total body surface area; CD8; Immune system; Immunology; Internal medicine; Endocrinology; Andrology; Biochemistry; Biology; Surgery; Membrane","score_opus":0.011304761740280679,"score_gpt":0.26454246019216243,"score_spread":0.25323769845188177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074609644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98807985,0.005646331,0.00060366595,0.003912457,0.000457526,0.0002126239,0.000003830423,0.00002451161,0.0010591837],"genre_scores_gemma":[0.99881047,0.00006916383,0.000020696756,0.0007380625,0.00006119091,0.00006107788,0.00009739558,0.0000072195767,0.0001346943],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991439,0.00015597761,0.00029777715,0.00018448707,0.000038527814,0.00017932782],"domain_scores_gemma":[0.9996571,0.00011528627,0.000016829103,0.000116722826,0.000070976595,0.000023066847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013200242,0.00009808424,0.00016457276,0.00025270774,0.00007500746,0.00000821084,0.000032341075,0.0001423908,0.0007111414],"category_scores_gemma":[0.00018010387,0.00008959488,0.00001586321,0.00017716236,0.00012908824,0.00014826114,0.000019858377,0.0001736626,0.00016621171],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043776487,0.00027295062,0.039765365,0.00023759861,0.000027438047,0.00006119639,0.029682467,0.00003321581,0.86289436,0.016077243,0.002051082,0.04451943],"study_design_scores_gemma":[0.0077380138,0.0027184756,0.9338865,0.0009950218,0.00011963845,0.00007747786,0.0048515177,0.00027799417,0.02847976,0.0011896204,0.019118462,0.0005474786],"about_ca_topic_score_codex":0.00009506967,"about_ca_topic_score_gemma":0.000031535394,"teacher_disagreement_score":0.89412117,"about_ca_system_score_codex":0.00012095905,"about_ca_system_score_gemma":0.000008333958,"threshold_uncertainty_score":0.7786499},"labels":[],"label_agreement":null},{"id":"W2074740959","doi":"10.1016/j.coi.2010.04.010","title":"Nod-like receptors: sentinels at host membranes","year":2010,"lang":"en","type":"review","venue":"Current Opinion in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Howard Hughes Medical Institute","keywords":"Innate immune system; Receptor; Biology; Nod; Pattern recognition receptor; Cytosol; Cell biology; Immune system; Immunology; Gene; Biochemistry","score_opus":0.05424258037568792,"score_gpt":0.3448396914576427,"score_spread":0.2905971110819548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2074740959","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00022235115,0.90439063,0.000006564513,0.00006556972,0.09387193,0.0010223216,0.000038276554,0.00014326541,0.00023908843],"genre_scores_gemma":[0.000008299707,0.99073267,0.000010159599,0.000008454298,0.00037643788,0.000409075,0.0047071143,0.00009563901,0.0036521354],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99481213,0.0014845338,0.0017607978,0.0009064183,0.00007523218,0.00096087565],"domain_scores_gemma":[0.9971288,0.0006252845,0.0009993247,0.0011033963,0.00011333274,0.000029885698],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0006626943,0.0008879104,0.0023990679,0.0010997159,0.0002834316,0.000033539658,0.0009429162,0.0024376013,0.0024464172],"category_scores_gemma":[0.00027254928,0.000781122,0.0007128216,0.00055987824,0.0005554934,0.00018836159,0.00065731845,0.0027455576,0.01010944],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016770716,0.00025012915,0.000024451576,0.007973688,0.00037195702,0.000002016772,0.00025268493,9.5529856e-8,0.0019811892,0.0004360654,0.011770133,0.97676986],"study_design_scores_gemma":[0.0010408334,0.000087490414,0.000045608984,0.007740118,0.00013240548,0.00035845625,0.00002652224,2.3241145e-7,0.0003745558,0.00001373593,0.9894632,0.0007168058],"about_ca_topic_score_codex":0.000027628488,"about_ca_topic_score_gemma":0.000007815912,"teacher_disagreement_score":0.9776931,"about_ca_system_score_codex":0.0002934359,"about_ca_system_score_gemma":0.00040221153,"threshold_uncertainty_score":0.9995552},"labels":[],"label_agreement":null},{"id":"W2075011079","doi":"10.1016/s0378-1119(02)00795-3","title":"Molecular cloning and expression of gerbil granulocyte/macrophage colony-stimulating factor","year":2002,"lang":"en","type":"article","venue":"Gene","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"McGill University","keywords":"Biology; Gerbil; Complementary DNA; Molecular biology; Open reading frame; Reverse transcriptase; Cloning (programming); Granulocyte macrophage colony-stimulating factor; Gene; Peptide sequence; Polymerase chain reaction; Biochemistry; Cytokine; Immunology; Internal medicine","score_opus":0.012543712376625138,"score_gpt":0.22136549932046362,"score_spread":0.2088217869438385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075011079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907094,0.008087261,0.0004934314,0.000033450204,0.00012023081,0.0001140252,0.000005125506,0.000026772943,0.00041026314],"genre_scores_gemma":[0.99895406,0.000117364405,0.00031167016,0.000028624652,0.000009478435,0.000005686895,0.000017512752,0.000009559217,0.0005460213],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993438,0.00011743846,0.0002099481,0.00013844187,0.000026040685,0.00016429387],"domain_scores_gemma":[0.9996373,0.0000671778,0.00009943734,0.00015133116,0.0000339124,0.000010864262],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009154747,0.00009224371,0.00016151674,0.000059327438,0.00010619653,0.000006175797,0.00006297664,0.0001359652,0.00037923967],"category_scores_gemma":[0.00006704357,0.000083181476,0.00003995005,0.000055972712,0.00006436017,0.000060198276,0.000052786003,0.00010379196,0.00006445713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055512417,0.0000173808,0.0005761564,0.000014976317,0.000017796598,0.0000056176054,0.00054283603,0.000053824053,0.993187,0.00002400541,0.000085102285,0.0054197703],"study_design_scores_gemma":[0.0006783831,0.00009442674,0.0030103547,0.000029953413,0.000010665306,0.00002186575,0.000027485647,0.00015376446,0.9944089,0.000012909076,0.0014657167,0.00008556395],"about_ca_topic_score_codex":0.000016401389,"about_ca_topic_score_gemma":3.8033428e-7,"teacher_disagreement_score":0.008244642,"about_ca_system_score_codex":0.0000105280205,"about_ca_system_score_gemma":0.0000057914476,"threshold_uncertainty_score":0.41524085},"labels":[],"label_agreement":null},{"id":"W2075031691","doi":"10.1016/j.immuni.2010.08.006","title":"Chemokines: Sirens of Neutrophil Recruitment—but Is It Just One Song?","year":2010,"lang":"en","type":"letter","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Chemokine; Immunology; Cell biology; Inflammation","score_opus":0.11648362322626961,"score_gpt":0.3112070123916828,"score_spread":0.1947233891654132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075031691","genre_codex":"empirical","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.53414065,0.0034474772,0.000018954523,0.44593418,0.004071409,0.0022588365,0.00045060457,0.00018791163,0.009489977],"genre_scores_gemma":[0.18048052,0.0026493096,0.00023321153,0.6036595,0.0028850425,0.000887735,0.016710773,0.0003899412,0.19210394],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99740833,0.000646595,0.00085510686,0.00037768163,0.00010564393,0.0006066316],"domain_scores_gemma":[0.9970367,0.00036622642,0.0007264214,0.0015733618,0.00028103156,0.000016242559],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0004590668,0.0005030788,0.0009059512,0.0003121012,0.00030134205,0.000025888652,0.0008614576,0.0041950406,0.004948823],"category_scores_gemma":[0.00017803432,0.00049091975,0.00038500974,0.00018746073,0.0005147043,0.00014634783,0.00028249883,0.0069099804,0.0016759903],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023014363,0.00012418245,0.0000172453,0.00016521504,0.0004405264,0.000012992362,0.0007198643,1.0480355e-7,0.45707068,0.00001180241,0.53838956,0.002817704],"study_design_scores_gemma":[0.0007874929,0.0001771587,0.0004866502,0.0001560694,0.00016623469,0.000046358346,0.00012480807,2.8925461e-7,0.3572299,0.000040009447,0.6404762,0.0003087922],"about_ca_topic_score_codex":0.00097608136,"about_ca_topic_score_gemma":0.000026201984,"teacher_disagreement_score":0.35366014,"about_ca_system_score_codex":0.00007594303,"about_ca_system_score_gemma":0.00023546966,"threshold_uncertainty_score":0.99975425},"labels":[],"label_agreement":null},{"id":"W2075271104","doi":"10.3791/52036","title":"Sublingual Immunotherapy as an Alternative to Induce Protection Against Acute Respiratory Infections","year":2014,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Institute Pasteur De Lille; Agencia Nacional de Investigación e Innovación","keywords":"Slit; Medicine; Nasal administration; Immune system; Immunology; Sublingual administration; Bronchoalveolar lavage; Pneumococcal pneumonia; Respiratory tract; Streptococcus pneumoniae; Vaccination; Immunotherapy; Lung; Respiratory system; Biology; Pharmacology; Microbiology; Internal medicine; Antibiotics","score_opus":0.03231528410408949,"score_gpt":0.4126961455330767,"score_spread":0.3803808614289872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2075271104","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932084,0.00032202963,0.004077185,0.00013930241,0.0014690618,0.00030414318,0.0000015346369,0.000033413977,0.00044489506],"genre_scores_gemma":[0.9983604,0.00004682963,0.00014224925,0.0007495149,0.00025694186,0.00003397545,0.000009371886,0.000027513679,0.00037322904],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980541,0.00081497495,0.00062369544,0.00016506163,0.00010750792,0.00023468262],"domain_scores_gemma":[0.9988326,0.000046361132,0.00052930973,0.00021448063,0.00032595012,0.000051298113],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082953036,0.00017823919,0.0003142657,0.00047564533,0.00024426886,0.00005056795,0.00022744748,0.00018504089,0.00014788526],"category_scores_gemma":[0.00019589475,0.00015530645,0.00012995131,0.0001991832,0.00005138779,0.0005162846,0.00003732225,0.00033446602,0.00024298912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017873471,0.00033930794,0.000041668747,0.0000018544954,0.00038354727,0.000004362091,0.003623996,0.00001872587,0.9815058,0.00021822249,0.00032385066,0.011751277],"study_design_scores_gemma":[0.0033362159,0.0033805822,0.00046068357,0.00005155368,0.00002046073,0.00007068843,0.0003862337,0.00000837425,0.9130385,0.00010889801,0.07898052,0.00015727074],"about_ca_topic_score_codex":0.000045235345,"about_ca_topic_score_gemma":0.0000015407063,"teacher_disagreement_score":0.078656666,"about_ca_system_score_codex":0.00013960153,"about_ca_system_score_gemma":0.0001238454,"threshold_uncertainty_score":0.6333213},"labels":[],"label_agreement":null},{"id":"W2076038066","doi":"10.1007/s11095-007-9428-8","title":"Influence of Plasma Cholesterol and Triglyceride Concentrations and Eritoran (E5564) Micelle Size on its Plasma Pharmacokinetics and Ex Vivo Activity Following Single Intravenous Bolus Dose Into Healthy Female Rabbits","year":2007,"lang":"en","type":"article","venue":"Pharmaceutical Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia; Eisai","keywords":"Pharmacokinetics; Triglyceride; Ex vivo; Internal medicine; Pharmacodynamics; Endocrinology; Cholesterol; Pharmacology; In vivo; Bolus (digestion); Chemistry; Blood plasma; Medicine; Biology","score_opus":0.07804843932173165,"score_gpt":0.4022562446270074,"score_spread":0.3242078053052757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076038066","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597895,0.0019726288,0.000021405123,0.0008245075,0.00016338323,0.0007258274,0.000011637843,0.000028800052,0.00027283916],"genre_scores_gemma":[0.9982993,0.0012215402,0.00005572632,0.00014543966,0.00004458932,0.000018030603,0.000005662861,0.000020483682,0.00018921278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975927,0.0006544723,0.00042763594,0.00041254438,0.00019594937,0.00071669],"domain_scores_gemma":[0.9962645,0.0031293947,0.00009131732,0.00017014309,0.0001656323,0.00017896944],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018054374,0.00021013283,0.000342807,0.0002065128,0.00046149132,0.00005381415,0.00014903929,0.00023058066,0.00004768848],"category_scores_gemma":[0.00095381704,0.00020470266,0.000041604806,0.00026671606,0.000612557,0.0002468955,0.00018260817,0.0008541841,0.000025142726],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006985739,0.0003053262,0.00080288283,0.00016909908,0.00009112892,0.000021057118,0.00136346,0.000019683484,0.9567971,0.00009481418,0.0000389916,0.033310715],"study_design_scores_gemma":[0.005218594,0.00090592576,0.011216837,0.000093227056,0.000041174044,0.00004955031,0.00022024936,0.0004479527,0.9733672,0.000020280824,0.008242898,0.00017607432],"about_ca_topic_score_codex":0.000085538515,"about_ca_topic_score_gemma":0.00002605555,"teacher_disagreement_score":0.03313464,"about_ca_system_score_codex":0.00009824407,"about_ca_system_score_gemma":0.00012760636,"threshold_uncertainty_score":0.8347532},"labels":[],"label_agreement":null},{"id":"W2076080662","doi":"10.1016/j.cardiores.2006.09.011","title":"Toll-like receptor stimulation in cardiomyoctes decreases contractility and initiates an NF-κB dependent inflammatory response☆","year":2006,"lang":"en","type":"article","venue":"Cardiovascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":372,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"TLR5; TLR4; Toll-like receptor; TLR2; Receptor; Pyrrolidine dithiocarbamate; Cell biology; Biology; Signal transduction; TLR3; Inflammation; Chemistry; NF-κB; Immunology; Innate immune system; Biochemistry","score_opus":0.030845296901235726,"score_gpt":0.30156590112914966,"score_spread":0.27072060422791394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076080662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9754502,0.022850273,0.000083794985,0.000066333574,0.00019880317,0.0007458275,0.000010967776,0.0000769255,0.0005168793],"genre_scores_gemma":[0.9987137,0.0004024957,0.000039933537,0.00001190263,0.000082565595,0.00013234091,0.0002394629,0.000028781184,0.00034886718],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9919683,0.0060419324,0.00049114914,0.0005615241,0.00030168524,0.0006354181],"domain_scores_gemma":[0.9975426,0.0011513074,0.000059645885,0.0007891206,0.00040444592,0.000052874915],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.008756615,0.00022264934,0.0005118745,0.0006116795,0.00037247228,0.00009793089,0.00022532203,0.0003948384,0.00010352001],"category_scores_gemma":[0.0011623133,0.00021951726,0.00025869397,0.00032568077,0.00039518104,0.000536481,0.00014774315,0.00061992573,0.0001868165],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01012764,0.00031154932,0.078242846,0.00011893004,0.0011329951,0.00023256219,0.00069385127,0.0011715891,0.8740085,0.00051991275,0.000744239,0.03269543],"study_design_scores_gemma":[0.0036493465,0.00024826857,0.6253583,0.00008519143,0.00006874693,0.0001757124,0.00079834874,0.00005929551,0.30582315,0.00030664288,0.06303293,0.00039411927],"about_ca_topic_score_codex":0.0013143601,"about_ca_topic_score_gemma":0.0001376042,"teacher_disagreement_score":0.5681853,"about_ca_system_score_codex":0.00021525302,"about_ca_system_score_gemma":0.00025584793,"threshold_uncertainty_score":0.8951654},"labels":[],"label_agreement":null},{"id":"W2076129476","doi":"10.1152/ajpgi.00089.2010","title":"Oxidative stress enhances IL-8 and inhibits CCL20 production from intestinal epithelial cells in response to bacterial flagellin","year":2010,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Flagellin; TLR5; CCL20; Cell biology; p38 mitogen-activated protein kinases; Chemokine; Interleukin 8; Innate immune system; Biology; Interleukin 22; Signal transduction; Oxidative stress; Kinase; Immune system; Protein kinase A; TLR4; Microbiology; Chemokine receptor; TLR2; Immunology; Inflammation; Receptor; Cytokine; Interleukin; Biochemistry","score_opus":0.005054568755966181,"score_gpt":0.2120876941301693,"score_spread":0.20703312537420313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076129476","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984539,0.000097571465,0.00009297213,0.00037998697,0.0007128279,0.00019266715,0.000048541595,0.000015699925,0.0000057924444],"genre_scores_gemma":[0.9967875,0.000078685756,0.002531985,0.00009194492,0.00040160894,0.000009901907,0.000034189645,0.000017431023,0.000046763358],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972364,0.001133374,0.00066249375,0.0004784745,0.000055373886,0.0004339244],"domain_scores_gemma":[0.99784034,0.00093602744,0.0006930464,0.00020058788,0.0002454,0.00008457093],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00056805136,0.00032024801,0.0007275661,0.0003265116,0.00012777637,0.000017088867,0.00024253385,0.00010396267,0.00013943375],"category_scores_gemma":[0.0006704207,0.00026281938,0.000084584266,0.00021008331,0.0012797609,0.00024988217,0.00016320699,0.0009194823,0.0000524698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01855698,0.00017181216,0.00044131072,0.000011170281,0.000058881156,0.000012354894,0.0011105073,0.000018602299,0.9742676,0.000034739784,0.000058020007,0.0052580438],"study_design_scores_gemma":[0.0009038308,0.004218222,0.23166586,0.00014987602,0.000035287645,0.0005630942,0.00071828347,0.000009411525,0.7608227,0.0003362748,0.0003765485,0.00020061278],"about_ca_topic_score_codex":0.000326619,"about_ca_topic_score_gemma":0.000078154655,"teacher_disagreement_score":0.23122455,"about_ca_system_score_codex":0.000024024568,"about_ca_system_score_gemma":0.00012571315,"threshold_uncertainty_score":0.9999824},"labels":[],"label_agreement":null},{"id":"W2076360156","doi":"10.1111/j.1365-3083.2009.02232.x","title":"Differential Activation of Dendritic Cells by Toll‐like Receptor Agonists Isolated from the Gram‐positive Vaccine Vector <i>Streptococcus gordonii</i>","year":2009,"lang":"en","type":"article","venue":"Scandinavian Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus gordonii; TRIF; Biology; Cell biology; Toll-like receptor; Microbiology; Innate immune system; Immune system; Immunology; Streptococcaceae","score_opus":0.0040567320524994175,"score_gpt":0.20710786444783416,"score_spread":0.20305113239533473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076360156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908228,0.004203783,0.0009468507,0.0017702539,0.0017925506,0.00030137232,0.00007265911,0.000019909385,0.000069800066],"genre_scores_gemma":[0.9985264,0.00053009484,0.0000344576,0.00017213858,0.00009418682,0.0000047173294,0.00024667245,0.000018029803,0.0003732995],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99756193,0.00074251543,0.0009853439,0.00021647492,0.00008526255,0.00040845494],"domain_scores_gemma":[0.9978416,0.00041418194,0.0010661914,0.00033307154,0.00031545473,0.00002952217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022309994,0.0002825753,0.00064117566,0.00016546965,0.0002485955,0.00003054788,0.0005119898,0.0004022176,0.00082336116],"category_scores_gemma":[0.00009890348,0.00020529894,0.00026011045,0.00021997221,0.00020383047,0.0002630651,0.00004779727,0.00072968483,0.00007638657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037636333,0.00022071581,0.00044156116,0.0000038407343,0.0006346613,0.0000067922483,0.0007344317,0.000002037977,0.97640675,0.0000934743,0.0067904606,0.0109016225],"study_design_scores_gemma":[0.0035064158,0.0022796097,0.029982463,0.00024178978,0.00015309962,0.0001256043,0.00038037542,0.0000028746852,0.95818704,0.00016587257,0.0047723097,0.000202528],"about_ca_topic_score_codex":0.0000967626,"about_ca_topic_score_gemma":0.000004126507,"teacher_disagreement_score":0.029540902,"about_ca_system_score_codex":0.0001300592,"about_ca_system_score_gemma":0.00010631314,"threshold_uncertainty_score":0.90152276},"labels":[],"label_agreement":null},{"id":"W2076654194","doi":"10.1155/2014/917149","title":"Antagonizing Arachidonic Acid-Derived Eicosanoids Reduces Inflammatory Th17 and Th1 Cell-Mediated Inflammation and Colitis Severity","year":2014,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; National Cancer Institute; Cooperative State Research, Education, and Extension Service; National Institutes of Health; Cancer Prevention and Research Institute of Texas; U.S. Department of Agriculture","keywords":"Colitis; Arachidonic acid; Eicosanoid; Inflammation; Polyunsaturated fatty acid; Prostaglandin E2; Inflammatory bowel disease; Prostaglandin; Biology; Immunology; Chemistry; Endocrinology; Biochemistry; Fatty acid; Internal medicine; Medicine; Enzyme; Disease","score_opus":0.004714538042795346,"score_gpt":0.20001532267786507,"score_spread":0.19530078463506972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076654194","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958134,0.0018393511,0.00023923644,0.0003991945,0.00049449934,0.000538419,0.000014228947,0.00014793166,0.00051370973],"genre_scores_gemma":[0.9980439,0.0010152397,0.00018285344,0.000027850952,0.0001745239,0.00005830582,0.0003989557,0.000032469685,0.00006592208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997383,0.00065096753,0.0009851968,0.00040271718,0.00015467168,0.00042346586],"domain_scores_gemma":[0.99809086,0.0004803839,0.0007866711,0.00034675718,0.00022473301,0.00007057009],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012622002,0.0003557078,0.00052268157,0.000410269,0.0003242818,0.00005831522,0.00019295969,0.0005040675,0.00007055622],"category_scores_gemma":[0.000887938,0.00034922513,0.00007915083,0.00021093473,0.0004200843,0.00085308007,0.0001399362,0.00035848934,0.00008480024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036097327,0.000018999968,0.0045635425,0.00021387894,0.00006860653,0.0000014289969,0.002544128,0.000007448384,0.9603198,0.0007926554,0.00007468084,0.031033862],"study_design_scores_gemma":[0.0018686275,0.0001658092,0.107237615,0.00011228191,0.00006569435,0.0000234509,0.0005130364,0.00038224002,0.88644195,0.0002784966,0.0025770236,0.0003337913],"about_ca_topic_score_codex":0.00004304327,"about_ca_topic_score_gemma":0.000029645136,"teacher_disagreement_score":0.102674074,"about_ca_system_score_codex":0.00006510346,"about_ca_system_score_gemma":0.00012525282,"threshold_uncertainty_score":0.999896},"labels":[],"label_agreement":null},{"id":"W2076748557","doi":"10.1016/j.cytogfr.2014.02.002","title":"The Lymphotoxin Network: Orchestrating a Type I interferon response to optimize adaptive immunity","year":2014,"lang":"en","type":"review","venue":"Cytokine & Growth Factor Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; National Cancer Institute; National Institute for Health and Care Research","keywords":"Lymphotoxin; Immunology; Biology; Lymphotoxin beta receptor; Acquired immune system; Immune system; Interferon; Chemokine; CD8; T cell; Cell biology; Homeostasis","score_opus":0.06546538685805411,"score_gpt":0.3260525939310803,"score_spread":0.2605872070730262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076748557","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00025513992,0.9937782,0.00032042942,0.00008784919,0.0015266623,0.0034864966,0.000035863868,0.00011454963,0.0003948075],"genre_scores_gemma":[0.00021027273,0.9956247,0.00023517705,0.00015851113,0.00026360966,0.00062784465,0.00030588167,0.000119986486,0.0024539924],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98576164,0.010028607,0.0023465182,0.00072016654,0.00009910487,0.0010439836],"domain_scores_gemma":[0.9934306,0.0031908867,0.0014873963,0.001545869,0.00025545462,0.000089792746],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004923503,0.0010758743,0.0036061704,0.00022442339,0.00083054113,0.0001337066,0.0014554294,0.0008512453,0.0002957989],"category_scores_gemma":[0.004080453,0.0006548695,0.0010643806,0.00083974184,0.00021962507,0.00014717934,0.0005474012,0.0014253367,0.005270566],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028561156,0.00004390535,0.0000018151513,0.0021585093,0.00047580793,0.000005709079,0.00029475024,0.0000013220733,0.0014432911,0.00023278962,0.011556583,0.9809294],"study_design_scores_gemma":[0.00044597502,0.0008912761,0.00001766647,0.011447784,0.00041374995,0.00008444961,0.000023313321,0.0000016170482,0.0002950205,0.000012512364,0.98569965,0.0006669679],"about_ca_topic_score_codex":0.00004201798,"about_ca_topic_score_gemma":0.000011118663,"teacher_disagreement_score":0.98026246,"about_ca_system_score_codex":0.00045142448,"about_ca_system_score_gemma":0.00056984526,"threshold_uncertainty_score":0.9995903},"labels":[],"label_agreement":null},{"id":"W2076849320","doi":"10.1097/01.ccm.0000190622.02222.df","title":"Endotoxin-induced heart dysfunction in rats: Assessment of myocardial perfusion and permeability and the role of fluid resuscitation*","year":2005,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Medicine; Resuscitation; Perfusion; Internal medicine; Cardiology; Shock (circulatory); Septic shock; Ejection fraction; Saline; Sepsis; Troponin; Hemodynamics; Anesthesia; Myocardial infarction; Heart failure","score_opus":0.00920727819752643,"score_gpt":0.28717178891407946,"score_spread":0.27796451071655304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076849320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9879936,0.006328874,0.000025603635,0.0042883297,0.00018917689,0.0002324285,0.000002763173,0.000006203669,0.000933026],"genre_scores_gemma":[0.99968296,0.000084415806,0.000034521785,0.00009297759,0.00005696861,0.000015402997,0.00002083717,0.0000034225336,0.000008463273],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888927,0.00047827506,0.00033250777,0.00013283949,0.000059020243,0.00010806402],"domain_scores_gemma":[0.9988361,0.0008109848,0.00003487929,0.00013586252,0.0001692265,0.000012931346],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008029466,0.00007407264,0.00027049842,0.000075538745,0.00006748926,0.0000023764158,0.000035853333,0.00009956782,0.00006433862],"category_scores_gemma":[0.0011518659,0.000047580354,0.000028444087,0.00007048064,0.00073650194,0.000066301254,0.00003311555,0.00015517481,0.0000013416624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059771514,0.000024067767,0.004750952,0.00005726541,0.000008347227,2.2739577e-7,0.002706047,0.0000010065426,0.9748355,0.004832025,0.000032474825,0.012154355],"study_design_scores_gemma":[0.008024313,0.0011954495,0.29218838,0.00022847195,0.00012884004,0.00003448893,0.025977043,0.00024447293,0.66749567,0.00097551226,0.003378953,0.00012837423],"about_ca_topic_score_codex":0.00012129892,"about_ca_topic_score_gemma":0.000017586324,"teacher_disagreement_score":0.30733982,"about_ca_system_score_codex":0.000030270116,"about_ca_system_score_gemma":0.000044639743,"threshold_uncertainty_score":0.2713672},"labels":[],"label_agreement":null},{"id":"W2076890629","doi":"10.1016/j.ebiom.2014.10.003","title":"An Endotoxin Tolerance Signature Predicts Sepsis and Organ Dysfunction at Initial Clinical Presentation","year":2014,"lang":"en","type":"article","venue":"EBioMedicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":151,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Wellcome Trust","keywords":"Sepsis; Immunology; Organ dysfunction; Medicine; Pathogenesis; Immune system; Reprogramming; Disease; Biology; Internal medicine; Gene; Genetics","score_opus":0.011949440524162155,"score_gpt":0.29957098897590523,"score_spread":0.2876215484517431,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2076890629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943809,0.0007630494,0.0014242185,0.00093451014,0.001469059,0.00024165103,0.0000063598936,0.00009481366,0.0006854674],"genre_scores_gemma":[0.99678266,0.00010485615,0.000056891076,0.0005427648,0.00046845307,0.000013857365,0.00062635547,0.0000133221365,0.0013908102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99858415,0.0005111772,0.00037588476,0.00027493498,0.000056660494,0.00019718538],"domain_scores_gemma":[0.99927944,0.00024055685,0.00013548491,0.00023325499,0.00007194511,0.000039333463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006679151,0.0001329846,0.00023832348,0.000113616414,0.00017052378,0.00000949713,0.00008579197,0.00031327945,0.00048416565],"category_scores_gemma":[0.0002588219,0.000107899396,0.000033416432,0.00011863677,0.00024747904,0.00018370138,0.000036964433,0.00024488042,0.000163302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010442733,0.00008520979,0.006551919,0.00002427695,0.000062272986,0.0000032890825,0.00062204426,0.0000027554981,0.9350569,0.00009900659,0.008624191,0.047823846],"study_design_scores_gemma":[0.009898981,0.002715852,0.28926295,0.00012121721,0.00014047224,0.00014385454,0.00023924201,0.0006743705,0.53595597,0.00017952488,0.1603569,0.0003107065],"about_ca_topic_score_codex":0.000025252064,"about_ca_topic_score_gemma":0.0000127904395,"teacher_disagreement_score":0.39910096,"about_ca_system_score_codex":0.000024126599,"about_ca_system_score_gemma":0.000022029055,"threshold_uncertainty_score":0.53012747},"labels":[],"label_agreement":null},{"id":"W2077137690","doi":"10.1016/j.dci.2003.09.010","title":"Regulation of myeloid development and function by colony stimulating factors","year":2003,"lang":"en","type":"review","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":395,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Haematopoiesis; Colony-stimulating factor; Cell biology; Myelopoiesis; Receptor; Progenitor cell; Macrophage colony-stimulating factor; Myeloid; Immune system; Immunology; Granulocyte macrophage colony-stimulating factor; Cytokine; Stem cell; Macrophage; Genetics; In vitro","score_opus":0.05476115052898377,"score_gpt":0.30103764024766855,"score_spread":0.24627648971868477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077137690","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07200472,0.92521733,0.00019880138,0.0000029526338,0.0006380442,0.0009603975,0.000025229408,0.000055078086,0.0008974252],"genre_scores_gemma":[0.036171686,0.9513807,0.000899827,0.000018803936,0.000012561744,0.00025820025,0.0061101834,0.00007629664,0.0050716973],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964525,0.00092440465,0.0015085766,0.0005762281,0.00008049117,0.00045779572],"domain_scores_gemma":[0.9980669,0.0004745995,0.0010818613,0.00022015968,0.00013297859,0.000023489822],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003830529,0.00068174495,0.0021195891,0.00043501015,0.00039702098,0.000020633473,0.0002273368,0.00082956866,0.0004187081],"category_scores_gemma":[0.000050983246,0.00060076924,0.0001643754,0.0003466065,0.0004113352,0.00018915859,0.00017277543,0.0005475878,0.00030524097],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046776424,0.00031385326,0.0006318763,0.0023020227,0.0053834976,0.0000020485863,0.0063610026,0.0000022011734,0.07028453,0.0012129259,0.0031423946,0.9098959],"study_design_scores_gemma":[0.0007139206,0.00020679824,0.003008184,0.0011569773,0.00022544447,0.000078873374,0.0004830488,5.1951696e-7,0.024696158,0.000019558158,0.9688373,0.0005732132],"about_ca_topic_score_codex":0.000020150863,"about_ca_topic_score_gemma":0.0000068464647,"teacher_disagreement_score":0.9656949,"about_ca_system_score_codex":0.00039078656,"about_ca_system_score_gemma":0.0005584995,"threshold_uncertainty_score":0.9996444},"labels":[],"label_agreement":null},{"id":"W2077581494","doi":"10.1016/j.antiviral.2012.08.012","title":"WFDC1/ps20: A host factor that influences the neutrophil response to murine hepatitis virus (MHV) 1 infection","year":2012,"lang":"en","type":"article","venue":"Antiviral Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Canada Research Chairs; University Health Network","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research","keywords":"CXCL1; Biology; Immunology; Immune system; Microbiology; Virology; Chemokine","score_opus":0.07389450539630842,"score_gpt":0.36413159282337065,"score_spread":0.2902370874270622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077581494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947183,0.0011053149,0.00002530948,0.0021624863,0.00058852055,0.0005501795,0.000018624663,0.00006689637,0.0007643677],"genre_scores_gemma":[0.99387676,0.0009302023,0.000008280564,0.00018743494,0.00013239302,0.00010644112,0.000027615963,0.000021561555,0.0047093215],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99569356,0.002651518,0.0002667932,0.0002587344,0.0002072557,0.000922146],"domain_scores_gemma":[0.99805284,0.0011486076,0.0000718378,0.0004816993,0.00020799892,0.000037014943],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0028720377,0.00018669551,0.00021273262,0.0004357846,0.0007857136,0.000087599954,0.00034363923,0.0002248725,0.00029293646],"category_scores_gemma":[0.0011995261,0.0001284026,0.000102803104,0.00062040973,0.00037061918,0.00061133096,0.00031132766,0.00072082016,0.0054152277],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022297078,0.00008575719,0.074753046,0.000008919401,0.000058338675,0.000004361185,0.0015355865,3.555559e-7,0.9112876,0.00022991777,0.0028160783,0.0069902977],"study_design_scores_gemma":[0.00022008808,0.00029615435,0.47235373,0.000020706295,0.00000469535,0.000011924814,0.00007113722,8.469433e-7,0.43587056,0.000016694743,0.09103885,0.000094616145],"about_ca_topic_score_codex":0.004590111,"about_ca_topic_score_gemma":0.00033915672,"teacher_disagreement_score":0.47541708,"about_ca_system_score_codex":0.000107833956,"about_ca_system_score_gemma":0.0001232742,"threshold_uncertainty_score":0.9953592},"labels":[],"label_agreement":null},{"id":"W2077948592","doi":"10.3389/fimmu.2012.00243","title":"Lymphotoxin-sensitive microenvironments in homeostasis and inflammation","year":2012,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Multiple Sclerosis Society; Multiple Sclerosis Society of Canada","keywords":"Stromal cell; Lymphotoxin; Cell biology; Biology; Inflammation; Immune system; Lymphatic system; Lymphotoxin beta receptor; T cell; Immunology; Lymph node stromal cell; Innate lymphoid cell; Homeostasis; Cancer research; Acquired immune system","score_opus":0.0052910930115369625,"score_gpt":0.19853189526920229,"score_spread":0.19324080225766532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2077948592","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9749013,0.02251465,0.00028107228,0.00025519417,0.0013736055,0.00027769394,0.000003988282,0.000022900704,0.0003695936],"genre_scores_gemma":[0.996136,0.0027118924,0.0006384587,0.000062145744,0.000020560261,0.00004279823,0.00008676238,0.000015644117,0.0002857086],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983736,0.0004513262,0.0003929482,0.0002093037,0.000024682478,0.00054810295],"domain_scores_gemma":[0.9995053,0.00007242819,0.00011827199,0.00027789318,0.000012332384,0.00001379146],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043472275,0.00017767683,0.00032617536,0.00054091326,0.00007121912,0.0000073116635,0.00014421131,0.00036351802,0.00005990027],"category_scores_gemma":[0.00012496446,0.0001874894,0.00003536483,0.00018321285,0.0002781677,0.00035430433,0.0001429106,0.00026887644,0.00018077511],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089007226,0.00012157915,0.16162235,0.0000136625185,0.00015285063,0.000009463465,0.0041989367,0.0000046519017,0.74551135,0.00034141072,0.0010341507,0.08609954],"study_design_scores_gemma":[0.0027010783,0.00007893887,0.5886954,0.00003744492,0.000015696094,0.00009803552,0.0021081092,0.00000981248,0.379566,0.00022145998,0.026223019,0.000245014],"about_ca_topic_score_codex":0.00010288283,"about_ca_topic_score_gemma":0.000013704126,"teacher_disagreement_score":0.42707306,"about_ca_system_score_codex":0.00022226748,"about_ca_system_score_gemma":0.000024399244,"threshold_uncertainty_score":0.76455957},"labels":[],"label_agreement":null},{"id":"W2078167612","doi":"10.1038/nm0210-160","title":"Gut microbes extend reach to systemic innate immunity","year":2010,"lang":"en","type":"letter","venue":"Nature Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Innate immune system; Immunity; Biology; Function (biology); Systemic circulation; Immunology; Microbiology; Immune system; Cell biology; Medicine","score_opus":0.006765774451707825,"score_gpt":0.2565284842901971,"score_spread":0.24976270983848928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078167612","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07815247,0.055840276,0.00004648743,0.8439219,0.015049137,0.0012374605,0.00007219764,0.00029212545,0.005387938],"genre_scores_gemma":[0.115966305,0.00078706513,0.00008431627,0.7964621,0.0064144735,0.000116104486,0.008016406,0.00016078842,0.071992435],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99718827,0.00066941365,0.0007491056,0.0005650777,0.00014739475,0.00068073627],"domain_scores_gemma":[0.9975853,0.00043418747,0.0003794211,0.0012434433,0.00032546112,0.00003216373],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0010236591,0.0005942227,0.0010331525,0.00074712234,0.00025672265,0.000017362585,0.0008958396,0.010405116,0.0012661696],"category_scores_gemma":[0.0009677269,0.00043402225,0.00015575855,0.0003450053,0.00032629495,0.00007893174,0.00019100869,0.02169877,0.0018077318],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010572122,0.000008278492,0.0000040341847,0.00012247293,0.00012042614,0.000058073707,0.00030881877,4.3721993e-8,0.47813517,0.000024118008,0.5189438,0.0021690547],"study_design_scores_gemma":[0.0009918682,0.00024375282,0.00041295745,0.0010983717,0.0001767393,0.0009716417,0.00007620774,1.2352093e-7,0.05424593,0.000046671015,0.94132847,0.0004073001],"about_ca_topic_score_codex":0.00023492784,"about_ca_topic_score_gemma":0.000020222364,"teacher_disagreement_score":0.42388925,"about_ca_system_score_codex":0.00012319793,"about_ca_system_score_gemma":0.0001462124,"threshold_uncertainty_score":0.9998112},"labels":[],"label_agreement":null},{"id":"W2078370139","doi":"10.1016/j.tvjl.2011.12.020","title":"Immunophenotypic evaluation of working Labrador Retrievers and German Shepherd dogs living in the same environment","year":2012,"lang":"en","type":"article","venue":"The Veterinary Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Ministerio de Ciencia e Innovación","keywords":"Breed; Lymphocyte subsets; Peripheral blood; CD8; Lymphocyte; Labrador Retriever; Flow cytometry; CD3; Immune system; Biology; Distribution (mathematics); Peripheral blood lymphocyte; Immunology; Animal science; Medicine; Pathology","score_opus":0.05180916397271421,"score_gpt":0.2798670787309388,"score_spread":0.2280579147582246,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078370139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98772216,0.01135595,0.000023121971,0.00027601246,0.00029752427,0.00014480231,3.307006e-7,0.0000033402252,0.00017676472],"genre_scores_gemma":[0.9992419,0.0005402753,0.00002282121,0.000053282933,0.000054381064,0.0000064505903,0.000002056995,0.0000060972056,0.00007271855],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979306,0.0014586174,0.00026259685,0.000057337733,0.00008706583,0.00020380392],"domain_scores_gemma":[0.9993485,0.000276952,0.00017941752,0.00017153446,0.000015815514,0.000007749234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0046052504,0.00008394387,0.00010844735,0.00006465114,0.00023313059,0.000017510687,0.0001765023,0.000070288566,0.0003355182],"category_scores_gemma":[0.00006909348,0.000049410388,0.00003885457,0.00006778714,0.00010977099,0.00018844352,0.00006932283,0.0003263404,0.000033052882],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007054367,0.00011842447,0.0082846815,0.000011307002,0.00013478052,0.000003654436,0.036455803,0.000039633254,0.82791066,0.00017982202,0.000120466386,0.1260353],"study_design_scores_gemma":[0.001112631,0.00048614107,0.97633684,0.00018076513,0.00012827646,0.0021053578,0.0038084472,0.000051500938,0.005295246,0.00030069213,0.010041288,0.00015280567],"about_ca_topic_score_codex":0.000018123286,"about_ca_topic_score_gemma":6.38614e-7,"teacher_disagreement_score":0.96805215,"about_ca_system_score_codex":0.00005770976,"about_ca_system_score_gemma":0.000021522446,"threshold_uncertainty_score":0.36736894},"labels":[],"label_agreement":null},{"id":"W2078395832","doi":"10.1016/j.dci.2010.02.006","title":"Differential gene expression of γ-actin, Toll-like receptor 2 (TLR-2) and interleukin-1 receptor-associated kinase 4 (IRAK-4) in Mya arenaria haemocytes induced by in vivo infections with two Vibrio splendidus strains","year":2010,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Immune system; Microbiology; Housekeeping gene; Gene; Receptor; In vivo; Gene expression; Molecular biology; Interleukin 10; Immunology; Genetics","score_opus":0.01436681315296253,"score_gpt":0.25370153548614405,"score_spread":0.2393347223331815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078395832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977079,0.00027410133,0.00005227768,0.000062884465,0.00096648966,0.00055231625,0.00007013496,0.00005148104,0.0002624071],"genre_scores_gemma":[0.9984047,0.00007064001,0.00031486605,0.000020725061,0.000010775647,0.00012208246,0.00072489603,0.000024312967,0.000307015],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99751055,0.0006149659,0.0008051181,0.00048843387,0.00006985507,0.00051108224],"domain_scores_gemma":[0.99899364,0.000231274,0.00042370177,0.00021206427,0.00010821873,0.000031091666],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022038397,0.00040721314,0.0007760481,0.0005128462,0.0002071137,0.00002655592,0.00024359192,0.0004527455,0.0013252948],"category_scores_gemma":[0.00008045424,0.0003703321,0.000055608496,0.00037016638,0.00048434507,0.00030993167,0.00020934553,0.0009562468,0.000056671357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016568378,0.0005994211,0.020191438,0.000008053292,0.00022607033,0.0000044287303,0.005281555,0.0000011580341,0.9706864,0.00008185629,0.0004157615,0.00084704906],"study_design_scores_gemma":[0.0052875695,0.00070259103,0.07118913,0.00014279773,0.000014471235,0.000066407214,0.001879526,0.000004389159,0.9177696,0.000014606302,0.0025460718,0.0003828442],"about_ca_topic_score_codex":0.00081887393,"about_ca_topic_score_gemma":0.003053244,"teacher_disagreement_score":0.052916773,"about_ca_system_score_codex":0.00024010814,"about_ca_system_score_gemma":0.0002312099,"threshold_uncertainty_score":0.9998749},"labels":[],"label_agreement":null},{"id":"W2078402906","doi":"10.1016/j.cellimm.2004.01.004","title":"CpG oligodeoxynucleotide induction of antiviral effector molecules in sheep","year":2004,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"CpG Oligodeoxynucleotide; Biology; In vivo; CpG site; Effector; Peripheral blood mononuclear cell; Interferon; Immunology; Molecular biology; In vitro; Biochemistry; Gene expression","score_opus":0.005782922028143605,"score_gpt":0.20351073150225393,"score_spread":0.19772780947411034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078402906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99430066,0.0015204393,0.0008177312,0.00017088206,0.000702371,0.0012276452,0.0000033744896,0.000053843483,0.0012030555],"genre_scores_gemma":[0.99914443,0.00005205957,0.00010861157,0.000025360174,0.000017757704,0.00032767936,0.00009695725,0.000021010808,0.00020612823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984568,0.00036989327,0.000506226,0.00025972564,0.000032483524,0.000374916],"domain_scores_gemma":[0.9993288,0.000067125286,0.00019537668,0.00035814874,0.000043240234,0.0000073345723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000299366,0.00019452172,0.000383555,0.00038050182,0.00007102228,0.0000057913926,0.00022953433,0.00042195444,0.00025809635],"category_scores_gemma":[0.00010253525,0.00019013953,0.00011614465,0.00026151465,0.00033823427,0.000156682,0.00008928281,0.0003282245,0.0006030936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004809767,0.00015161898,0.00052350113,0.000025131469,0.00010277094,0.000017564213,0.00032978013,0.00006472265,0.98763657,0.0057441373,0.000030365363,0.004892879],"study_design_scores_gemma":[0.0031389212,0.00031680797,0.01857258,0.00004339368,0.000018499273,0.000043809425,0.00012723658,0.0000027964302,0.9717285,0.0008551449,0.0049790456,0.00017327267],"about_ca_topic_score_codex":0.0002852982,"about_ca_topic_score_gemma":0.00002266952,"teacher_disagreement_score":0.018049078,"about_ca_system_score_codex":0.00008680358,"about_ca_system_score_gemma":0.00008239153,"threshold_uncertainty_score":0.7753665},"labels":[],"label_agreement":null},{"id":"W2078468171","doi":"10.1097/00024382-200116050-00007","title":"ANTIOXIDANTS INCREASE LIPOPOLYSACCHARIDE-STIMULATED TNFα RELEASE IN MURINE MACROPHAGES: ROLE FOR ALTERED TNFα mRNA STABILITY","year":2001,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital; University of Toronto; Toronto General Hospital","funders":"","keywords":"Pyrrolidine dithiocarbamate; Tumor necrosis factor alpha; Molecular biology; Proinflammatory cytokine; Cytokine; NFKB1; Chemistry; Gene expression; Biology; Cell biology; NF-κB; Inflammation; Transcription factor; Immunology; Signal transduction; Biochemistry; Gene","score_opus":0.014372259689242701,"score_gpt":0.25125526385118185,"score_spread":0.23688300416193916,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078468171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962561,0.0016127327,0.00031000143,0.00021198513,0.00039266853,0.0007200573,0.00004688794,0.00011317872,0.00033636033],"genre_scores_gemma":[0.9976715,0.0001791847,0.00010978254,0.00012701703,0.00006014441,0.00004769908,0.00026939,0.000028337638,0.0015069308],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980877,0.0003113229,0.0005957924,0.00040753698,0.00004719983,0.00055044144],"domain_scores_gemma":[0.99896497,0.00023167637,0.00015406377,0.0004900775,0.00011735665,0.000041846182],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00053210836,0.00024451315,0.0003788317,0.00020621918,0.0001666346,0.000021376374,0.00023499713,0.00028433176,0.001095353],"category_scores_gemma":[0.0004885146,0.00023482401,0.00013332514,0.00020791596,0.000098589684,0.0002252605,0.0000865148,0.00028134792,0.00043243007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004410049,0.00027444543,0.0072635864,0.000039907412,0.00007985809,0.000024688323,0.000326468,0.00005027005,0.9728517,0.00008394214,0.0004652742,0.014129805],"study_design_scores_gemma":[0.006373783,0.00040788905,0.035781823,0.000087161316,0.000057819634,0.00008646969,0.0003301112,0.0012128914,0.94027674,0.00075735804,0.014187422,0.00044051866],"about_ca_topic_score_codex":0.0011148275,"about_ca_topic_score_gemma":0.00025130218,"teacher_disagreement_score":0.032574955,"about_ca_system_score_codex":0.00010461603,"about_ca_system_score_gemma":0.00011027086,"threshold_uncertainty_score":0.9998178},"labels":[],"label_agreement":null},{"id":"W2078619682","doi":"10.1016/j.dci.2008.10.001","title":"Identification of an Atlantic salmon IFN multigene cluster encoding three IFN subtypes with very different expression properties","year":2008,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":159,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Beijing Institute of Genomics, Chinese Academy of Sciences; Genome Atlantic; Norges Forskningsråd","keywords":"Biology; Gene; Interferon; MDA5; Promoter; Gene cluster; Molecular biology; Interferon-stimulated gene; Downregulation and upregulation; Gene expression; Genetics; RNA; RNA interference; Receptor; Innate immune system","score_opus":0.03446322840242523,"score_gpt":0.24470739664359706,"score_spread":0.2102441682411718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078619682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996941,0.0013369219,0.000600798,0.00003576147,0.0003274987,0.0005214444,0.0000043770415,0.00007197576,0.00016024588],"genre_scores_gemma":[0.99872,0.00010982724,0.00029708026,0.00001838084,0.000013266629,0.00009276736,0.00028185084,0.000019178751,0.00044768388],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99805874,0.00042762663,0.0006892728,0.00038421317,0.00008437814,0.0003557843],"domain_scores_gemma":[0.99904686,0.000105183884,0.0003872086,0.0002796626,0.00016239846,0.00001869087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001711662,0.00031014954,0.0005313238,0.00024234495,0.0004467089,0.000014123932,0.0002993335,0.00021619658,0.00012102773],"category_scores_gemma":[0.000027053438,0.00022555927,0.000060924107,0.00014885703,0.0006044824,0.0004055582,0.0001383536,0.0002604466,0.00022276492],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028818606,0.00026615386,0.01625295,0.000020117852,0.00026331886,0.0000062809704,0.006732281,0.000023998131,0.97280127,0.00004845434,0.000049783215,0.0006535351],"study_design_scores_gemma":[0.0012619711,0.00030849964,0.2967365,0.00008312526,0.0000171506,0.00020610467,0.0010745163,0.000050433006,0.6997238,0.000010875185,0.00031255913,0.00021446802],"about_ca_topic_score_codex":0.0001209634,"about_ca_topic_score_gemma":0.00016648792,"teacher_disagreement_score":0.28048354,"about_ca_system_score_codex":0.00013309806,"about_ca_system_score_gemma":0.00013014545,"threshold_uncertainty_score":0.919804},"labels":[],"label_agreement":null},{"id":"W2078950997","doi":"10.1038/gene.2014.22","title":"An ENU-induced splicing mutation reveals a role for Unc93b1 in early immune cell activation following influenza A H1N1 infection","year":2014,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Innate immune system; Immune system; Immunology; Virology","score_opus":0.013525191294908291,"score_gpt":0.26142336716826303,"score_spread":0.24789817587335475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2078950997","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99643755,0.00060365075,0.002040796,0.00002785569,0.00023167489,0.00047946183,0.0000017670881,0.000053645566,0.00012362361],"genre_scores_gemma":[0.99943,0.00004039297,0.00010318599,0.00006928143,0.000033907727,0.00008652356,0.00014393758,0.000019419604,0.00007336147],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985768,0.00050426804,0.00040403026,0.0002078118,0.00003300306,0.00027404202],"domain_scores_gemma":[0.9992379,0.00018988429,0.00019705121,0.00028036593,0.00007830616,0.000016480239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010659909,0.0001681167,0.00025743432,0.00022551563,0.00040422505,0.000050578215,0.00009403106,0.00025616935,0.000008621423],"category_scores_gemma":[0.00015026324,0.00016992594,0.000085006424,0.00017186174,0.000024481771,0.0005902774,0.000037617956,0.00021943609,0.000016921755],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003094959,0.00006672552,0.007821572,0.000030968677,0.00002804836,1.3786659e-7,0.0019702637,0.000054116597,0.9490081,0.0001427573,0.0000022772347,0.04056552],"study_design_scores_gemma":[0.0018220027,0.0005122219,0.29950044,0.000058469384,0.00002808749,0.000004521892,0.00044419552,0.00032783716,0.69567424,0.0004437908,0.0010020825,0.00018213969],"about_ca_topic_score_codex":0.003224354,"about_ca_topic_score_gemma":0.000055311866,"teacher_disagreement_score":0.29167885,"about_ca_system_score_codex":0.00005352535,"about_ca_system_score_gemma":0.000032751133,"threshold_uncertainty_score":0.69293785},"labels":[],"label_agreement":null},{"id":"W2079267013","doi":"10.1073/pnas.1100702108","title":"A subclass of acylated anti-inflammatory mediators usurp Toll-like receptor 2 to inhibit neutrophil recruitment through peroxisome proliferator-activated receptor γ","year":2011,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Ministério da Educação; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale; Canadian Institutes of Health Research; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Alberta Cancer Foundation","keywords":"TLR2; Lipoteichoic acid; Receptor; Toll-like receptor; Proinflammatory cytokine; Biology; Innate immune system; Pattern recognition receptor; Inflammation; Cell biology; Immune system; Lipopeptide; Immunology; Biochemistry; Staphylococcus aureus","score_opus":0.06645854363851982,"score_gpt":0.2888571792488389,"score_spread":0.22239863561031908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079267013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964868,0.00024716274,4.4622792e-7,0.001229724,0.00018026782,0.00078203075,0.000029298511,0.000030275496,0.0010140165],"genre_scores_gemma":[0.9988841,0.00009915044,0.00044244758,0.00016780914,0.000037555674,0.000069348556,0.0000024638928,0.000011134488,0.00028603023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99808097,0.000060236023,0.0008122238,0.00034581588,0.00040130917,0.00029945254],"domain_scores_gemma":[0.9983511,0.00011210156,0.0008993508,0.000028982045,0.00057914166,0.00002932476],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013501345,0.00020174746,0.00038336436,0.00031004037,0.000237456,0.000010749439,0.00081193366,0.00030092231,0.00020183068],"category_scores_gemma":[0.00050866173,0.00014220951,0.00013208653,0.00095132634,0.00089626014,0.00072187197,0.0002047231,0.00028059864,0.000038156606],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039783216,0.00010975533,0.0036674987,0.000059185117,0.000089568835,9.430421e-9,0.002292721,0.0000035701264,0.9865289,0.0047044028,0.0019939716,0.00015262447],"study_design_scores_gemma":[0.00050351396,0.00024652615,0.021640712,0.00016429863,0.000019400708,0.000006592783,0.00046173335,0.0000029432906,0.97221476,0.0008676837,0.0037226551,0.00014917157],"about_ca_topic_score_codex":0.000015955988,"about_ca_topic_score_gemma":1.1238421e-7,"teacher_disagreement_score":0.017973214,"about_ca_system_score_codex":0.000081047874,"about_ca_system_score_gemma":0.00013148897,"threshold_uncertainty_score":0.57991356},"labels":[],"label_agreement":null},{"id":"W2079724632","doi":"10.1097/inf.0b013e318157ad01","title":"Staphylococcal Pericarditis, and Liver and Paratracheal Abscesses as Presentations in Two New Cases of Interleukin-1 Receptor Associated Kinase 4 Deficiency","year":2008,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Pericarditis; Medicine; Internal medicine; Cardiology; Gastroenterology","score_opus":0.01191915802010983,"score_gpt":0.26138130552965766,"score_spread":0.24946214750954782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079724632","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9856135,0.01367367,0.000039438677,0.00010900144,0.0002185527,0.00017644036,0.000017382792,0.000016911385,0.00013506683],"genre_scores_gemma":[0.9906303,0.0090287365,0.0000058771957,0.000028188642,0.00012046797,0.000007974847,0.000012441416,0.0000084783505,0.00015748106],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99879223,0.00045869435,0.00034350535,0.0001254814,0.00006147971,0.00021861673],"domain_scores_gemma":[0.99901664,0.00049185933,0.00023659362,0.00009505088,0.00009431113,0.000065555665],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027078277,0.00012613962,0.00018958306,0.00021774096,0.0004028862,0.000026283427,0.0000806881,0.000059089107,0.0001857363],"category_scores_gemma":[0.00063909235,0.00009580337,0.0000703093,0.00023941252,0.00019508404,0.00019265892,0.00004638702,0.00032945126,0.000024105948],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005626622,0.00031296237,0.9872781,0.00003255232,0.00007221117,0.00012725047,0.002885846,0.0000878803,0.0038749103,0.000098168304,0.0029928912,0.0016745846],"study_design_scores_gemma":[0.002635331,0.0003710945,0.9920428,0.000019825613,0.0002499195,0.002437324,0.0005235057,0.00001600696,0.00086089346,0.00037139156,0.0002802941,0.0001916184],"about_ca_topic_score_codex":0.00084169215,"about_ca_topic_score_gemma":0.00005794565,"teacher_disagreement_score":0.005016818,"about_ca_system_score_codex":0.000044912205,"about_ca_system_score_gemma":0.000394867,"threshold_uncertainty_score":0.3906748},"labels":[],"label_agreement":null},{"id":"W2079780498","doi":"10.1016/j.immuni.2006.04.012","title":"Bacterial Superantigens Bypass Lck-Dependent T Cell Receptor Signaling by Activating a Gα11-Dependent, PLC-β-Mediated Pathway","year":2006,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Robarts Clinical Trials; Western University","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases","keywords":"Biology; Superantigen; T-cell receptor; Cell biology; Signal transduction; MAPK/ERK pathway; ZAP70; Heterotrimeric G protein; T cell; Phosphorylation; G protein; Immunology; Immune system","score_opus":0.007559912364664269,"score_gpt":0.2010912754486004,"score_spread":0.19353136308393612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079780498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951187,0.0012499195,0.000097621,0.000102882834,0.0009766364,0.00037708413,0.00012331361,0.00013920091,0.0018146654],"genre_scores_gemma":[0.9945714,0.00006904612,0.000045609147,0.000043307788,0.0000838466,0.000040320432,0.0021173928,0.000041170664,0.002987906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997064,0.0011019334,0.0007352031,0.0003409078,0.00009586363,0.000662079],"domain_scores_gemma":[0.9987321,0.00044754858,0.0002605938,0.0004353139,0.00010042663,0.000024033381],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00090967614,0.00032497608,0.00041550427,0.00020435889,0.00041819923,0.000064890824,0.00037777575,0.000485759,0.0019403148],"category_scores_gemma":[0.00016839687,0.00032685185,0.00011973217,0.00022309543,0.00010535029,0.00035703453,0.00013603973,0.0008250308,0.0009919208],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060889905,0.00033924784,0.0011601825,0.000019776073,0.000047893136,0.000006476458,0.00060589914,0.000017990571,0.99512976,0.000022457365,0.0010777826,0.00096362684],"study_design_scores_gemma":[0.0030222256,0.00011882932,0.0020407897,0.0000487371,0.0000118809985,0.0000136595845,0.00059159356,0.000007287462,0.97512704,0.000024652709,0.018632134,0.00036118084],"about_ca_topic_score_codex":0.0038501227,"about_ca_topic_score_gemma":0.00016371599,"teacher_disagreement_score":0.020002741,"about_ca_system_score_codex":0.00017363219,"about_ca_system_score_gemma":0.00014819721,"threshold_uncertainty_score":0.99991834},"labels":[],"label_agreement":null},{"id":"W2079915560","doi":"10.1007/s00134-011-2236-y","title":"Effects of esmolol on systemic and pulmonary hemodynamics and on oxygenation in pigs with hypodynamic endotoxin shock","year":2011,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Société de Réanimation de Langue Française; Heart and Stroke Foundation of Canada","keywords":"Medicine; Esmolol; Shock (circulatory); Anesthesiology; Hemodynamics; Oxygenation; Anesthesia; Pain medicine; Pulmonary hypertension; Cardiology; Internal medicine; Heart rate; Blood pressure","score_opus":0.006626398432509612,"score_gpt":0.2052510131829033,"score_spread":0.1986246147503937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079915560","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9945817,0.0040173954,0.000046758538,0.00017509227,0.0001802604,0.00048247393,0.0000032657963,0.000016784876,0.0004962562],"genre_scores_gemma":[0.99919325,0.0002793997,0.0000067461383,0.0003387944,0.000009736864,0.00002737733,0.00005932205,0.000012718002,0.00007266503],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99922067,0.00014918252,0.00023527109,0.0002078281,0.000042639145,0.00014440263],"domain_scores_gemma":[0.9990037,0.00031491206,0.00012356127,0.0001365454,0.0004070328,0.000014222493],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010652001,0.00015647252,0.00032524604,0.0002860444,0.000032965672,0.0000013749793,0.000056270266,0.00014714441,0.000007989693],"category_scores_gemma":[0.0004194655,0.000108646724,0.000016383889,0.00008729334,0.00024707633,0.000041924715,0.000024153855,0.00020611941,0.000007246289],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032041706,0.000036472095,0.008559408,0.00043157773,0.0000846363,0.00014387877,0.0071797976,0.000003831691,0.97359395,0.0009997168,0.0000353099,0.005727223],"study_design_scores_gemma":[0.0074085025,0.008093767,0.5483542,0.006683786,0.0001697487,0.001323044,0.025172342,0.00025672145,0.40187973,0.00019917337,0.0000711672,0.00038779128],"about_ca_topic_score_codex":0.00015776308,"about_ca_topic_score_gemma":0.000015599304,"teacher_disagreement_score":0.5717142,"about_ca_system_score_codex":0.00006019654,"about_ca_system_score_gemma":0.000020659196,"threshold_uncertainty_score":0.44304848},"labels":[],"label_agreement":null},{"id":"W2079941677","doi":"10.1186/cc7702","title":"Bench-to-bedside review: Association of genetic variation with sepsis","year":2009,"lang":"en","type":"review","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto","funders":"Michael Smith Health Research BC; Heart and Stroke Foundation of Canada","keywords":"Single-nucleotide polymorphism; Genetic association; Genome-wide association study; Genetics; Genetic variation; Candidate gene; Copy-number variation; Nonsynonymous substitution; Genotype; Epigenetics; Medicine; Disease; Biology; Genetic predisposition; Genome; Allele; Gene; Bioinformatics","score_opus":0.01740152430253262,"score_gpt":0.3181751916984321,"score_spread":0.3007736673958995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2079941677","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000013546053,0.9976832,0.00017663276,0.00034227304,0.00022673147,0.0007122161,0.000051630686,0.000032180764,0.0007615418],"genre_scores_gemma":[0.00016370139,0.99803644,0.00023669215,0.0003104705,0.000047901936,0.000087956425,0.00061868865,0.000023946957,0.00047418114],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979465,0.0006525865,0.00071839255,0.00029751033,0.0000925876,0.00029241393],"domain_scores_gemma":[0.9983095,0.0005127235,0.0002763151,0.0003603483,0.00051448727,0.000026650048],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027457852,0.00027077214,0.0012470987,0.00015967278,0.0000808092,0.000012736577,0.00018961012,0.0005636262,0.0002825223],"category_scores_gemma":[0.001426789,0.00021248304,0.00027839397,0.0003004313,0.000041381798,0.00006012013,0.000036459864,0.00033978568,0.000498258],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024462093,0.000039875456,0.00000803816,0.03765906,0.00017716762,0.0000047066296,0.00020448188,4.3954185e-7,0.00009438404,0.0003868959,0.0058346484,0.9555658],"study_design_scores_gemma":[0.0001471542,0.00035680895,0.0002497428,0.025018854,0.0020418689,0.00002288661,0.000025828373,6.7457314e-8,0.0000924288,0.000020436584,0.9717726,0.00025129243],"about_ca_topic_score_codex":0.000010340213,"about_ca_topic_score_gemma":0.000003967457,"teacher_disagreement_score":0.965938,"about_ca_system_score_codex":0.00026762133,"about_ca_system_score_gemma":0.00025512808,"threshold_uncertainty_score":0.86648065},"labels":[],"label_agreement":null},{"id":"W2080402548","doi":"10.1016/s0140-6736(04)16253-3","title":"Role of toll-like receptor 4 in protection by bacterial lipopolysaccharide in the nasal mucosa of atopic children but not adults","year":2004,"lang":"en","type":"article","venue":"The Lancet","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; Montreal Children's Hospital; McGill University Health Centre; Hôpital Notre-Dame","funders":"Canadian Institutes of Health Research; Health Canada; Canadian Lung Association","keywords":"Lipopolysaccharide; TLR4; Immunology; Cytokine; Allergic inflammation; Mucous membrane of nose; Toll-like receptor; Medicine; Inflammation; Interleukin; Receptor; Immune system; Innate immune system; Internal medicine","score_opus":0.007630489497749465,"score_gpt":0.20937804939274166,"score_spread":0.20174755989499218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080402548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981739,0.0002998032,0.0000060196426,0.00086195505,0.00016855272,0.00039238413,0.0000294959,0.000009647419,0.00005822364],"genre_scores_gemma":[0.9996238,0.00007896586,0.000008900434,0.000067599954,0.00007693757,0.0000357144,0.000059722577,0.0000045576976,0.000043835546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991905,0.00027633822,0.00025720903,0.00009163207,0.000031508393,0.0001528236],"domain_scores_gemma":[0.9995713,0.000040678755,0.00012718525,0.00024189649,0.00001634121,0.000002569899],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040571598,0.000074075746,0.00021699799,0.000046582256,0.000035544257,0.00000428105,0.00024743535,0.00011496692,0.00005586054],"category_scores_gemma":[0.000054875243,0.000045973615,0.000034959674,0.00008191284,0.00007583103,0.00005912133,0.000028293849,0.0002031195,0.000031638112],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018250751,0.00006099222,0.00095870614,0.000008958966,0.000021092612,1.1935758e-7,0.0021877857,0.000005969974,0.9911341,0.00029821118,0.00014584018,0.0033531582],"study_design_scores_gemma":[0.0027543143,0.00014169353,0.06587119,0.000062490595,0.00000553899,0.000010386439,0.00032687077,0.0000014256916,0.92942506,0.00014600714,0.0012005797,0.000054462318],"about_ca_topic_score_codex":0.0021222746,"about_ca_topic_score_gemma":0.00021894884,"teacher_disagreement_score":0.064912476,"about_ca_system_score_codex":0.00002230286,"about_ca_system_score_gemma":0.000032062588,"threshold_uncertainty_score":0.32082585},"labels":[],"label_agreement":null},{"id":"W2080630776","doi":"10.1371/journal.pone.0043381","title":"Characterization of Chicken Thrombocyte Responses to Toll-Like Receptor Ligands","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":125,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Poultry Industry Council","keywords":"Platelet; TLR4; Receptor; Platelet activation; Toll-like receptor; TLR9; Cell biology; Biology; Immunology; Innate immune system; Toll-Like Receptor 9; Lipopolysaccharide; Stimulation; CpG Oligodeoxynucleotide; Immune system; Protease-activated receptor; Pattern recognition receptor; Chemistry; Gene expression; Gene; Biochemistry; Endocrinology; Thrombin","score_opus":0.03196391991225422,"score_gpt":0.23195871921738304,"score_spread":0.1999947993051288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080630776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9982198,0.000330333,0.000041923613,0.00044473994,0.00027775663,0.00027468012,0.000024689327,0.000053603686,0.00033247494],"genre_scores_gemma":[0.99278253,0.00014139822,0.00014613291,0.0001645172,0.00007670472,0.00003202549,0.00025496897,0.000015482457,0.006386217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915427,0.00014171531,0.0002815284,0.00011501312,0.00005157788,0.00025589642],"domain_scores_gemma":[0.9994445,0.00007940018,0.000121497476,0.00024397888,0.00008649393,0.00002413214],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032655333,0.000107343185,0.00025966435,0.0001453383,0.00008146657,0.000006399619,0.0001164365,0.00015761735,0.0007182592],"category_scores_gemma":[0.00016976666,0.00010042836,0.000041993175,0.00014343321,0.000045673863,0.00022925694,0.000054991448,0.000104834784,0.001585385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009473573,0.00048783104,0.0038304175,0.000029276445,0.00019632393,1.0141534e-7,0.001480566,3.369271e-8,0.99211067,0.00013616227,0.00020397421,0.0005772907],"study_design_scores_gemma":[0.00033658504,0.00019113274,0.06682096,0.00009731868,0.000053810352,0.0000024100896,0.000047488356,4.4951386e-7,0.92557836,0.00000295447,0.00676015,0.000108378634],"about_ca_topic_score_codex":0.0000068383783,"about_ca_topic_score_gemma":6.913228e-7,"teacher_disagreement_score":0.0665323,"about_ca_system_score_codex":0.000025325451,"about_ca_system_score_gemma":0.000033464523,"threshold_uncertainty_score":0.999192},"labels":[],"label_agreement":null},{"id":"W2080815766","doi":"10.1016/j.jconrel.2004.02.022","title":"Strategies for enhancing the immunostimulatory effects of CpG oligodeoxynucleotides","year":2004,"lang":"en","type":"review","venue":"Journal of Controlled Release","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":208,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; Immune system; CpG site; In vivo; Immunology; TLR9; Biology; Acquired immune system; Cytokine; Innate immune system; Downregulation and upregulation; Cancer research; Gene expression; Biochemistry","score_opus":0.009935497584589966,"score_gpt":0.28150205745556006,"score_spread":0.2715665598709701,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080815766","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00053205265,0.99456954,0.001644944,0.000039157723,0.0014071577,0.0016991489,0.000006323721,0.00001049569,0.000091173555],"genre_scores_gemma":[0.015445679,0.983797,0.000034746918,0.00002409625,0.00015269368,0.000097954995,0.000012696184,0.00004226931,0.0003928435],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964344,0.000899671,0.0021380757,0.00013953798,0.00008624595,0.00030206155],"domain_scores_gemma":[0.9909121,0.004926313,0.0033811429,0.00033936359,0.00041799745,0.000023080383],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013991132,0.00038895375,0.003158991,0.00034715305,0.00018309633,0.00003777636,0.0005004428,0.0004965147,0.000041221432],"category_scores_gemma":[0.0015035667,0.00020805722,0.0021719907,0.00012792861,0.0001771215,0.00019494834,0.000038282258,0.000767323,0.00003166249],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.013576209,0.00051269744,2.2836964e-7,0.05208571,0.016094642,0.00009206984,0.0008553231,0.0004375938,0.041964665,0.010252628,0.0018908082,0.86223745],"study_design_scores_gemma":[0.025255138,0.0015764427,0.000003389998,0.04130306,0.008749211,0.0005413822,0.00031917958,0.000003984958,0.0072305705,0.0010427254,0.9135555,0.0004194225],"about_ca_topic_score_codex":0.000007585776,"about_ca_topic_score_gemma":0.0000015344584,"teacher_disagreement_score":0.91166466,"about_ca_system_score_codex":0.000113938695,"about_ca_system_score_gemma":0.0020997515,"threshold_uncertainty_score":0.8484327},"labels":[],"label_agreement":null},{"id":"W2080842773","doi":"10.1097/01.ccm.0000104919.07538.04","title":"N,N′,N′-triacetylglucosamine, an inhibitor of lysozyme, prevents myocardial depression in Escherichia coli sepsis in dogs*","year":2004,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Sepsis; Medicine; Septic shock; Pharmacology; Lysozyme; In vivo; Shock (circulatory); Internal medicine; Biochemistry; Chemistry; Biology","score_opus":0.012354015585152513,"score_gpt":0.2935149372802854,"score_spread":0.28116092169513285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2080842773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99187595,0.0055567552,0.00011559931,0.0006378124,0.00075768976,0.00030036375,0.000006997732,0.000025039919,0.0007237983],"genre_scores_gemma":[0.9993466,0.00006763844,0.000096064134,0.00014865168,0.00010263383,0.000033929125,0.00015661278,0.000014911612,0.000032951244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983258,0.00038939985,0.00058861513,0.00027460564,0.00009089512,0.0003306651],"domain_scores_gemma":[0.9992789,0.00023717896,0.000057380163,0.00026960392,0.000116761774,0.00004019013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042176273,0.00016998017,0.00049049506,0.00026030096,0.000046274934,0.0000035464923,0.0001524227,0.00032812636,0.00015413763],"category_scores_gemma":[0.0011836153,0.00014170878,0.00006058363,0.0003226011,0.0003391356,0.00016146021,0.000057967358,0.00035440113,0.000027781653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010060902,0.00025239447,0.016173987,0.00015952467,0.000019152829,0.000034430148,0.0035842166,0.000026688605,0.973515,0.00084793026,0.00012159489,0.004259024],"study_design_scores_gemma":[0.014211436,0.0016185299,0.20031236,0.0013484135,0.00010156139,0.00002286199,0.0063149915,0.000008399765,0.7733827,0.0006982576,0.001633693,0.0003467513],"about_ca_topic_score_codex":0.00053479854,"about_ca_topic_score_gemma":0.000114584655,"teacher_disagreement_score":0.20013222,"about_ca_system_score_codex":0.000111811794,"about_ca_system_score_gemma":0.00010864592,"threshold_uncertainty_score":0.5778716},"labels":[],"label_agreement":null},{"id":"W2081065852","doi":"10.1155/2013/636847","title":"CpG ODN and ISCOMATRIX Adjuvant: A Synergistic Adjuvant Combination Inducing Strong T-Cell IFN-<mml:math xmlns:mml=\"http://www.w3.org/1998/Math/MathML\" id=\"M1\"><mml:mrow><mml:mi>γ</mml:mi></mml:mrow></mml:math>Responses","year":2013,"lang":"en","type":"article","venue":"BioMed Research International","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada); Terry Fox Research Institute","funders":"","keywords":"Adjuvant; Antigen; CpG Oligodeoxynucleotide; Immune system; Ovalbumin; TLR9; Immunology; Chemistry; Biology; Biochemistry; Gene","score_opus":0.027872788460689777,"score_gpt":0.28433147099161993,"score_spread":0.2564586825309301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081065852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9785819,0.0009961476,0.00023317343,0.00083148514,0.0011153667,0.000057787573,0.00005869044,0.000056338118,0.018069103],"genre_scores_gemma":[0.9965603,0.00028015714,0.0001549572,0.00008523897,0.00021769704,0.0003242989,0.00065215473,0.000054134816,0.0016711078],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99766445,0.00039414738,0.00048511557,0.00040536182,0.00045155166,0.0005993512],"domain_scores_gemma":[0.9981177,0.00093196234,0.00028984642,0.0003815941,0.00018606341,0.000092840426],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011888632,0.00017779176,0.00011584384,0.00049984717,0.0005053984,0.00028237188,0.00051286543,0.00047512952,0.00923867],"category_scores_gemma":[0.0010898107,0.00023102121,0.00015344024,0.00024537384,0.00057490147,0.0005418416,0.0005192797,0.00057453895,0.0022136255],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007755541,0.00015332334,0.000019260455,0.00012162016,0.00031804552,0.000076560216,0.00074078277,0.000018068497,0.26610756,0.7067321,0.021158352,0.0037787685],"study_design_scores_gemma":[0.001963504,0.00085885107,0.002308188,0.00036519492,0.00007125878,0.0003091523,0.0015921455,0.046369288,0.9347927,0.0002424035,0.010769375,0.00035793928],"about_ca_topic_score_codex":0.00075504114,"about_ca_topic_score_gemma":0.00005060107,"teacher_disagreement_score":0.7064897,"about_ca_system_score_codex":0.000025408506,"about_ca_system_score_gemma":0.00039766595,"threshold_uncertainty_score":0.9985633},"labels":[],"label_agreement":null},{"id":"W2081164937","doi":"10.1016/j.femsim.2004.12.005","title":"Biological importance of the two Toll-like receptors, TLR2 and TLR4, in macrophage response to infection with<i>Candida albicans</i>","year":2005,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Ministero dell’Istruzione, dell’Università e della Ricerca","keywords":"TLR2; Candida albicans; Toll-like receptor; TLR4; Corpus albicans; Microbiology; Biology; Macrophage; Innate immune system; Effector; Antibody opsonization; Receptor; Immunology; Inflammation; Immune system; Phagocytosis; Biochemistry; In vitro","score_opus":0.005426479870513113,"score_gpt":0.22947009985089828,"score_spread":0.22404361998038516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081164937","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872538,0.004450039,0.0000833276,0.0061288057,0.0012867772,0.000600542,0.000018031022,0.00006344645,0.000115245806],"genre_scores_gemma":[0.9959811,0.0005579757,0.00013788385,0.0019882538,0.000054922984,0.00008503711,0.00008183379,0.000024769784,0.0010882223],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99531776,0.0023217555,0.0009210305,0.0006229238,0.000055806126,0.000760738],"domain_scores_gemma":[0.9982102,0.0007354625,0.00032184177,0.00058075285,0.00009239985,0.000059334292],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017837235,0.00036960206,0.00073584134,0.00031508974,0.00021066394,0.000008116262,0.00054051646,0.001041747,0.001344173],"category_scores_gemma":[0.0009237274,0.00024218849,0.000115961215,0.00050687825,0.0018716551,0.000096987766,0.0004084026,0.0010576438,0.0002032774],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005869923,0.00016989581,0.035558872,0.000008121053,0.00016801419,0.00001575949,0.0005301781,0.00000686446,0.94329435,0.00030100168,0.0013042276,0.012772802],"study_design_scores_gemma":[0.0071646073,0.0018916366,0.2899397,0.0002095114,0.0000473516,0.0027431683,0.00020969467,0.0000036135004,0.24809052,0.00006802059,0.44909203,0.00054014556],"about_ca_topic_score_codex":0.00051848765,"about_ca_topic_score_gemma":0.0015967683,"teacher_disagreement_score":0.69520384,"about_ca_system_score_codex":0.0001581503,"about_ca_system_score_gemma":0.00028482557,"threshold_uncertainty_score":0.99956876},"labels":[],"label_agreement":null},{"id":"W2081447765","doi":"10.1111/j.1749-6632.2000.tb05390.x","title":"Natural Immunity and Neuroimmune Host Defense","year":2000,"lang":"en","type":"review","venue":"Annals of the New York Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Immune system; Immunology; Biology; Innate immune system; Immunity; Antigen; Acquired immune system; Antibody","score_opus":0.09540568291327814,"score_gpt":0.3505227408244427,"score_spread":0.25511705791116457,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2081447765","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006441601,0.9912985,1.08006454e-7,0.0011298204,0.00025935576,0.0003148528,0.000013627176,0.000013658416,0.000528474],"genre_scores_gemma":[0.007283685,0.9899029,0.0000117963245,0.00018323434,0.000028126824,0.0000037203686,0.0000047046447,0.000010386788,0.0025714566],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977424,0.00075894047,0.00078218326,0.0002796128,0.000105708736,0.0003311278],"domain_scores_gemma":[0.9982612,0.00060760195,0.0008805267,0.00020708161,0.000025069152,0.000018492588],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011116639,0.00028510523,0.0010523774,0.00023191283,0.00036466843,0.00001832982,0.0013437989,0.00045779662,0.000089197405],"category_scores_gemma":[0.0002512865,0.00016744576,0.00044321013,0.0006080777,0.0017623144,0.00016383824,0.00027645438,0.00081870076,0.00004676875],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007819614,0.00003101098,0.000004794011,0.00091289065,0.00019955091,1.375243e-7,0.000272358,9.159624e-7,0.0041800193,0.0008138836,0.008979509,0.98452675],"study_design_scores_gemma":[0.000109911474,0.00009235087,0.00039326661,0.004060474,0.00015978291,0.00007931358,0.0000347014,3.493901e-7,0.00957969,0.00027363803,0.98503596,0.00018054512],"about_ca_topic_score_codex":0.00011784435,"about_ca_topic_score_gemma":7.327633e-7,"teacher_disagreement_score":0.9843462,"about_ca_system_score_codex":0.000004935674,"about_ca_system_score_gemma":0.00021600346,"threshold_uncertainty_score":0.682824},"labels":[],"label_agreement":null},{"id":"W2082169293","doi":"10.1016/j.imlet.2014.04.002","title":"Corrigendum to “Coronin 1 is dispensable for leukocyte recruitment and liver injury in concanavalin A-induced hepatitis” [Immunol. Lett. 153 (1–2) (2013) 62–70]","year":2014,"lang":"en","type":"erratum","venue":"Immunology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Concanavalin A; Liver injury; Virology; Hepatitis; Immunology; Biology; Medicine; Pharmacology; Genetics","score_opus":0.03263513565454487,"score_gpt":0.2685555427313632,"score_spread":0.2359204070768183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082169293","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.830035,0.033390377,0.00047042686,0.03133191,0.094822615,0.008208279,0.00044465903,0.0003250449,0.00097171013],"genre_scores_gemma":[0.23398879,0.050743494,0.0009836142,0.100697495,0.002959709,0.013514126,0.01806875,0.0014193093,0.57762474],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9944285,0.0010971772,0.0013756515,0.0013567979,0.000121593184,0.0016202789],"domain_scores_gemma":[0.99745274,0.00030901763,0.00072610105,0.0012581741,0.00019016348,0.00006383615],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009789766,0.0010576934,0.001723965,0.0009812843,0.00045995967,0.00008799208,0.00089188095,0.0023289334,0.00070828426],"category_scores_gemma":[0.00027173958,0.0011060317,0.0003310328,0.0002912305,0.0005326344,0.00026909338,0.0004593612,0.0021230653,0.0014572269],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001256931,0.000063380125,0.00016256179,0.00008541796,0.0006635032,0.000025255462,0.0008513262,7.314035e-7,0.3321888,0.000102315455,0.6538225,0.010777276],"study_design_scores_gemma":[0.0026710243,0.0011482923,0.004407821,0.00046322035,0.00017423862,0.000093188646,0.00008673625,0.000017666207,0.10783581,0.000036669582,0.88198155,0.0010837768],"about_ca_topic_score_codex":0.006822123,"about_ca_topic_score_gemma":0.001146444,"teacher_disagreement_score":0.59604615,"about_ca_system_score_codex":0.00080476527,"about_ca_system_score_gemma":0.00032486249,"threshold_uncertainty_score":0.99979156},"labels":[],"label_agreement":null},{"id":"W2082247320","doi":"10.1089/nat.2011.0298","title":"Immunostimulatory Potential of Silencing RNAs Can Be Mediated by a Non-Uridine-Rich Toll-Like Receptor 7 Motif","year":2011,"lang":"en","type":"article","venue":"Nucleic Acid Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"Bundesministerium für Bildung und Forschung","keywords":"TLR7; Small interfering RNA; Biology; Gene silencing; RNA interference; RNA; Sequence motif; Innate immune system; Cell biology; Phosphodiester bond; RNA silencing; Trans-acting siRNA; Structural motif; Toll-like receptor; Molecular biology; Biochemistry; Receptor; Gene","score_opus":0.016308510216030872,"score_gpt":0.21829989081790965,"score_spread":0.20199138060187877,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082247320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9941805,0.0030920324,0.00029223066,0.00018250695,0.0011417337,0.00028089093,0.0000644492,0.00009382566,0.0006718528],"genre_scores_gemma":[0.9977228,0.00056172756,0.0001374829,0.00048716285,0.00002910505,0.00001135405,0.00024797875,0.00005041708,0.00075195014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838096,0.00023744091,0.00057504134,0.000272206,0.00009309779,0.00044128424],"domain_scores_gemma":[0.99890924,0.000087129076,0.00033410394,0.00047532652,0.00016586768,0.000028340019],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00032132957,0.00027935722,0.00039271536,0.00014928923,0.00019297426,0.0000104688315,0.00039843816,0.0004651789,0.001391983],"category_scores_gemma":[0.000035867706,0.0002595373,0.0001405597,0.0001908347,0.0002476144,0.00013683726,0.0000924098,0.00036482455,0.00029610045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005446571,0.00020101025,0.00018732376,0.000017400198,0.0004739216,0.0000026766963,0.0038361156,0.0000034425764,0.9883496,0.000045077504,0.0015533001,0.0047854767],"study_design_scores_gemma":[0.0015775712,0.0003914427,0.0023721734,0.00003464261,0.00013782605,0.000022854652,0.00078022876,0.00008933478,0.97775966,0.00003131193,0.016513135,0.00028983204],"about_ca_topic_score_codex":0.00014579439,"about_ca_topic_score_gemma":0.0000051722163,"teacher_disagreement_score":0.014959835,"about_ca_system_score_codex":0.00006874605,"about_ca_system_score_gemma":0.00012964645,"threshold_uncertainty_score":0.9999857},"labels":[],"label_agreement":null},{"id":"W2082263327","doi":"10.1016/j.immuni.2004.07.010","title":"LPS-Induced Upregulation of SHIP Is Essential for Endotoxin Tolerance","year":2004,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":304,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Cancer Agency","funders":"","keywords":"Lipopolysaccharide; Biology; Autocrine signalling; Downregulation and upregulation; In vivo; Stimulation; Immunology; Bone marrow; Cell biology; Endocrinology; Cell culture","score_opus":0.018718058055246966,"score_gpt":0.26849834903376246,"score_spread":0.2497802909785155,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082263327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959363,0.00048272513,0.0020630935,0.00024280685,0.00048302315,0.00035433733,0.000014300227,0.000036350375,0.0003870765],"genre_scores_gemma":[0.9990743,0.000015162368,0.00019113468,0.000053291486,0.000025686557,0.000032820917,0.00011946572,0.000010030256,0.00047813216],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999233,0.00013147645,0.00030469766,0.000114832954,0.0000281411,0.00018782493],"domain_scores_gemma":[0.99930793,0.00009318365,0.00015902061,0.00031348338,0.000118990596,0.000007385295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029175094,0.000105901905,0.00019248371,0.000075852106,0.00017649373,0.0000073855554,0.00016686751,0.00018655689,0.00016382882],"category_scores_gemma":[0.00010907851,0.00010510713,0.00011032767,0.00009771743,0.000077186385,0.00015140431,0.000034466702,0.00014341895,0.0000846135],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054960285,0.000084219704,0.00007451037,0.000026426462,0.000054699623,1.6953912e-7,0.0011314102,0.000031149673,0.99179685,0.0018435167,0.000097587974,0.0043098433],"study_design_scores_gemma":[0.0021729083,0.00016172366,0.012651589,0.000041399646,0.000022740516,0.000008115721,0.0001174959,0.000008286098,0.98124546,0.001369878,0.0020958572,0.00010451855],"about_ca_topic_score_codex":0.00030803165,"about_ca_topic_score_gemma":0.000015604212,"teacher_disagreement_score":0.012577079,"about_ca_system_score_codex":0.000037018075,"about_ca_system_score_gemma":0.00008488627,"threshold_uncertainty_score":0.42861444},"labels":[],"label_agreement":null},{"id":"W2082423758","doi":"10.1006/cimm.2001.1899","title":"Plasmid DNA Induces Increased Lymphocyte Trafficking: A Specific Role for CpG Motifs","year":2001,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"","keywords":"Biology; CpG site; Immunosurveillance; DNA; Cell biology; Plasmid; CpG Oligodeoxynucleotide; Effector; Molecular biology; Cell; Gene; Gene expression; DNA methylation; Genetics","score_opus":0.0125492678868465,"score_gpt":0.20882980915195617,"score_spread":0.1962805412651097,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082423758","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97479945,0.019509314,0.0014608525,0.00045317126,0.0013920005,0.00058271183,0.0000116482015,0.00022547599,0.0015653846],"genre_scores_gemma":[0.99493957,0.0007175905,0.000063660074,0.000121227305,0.00011579486,0.00020913176,0.00087489886,0.00005517618,0.0029029476],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975756,0.00038570684,0.000602734,0.0005081611,0.000046993337,0.00088079803],"domain_scores_gemma":[0.9988011,0.00027217955,0.00018187502,0.00059619383,0.00012024925,0.000028362636],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00047610744,0.00035952489,0.0005193871,0.00035265242,0.0005012528,0.00003801297,0.00050076796,0.0007260615,0.0013033391],"category_scores_gemma":[0.000104209095,0.00031857015,0.00024786103,0.00019262386,0.00035943554,0.00019516447,0.00011887028,0.0003253961,0.0021024055],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019423984,0.00016785359,0.000039500046,0.000010710278,0.00031922018,0.000021068196,0.00070574007,0.000012927347,0.9798151,0.0027826258,0.0007427836,0.0134400595],"study_design_scores_gemma":[0.0026800719,0.00024623206,0.0002825894,0.000014780807,0.00003414745,0.00017232033,0.00039260113,0.000023776774,0.61388385,0.00035027455,0.3816788,0.00024054476],"about_ca_topic_score_codex":0.00006718831,"about_ca_topic_score_gemma":0.00000569217,"teacher_disagreement_score":0.38093603,"about_ca_system_score_codex":0.00014179778,"about_ca_system_score_gemma":0.0001605469,"threshold_uncertainty_score":0.9999266},"labels":[],"label_agreement":null},{"id":"W2082511494","doi":"10.1016/j.jaci.2011.12.179","title":"The Sialylated Fraction Of IVIg Suppresses Th2-driven Airway Inflammation Via The Induction Of Tolerogenic Dendritic Cells","year":2012,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc; McGill University; Christie (Canada)","funders":"","keywords":"Fraction (chemistry); Immunology; Airway; Dendritic cell; Inflammation; Chemistry; Medicine; Immune system; Anesthesia","score_opus":0.01574816459843926,"score_gpt":0.2783023274107494,"score_spread":0.26255416281231014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082511494","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9862616,0.01018257,0.0005083091,0.0008294538,0.002036142,0.000116328956,0.0000011265829,0.0000061725295,0.000058303296],"genre_scores_gemma":[0.98897237,0.010711493,0.000027362925,0.000020318339,0.00015981292,0.0000027800977,0.0000069449106,0.00000854492,0.000090388196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969899,0.0011867459,0.0014312051,0.00008849285,0.00006727983,0.00023636651],"domain_scores_gemma":[0.9963711,0.0015025942,0.0015191473,0.0002376737,0.00035078096,0.00001869719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014802872,0.00012730583,0.0004122366,0.000097114316,0.00022049982,0.000008867882,0.0002531842,0.00045464156,0.00011762963],"category_scores_gemma":[0.00046453768,0.00007428825,0.00022979929,0.00011679506,0.0008010654,0.00034057713,0.000074314674,0.0006634388,0.000024230701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020458603,0.00020804878,0.00085975055,0.000009503974,0.002394942,8.05147e-7,0.0005443739,0.00003377831,0.9489026,0.0007950082,0.00026890368,0.043936417],"study_design_scores_gemma":[0.0021185104,0.0014243202,0.088736445,0.0000814933,0.00031170712,0.00031839928,0.0015256329,0.000031762855,0.8676394,0.00061608286,0.037056185,0.0001400275],"about_ca_topic_score_codex":0.000031316413,"about_ca_topic_score_gemma":0.000017964941,"teacher_disagreement_score":0.08787669,"about_ca_system_score_codex":0.0000209302,"about_ca_system_score_gemma":0.000078299396,"threshold_uncertainty_score":0.35066122},"labels":[],"label_agreement":null},{"id":"W2082758573","doi":"10.6000/1927-520x.2013.02.02.2","title":"Comparative Analysis of Molecular Structure, Function and Expression of Buffalo (Bubalus bubalis) Toll-Like Receptor 9","year":2013,"lang":"en","type":"article","venue":"Journal of Buffalo Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Biology; Toll-Like Receptor 9; Bubalus; TLR9; Peptide sequence; Genetics; Molecular biology; Gene; Gene expression","score_opus":0.008781417692355128,"score_gpt":0.24764081091371062,"score_spread":0.2388593932213555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082758573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947552,0.00263888,0.0018170186,0.00006009383,0.00040533327,0.00010977778,0.000007942022,0.000003773591,0.0002019877],"genre_scores_gemma":[0.99929076,0.00008149205,0.0005233164,0.000027132457,0.000010308243,0.0000011633297,0.0000074345066,0.0000028149454,0.000055560966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986505,0.0001979332,0.00063832663,0.00015698036,0.00017561999,0.00018066063],"domain_scores_gemma":[0.9980249,0.00010853374,0.00092552387,0.00019749318,0.0007085261,0.00003501979],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006439492,0.000116230134,0.00049905735,0.0007195063,0.00011697427,0.000023014793,0.0002784693,0.00010800767,0.00040257123],"category_scores_gemma":[0.00013018773,0.00008477203,0.00012940395,0.0008741296,0.0005971805,0.0006948894,0.00007217047,0.0001816119,0.000007330045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002479737,0.000040053026,0.0011644538,0.0000094919305,0.00020936411,5.208496e-7,0.0007040789,0.00023081471,0.9956689,0.0002934822,0.0004648418,0.0009660489],"study_design_scores_gemma":[0.00053890306,0.00041508197,0.061535295,0.000052486354,0.0002473654,0.0000257629,0.0008026058,0.00009999518,0.93540883,0.00022357215,0.00056573265,0.00008434264],"about_ca_topic_score_codex":0.00009132567,"about_ca_topic_score_gemma":0.0000031393636,"teacher_disagreement_score":0.060370844,"about_ca_system_score_codex":0.000035535915,"about_ca_system_score_gemma":0.000141696,"threshold_uncertainty_score":0.4407873},"labels":[],"label_agreement":null},{"id":"W2082821890","doi":"10.1016/j.vetimm.2006.04.003","title":"Assessment of the ovine acute phase response and hepatic gene expression in response to Escherichia coli endotoxin","year":2006,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Escherichia coli; Acute-phase protein; Gene; Gene expression; Molecular biology; Microbiology; Genetics; Immunology; Inflammation","score_opus":0.009308967625045298,"score_gpt":0.2745077533069336,"score_spread":0.2651987856818883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082821890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926433,0.0048516686,0.0001740318,0.00090314256,0.0005762161,0.00070988864,0.00003714136,0.000037310623,0.00006728521],"genre_scores_gemma":[0.9976696,0.00033590017,0.0007575049,0.00016252101,0.000010065059,0.00016889749,0.0000400879,0.000027189206,0.00082823256],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99372196,0.0043757674,0.0008298271,0.00048826833,0.00005328384,0.00053089595],"domain_scores_gemma":[0.99818707,0.00071572344,0.0003111537,0.0006999227,0.000066249864,0.000019908815],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0017533642,0.00034379138,0.00064087985,0.0004578991,0.00031522894,0.000014911039,0.00035231147,0.00047973823,0.00008146099],"category_scores_gemma":[0.00025834655,0.00027810864,0.000085525695,0.00031040134,0.00079143705,0.00016861306,0.0006079152,0.0005345168,0.000021922264],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03718954,0.00033719733,0.0029606582,0.00001657906,0.00007376792,0.0001255105,0.0005396625,0.000004997789,0.9576452,0.000113981194,0.000041689902,0.0009512125],"study_design_scores_gemma":[0.0039432477,0.0037109295,0.4959409,0.000058366404,0.00003396592,0.0011828087,0.00013006244,0.0000080681175,0.4922374,0.00006078938,0.0025089062,0.00018455628],"about_ca_topic_score_codex":0.000078851226,"about_ca_topic_score_gemma":0.000005305316,"teacher_disagreement_score":0.49298024,"about_ca_system_score_codex":0.00008295432,"about_ca_system_score_gemma":0.00015157904,"threshold_uncertainty_score":0.9999671},"labels":[],"label_agreement":null},{"id":"W2082879633","doi":"10.1186/1756-0500-5-93","title":"The influence of different anticoagulants and sample preparation methods on measurement of mCD14 on bovine monocytes and polymorphonuclear neutrophil leukocytes","year":2012,"lang":"en","type":"article","venue":"BMC Research Notes","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ste. Anne's Hospital; McGill University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Novalait; Université de Montréal; Public Health Agency of Canada; Dairy Farmers of Canada","keywords":"Whole blood; Molecular biology; Ethylenediaminetetraacetic acid; Heparin; Monocyte; Sodium citrate; CD14; Monoclonal antibody; Granulocyte; Medicine; Immunology; Flow cytometry; Antibody; Chemistry; Biology; Pathology; Internal medicine","score_opus":0.14445907832643873,"score_gpt":0.40743370863689476,"score_spread":0.26297463031045604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082879633","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99515617,0.0041888226,0.00008706228,0.00016359962,0.000052075524,0.00030100162,0.000005252494,0.000008912548,0.000037105507],"genre_scores_gemma":[0.99864805,0.0009664976,0.00029714915,0.0000071345335,0.000020527134,0.000017405298,0.0000045416596,0.000008491266,0.000030195899],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99770945,0.0013938043,0.00028137793,0.00015005865,0.00015634218,0.0003089807],"domain_scores_gemma":[0.99483293,0.004554181,0.000117964744,0.00027690572,0.00019278984,0.000025207415],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026174411,0.000109990695,0.00022013577,0.00015078945,0.00026103036,0.000018265353,0.00012144803,0.00009072723,0.0000116648225],"category_scores_gemma":[0.003965051,0.00006889643,0.00003295449,0.000094082345,0.0004138091,0.00010445748,0.00010789118,0.00018291315,0.000009506804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028495193,0.00008398733,0.018040506,0.000052939322,0.00006242791,6.7515565e-8,0.00047011508,0.000017396214,0.96523494,0.0018640182,0.00002923115,0.011294867],"study_design_scores_gemma":[0.00033719646,0.0006837874,0.36472178,0.00006129464,0.000008957493,0.0000019110257,0.00009460321,0.000029956376,0.6335256,0.0001900003,0.00029961957,0.00004531909],"about_ca_topic_score_codex":0.0002975258,"about_ca_topic_score_gemma":0.000017502021,"teacher_disagreement_score":0.34668127,"about_ca_system_score_codex":0.000034942244,"about_ca_system_score_gemma":0.000043389005,"threshold_uncertainty_score":0.47468224},"labels":[],"label_agreement":null},{"id":"W2082906715","doi":"10.1016/s1556-0864(15)30360-9","title":"Does Granulocyte Colony–Stimulating Factor Affect Survival in Patients with Advanced Non-small Cell Lung Cancer?","year":2006,"lang":"en","type":"article","venue":"Journal of Thoracic Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Amgen Canada","keywords":"Medicine; Internal medicine; Neutropenia; Carboplatin; Lung cancer; Chemotherapy; Febrile neutropenia; Performance status; Regimen; Granulocyte colony-stimulating factor; Hazard ratio; Gastroenterology; Surgery; Chemotherapy regimen; Oncology; Cisplatin; Confidence interval","score_opus":0.00630827182617636,"score_gpt":0.3047303130474068,"score_spread":0.2984220412212304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2082906715","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963046,0.00068966066,0.0002703287,0.00018232499,0.0017164769,0.00038711066,0.000010603684,0.0000128959455,0.000426018],"genre_scores_gemma":[0.9987511,0.00004696755,0.0004573713,0.00003309789,0.000090529305,0.0000125371225,0.000023333863,0.000020524083,0.00056453235],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99807376,0.00058636145,0.00070199266,0.00017845046,0.0000753335,0.00038411983],"domain_scores_gemma":[0.9982322,0.00042766653,0.00091446633,0.00014279094,0.00025959892,0.000023271428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000523849,0.00020702711,0.00063421734,0.00028524024,0.000111691945,0.000012907164,0.00020882658,0.0002993265,0.00011965339],"category_scores_gemma":[0.000059172846,0.00012544179,0.00010768899,0.00018498686,0.00008048675,0.00021916385,0.00004310203,0.0005590802,0.000012651229],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010664545,0.000518884,0.7961944,0.00010356719,0.00012848037,0.000057136403,0.0005080138,0.0024073566,0.15512933,0.0000057878738,0.00020438607,0.034078147],"study_design_scores_gemma":[0.0049513173,0.002240269,0.90413994,0.00020427388,0.000116749296,0.00001640093,0.00013082691,0.000050137794,0.0849889,0.00001788194,0.0029062168,0.00023710189],"about_ca_topic_score_codex":0.00014554596,"about_ca_topic_score_gemma":0.00039356726,"teacher_disagreement_score":0.107945554,"about_ca_system_score_codex":0.00038524327,"about_ca_system_score_gemma":0.00032091243,"threshold_uncertainty_score":0.5115368},"labels":[],"label_agreement":null},{"id":"W2083273816","doi":"10.1016/j.molimm.2005.04.010","title":"Mouse splenic B lymphocyte activation using different activation stimuli induces in vitro splicing of tumor necrosis factor-α nuclear pre-mRNA","year":2005,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Cancer Institute; National Institutes of Health","keywords":"Tumor necrosis factor alpha; Biology; Cell biology; Ionomycin; Molecular biology; RNA splicing; Cancer research; Immunology; RNA; Biochemistry","score_opus":0.013792084009085125,"score_gpt":0.2443308661974322,"score_spread":0.23053878218834706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083273816","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99768883,0.00047634274,0.00095662853,0.00019529709,0.00015442997,0.00040448457,0.000007133779,0.000066690554,0.000050190716],"genre_scores_gemma":[0.99927425,0.000075468175,0.00023565722,0.00013380648,0.000016854578,0.000019693915,0.00010986735,0.000045807014,0.00008860255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794775,0.00047015192,0.0006796699,0.00036553,0.000072785515,0.000464099],"domain_scores_gemma":[0.99888295,0.00012004277,0.00045576063,0.00043497726,0.00009128638,0.0000149589805],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001567998,0.00030037313,0.0004948302,0.00051241677,0.0001395263,0.000019709012,0.00027840398,0.0003969967,0.00016609704],"category_scores_gemma":[0.00014008359,0.00030094394,0.00013884743,0.0002549131,0.00016188291,0.0003641103,0.0001479151,0.0003930341,0.0000514331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018354222,0.00019013192,0.00008629366,0.00002099753,0.00019357786,0.000002026139,0.001111526,0.0005393297,0.98520964,0.00011632038,0.0000049441655,0.01068979],"study_design_scores_gemma":[0.002283366,0.00015770493,0.008753978,0.00008033002,0.000029537578,0.000025323456,0.00016835383,0.00053244,0.9872062,0.000025115782,0.00047807037,0.00025957503],"about_ca_topic_score_codex":0.0005955535,"about_ca_topic_score_gemma":0.0000071990717,"teacher_disagreement_score":0.010430215,"about_ca_system_score_codex":0.00045628866,"about_ca_system_score_gemma":0.0000997622,"threshold_uncertainty_score":0.99994427},"labels":[],"label_agreement":null},{"id":"W2083412868","doi":"10.1016/j.chom.2008.12.011","title":"Shigella Induces Mitochondrial Dysfunction and Cell Death in Nonmyleoid Cells","year":2009,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":154,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Biology; Cell biology; Shigella; Programmed cell death; Mitochondrion; Inflammasome; Shigella flexneri; Signal transduction; Intracellular; Apoptosis; Oxidative stress; Microbiology; Immunology; Inflammation; Biochemistry; Bacteria; Escherichia coli; Genetics; Salmonella","score_opus":0.006503378628795673,"score_gpt":0.20447071626131866,"score_spread":0.19796733763252297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083412868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886779,0.0042949254,0.00006848461,0.00015407201,0.0010376372,0.00032881094,0.0000060586904,0.00004901139,0.0053830757],"genre_scores_gemma":[0.99214923,0.0005787501,0.0001620004,0.00025308356,0.000080516875,0.0000075071443,0.00008633895,0.000016636206,0.0066659045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862,0.00018928922,0.00037569864,0.00037076394,0.000031333915,0.00041291452],"domain_scores_gemma":[0.9994638,0.00007895475,0.0001368284,0.00025556254,0.000039342507,0.00002550986],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018144945,0.00024272285,0.00027748162,0.00022350512,0.0001516034,0.00004101624,0.00015849841,0.0004102834,0.0002603518],"category_scores_gemma":[0.000012894006,0.0002352218,0.00007075581,0.0001523561,0.000069001486,0.0001812457,0.000050424238,0.00037814505,0.00087846175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037872494,0.00015756417,0.00019132455,0.000017612749,0.000008288082,0.00000813631,0.00070368225,0.000004307267,0.99445623,0.000026753798,0.002370176,0.0016771883],"study_design_scores_gemma":[0.0021460184,0.00029533228,0.0073600053,0.000030423356,0.000023353197,0.00002066708,0.0001656611,0.0000025341235,0.95599914,0.00004242888,0.033663094,0.00025135433],"about_ca_topic_score_codex":0.000087657536,"about_ca_topic_score_gemma":0.000013289766,"teacher_disagreement_score":0.038457114,"about_ca_system_score_codex":0.00005514037,"about_ca_system_score_gemma":0.0000611656,"threshold_uncertainty_score":0.99989945},"labels":[],"label_agreement":null},{"id":"W2083543804","doi":"10.1016/j.it.2007.04.005","title":"Complexities of targeting innate immunity to treat infection","year":2007,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Innate immune system; Immunity; Immunology; Biology; Inflammation; Immune system; Acquired immune system; Pattern recognition receptor; Effector; Toll-like receptor","score_opus":0.07511651795132482,"score_gpt":0.36619348252020906,"score_spread":0.2910769645688842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083543804","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005268364,0.98713845,0.00003541099,0.000020894742,0.0011935756,0.00033478014,0.000028831679,0.00009282209,0.005886876],"genre_scores_gemma":[0.0027449804,0.9924474,0.00007109589,0.000016066995,0.000041313902,0.00009114174,0.0016201303,0.00005796475,0.0029099227],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958426,0.0013416064,0.0016806629,0.00040766096,0.00004677534,0.0006806937],"domain_scores_gemma":[0.99799836,0.00054642453,0.00070733775,0.000640081,0.00009223305,0.000015544834],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009552291,0.00055704365,0.0023118015,0.0033697758,0.00014647174,0.000013051593,0.000464274,0.0012848858,0.0010321767],"category_scores_gemma":[0.00021244462,0.0005055082,0.00046470974,0.0013724329,0.00037843583,0.00014550917,0.00030898335,0.001181076,0.00058510405],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026031348,0.00012594802,0.000012453414,0.0011424255,0.00030941016,0.0000068592,0.0005413347,0.0000018953407,0.0026305744,0.0011608652,0.00053392386,0.993274],"study_design_scores_gemma":[0.00074901537,0.00039183462,0.00048238316,0.0022185612,0.0002043803,0.00011948326,0.00010727575,1.5934104e-7,0.0035715823,0.000055839144,0.9916606,0.00043888186],"about_ca_topic_score_codex":0.0015107029,"about_ca_topic_score_gemma":0.00012425137,"teacher_disagreement_score":0.9928351,"about_ca_system_score_codex":0.0002863654,"about_ca_system_score_gemma":0.00013039424,"threshold_uncertainty_score":0.999881},"labels":[],"label_agreement":null},{"id":"W2083613729","doi":"10.1073/pnas.1400478111","title":"Unleashing the potential of NOD- and Toll-like agonists as vaccine adjuvants","year":2014,"lang":"en","type":"review","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":303,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Adjuvant; Innate immune system; Pattern recognition receptor; Acquired immune system; Vaccine adjuvant; Immune system; Biology; Receptor; Immunology; Immunity; Inflammasome; Toll-like receptor; Nod; Computational biology; Inflammation; Gene; Genetics","score_opus":0.02969744894606244,"score_gpt":0.32058439532240596,"score_spread":0.2908869463763435,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083613729","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022910057,0.97420806,5.5328417e-7,0.0008482982,0.00014045226,0.00042611928,0.000015661511,0.0000081019225,0.001442726],"genre_scores_gemma":[0.19230704,0.8066239,0.000047220612,0.00009756751,0.00007735476,0.00001555364,0.0000024273984,0.000008902497,0.0008200488],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986157,0.000058216927,0.00067626894,0.00022890748,0.00026041138,0.00016053593],"domain_scores_gemma":[0.9980571,0.00030797633,0.0013984757,0.000017157578,0.00021051613,0.000008763385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021811181,0.00016887313,0.00064602273,0.00020449868,0.00029814633,0.000018661443,0.0009969622,0.0003026303,0.000028588362],"category_scores_gemma":[0.00065365434,0.00008597921,0.00020173786,0.00037536368,0.0008001614,0.00022113012,0.00026617927,0.00034901607,0.000009255532],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000252644,0.00014656289,0.00013246859,0.01278106,0.000921898,3.8955946e-8,0.0007278677,0.000009897467,0.2883108,0.07661557,0.0062079807,0.6138932],"study_design_scores_gemma":[0.0009495753,0.00030963984,0.0036514117,0.0116477795,0.00090009597,0.0005424646,0.0003456241,0.000042545336,0.07978118,0.012120048,0.88920695,0.00050271343],"about_ca_topic_score_codex":0.000008450255,"about_ca_topic_score_gemma":4.6197357e-8,"teacher_disagreement_score":0.88299894,"about_ca_system_score_codex":0.000018747083,"about_ca_system_score_gemma":0.00009358873,"threshold_uncertainty_score":0.35061306},"labels":[],"label_agreement":null},{"id":"W2083776964","doi":"10.1097/01.shk.0000136095.96306.08","title":"IMPAIRED INDUCTION OF IL-10 EXPRESSION IN THE LUNG FOLLOWING HEMORRHAGIC SHOCK","year":2004,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"","keywords":"Proinflammatory cytokine; Resuscitation; Inflammation; Cytokine; Immunology; Lung; Messenger RNA; Medicine; Lipopolysaccharide; Shock (circulatory); Endocrinology; Internal medicine; Biology; Anesthesia; Gene","score_opus":0.010579707560862482,"score_gpt":0.24322663996568808,"score_spread":0.2326469324048256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2083776964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996312,0.0013569207,0.000250065,0.00035073046,0.00041939455,0.0002124964,0.0000014202269,0.000025957848,0.0010709672],"genre_scores_gemma":[0.99922085,0.000019903267,0.00008383671,0.000046952286,0.00002441306,0.000011968428,0.000050421047,0.000007873486,0.0005337836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991335,0.00020443145,0.0002814547,0.00014100957,0.000044636483,0.0001949672],"domain_scores_gemma":[0.99956393,0.000062527455,0.000092146875,0.0002524259,0.000023457844,0.0000055000633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004010421,0.00010285075,0.00015991763,0.00011467507,0.00010063428,0.0000075179773,0.00017179004,0.00017944013,0.00012361565],"category_scores_gemma":[0.00008412755,0.00007258398,0.00010199749,0.00018466024,0.000039016577,0.00016072227,0.000036168625,0.00019963091,0.00011531022],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020169094,0.000058532216,0.0003469422,0.000014219324,0.000022737695,0.0000054660027,0.0022727603,0.000084390565,0.9929216,0.0001337634,0.00089398545,0.0030439326],"study_design_scores_gemma":[0.0018692649,0.00014694751,0.012990922,0.00012959355,0.000026953923,0.000053277447,0.0018141038,0.000012057704,0.979261,0.00054405537,0.0030173156,0.00013451652],"about_ca_topic_score_codex":0.00006140295,"about_ca_topic_score_gemma":0.000010694865,"teacher_disagreement_score":0.013660587,"about_ca_system_score_codex":0.000057596524,"about_ca_system_score_gemma":0.0000575571,"threshold_uncertainty_score":0.29598886},"labels":[],"label_agreement":null},{"id":"W2084389215","doi":"10.1038/gene.2013.5","title":"Association of common single-nucleotide polymorphisms in innate immune genes with differences in TLR-induced cytokine production in neonates","year":2013,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Prevention of Organ Failure; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; University of British Columbia; University of Washington","keywords":"Biology; Single-nucleotide polymorphism; Innate immune system; Immunology; TLR3; Chemokine; Genotype; Genetics; SNP; Immune system; Cytokine; Gene; Toll-like receptor","score_opus":0.014073220568004379,"score_gpt":0.20728338907920169,"score_spread":0.1932101685111973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084389215","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99383384,0.0049087238,0.0000013807168,0.00061851,0.00018913667,0.0003680831,0.000002512603,0.000015272046,0.00006253206],"genre_scores_gemma":[0.99851143,0.0010677436,0.000019198715,0.00001376633,0.000010708123,0.000039333652,0.00005561726,0.000010271561,0.00027194986],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984542,0.00053657015,0.00051454926,0.00017652284,0.00004638213,0.00027175492],"domain_scores_gemma":[0.999307,0.000119703865,0.00027425677,0.00020770017,0.00008287015,0.0000085156025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054706744,0.0001635335,0.00039121194,0.00034721656,0.00007961146,0.00001831465,0.00012536101,0.00019668197,0.00005037252],"category_scores_gemma":[0.00007392449,0.00013600117,0.000027976368,0.0003488928,0.00008008537,0.0003134786,0.00007236366,0.0002847151,0.0000125934175],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017368574,0.00015599663,0.2829116,0.000015275738,0.000027426793,7.075465e-7,0.00078441383,0.00000591713,0.68685,0.000011052192,0.000003574417,0.02906031],"study_design_scores_gemma":[0.0007418579,0.00015334153,0.5613073,0.00007968547,0.000006401883,0.0000053906515,0.0004970935,0.000015890604,0.43696895,0.0000672216,0.00006111815,0.00009572056],"about_ca_topic_score_codex":0.013982484,"about_ca_topic_score_gemma":0.0021887515,"teacher_disagreement_score":0.2783957,"about_ca_system_score_codex":0.00008976358,"about_ca_system_score_gemma":0.000033244996,"threshold_uncertainty_score":0.9925835},"labels":[],"label_agreement":null},{"id":"W2084428844","doi":"10.1111/j.1365-2826.2010.01967.x","title":"Neonatal Programming by Neuroimmune Challenge: Effects on Responses and Tolerance to Septic Doses of Lipopolysaccharide in Adult Male and Female Rats","year":2010,"lang":"en","type":"article","venue":"Journal of Neuroendocrinology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Canadian Institutes of Health Research","keywords":"Lipopolysaccharide; Immune system; Hypothermia; Sepsis; Internal medicine; Endocrinology; Hyperthermia; Medicine; Immunology","score_opus":0.007529439444189234,"score_gpt":0.24914405657440328,"score_spread":0.24161461713021404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084428844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942756,0.0024663715,0.0000060429397,0.0022645378,0.0007109971,0.00024235796,0.0000031245809,0.0000099746785,0.000020983955],"genre_scores_gemma":[0.9984599,0.0009601653,0.0000994909,0.0001924079,0.000032682205,0.000010452163,0.0000015024101,0.000016001273,0.00022742696],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984633,0.00037968537,0.00054444454,0.0002153811,0.00005353603,0.00034370838],"domain_scores_gemma":[0.998687,0.0006629254,0.00031576597,0.00019112039,0.00010588526,0.000037294853],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011531839,0.00018172403,0.0004537825,0.00040169654,0.00006976889,0.000013790866,0.00017842936,0.000099540026,0.000018547267],"category_scores_gemma":[0.00072197773,0.00015952841,0.000056822493,0.00009569197,0.00018434234,0.0001480712,0.0000935337,0.00073325826,0.000010433811],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003108859,0.000095094976,0.0029896693,0.000056151595,0.00003313945,0.0004601662,0.0004323852,0.0000021070134,0.9334075,0.0002236139,0.00010122193,0.05909008],"study_design_scores_gemma":[0.002451705,0.0037822735,0.042588137,0.00012423069,0.000029542083,0.008629118,0.00017571461,0.0000035316384,0.9342502,0.000024007393,0.007787737,0.00015381098],"about_ca_topic_score_codex":0.000024826348,"about_ca_topic_score_gemma":0.000023844093,"teacher_disagreement_score":0.058936268,"about_ca_system_score_codex":0.000008850257,"about_ca_system_score_gemma":0.0000383534,"threshold_uncertainty_score":0.65053797},"labels":[],"label_agreement":null},{"id":"W2084474700","doi":"10.1097/01.ccm.0000156242.44356.c5","title":"Polymorphisms in CD14, mannose-binding lectin, and Toll-like receptor-2 are associated with increased prevalence of infection in critically ill adults*","year":2005,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":178,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Michael Smith Health Research BC; St. Paul's Hospital; Canadian Institutes of Health Research","funders":"","keywords":"Mannan-binding lectin; Medicine; Immunology; Intensive care; Sepsis; Septic shock; CD14; Intensive care unit; Internal medicine; Lectin; Immune system; Intensive care medicine","score_opus":0.008376763300874357,"score_gpt":0.2536173663414922,"score_spread":0.24524060304061782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084474700","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99201095,0.0038440886,0.000048927894,0.0032325662,0.00020903391,0.00023944615,0.000011894356,0.00003524898,0.00036781444],"genre_scores_gemma":[0.99905616,0.00017785146,0.000033552333,0.0004204133,0.00003782571,0.000023588313,0.00008610856,0.000013611047,0.00015088684],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984678,0.0003912174,0.00046373493,0.00026879043,0.00007569493,0.00033278763],"domain_scores_gemma":[0.9985556,0.00070190796,0.00007266166,0.00014674832,0.00048700787,0.000036083602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044579708,0.0001665944,0.00038840514,0.00030798308,0.00006878018,0.000004952002,0.00006967076,0.00026316717,0.00030488172],"category_scores_gemma":[0.0053963126,0.00013840142,0.000026499389,0.00028794623,0.0005350219,0.00015941483,0.0000332703,0.00038607913,0.000014989002],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00323152,0.00045456816,0.7207039,0.0010164746,0.00007093903,0.00006593246,0.005281939,0.000004463204,0.25419292,0.0012460654,0.0008906474,0.012840629],"study_design_scores_gemma":[0.0061788093,0.0015704836,0.9361015,0.0044118618,0.00010608827,0.000087677996,0.0024731518,0.000026937345,0.047593042,0.00004899744,0.0010967779,0.00030469033],"about_ca_topic_score_codex":0.0003971306,"about_ca_topic_score_gemma":0.0006399744,"teacher_disagreement_score":0.21539758,"about_ca_system_score_codex":0.00014612362,"about_ca_system_score_gemma":0.000052033563,"threshold_uncertainty_score":0.646028},"labels":[],"label_agreement":null},{"id":"W2084523295","doi":"10.1016/j.autrev.2011.10.007","title":"The biological significance of TLR3 variant, L412F, in conferring susceptibility to cutaneous candidiasis, CMV and autoimmunity","year":2011,"lang":"en","type":"review","venue":"Autoimmunity Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; SickKids Foundation; University of Toronto","funders":"","keywords":"TLR3; Autoimmunity; TLR2; Immunology; Biology; Toll-like receptor; TLR7; Innate immune system; Receptor; Immune system; Genetics","score_opus":0.09567956113437677,"score_gpt":0.3261355630337341,"score_spread":0.23045600189935733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084523295","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003839202,0.99141026,0.000020900217,0.000035005705,0.00046558428,0.0034486079,0.000042494234,0.000057083867,0.0006808386],"genre_scores_gemma":[0.0044266856,0.9943941,0.0000551076,0.000036670743,0.000015977297,0.00039778292,0.00019749676,0.00003908318,0.00043708942],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9881321,0.007837498,0.0026520875,0.000594925,0.00005830116,0.00072509574],"domain_scores_gemma":[0.9946553,0.00197308,0.0012915513,0.0019085741,0.00012114925,0.00005033417],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00542596,0.0007549418,0.003699934,0.00027870561,0.0005619679,0.000049743037,0.0013203487,0.0009384022,0.00028219118],"category_scores_gemma":[0.00211998,0.00047654597,0.0005795103,0.0005907888,0.0010765766,0.00013591057,0.0006861093,0.0018224494,0.00044053572],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121490186,0.00013786888,0.00003267362,0.0031992758,0.00018302107,0.000009032865,0.00090335234,1.3910564e-7,0.0010882735,0.0010503442,0.0001528894,0.9931216],"study_design_scores_gemma":[0.0002554821,0.00023945291,0.0006630704,0.0060868543,0.00024301982,0.00029842177,0.00015630295,3.8718153e-7,0.00012509325,0.00009863187,0.99134123,0.00049203815],"about_ca_topic_score_codex":0.0025986393,"about_ca_topic_score_gemma":0.00046733912,"teacher_disagreement_score":0.9926296,"about_ca_system_score_codex":0.00020811241,"about_ca_system_score_gemma":0.0005013006,"threshold_uncertainty_score":0.9997686},"labels":[],"label_agreement":null},{"id":"W2084740946","doi":"10.1016/j.immuni.2006.02.014","title":"IFN-γ Suppresses IL-10 Production and Synergizes with TLR2 by Regulating GSK3 and CREB/AP-1 Proteins","year":2006,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":407,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"National Center for Research Resources; National Institutes of Health","keywords":"CREB; TLR2; Biology; Innate immune system; Signal transduction; MAPK/ERK pathway; Zymosan; Cell biology; STAT3; TRIF; TLR4; Transcription factor; Toll-like receptor; Immunology; Immune system; Gene; In vitro; Biochemistry","score_opus":0.004886622886850868,"score_gpt":0.19616195041436235,"score_spread":0.19127532752751147,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2084740946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938804,0.004247509,0.000048766236,0.00041966958,0.00009098236,0.0003447598,0.000010808726,0.00008550065,0.0008716357],"genre_scores_gemma":[0.9905017,0.00010580074,0.00014356736,0.00001194764,0.000032176787,0.000036557736,0.00017410022,0.000015826132,0.008978333],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989836,0.00030941473,0.00022482203,0.00021513423,0.000036097874,0.0002308911],"domain_scores_gemma":[0.999395,0.00009252922,0.00013169459,0.00028026826,0.000089768306,0.000010732927],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003111574,0.00016660904,0.00019543308,0.00007322484,0.0004933565,0.00004328008,0.0000797732,0.00015472344,0.000097424185],"category_scores_gemma":[0.00016365043,0.00013530915,0.000019555342,0.00010046272,0.00032244736,0.0003080009,0.00007152177,0.00023562631,0.000022022597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053692784,0.00007491017,0.0012529566,0.00004811424,0.000056683482,9.466363e-7,0.00035180742,0.000006395127,0.98885536,0.00014770351,0.002762036,0.005906158],"study_design_scores_gemma":[0.0007819713,0.00030152954,0.045185085,0.000105088424,0.000042613843,0.0001471242,0.00037179675,0.0000049169766,0.9257285,0.00011872846,0.026982184,0.00023044071],"about_ca_topic_score_codex":0.0014826029,"about_ca_topic_score_gemma":0.00016875303,"teacher_disagreement_score":0.06312684,"about_ca_system_score_codex":0.00001797886,"about_ca_system_score_gemma":0.000031168594,"threshold_uncertainty_score":0.5517747},"labels":[],"label_agreement":null},{"id":"W2085159547","doi":"10.1073/pnas.1215165110","title":"Toll-like receptor 4 stimulation with the detoxified ligand monophosphoryl lipid A improves Alzheimer’s disease-related pathology","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":250,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; GlaxoSmithKline (Canada); Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Agonist; Microglia; Toll-like receptor; Receptor; Medicine; Stimulation; Immunology; Pathogenesis; Immune system; Alzheimer's disease; Disease; Pharmacology; Inflammation; Pathology; Internal medicine; Innate immune system","score_opus":0.0185093325557851,"score_gpt":0.24927986019603068,"score_spread":0.23077052764024558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085159547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905489,0.0010436494,8.029575e-7,0.0072318083,0.00006308892,0.00048808902,0.0000044558565,0.000017398015,0.0006018036],"genre_scores_gemma":[0.99892056,0.00004432189,0.00009945008,0.0002668019,0.000020790827,0.000052292955,0.000001430514,0.0000050133285,0.0005893534],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990624,0.00003030823,0.00032361897,0.00021067455,0.00019522014,0.0001777822],"domain_scores_gemma":[0.9990109,0.00018964718,0.00047790105,0.000017053113,0.00028992325,0.000014578528],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007644128,0.00011504327,0.00015126789,0.00010604096,0.00036094023,0.000022913959,0.0005299165,0.00014538445,0.00006606233],"category_scores_gemma":[0.00021088512,0.000058426824,0.00006419138,0.00039334776,0.0011274221,0.00046943684,0.00008980045,0.00020622188,0.00003342482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015578163,0.00002958059,0.0011659656,0.000009497719,0.000059415917,4.018397e-9,0.0003942156,0.000054029173,0.9903528,0.0043827407,0.00215248,0.0012434534],"study_design_scores_gemma":[0.00044807317,0.00013253548,0.16139604,0.000049576403,0.00005932753,0.00001242714,0.00034685544,0.00032870367,0.8318557,0.004237886,0.0010235818,0.00010927231],"about_ca_topic_score_codex":0.000010493572,"about_ca_topic_score_gemma":7.567207e-8,"teacher_disagreement_score":0.16023007,"about_ca_system_score_codex":0.000016535596,"about_ca_system_score_gemma":0.00005583098,"threshold_uncertainty_score":0.41540337},"labels":[],"label_agreement":null},{"id":"W2085428764","doi":"10.1016/s0264-410x(03)00003-3","title":"Induction of protective immunity in pigs after immunisation with CpG oligodeoxynucleotides formulated in a lipid-based delivery system (Biphasix?)","year":2003,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; Adjuvant; CpG site; Immunology; Immune system; Lipid A; Immunity; Biology; Medicine; Pharmacology; Lipopolysaccharide; DNA methylation; Biochemistry","score_opus":0.007084664130578877,"score_gpt":0.20080326448327906,"score_spread":0.1937186003527002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085428764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981275,0.00047773498,0.00033916358,0.000038245464,0.00010367903,0.000730099,0.0000044360686,0.000040201132,0.0001388921],"genre_scores_gemma":[0.999601,0.000013734199,0.00008459672,0.000013618914,0.0000054662005,0.00018884504,0.0000451222,0.000016423259,0.00003117699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842453,0.00064739404,0.00048553178,0.0001731079,0.00003867698,0.00023073342],"domain_scores_gemma":[0.99926555,0.000090387024,0.0002150475,0.00028450036,0.00013602518,0.000008463394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00058930216,0.00016765863,0.00031425917,0.00051589194,0.000060651946,0.0000068719755,0.00008937167,0.00022689864,0.00011059994],"category_scores_gemma":[0.00009706214,0.00014142694,0.00004470289,0.0005063814,0.000021620592,0.00026582676,0.000017767215,0.00031928936,0.000028472432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010500434,0.00036264132,0.02953183,0.00020784418,0.00011524284,0.000010523153,0.0016573161,0.0011114237,0.9529591,0.0006528087,0.00000826083,0.0028825705],"study_design_scores_gemma":[0.0058962475,0.0005286114,0.4717117,0.0004920605,0.000026466605,0.00003584215,0.0010315949,0.00017867518,0.5197304,0.00003406728,0.00014388394,0.00019047297],"about_ca_topic_score_codex":0.0010877183,"about_ca_topic_score_gemma":0.00032684157,"teacher_disagreement_score":0.44217986,"about_ca_system_score_codex":0.00019928445,"about_ca_system_score_gemma":0.00011342359,"threshold_uncertainty_score":0.5767223},"labels":[],"label_agreement":null},{"id":"W2085430830","doi":"10.1517/13543784.11.12.1795","title":"Novel therapies for sepsis: antiendotoxin therapies","year":2002,"lang":"en","type":"review","venue":"Expert Opinion on Investigational Drugs","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre; Manitoba Health","funders":"","keywords":"Sepsis; Lipopolysaccharide; Immune system; Lipid A; Monoclonal antibody; Immunology; Receptor; Septic shock; Biology; Antibody; Medicine; Internal medicine","score_opus":0.08159723834029357,"score_gpt":0.3380841695788234,"score_spread":0.25648693123852984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085430830","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000008298737,0.9938639,0.00020878084,0.0011108688,0.002540842,0.0013428569,0.00020075466,0.00014111036,0.0005826156],"genre_scores_gemma":[0.000013194944,0.9893602,0.00070598157,0.0007918718,0.00044917045,0.0014364959,0.0035728356,0.0000890833,0.0035811616],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99760026,0.00039723836,0.0008788738,0.00057346316,0.00013099096,0.0004191614],"domain_scores_gemma":[0.99774367,0.0010762359,0.00055243215,0.00045079773,0.00013906586,0.00003782222],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037603214,0.0006128828,0.0011111274,0.0004246805,0.00044655305,0.00006115008,0.0004429081,0.0007280853,0.0005691799],"category_scores_gemma":[0.00020020003,0.0004817537,0.0006438779,0.00023135981,0.00036691315,0.00019382098,0.00005410481,0.00042558764,0.00096528226],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008951822,0.0002190606,3.77326e-7,0.0010512546,0.001083329,2.7713696e-7,0.003350179,0.0000019729484,0.0026516567,0.032111943,0.09308983,0.8663506],"study_design_scores_gemma":[0.0008699226,0.0001678948,0.0000033053905,0.0040995413,0.000025433013,0.000026405545,0.000178659,0.000005251959,0.0012783495,0.0003886604,0.9924306,0.00052593666],"about_ca_topic_score_codex":0.000013158922,"about_ca_topic_score_gemma":2.069776e-7,"teacher_disagreement_score":0.8993408,"about_ca_system_score_codex":0.00012548544,"about_ca_system_score_gemma":0.00027967463,"threshold_uncertainty_score":0.9998126},"labels":[],"label_agreement":null},{"id":"W2085710013","doi":"10.1016/j.cellimm.2005.08.009","title":"Summary of the animal homologue section of HLDA8","year":2005,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Monoclonal antibody; Flow cytometry; Epitope; Antigen; Molecular biology; Antibody; Immunology","score_opus":0.006360754273959131,"score_gpt":0.19525890370843793,"score_spread":0.1888981494344788,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085710013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9849356,0.011364156,0.00010465037,0.00064181216,0.0009712282,0.00017442323,0.000006304761,0.000026947782,0.0017749196],"genre_scores_gemma":[0.9968444,0.00016747473,0.000037204638,0.00003342082,0.000044400258,0.000008845928,0.00004272275,0.000011664582,0.0028098752],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99869025,0.00042841776,0.00046152063,0.00015506281,0.000030063698,0.00023470336],"domain_scores_gemma":[0.9990529,0.000098870536,0.00030723112,0.000456383,0.00007991455,0.0000046925243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027594322,0.00012738327,0.00027775325,0.00012410434,0.00010872453,0.0000019835948,0.00032723873,0.00037675683,0.00038325047],"category_scores_gemma":[0.00007812771,0.00009737201,0.00016432485,0.00017443867,0.0005158069,0.00008701698,0.00014016224,0.0002993968,0.00013207692],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040655394,0.000081989216,0.00063645793,0.0000157758,0.00016631112,9.2595e-7,0.0002906466,0.000011699474,0.9924547,0.0022341625,0.0007033698,0.0029973807],"study_design_scores_gemma":[0.00067710207,0.0002298086,0.015608653,0.00002589771,0.00003674099,0.000058933787,0.00009331166,0.0000056846466,0.9130951,0.00006393416,0.070021585,0.00008322845],"about_ca_topic_score_codex":0.000080035614,"about_ca_topic_score_gemma":0.0000117222835,"teacher_disagreement_score":0.07935961,"about_ca_system_score_codex":0.000035580153,"about_ca_system_score_gemma":0.00007563826,"threshold_uncertainty_score":0.41963238},"labels":[],"label_agreement":null},{"id":"W2085812610","doi":"10.1016/j.jim.2006.02.019","title":"Isolation of neutrophils from mouse liver: A novel method to study effector leukocytes during inflammation","year":2006,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; Percoll; Chemokine; Molecular biology; Inflammation; Flow cytometry; Neutrophil elastase; Propidium iodide; Immunology; Centrifugation","score_opus":0.020306684689735472,"score_gpt":0.31914295883246707,"score_spread":0.2988362741427316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085812610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7337277,0.0019256256,0.2636158,0.000081371334,0.00026947854,0.00032489342,0.000005228351,0.00002432634,0.000025627096],"genre_scores_gemma":[0.69340473,0.00004504091,0.30632088,0.000010091053,0.00010073341,0.0000118115195,0.000010539789,0.000013368308,0.00008280767],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9950868,0.0029922635,0.0013426968,0.00021372507,0.000101621,0.00026290404],"domain_scores_gemma":[0.9966039,0.0016252471,0.0011005511,0.00027387618,0.00037476703,0.000021626356],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027175169,0.00023398826,0.0007387226,0.0004110217,0.00014345857,0.000026693675,0.00034636943,0.00031141363,0.00019219451],"category_scores_gemma":[0.0010241749,0.00017473045,0.00025544516,0.00030792324,0.000066855,0.00030549106,0.00013280872,0.00049739983,0.000039276518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00290717,0.0004179163,0.0009856588,0.000010772978,0.0003568783,0.000008467862,0.000496716,0.00036823252,0.95967263,0.0001122689,0.000008868171,0.03465442],"study_design_scores_gemma":[0.0022996564,0.0014229069,0.23830903,0.00004035824,0.000116088544,0.00006850095,0.0002557299,0.000024949844,0.7568409,0.0001681485,0.0003182182,0.00013551452],"about_ca_topic_score_codex":0.00019624784,"about_ca_topic_score_gemma":0.0000023180853,"teacher_disagreement_score":0.23732337,"about_ca_system_score_codex":0.00011093827,"about_ca_system_score_gemma":0.000043610642,"threshold_uncertainty_score":0.7125301},"labels":[],"label_agreement":null},{"id":"W2085901268","doi":"10.1006/cimm.2000.1619","title":"Increased Burn-Induced Immunosuppression in Lipopolysaccharide-Resistant Mice","year":2000,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique; Université de Montréal","funders":"","keywords":"Immunosuppression; Splenocyte; Immune system; Lipopolysaccharide; Burn injury; Oxidative stress; Spleen; Immunology; Strain (injury); Total body surface area; Inflammation; Ratón; Sepsis; Medicine; Saline; Biology; Endocrinology; Internal medicine","score_opus":0.007833801851283012,"score_gpt":0.2116783083814646,"score_spread":0.20384450653018157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085901268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.982317,0.01284046,0.000017532733,0.00037352456,0.00075962354,0.00038973897,0.000005334327,0.00014803947,0.0031487641],"genre_scores_gemma":[0.9944445,0.0005071912,0.000027141705,0.00013016241,0.000036965303,0.00006913935,0.00026174315,0.000041713432,0.0044814334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99688053,0.00093051995,0.0008168671,0.00051699113,0.000061234634,0.0007938733],"domain_scores_gemma":[0.99878424,0.00020935739,0.00017844996,0.00074976566,0.000052800307,0.000025364048],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005451888,0.00036546172,0.0005511709,0.0003969693,0.00026776007,0.000028215189,0.000567578,0.0007461591,0.00867619],"category_scores_gemma":[0.00010997652,0.00034971957,0.00017099734,0.00027527893,0.00022203485,0.00025335362,0.00011204532,0.0007500284,0.0051961113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002276468,0.00020165507,0.00012898585,0.000011395089,0.00013382352,0.00006384449,0.0004915473,0.0000044129433,0.9809955,0.00082109036,0.00017514266,0.014696132],"study_design_scores_gemma":[0.0030722576,0.0003033461,0.0047425195,0.00008452115,0.00003462218,0.0000962147,0.00022156257,0.000013084796,0.95379776,0.00028451512,0.036967237,0.00038235288],"about_ca_topic_score_codex":0.0017259808,"about_ca_topic_score_gemma":0.000041438925,"teacher_disagreement_score":0.036792096,"about_ca_system_score_codex":0.00013139225,"about_ca_system_score_gemma":0.00012684357,"threshold_uncertainty_score":0.99989545},"labels":[],"label_agreement":null},{"id":"W2085913728","doi":"10.1111/j.1365-2567.2007.02593.x","title":"Elevated expression of prostaglandin receptor and increased release of prostaglandin E<sub>2</sub> maintain the survival of CD45RO<sup>+</sup> T cells in the inflamed human pleural space","year":2007,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Prostaglandin; Prostaglandin E2; Receptor; Prostaglandin E; Expression (computer science); Internal medicine; Cancer research; Endocrinology; Cell biology; Biology; Chemistry; Medicine; Computer science","score_opus":0.008202928784087281,"score_gpt":0.2278277141075367,"score_spread":0.2196247853234494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085913728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974139,0.0010733352,0.00004950878,0.00024211197,0.00014356064,0.00094833557,0.00003728195,0.000022068503,0.00006991442],"genre_scores_gemma":[0.9994141,0.00021105786,0.000028458267,0.000026438853,0.000020369063,0.000036156718,0.0001802456,0.000021604055,0.000061582556],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99631804,0.0017757992,0.0010183257,0.0002816416,0.00010473823,0.0005014316],"domain_scores_gemma":[0.9974064,0.0011552641,0.0006791193,0.00058220775,0.00016070988,0.000016277281],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026330904,0.0002677205,0.00058548845,0.00034369176,0.0001629165,0.000008082835,0.0004285181,0.00045318805,0.00005809183],"category_scores_gemma":[0.0003937989,0.00017184555,0.000106249914,0.0003950127,0.0010014925,0.00011476606,0.0001684935,0.00056661037,0.000012319689],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048952308,0.00019666081,0.0072523067,0.000068019755,0.000106797306,0.000006317089,0.0038295286,0.000013502018,0.9808613,0.0018489185,0.000118764656,0.00080267363],"study_design_scores_gemma":[0.0034136435,0.000679672,0.053125583,0.0001335029,0.00003526693,0.000029086223,0.0034365933,0.000010182759,0.93806916,0.00019163942,0.0007163624,0.00015932121],"about_ca_topic_score_codex":0.00048160885,"about_ca_topic_score_gemma":0.000080569356,"teacher_disagreement_score":0.045873277,"about_ca_system_score_codex":0.000048616523,"about_ca_system_score_gemma":0.00010270834,"threshold_uncertainty_score":0.7007658},"labels":[],"label_agreement":null},{"id":"W2085937538","doi":"10.1111/j.1742-4658.2006.05444.x","title":"Characterization, localization and possible anti‐inflammatory function of rat histone H4 mRNA variants","year":2006,"lang":"en","type":"article","venue":"FEBS Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Creations of Advanced Catalytic Transformation for the Sustainable Manufacturing at Low Energy, Low Environmental Load","keywords":"Molecular biology; Histone H4; Open reading frame; Messenger RNA; Biology; Untranslated region; Complementary DNA; Transcription (linguistics); Histone; Peptide sequence; Gene; Biochemistry","score_opus":0.005075292760324044,"score_gpt":0.2048764707599665,"score_spread":0.19980117799964248,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2085937538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97663474,0.0013938064,0.02024511,0.0001262228,0.0011226747,0.00009902962,0.000003071383,0.000024733896,0.00035058195],"genre_scores_gemma":[0.9965602,0.00029509794,0.00002891434,0.00004299749,0.00012715644,0.000002171961,0.00019106458,0.000012541526,0.0027398206],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990238,0.00018631457,0.00046250471,0.00011082404,0.000049847422,0.00016673673],"domain_scores_gemma":[0.99927634,0.00002455088,0.00038525843,0.00010633504,0.0001933163,0.000014197914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035545864,0.00010889122,0.00018066065,0.00020052721,0.00028181038,0.00003117683,0.00006496086,0.00016651968,0.0003760017],"category_scores_gemma":[0.00003618321,0.000098585006,0.00004460836,0.00011956872,0.000090522655,0.0003966751,0.000019809358,0.00016755918,0.000061919796],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027317367,0.000045783763,0.008147979,0.000018957156,0.000042916014,0.0000039514266,0.00011947456,0.00005995317,0.9855911,0.00072972896,0.0016004578,0.003366517],"study_design_scores_gemma":[0.001970921,0.0002047194,0.545437,0.000100211524,0.00008429019,0.0005768052,0.00006495365,0.00013014664,0.41025218,0.00051203993,0.040468406,0.00019833026],"about_ca_topic_score_codex":0.000014057758,"about_ca_topic_score_gemma":0.0000027500357,"teacher_disagreement_score":0.5753389,"about_ca_system_score_codex":0.000038699218,"about_ca_system_score_gemma":0.00007773904,"threshold_uncertainty_score":0.41169548},"labels":[],"label_agreement":null},{"id":"W2086055309","doi":"10.1111/j.1600-6143.2008.02236.x","title":"RIP2 Is Required for NOD Signaling But Not for Th1 Cell Differentiation and Cellular Allograft Rejection","year":2008,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Robarts Clinical Trials","funders":"University of Pennsylvania","keywords":"Nod; Immunosuppression; Immunology; Signal transduction; Cell biology; Immune system; Cytokine; Medicine; Transplantation; Biology; Cancer research; In vivo; Internal medicine; Genetics","score_opus":0.012709306174550341,"score_gpt":0.2245938013185138,"score_spread":0.21188449514396346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086055309","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83392364,0.0002847174,0.16506538,0.00021541619,0.0002454901,0.00021665615,0.000028419567,0.000010200702,0.000010084129],"genre_scores_gemma":[0.9968559,0.0006909269,0.0019306696,0.00010175977,0.00006235432,0.000014761759,0.00016260351,0.000013844979,0.00016717843],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912107,0.000116608,0.00043601767,0.00012095415,0.000046910314,0.00015846608],"domain_scores_gemma":[0.998951,0.00025090214,0.0005375249,0.00006133184,0.00018229864,0.00001694745],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027484194,0.00011216256,0.00024364938,0.00017186334,0.00022797992,0.000011013364,0.00006354009,0.00007898448,0.000012200663],"category_scores_gemma":[0.000020768119,0.00010190751,0.00013496286,0.0000725744,0.00010496999,0.00022999448,0.0000022559404,0.000099194454,0.0000027894548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00349207,0.000033939043,0.00036987357,0.000057040696,0.00009967976,0.000002208176,0.0025591464,0.00002701321,0.98804253,0.00001904588,0.0001001826,0.0051972605],"study_design_scores_gemma":[0.0025986675,0.0013061214,0.0038129059,0.000044422468,0.00023057907,0.00021437013,0.00047124736,0.00008994417,0.9904061,0.00005768409,0.0006476632,0.0001203015],"about_ca_topic_score_codex":0.000029878836,"about_ca_topic_score_gemma":0.0000019034994,"teacher_disagreement_score":0.16313471,"about_ca_system_score_codex":0.000024379422,"about_ca_system_score_gemma":0.00004459147,"threshold_uncertainty_score":0.41556677},"labels":[],"label_agreement":null},{"id":"W2086421389","doi":"10.1016/j.vetimm.2008.10.298","title":"Strategies to link innate and adaptive immunity when designing vaccine adjuvants","year":2008,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Canada Research Chairs; Agriculture Funding Consortium; Bill and Melinda Gates Foundation","keywords":"Adjuvant; Biology; Acquired immune system; Pattern recognition receptor; Innate immune system; Immune system; Mannose receptor; Immunology; Antigen; Immunity; TLR7; Immunization; Pathogen-associated molecular pattern; Receptor; Antigen presentation; Vaccination; DNA vaccination; T cell; Toll-like receptor; Macrophage","score_opus":0.02851992808908588,"score_gpt":0.25117109634957385,"score_spread":0.22265116826048797,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086421389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9693319,0.026380979,0.0010512448,0.00084832293,0.0008748757,0.00046681784,0.000013025599,0.00018333808,0.0008494688],"genre_scores_gemma":[0.9933288,0.0038530307,0.0013246202,0.00039085324,0.000038618404,0.00010573731,0.000079366626,0.00004385129,0.0008351177],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99653953,0.0013102877,0.0006809118,0.0006280198,0.00004287771,0.0007983521],"domain_scores_gemma":[0.9986318,0.000338887,0.0002267781,0.0006031649,0.00015294999,0.00004647142],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006185117,0.0004974863,0.00077501213,0.00051760627,0.0010854191,0.00003080684,0.00037993316,0.00069167913,0.00017424698],"category_scores_gemma":[0.00015065976,0.00048117398,0.00007836692,0.00020825696,0.0008428274,0.00059887883,0.00068746414,0.00087436126,0.00036784238],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004435852,0.00007646339,0.00079407997,0.000017212473,0.00027954555,0.00030871577,0.006617084,0.0000026701657,0.96668833,0.0012824659,0.00022632761,0.019271243],"study_design_scores_gemma":[0.009756324,0.023281973,0.60488605,0.00023022073,0.00020684325,0.06407237,0.0090372395,0.000019360372,0.22398959,0.0035896332,0.058899466,0.002030934],"about_ca_topic_score_codex":0.00016932117,"about_ca_topic_score_gemma":0.00000541742,"teacher_disagreement_score":0.7426987,"about_ca_system_score_codex":0.000046184407,"about_ca_system_score_gemma":0.00012694472,"threshold_uncertainty_score":0.99976397},"labels":[],"label_agreement":null},{"id":"W2086460234","doi":"10.1007/s00441-010-1058-5","title":"Innate immunity of the liver microcirculation","year":2010,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Intravital microscopy; Microcirculation; Innate immune system; Inflammation; Biology; Immune system; Immunity; Transillumination; Pathology; Immunology; Medicine; Internal medicine","score_opus":0.07775317542425857,"score_gpt":0.37002815527476546,"score_spread":0.2922749798505069,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086460234","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028994638,0.99445885,0.0000018066867,0.000019644902,0.00025482906,0.00060373027,0.0000071741083,0.000008158322,0.001746349],"genre_scores_gemma":[0.0034594669,0.9876236,0.0000050616804,0.000001841096,0.000030133391,0.000026374635,0.000106298,0.000018175406,0.008729082],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975968,0.0014943468,0.00036111102,0.00019516601,0.00007152583,0.0002810398],"domain_scores_gemma":[0.9986825,0.00046206263,0.00018693855,0.0004982752,0.0001571117,0.000013130109],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013193897,0.0001628848,0.00052833726,0.00021267765,0.00037426886,0.00001965696,0.00039812777,0.0007136038,0.0002555652],"category_scores_gemma":[0.00012615454,0.00010190592,0.00013501392,0.00031523313,0.00049572426,0.000049425635,0.000344337,0.0015839598,0.0004145203],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000011472642,0.00003408174,0.000002174137,0.0035041685,0.000039683535,0.000001207649,0.00024692251,1.5712839e-8,0.05625842,0.00018446894,0.00038057895,0.9393368],"study_design_scores_gemma":[0.00013094032,0.00003798486,0.00005968261,0.001132829,0.000069317175,0.000039895192,0.000027824226,2.0285233e-7,0.047899224,0.000040081708,0.950466,0.00009603436],"about_ca_topic_score_codex":0.00016489078,"about_ca_topic_score_gemma":0.000005931367,"teacher_disagreement_score":0.9500854,"about_ca_system_score_codex":0.000027983959,"about_ca_system_score_gemma":0.00025039815,"threshold_uncertainty_score":0.6881605},"labels":[],"label_agreement":null},{"id":"W2086610416","doi":"10.1002/jnr.20482","title":"Microglia and multiple sclerosis","year":2005,"lang":"en","type":"review","venue":"Journal of Neuroscience Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":189,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Neurological Institute and Hospital","funders":"Canadian Institutes of Health Research; Multiple Sclerosis Society of Canada","keywords":"Microglia; Innate immune system; Immune system; Neuroscience; Neuroinflammation; Multiple sclerosis; Biology; Pattern recognition receptor; Immunology; Neuroimmunology; Central nervous system; Inflammation","score_opus":0.3115814032779392,"score_gpt":0.43047393672597895,"score_spread":0.11889253344803974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086610416","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014970152,0.99744165,0.000006148605,0.00013217324,0.0005955247,0.0002363095,0.000004481358,0.0000058092414,0.00008091103],"genre_scores_gemma":[0.0006111482,0.99770015,0.000034900677,0.000020046486,0.000110763554,0.0000035623848,0.0000021189217,0.00001796875,0.0014993472],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968819,0.0013932635,0.0007635485,0.00025267858,0.00020321769,0.0005053967],"domain_scores_gemma":[0.9979978,0.0009207288,0.00047645974,0.00024714193,0.00030496911,0.000052855943],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0033941916,0.0001878529,0.00082552456,0.0009863558,0.00035463084,0.00010538477,0.0006998218,0.0003034048,0.000038283437],"category_scores_gemma":[0.0017282875,0.00013022464,0.00025285623,0.00060219155,0.0006863893,0.00029594867,0.000244141,0.0016463309,0.00016025956],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000033613098,0.00004636071,0.0000028219965,0.00039865792,0.000015832991,0.000019124744,0.000045263056,2.3315506e-7,0.07877169,0.000011618562,0.0017043671,0.91895044],"study_design_scores_gemma":[0.00025685976,0.00030711674,0.00008338758,0.002611288,0.000047296202,0.0014745748,0.000021654192,0.0000012616639,0.0012970468,0.000004417753,0.9937879,0.00010723236],"about_ca_topic_score_codex":0.0000049770683,"about_ca_topic_score_gemma":6.912685e-7,"teacher_disagreement_score":0.9920835,"about_ca_system_score_codex":0.000095008,"about_ca_system_score_gemma":0.0006015281,"threshold_uncertainty_score":0.715258},"labels":[],"label_agreement":null},{"id":"W2086853614","doi":"10.1016/s1081-1206(10)60472-3","title":"Association of polymorphisms of toll-like receptor 4 with a reduced prevalence of hay fever and atopy","year":2008,"lang":"en","type":"article","venue":"Annals of Allergy Asthma & Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Alberta","funders":"National Institutes of Health","keywords":"Hay fever; Atopy; Medicine; Immunology; Asthma; TLR4; Odds ratio; Genotype; Toll-like receptor; Allergy; Immune system; Innate immune system; Biology; Internal medicine; Genetics; Gene","score_opus":0.01448812723648537,"score_gpt":0.23008278049630493,"score_spread":0.21559465325981955,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2086853614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873337,0.0114208,0.000030265677,0.0005829167,0.0001860703,0.00016413268,0.000026894086,0.000014041089,0.00024117864],"genre_scores_gemma":[0.98802084,0.007787887,0.0001768553,0.000037605394,0.000007745965,0.000009981239,0.00003632566,0.000015005354,0.003907779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982143,0.00041419017,0.0007672929,0.00022621047,0.00008696503,0.00029104945],"domain_scores_gemma":[0.9976847,0.00022284931,0.0011997207,0.00035830526,0.00052166474,0.000012771489],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039957982,0.00018525685,0.00062509615,0.00023698574,0.00006968083,0.0000011517491,0.00022863295,0.0004065207,0.00039622022],"category_scores_gemma":[0.00017033292,0.00016656941,0.00012253407,0.00019171236,0.00067000074,0.00016780954,0.00008772869,0.00018191362,0.000013426142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023654124,0.00025744174,0.0015794317,0.00007345199,0.0015375846,0.0000016644007,0.0016212511,0.000007518802,0.98876625,0.0010828141,0.0012832887,0.0014238709],"study_design_scores_gemma":[0.001264457,0.0012589457,0.1537662,0.00012261071,0.000008033904,0.00006751751,0.00012733774,9.4181775e-7,0.8304776,0.00003622715,0.012743874,0.00012628497],"about_ca_topic_score_codex":0.00018816872,"about_ca_topic_score_gemma":0.00000900895,"teacher_disagreement_score":0.1582887,"about_ca_system_score_codex":0.000015463107,"about_ca_system_score_gemma":0.0001552543,"threshold_uncertainty_score":0.67925036},"labels":[],"label_agreement":null},{"id":"W2087098495","doi":"10.1097/md.0b013e3181fd8ec3","title":"Clinical Features and Outcome of Patients With IRAK-4 and MyD88 Deficiency","year":2010,"lang":"en","type":"article","venue":"Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":428,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Toronto; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; Wellcome Trust; Howard Hughes Medical Institute","keywords":"Medicine; Staphylococcus aureus; Internal medicine; Immunology; Antibiotics; Pseudomonas aeruginosa; Respiratory tract infections; Gastroenterology; Respiratory system; Microbiology","score_opus":0.009964149488091574,"score_gpt":0.2811765719944211,"score_spread":0.2712124225063295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087098495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99745023,0.0010687141,0.000015314909,0.00050531543,0.00031112987,0.00009469601,0.0000017185639,0.000009173907,0.0005437254],"genre_scores_gemma":[0.9993157,0.000055808538,0.000048980473,0.00010577532,0.000019248255,0.0000014254825,0.00002290091,0.000003725247,0.00042648648],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9994929,0.000053055785,0.0002339721,0.00010538371,0.000025362553,0.0000893583],"domain_scores_gemma":[0.99958575,0.00014291547,0.000088235094,0.000120174904,0.000050665134,0.000012286218],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003211625,0.000064989246,0.00019537927,0.000052772182,0.00004569495,0.000001360359,0.00004425581,0.000112382695,0.000101197445],"category_scores_gemma":[0.00028015077,0.000037099628,0.000010403995,0.00004139423,0.0004968153,0.000033906425,0.00002480845,0.00020791974,0.0000059615872],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030872153,0.000042476764,0.95151836,0.000018991972,0.00001866214,6.279253e-7,0.00027492398,1.5093876e-8,0.028112894,0.00051114603,0.00065227447,0.018540889],"study_design_scores_gemma":[0.0020647054,0.000577225,0.9878887,0.000018733272,0.00003103378,0.000012642105,0.00005752377,2.528095e-7,0.0019459702,0.000030665808,0.0073277107,0.00004485202],"about_ca_topic_score_codex":0.000028003737,"about_ca_topic_score_gemma":0.000015490112,"teacher_disagreement_score":0.036370307,"about_ca_system_score_codex":0.0000012207369,"about_ca_system_score_gemma":0.000008335006,"threshold_uncertainty_score":0.18305367},"labels":[],"label_agreement":null},{"id":"W2087130689","doi":"10.1016/j.molimm.2009.02.008","title":"Synergistic BM-DC activation and immune induction by the oral vaccine vector Streptococcus gordonii and exogenous tumor necrosis factor","year":2009,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Streptococcus gordonii; Tumor necrosis factor alpha; Immune system; Immunology; Cancer research; Medicine; Biology; Streptococcus; Bacteria; Genetics","score_opus":0.00605269091848192,"score_gpt":0.21332822196504297,"score_spread":0.20727553104656105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087130689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98624766,0.009686646,0.0009328354,0.0021225896,0.0003071838,0.0005279892,0.000011761404,0.000086692904,0.00007663631],"genre_scores_gemma":[0.99877506,0.00022402193,0.000022765376,0.00034066383,0.000016512438,0.000050988758,0.00017849785,0.00002283034,0.00036866972],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982361,0.00047873988,0.00042149218,0.0003835676,0.0000471348,0.0004329572],"domain_scores_gemma":[0.9991128,0.000121511286,0.00023587965,0.0004239836,0.00008615491,0.00001966101],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020643532,0.00029850105,0.00037224067,0.0001436174,0.00043282463,0.000053024058,0.00019764778,0.00032020858,0.0001348104],"category_scores_gemma":[0.00019767373,0.00023562688,0.000071083574,0.00018603154,0.00020884945,0.00018579864,0.000093027666,0.00044038225,0.000051688152],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043364597,0.000074246134,0.00009175751,0.0000065196564,0.00020242551,0.0000062517884,0.000338068,0.0000017765336,0.96435696,0.0008022251,0.00021383534,0.033472273],"study_design_scores_gemma":[0.001571498,0.0007272469,0.069676526,0.000022141123,0.000066912806,0.00015417564,0.00017739703,0.000009228569,0.9218618,0.00033164263,0.0051444815,0.00025690536],"about_ca_topic_score_codex":0.00024393384,"about_ca_topic_score_gemma":0.0000057235497,"teacher_disagreement_score":0.06958477,"about_ca_system_score_codex":0.00006899917,"about_ca_system_score_gemma":0.00004780935,"threshold_uncertainty_score":0.9608585},"labels":[],"label_agreement":null},{"id":"W2087226517","doi":"10.2353/ajpath.2007.061043","title":"Neutrophil Elastase Converts Human Immature Dendritic Cells into Transforming Growth Factor-β1-Secreting Cells and Reduces Allostimulatory Ability","year":2007,"lang":"en","type":"article","venue":"American Journal Of Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Agencia Nacional de Promoción Científica y Tecnológica; National Institutes of Health; National Institute of Dental and Craniofacial Research; Secretaría de Ciencia y Técnica, Universidad de Buenos Aires; Fundación Florencio Fiorini","keywords":"Elastase; Immunology; Neutrophil elastase; Biology; Cell biology; Dendritic cell; Transforming growth factor; Growth factor; Inflammation; Immune system; Receptor; Enzyme; Biochemistry","score_opus":0.00556892603735479,"score_gpt":0.24139499023747754,"score_spread":0.23582606420012275,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087226517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968504,0.0013956748,0.00079599704,0.00016622033,0.0005656248,0.00012902929,0.0000073730207,0.000019666884,0.0000700312],"genre_scores_gemma":[0.9990053,0.00018853793,0.00049784424,0.00017298524,0.00007998223,0.0000012243378,0.000008211912,0.000021466183,0.000024407427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99779373,0.00058199186,0.00085980573,0.00024421225,0.00006622267,0.00045401693],"domain_scores_gemma":[0.9984151,0.0004692418,0.0006650537,0.00016403427,0.00021416004,0.000072418334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011114379,0.00023831936,0.00059315294,0.00029570144,0.00025219907,0.000015597709,0.00020838442,0.00022293777,0.00008190508],"category_scores_gemma":[0.00009443657,0.00020956695,0.00015847651,0.0001415731,0.0010069147,0.00022011787,0.00004275696,0.00070798397,0.000017651206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007409169,0.000058996633,0.0007481788,0.000028096403,0.00008149045,0.00032108426,0.0039156773,0.000003989459,0.9825131,0.00007328321,0.000029319484,0.011485809],"study_design_scores_gemma":[0.0011316178,0.0015289001,0.01704219,0.000062304316,0.00008001106,0.0017819266,0.0030130097,0.0000013989901,0.9743334,0.00021988738,0.0005696016,0.0002357458],"about_ca_topic_score_codex":0.000045523004,"about_ca_topic_score_gemma":0.000006224868,"teacher_disagreement_score":0.016294012,"about_ca_system_score_codex":0.000073995085,"about_ca_system_score_gemma":0.00008506517,"threshold_uncertainty_score":0.8545892},"labels":[],"label_agreement":null},{"id":"W2087495866","doi":"10.1038/sj.cdd.4401890","title":"TIR, CARD and PYRIN: three domains for an antimicrobial triad","year":2006,"lang":"en","type":"review","venue":"Cell Death and Differentiation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":151,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Pyrin domain; Innate immune system; NOD2; Cell biology; Inflammasome; Biology; NOD1; NALP3; G protein-coupled receptor; Receptor; Intracellular; Signal transduction; Nod; TLR4; Genetics; Gene","score_opus":0.03366502483937963,"score_gpt":0.278256293776886,"score_spread":0.24459126893750635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2087495866","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022591798,0.9736376,0.0015133136,0.0000071463437,0.0005734096,0.0012078681,0.00011106741,0.000052827912,0.0003049653],"genre_scores_gemma":[0.005020373,0.9864197,0.00007400657,0.000013166455,0.00014139079,0.000103909086,0.006915745,0.00004096051,0.0012707507],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99858487,0.00019823253,0.00048982847,0.0004067792,0.000026777725,0.00029350503],"domain_scores_gemma":[0.99921983,0.0001494809,0.00031978879,0.0002374125,0.000046170135,0.000027335056],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001892324,0.00035866452,0.00089756533,0.00020385225,0.00027089825,0.00007534999,0.00010381323,0.0006504273,0.00001733089],"category_scores_gemma":[0.000019582929,0.00029302304,0.00021003891,0.00005654315,0.000059125217,0.00013577989,0.000049665152,0.0001947326,0.000027421855],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002294135,0.00014094393,0.00009409088,0.006473108,0.00020926015,0.0000010909055,0.0000863612,2.0687598e-7,0.0054775695,0.0007870419,0.0018958878,0.984605],"study_design_scores_gemma":[0.0023961558,0.00029097594,0.00086133473,0.0007051179,0.0014027983,0.000037545145,0.0000073226674,0.000014475057,0.0019368043,0.00019655365,0.99165505,0.0004958658],"about_ca_topic_score_codex":0.000046977297,"about_ca_topic_score_gemma":0.00003350331,"teacher_disagreement_score":0.98975915,"about_ca_system_score_codex":0.000033600543,"about_ca_system_score_gemma":0.00006962443,"threshold_uncertainty_score":0.9999522},"labels":[],"label_agreement":null},{"id":"W2088264170","doi":"10.2460/javma.233.4.565","title":"Issues regarding the use of vancomycin in companion animals","year":2008,"lang":"en","type":"article","venue":"Journal of the American Veterinary Medical Association","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Vancomycin; Medicine; Intensive care medicine; Biology; Staphylococcus aureus; Genetics; Bacteria","score_opus":0.053607731544251476,"score_gpt":0.29788551870885366,"score_spread":0.2442777871646022,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088264170","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936853,0.0005410673,0.000038650178,0.005185114,0.00044919757,0.00006693608,0.0000011700715,0.000004240107,0.000028301043],"genre_scores_gemma":[0.9985867,0.00072607654,0.00007024145,0.00022968053,0.00006845982,0.0000012531143,9.77991e-7,0.0000051143775,0.00031150845],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977465,0.0012672611,0.0005752224,0.00005554406,0.00021314224,0.00014228426],"domain_scores_gemma":[0.99757415,0.0007593024,0.001395913,0.0001265047,0.00013244041,0.00001166795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013755746,0.0000717284,0.00032115955,0.00007952411,0.00010563959,0.0000051527904,0.00026222641,0.00008301597,0.000055522087],"category_scores_gemma":[0.0019509328,0.000039690938,0.00013896423,0.00023587071,0.00019199603,0.00014337723,0.00007279868,0.00042140044,0.000010293208],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002567962,0.00029780588,0.22424152,0.000020560106,0.0004775826,0.00008565056,0.003660732,0.00015489616,0.7139466,0.00008784432,0.03223744,0.022221444],"study_design_scores_gemma":[0.0010292933,0.00092463096,0.8773655,0.00018752394,0.000031590676,0.0009469911,0.0003982109,0.00006250283,0.0147084575,0.000030364223,0.104230784,0.00008410938],"about_ca_topic_score_codex":0.00014842027,"about_ca_topic_score_gemma":0.0000049178007,"teacher_disagreement_score":0.6992381,"about_ca_system_score_codex":0.00014956438,"about_ca_system_score_gemma":0.00009281189,"threshold_uncertainty_score":0.23355897},"labels":[],"label_agreement":null},{"id":"W2088335856","doi":"10.1371/journal.pone.0048468","title":"Anti-Inflammatory Activity of a Novel Family of Aryl Ureas Compounds in an Endotoxin-Induced Airway Epithelial Cell Injury Model","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"Instituto de Salud Carlos III; Agencia Canaria de Investigación, Innovación y Sociedad de la Información; Fundación Canaria de Investigación y Salud","keywords":"TLR4; ARDS; Lipopolysaccharide; Pharmacology; A549 cell; Cytokine; Tumor necrosis factor alpha; Chemistry; Cell culture; In vitro; Medicine; Immunology; Receptor; Biology; Biochemistry; Lung; Internal medicine","score_opus":0.045837157030946166,"score_gpt":0.24553807677371184,"score_spread":0.19970091974276566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088335856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984109,0.00026836,0.00010073907,0.00002104648,0.00008703161,0.000342801,0.000054851156,0.000030612577,0.0006836507],"genre_scores_gemma":[0.9993914,0.000044935856,0.00025625803,0.000019600717,0.000030082665,0.000023229266,0.000041339976,0.000021422717,0.00017178325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987678,0.00013989724,0.00047045335,0.0001778179,0.00008733183,0.0003566855],"domain_scores_gemma":[0.9990589,0.0001005982,0.000314491,0.00039231384,0.000105047184,0.00002864423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005043365,0.00018172218,0.00052894594,0.00024999463,0.000050968214,0.000003632419,0.00020657021,0.00030737725,0.00003252365],"category_scores_gemma":[0.00004947556,0.00018166176,0.000082106046,0.00012918162,0.000118322794,0.0004322275,0.00007620284,0.00031147897,0.000041738647],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001043215,0.005209019,0.005380362,0.000113752445,0.000119469245,3.6295663e-7,0.0010279346,0.00001576469,0.9865963,0.0001269346,0.00001267779,0.00035422092],"study_design_scores_gemma":[0.0016837491,0.00025384748,0.036795836,0.00009090697,0.0000635591,0.0000015021815,0.00007568926,0.0006132749,0.96023077,0.000010094453,0.000010228616,0.00017056176],"about_ca_topic_score_codex":0.000089113455,"about_ca_topic_score_gemma":0.000007836013,"teacher_disagreement_score":0.031415474,"about_ca_system_score_codex":0.000044791374,"about_ca_system_score_gemma":0.00012866504,"threshold_uncertainty_score":0.74079514},"labels":[],"label_agreement":null},{"id":"W2088373175","doi":"10.1001/archsurg.135.8.959","title":"Decreased Systemic Polymorphonuclear Neutrophil (PMN) Rolling Without Increased PMN Adhesion in Peritonitis at Remote Sites","year":2000,"lang":"en","type":"article","venue":"Archives of Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital","funders":"","keywords":"Medicine; Peritonitis; Adhesion; Polymorphonuclear leukocyte; Neutrophile; Granulocyte; Surgery; Immunology; Inflammation; In vitro; Biochemistry; Composite material","score_opus":0.014168300432062101,"score_gpt":0.21256306923741086,"score_spread":0.19839476880534876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088373175","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944062,0.0040821508,0.000006921036,0.00009147277,0.00011408207,0.00019032042,0.00001694306,0.00006307121,0.0010288242],"genre_scores_gemma":[0.9967853,0.0017921922,0.000105984065,0.000058277143,0.000029955963,0.00000625514,0.00024152546,0.00003118256,0.0009493325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794567,0.00067153556,0.0006447311,0.00028931774,0.00005556854,0.00039320407],"domain_scores_gemma":[0.99821466,0.0011892015,0.00019427437,0.00034707182,0.000019506786,0.000035274934],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003315274,0.00021125597,0.00053607573,0.00041329663,0.00016401254,0.0000107119495,0.00015799626,0.0001543904,0.0008770133],"category_scores_gemma":[0.00013773625,0.00020397818,0.0002229256,0.00016212992,0.00021173153,0.00014442114,0.00005523381,0.00020139125,0.00039565994],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003737291,0.00006187475,0.054199085,0.00007027809,0.00005874024,0.000035600366,0.0006838984,0.000024570298,0.91565263,0.00001031935,0.00007580377,0.025389913],"study_design_scores_gemma":[0.0018866634,0.000118362776,0.35403952,0.0013065375,0.000052497533,0.0004889196,0.0002126476,0.0004268939,0.638718,0.0001017647,0.002207243,0.00044094413],"about_ca_topic_score_codex":0.0015437619,"about_ca_topic_score_gemma":0.000036009398,"teacher_disagreement_score":0.29984042,"about_ca_system_score_codex":0.000034635894,"about_ca_system_score_gemma":0.00009678675,"threshold_uncertainty_score":0.9602681},"labels":[],"label_agreement":null},{"id":"W2088480241","doi":"10.1016/j.vaccine.2004.03.035","title":"Protollin™: a novel adjuvant for intranasal vaccines","year":2004,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SNC-Lavalin (Canada)","funders":"","keywords":"Adjuvant; Nasal administration; Immunization; Hemagglutinin (influenza); Antigen; Immunology; Splenocyte; Influenza vaccine; Virology; Vaccination; Medicine; Virus; Influenza A virus; Recombinant DNA; Biology","score_opus":0.011760413497190605,"score_gpt":0.24589497765530047,"score_spread":0.23413456415810985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088480241","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9598979,0.00207424,0.02994194,0.0047960994,0.00082497095,0.0020279936,0.000025510335,0.00018284947,0.0002285315],"genre_scores_gemma":[0.9966668,0.00006036111,0.0009641655,0.00020257218,0.00011137823,0.00032343608,0.00018971165,0.000022415828,0.0014591892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992284,0.000019669817,0.00028071366,0.00018536756,0.00001727293,0.00026855944],"domain_scores_gemma":[0.99955845,0.00005796064,0.00008099559,0.00020000876,0.00009015608,0.00001241906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001777453,0.00013674556,0.00021888378,0.00010260365,0.0001318107,0.000010044163,0.00013334338,0.00014976984,0.00016704485],"category_scores_gemma":[0.00009471506,0.000109408546,0.00008464172,0.00010782777,0.0000062907566,0.00011055018,0.000024907577,0.00010934253,0.00022707185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00149053,0.00015124565,0.00015559864,0.000035642417,0.00010264135,0.0000013241001,0.00022694,0.00006909812,0.9860376,0.00391738,0.0016971936,0.006114821],"study_design_scores_gemma":[0.011667936,0.00052427157,0.0058546313,0.000054641903,0.00004729373,0.000084223815,0.00006986768,0.000016537555,0.83205044,0.0008409012,0.14857571,0.00021352098],"about_ca_topic_score_codex":0.00004045366,"about_ca_topic_score_gemma":0.000026295882,"teacher_disagreement_score":0.15398712,"about_ca_system_score_codex":0.000031377363,"about_ca_system_score_gemma":0.000071233226,"threshold_uncertainty_score":0.4461551},"labels":[],"label_agreement":null},{"id":"W2088672001","doi":"10.1002/art.23967","title":"Toll‐like receptor 2 variants are associated with acute reactive arthritis","year":2008,"lang":"en","type":"article","venue":"Arthritis & Rheumatism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; Ministry of Health and Long Term Care; University of Toronto; Western University; University Health Network","funders":"","keywords":"Medicine; Genotyping; Single-nucleotide polymorphism; Arthritis; Cohort; Internal medicine; Salmonella infection; Immunology; Genotype; Salmonella; Reactive arthritis; Outbreak; Pathology; Biology; Gene; Genetics","score_opus":0.00819583940299651,"score_gpt":0.19853872835727907,"score_spread":0.19034288895428256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088672001","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98573434,0.009506556,0.0002130086,0.00045153152,0.00085946836,0.00044117824,0.00012765589,0.0002808412,0.002385399],"genre_scores_gemma":[0.97800756,0.016775701,0.00020358874,0.00020934932,0.000021195678,0.00010229151,0.00063641934,0.00005036537,0.0039935145],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977979,0.00044669205,0.000558312,0.0004525527,0.000121158795,0.00062339345],"domain_scores_gemma":[0.9986334,0.0002514996,0.0004337506,0.00043368054,0.00019869281,0.000049009534],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00029157763,0.00033879295,0.00061457814,0.00017347762,0.0007247166,0.000033949804,0.00022185317,0.00040246945,0.0017526642],"category_scores_gemma":[0.0002089246,0.000323871,0.00011904806,0.0002727952,0.00037203718,0.0006307358,0.00007073071,0.00046077603,0.0022337055],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026328966,0.0012139899,0.009289962,0.000024141276,0.0052299933,0.002340366,0.014015116,0.000013210086,0.47318467,0.003431677,0.15992668,0.32869726],"study_design_scores_gemma":[0.03817335,0.0038108344,0.5418596,0.01009055,0.00022306891,0.020481648,0.002303876,0.000029865556,0.26176062,0.0011580384,0.11642893,0.0036795621],"about_ca_topic_score_codex":0.00023013992,"about_ca_topic_score_gemma":0.00032584878,"teacher_disagreement_score":0.5325697,"about_ca_system_score_codex":0.000096986674,"about_ca_system_score_gemma":0.00016239574,"threshold_uncertainty_score":0.9999213},"labels":[],"label_agreement":null},{"id":"W2088741862","doi":"10.1016/j.it.2015.03.005","title":"Alveolar macrophages and type I IFN in airway homeostasis and immunity","year":2015,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":121,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Christie (Canada)","funders":"Canadian Institutes of Health Research","keywords":"Immunology; Immune system; Biology; Immunity; Macrophage; Inflammation; Homeostasis; Cell biology","score_opus":0.04257601693322746,"score_gpt":0.33207626696318854,"score_spread":0.28950025002996105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088741862","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01600478,0.98210835,4.7325383e-7,0.000058608817,0.00067581644,0.0002626838,0.000028199545,0.000046754627,0.0008143501],"genre_scores_gemma":[0.0025738801,0.99428463,0.00002680764,0.000015185601,0.00001673493,0.00006325281,0.0006321353,0.00004929716,0.0023380653],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961378,0.0017636734,0.00092804467,0.0005284698,0.000036913712,0.00060508813],"domain_scores_gemma":[0.9986298,0.00036219863,0.00033132435,0.0005945326,0.000059596005,0.000022562579],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00095997885,0.0005541152,0.0020825549,0.0017956286,0.000104500774,0.0000247802,0.00036527406,0.0014515569,0.0003783806],"category_scores_gemma":[0.00018427694,0.0004898693,0.00012727533,0.00085253327,0.00057499594,0.000158387,0.00045095768,0.0014647567,0.00026390897],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001956644,0.00007282709,0.00004068926,0.0004951056,0.00026416022,0.000037563295,0.000488692,9.429302e-8,0.00022827512,0.0001755298,0.000330057,0.99767137],"study_design_scores_gemma":[0.0015094599,0.00037814205,0.0017010836,0.0012987987,0.00018934323,0.0005216484,0.00017551845,2.9800606e-7,0.00012620605,0.000077746576,0.9935456,0.00047619242],"about_ca_topic_score_codex":0.00045170463,"about_ca_topic_score_gemma":0.0001786709,"teacher_disagreement_score":0.9971951,"about_ca_system_score_codex":0.00017569023,"about_ca_system_score_gemma":0.00019209953,"threshold_uncertainty_score":0.9998448},"labels":[],"label_agreement":null},{"id":"W2088940517","doi":"10.1111/j.1574-695x.2006.00077.x","title":"Role of SLC11A1 (formerly NRAMP1) in regulation of signal transduction induced by Toll-like receptor 7 ligands","year":2006,"lang":"en","type":"article","venue":"FEMS Immunology & Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Notre-Dame; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Signal transduction; Toll-like receptor; Receptor; Cell biology; Transduction (biophysics); Toll; Genetics; Biochemistry; Innate immune system","score_opus":0.003839558222077721,"score_gpt":0.20193637833613326,"score_spread":0.19809682011405555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2088940517","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915175,0.006024625,0.00014523519,0.0005850793,0.0009652387,0.00036106803,0.000052830554,0.000045857425,0.00030257617],"genre_scores_gemma":[0.99712104,0.00019707403,0.00004832758,0.000064176944,0.000051060942,0.000036094927,0.0018746986,0.000024883579,0.0005826386],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99641967,0.00073367445,0.0017130814,0.0004630374,0.00007129871,0.0005992584],"domain_scores_gemma":[0.99841547,0.00033637742,0.0006655532,0.0003917743,0.00016759636,0.000023199007],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010986797,0.00031874777,0.00093963224,0.00047573325,0.00009219492,0.0000039080896,0.0004585588,0.0018699483,0.0035208517],"category_scores_gemma":[0.00016419185,0.00029170798,0.00020478226,0.00038537884,0.0009688778,0.00014704003,0.00007683352,0.00075859454,0.00017558118],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012744002,0.00038361314,0.0008224598,0.000021013851,0.00018344683,9.825205e-7,0.0004210783,0.0000032540274,0.97852474,0.0006196483,0.0018189449,0.01592639],"study_design_scores_gemma":[0.0029197964,0.00091316825,0.013510459,0.00008792979,0.000033588283,0.00016839334,0.00029624673,0.000006246651,0.95640934,0.00037788443,0.025042135,0.00023480882],"about_ca_topic_score_codex":0.0010786022,"about_ca_topic_score_gemma":0.00012800666,"teacher_disagreement_score":0.023223191,"about_ca_system_score_codex":0.00009570343,"about_ca_system_score_gemma":0.0002439701,"threshold_uncertainty_score":0.9999535},"labels":[],"label_agreement":null},{"id":"W2089060011","doi":"10.1371/journal.pone.0005601","title":"Lipoteichoic Acid Induces Unique Inflammatory Responses when Compared to Other Toll-Like Receptor 2 Ligands","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Heritage Foundation for Medical Research","keywords":"Lipoteichoic acid; TLR2; In vivo; Cell biology; Biology; Receptor; Toll-like receptor; Ligand (biochemistry); Signal transduction; Stimulation; TLR4; Innate immune system; Biochemistry; Neuroscience; Genetics","score_opus":0.031862956251094664,"score_gpt":0.23688540392839022,"score_spread":0.20502244767729555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089060011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936964,0.0012665115,0.000031584066,0.0027888624,0.00018970863,0.0005011684,0.000015163641,0.00023782192,0.0012728057],"genre_scores_gemma":[0.9836303,0.000082773695,0.00057726144,0.0017433976,0.0001091131,0.00005694386,0.00007373946,0.0000285917,0.013697854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837583,0.00034490795,0.00045278054,0.0003162455,0.000092519294,0.0004177163],"domain_scores_gemma":[0.9990252,0.00014823226,0.0001437479,0.0004915901,0.00014028586,0.000050912215],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044241478,0.00024708817,0.00042013254,0.00030940314,0.00020723758,0.000039934184,0.00033229205,0.00035029944,0.00082333153],"category_scores_gemma":[0.00028075566,0.00023517423,0.00007738651,0.0001750528,0.00007603421,0.00022549416,0.000062304774,0.00033497054,0.0029859075],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020555132,0.00042773687,0.0003901305,0.000016488426,0.00025694518,0.0000033231854,0.0018346022,0.0000011018715,0.9872822,0.00017636464,0.005816365,0.001739203],"study_design_scores_gemma":[0.00083628553,0.00045082587,0.005141468,0.00023049203,0.000055645894,0.0000068079335,0.00012437579,0.0000014896242,0.9522558,0.00014069765,0.04046642,0.000289728],"about_ca_topic_score_codex":0.00002164943,"about_ca_topic_score_gemma":0.000014843571,"teacher_disagreement_score":0.035026465,"about_ca_system_score_codex":0.00007510838,"about_ca_system_score_gemma":0.00011913026,"threshold_uncertainty_score":0.9977904},"labels":[],"label_agreement":null},{"id":"W2089128705","doi":"10.1016/j.surg.2004.05.029","title":"The role of the Src family of tyrosine kinases after oxidant-induced lung injury in vivo","year":2004,"lang":"en","type":"article","venue":"Surgery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Resuscitation; In vivo; Lipopolysaccharide; Proto-oncogene tyrosine-protein kinase Src; Kinase; Western blot; Pharmacology; Lung; Shock (circulatory); Ex vivo; Immunology; Internal medicine; Endocrinology; Anesthesia; Biology; Cell biology; Receptor; Biochemistry","score_opus":0.005817533884912157,"score_gpt":0.20869510056547164,"score_spread":0.20287756668055948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089128705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935356,0.0054749455,0.0000011303639,0.00017233766,0.00041896,0.00011427382,0.000007735919,0.000008088594,0.00026696743],"genre_scores_gemma":[0.999544,0.00020451206,0.0000013652035,0.000042577267,0.0000104966975,0.000017145881,0.0000031653005,0.000006994677,0.0001697423],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914587,0.00019924292,0.00035361518,0.00008611577,0.00003495025,0.00018018157],"domain_scores_gemma":[0.9992214,0.00029910475,0.00015190305,0.00027606447,0.000047354435,0.00000420404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004253891,0.00008323023,0.00018877065,0.00008374035,0.00006547102,0.000003882986,0.0001216046,0.00011148003,0.0000377771],"category_scores_gemma":[0.00016810159,0.0000491538,0.0001201305,0.00017810574,0.00012926196,0.00006321045,0.000055023225,0.00012263795,0.000015017911],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052832504,0.000043417735,0.01182359,0.000009683352,0.00002973518,0.0000011363538,0.00020771872,0.0000024567812,0.9832917,0.00027987006,0.00019984267,0.0035825525],"study_design_scores_gemma":[0.00015850672,0.00001711889,0.13952321,0.00009272911,0.0000084067,0.0000037722673,0.00014748189,3.6603538e-7,0.8565822,0.00020638003,0.0032100324,0.000049801933],"about_ca_topic_score_codex":0.00026046907,"about_ca_topic_score_gemma":0.000029674346,"teacher_disagreement_score":0.12769961,"about_ca_system_score_codex":0.000025868783,"about_ca_system_score_gemma":0.00013133317,"threshold_uncertainty_score":0.20044339},"labels":[],"label_agreement":null},{"id":"W2089353762","doi":"10.1080/08982100802129232","title":"Structural Characterization of Archaeal Lipid Mucosal Vaccine Adjuvant and Delivery (AMVAD) Formulations Prepared by Different Protocols and Their Efficacy Upon Intranasal Immunization of Mice","year":2008,"lang":"en","type":"article","venue":"Journal of Liposome Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Ovalbumin; Nasal administration; Adjuvant; Liposome; Immunization; Antigen; Immunopotentiator; Antibody; Immune system; Chemistry; Biology; Microbiology; Immunology; Biochemistry","score_opus":0.03560153983244922,"score_gpt":0.3048143447436766,"score_spread":0.26921280491122734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089353762","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967683,0.0009438798,0.00019356699,0.00021911999,0.000062404746,0.0017753327,0.000026555028,0.0000057206516,0.000005108423],"genre_scores_gemma":[0.99823934,0.0014493205,0.000032244585,0.0000029175417,0.000047270456,0.00004051991,0.00012783804,0.000012704151,0.000047841284],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980953,0.00062675023,0.00078314834,0.00012285862,0.00014327414,0.00022870944],"domain_scores_gemma":[0.99822724,0.0003813209,0.00050622824,0.00015276672,0.00069628394,0.00003618792],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064455264,0.00013303866,0.00041470726,0.00043119627,0.00021985867,0.000012178019,0.00016869667,0.00015376859,0.000038186554],"category_scores_gemma":[0.00019380666,0.00009562579,0.00006480462,0.00020468226,0.00019151473,0.0003672561,0.00010520315,0.0003815203,8.238856e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030923933,0.00012719625,0.004904556,0.00011274731,0.00014054081,0.0000012272016,0.0025515303,0.000006597964,0.9818483,0.000053700813,0.00004340415,0.0071177874],"study_design_scores_gemma":[0.00287347,0.0013399672,0.26534188,0.0002163852,0.00001789319,0.000223168,0.0001350975,0.00027906138,0.7291798,0.000048330367,0.00025993993,0.00008502802],"about_ca_topic_score_codex":0.00002652817,"about_ca_topic_score_gemma":0.0000042474976,"teacher_disagreement_score":0.26043734,"about_ca_system_score_codex":0.000041556246,"about_ca_system_score_gemma":0.0001313638,"threshold_uncertainty_score":0.38995066},"labels":[],"label_agreement":null},{"id":"W2089580397","doi":"10.1089/154545703322460621","title":"Bovine and Ovine Blood Mononuclear Leukocytes Differ Markedly in Innate Immune Responses Induced by Class A and Class B CpG-Oligodeoxynucleotide","year":2003,"lang":"en","type":"article","venue":"Oligonucleotides","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Innate immune system; Immunology; Peripheral blood mononuclear cell; Immune system; CpG Oligodeoxynucleotide; Class (philosophy); Peripheral blood; CpG site; Genetics; Gene; Gene expression; In vitro; DNA methylation","score_opus":0.007961812312267476,"score_gpt":0.21360926746381784,"score_spread":0.20564745515155036,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089580397","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870735,0.008807935,0.00000643235,0.0008715065,0.0001885539,0.00045060623,0.00002755685,0.00013089733,0.0024430337],"genre_scores_gemma":[0.99432904,0.0018486244,0.00012292502,0.00030125634,0.00001860325,0.000053207536,0.00004764219,0.00007970976,0.0031989804],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965818,0.0010496107,0.00083382434,0.0006660692,0.00008675221,0.0007819525],"domain_scores_gemma":[0.9984806,0.00058494037,0.00026003568,0.0005130683,0.00008483445,0.00007650688],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010216997,0.00051380845,0.0007351065,0.00047425347,0.00032733855,0.000111713656,0.00024172576,0.0004634902,0.0003205471],"category_scores_gemma":[0.0008176172,0.0004836167,0.00009888533,0.00034491948,0.0004281106,0.0004545533,0.00020297123,0.0005657636,0.00012388373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019182825,0.00020305671,0.0059565376,0.00005751684,0.00021543968,0.000030088402,0.00051877997,0.0000010669896,0.9832561,0.0032071052,0.0014024634,0.003233538],"study_design_scores_gemma":[0.006683784,0.00095822144,0.16190007,0.000213666,0.00016057119,0.00036177327,0.0006848572,0.000050043174,0.7712528,0.00066623336,0.05614712,0.00092082494],"about_ca_topic_score_codex":0.00029209795,"about_ca_topic_score_gemma":0.00007085343,"teacher_disagreement_score":0.2120033,"about_ca_system_score_codex":0.00006364495,"about_ca_system_score_gemma":0.00008684439,"threshold_uncertainty_score":0.9997615},"labels":[],"label_agreement":null},{"id":"W2089646349","doi":"10.1074/jbc.275.10.6733","title":"T Cells Activated by Zwitterionic Molecules Prevent Abscesses Induced by Pathogenic Bacteria","year":2000,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":116,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Pathogenic bacteria; Bacteria; Chemistry; Microbiology; Cell biology; Biology; Genetics","score_opus":0.00917356239057326,"score_gpt":0.219682866612253,"score_spread":0.21050930422167974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089646349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99669695,0.0026242004,0.000011170719,0.00019535876,0.00010758549,0.0000582532,0.000023631897,0.000018510527,0.0002643432],"genre_scores_gemma":[0.99693936,0.0012322579,0.000021162768,0.00009867809,0.000042264448,0.0000036339247,0.0001256222,0.000008223678,0.0015287797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988628,0.00017370003,0.00051988184,0.00015554552,0.000041583266,0.00024646497],"domain_scores_gemma":[0.99934506,0.00008188185,0.00033703086,0.00013557333,0.00006534887,0.000035089728],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022275398,0.00017368591,0.0003078669,0.000017337115,0.00007733503,0.000020383037,0.00026522062,0.0004434175,0.0068087773],"category_scores_gemma":[0.000057415826,0.00011933936,0.000150845,0.00007475637,0.000086228065,0.00008621645,0.000028935294,0.00039317197,0.00012032869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005496074,0.00018523163,0.000015139629,0.000011206742,0.00010527095,0.000006531259,0.000026698533,6.761791e-7,0.9878904,2.1564223e-7,0.005279008,0.005930015],"study_design_scores_gemma":[0.00061391154,0.00028038846,0.0002943882,0.000037912007,0.000019417992,0.0001443855,0.000034330595,2.8419413e-7,0.95682967,0.000016206073,0.041586928,0.00014219913],"about_ca_topic_score_codex":0.0000031983418,"about_ca_topic_score_gemma":3.3528046e-8,"teacher_disagreement_score":0.036307923,"about_ca_system_score_codex":0.000047143745,"about_ca_system_score_gemma":0.000053817115,"threshold_uncertainty_score":0.99409914},"labels":[],"label_agreement":null},{"id":"W2089757602","doi":"10.1016/j.exphem.2007.06.008","title":"Discovery and characterization of a novel splice variant of the GM-CSF receptor α subunit","year":2007,"lang":"en","type":"article","venue":"Experimental Hematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Ectodomain; Exon; Molecular biology; Biology; Alternative splicing; Alu element; Protein subunit; Receptor; Gene; Biochemistry","score_opus":0.009642872857259649,"score_gpt":0.24397480161691928,"score_spread":0.23433192875965964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089757602","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996233,0.0017508658,0.0007367842,0.00009428022,0.0004285059,0.00018971234,0.000012159259,0.000009519748,0.00054520986],"genre_scores_gemma":[0.9993678,0.000030138885,0.000066656336,0.000048102225,0.000009102565,0.0000070532037,0.000052114297,0.000007747342,0.0004113292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992735,0.00008012998,0.00034768757,0.00012283848,0.00002591298,0.00014997766],"domain_scores_gemma":[0.9994681,0.00008571044,0.00023276318,0.0001814228,0.00002526689,0.000006766545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016472662,0.000093374765,0.00021986019,0.000064814514,0.000066821565,0.0000024468104,0.00010910285,0.00015119024,0.00010670389],"category_scores_gemma":[0.000025906882,0.00006963428,0.0000476996,0.00009419293,0.00025804024,0.00013660014,0.00009597535,0.00008274489,0.000010050581],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004175047,0.00018885755,0.0006372368,0.000019250116,0.000041064093,5.895134e-7,0.0011419042,4.597697e-8,0.96167856,0.035603013,0.000015866877,0.0002560807],"study_design_scores_gemma":[0.00082307204,0.000106451414,0.008786815,0.000035871475,0.000009181219,0.00020856687,0.0006598389,0.0000023775128,0.9883218,0.000006959239,0.0009730307,0.00006607762],"about_ca_topic_score_codex":0.000043241933,"about_ca_topic_score_gemma":0.000002667609,"teacher_disagreement_score":0.035596054,"about_ca_system_score_codex":0.000012268959,"about_ca_system_score_gemma":0.000024652747,"threshold_uncertainty_score":0.28396037},"labels":[],"label_agreement":null},{"id":"W2089757710","doi":"10.1097/ccm.0b013e318267633c","title":"Innate Immune Function and Mortality in Critically Ill Children With Influenza","year":2012,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"Office of Genomics and Precision Public Health; National Institute of Allergy and Infectious Diseases","keywords":"Medicine; Internal medicine; Immunology; Sepsis","score_opus":0.014065192946547712,"score_gpt":0.2889921243522503,"score_spread":0.27492693140570257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2089757710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9761314,0.020720022,0.00029961678,0.0010756018,0.00035126923,0.00018172085,0.000003852767,0.000044788416,0.0011917662],"genre_scores_gemma":[0.9982115,0.00003273015,0.000025675583,0.0014779017,0.00009643523,0.000021321883,0.000090436624,0.00001245498,0.00003152473],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99882007,0.00020684634,0.00032623843,0.00017990265,0.00006105698,0.00040589797],"domain_scores_gemma":[0.9991977,0.00019821078,0.00002516167,0.00020435732,0.00032470314,0.00004985862],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004113534,0.00015404861,0.00028582613,0.00012038802,0.00009705375,0.0000066009293,0.00006571613,0.00018419759,0.0003183813],"category_scores_gemma":[0.0012826533,0.00011042132,0.000021877331,0.0001364224,0.0007144975,0.00023652123,0.00004350256,0.0003322581,0.000063540654],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061177614,0.0000988565,0.8964419,0.000118828,0.0000818281,0.00000537249,0.0018987898,2.9782774e-7,0.07349234,0.018506845,0.00008717215,0.008655995],"study_design_scores_gemma":[0.0017998958,0.00052109617,0.98673236,0.000114588554,0.00012944086,0.000083573956,0.0019504701,7.4926754e-7,0.0063156034,0.0002378405,0.0019657381,0.00014861066],"about_ca_topic_score_codex":0.00016756244,"about_ca_topic_score_gemma":0.000015514726,"teacher_disagreement_score":0.090290494,"about_ca_system_score_codex":0.00003426216,"about_ca_system_score_gemma":0.000025777663,"threshold_uncertainty_score":0.4502851},"labels":[],"label_agreement":null},{"id":"W2090279487","doi":"10.1038/labinvest.3700716","title":"NOD2: a potential target for regulating liver injury","year":2008,"lang":"en","type":"article","venue":"Laboratory Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Université de Lyon; Institut Universitaire de France; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche","keywords":"Liver injury; NOD2; Muramyl dipeptide; Immune system; Concanavalin A; Biology; Immunology; Innate immune system; Pharmacology; Biochemistry","score_opus":0.01302418572410872,"score_gpt":0.21484310703950524,"score_spread":0.20181892131539653,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090279487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99636865,0.0006556041,0.0016415308,0.00024713748,0.00053473987,0.00030395717,0.00003488309,0.00011395679,0.000099548146],"genre_scores_gemma":[0.99591076,0.000025057856,0.0021329771,0.0003435295,0.000115080715,0.00006486033,0.0004057376,0.00001842256,0.0009835754],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913305,0.00018042384,0.00026823799,0.00018138338,0.000036005178,0.00020087857],"domain_scores_gemma":[0.99937636,0.000054519718,0.00015457372,0.00017378939,0.00022179174,0.000018940074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025194514,0.000117527736,0.0001368397,0.00009488602,0.00039707377,0.000010388278,0.00008520508,0.00020813399,0.00013201716],"category_scores_gemma":[0.0002108849,0.00011912477,0.000049026694,0.00017668457,0.00018932203,0.00031429273,0.000020202535,0.0001209753,0.00025087642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016247388,0.0000136797125,0.0007965276,0.000018712848,0.000032001008,0.0000017930362,0.00069394597,0.000033853896,0.9864755,0.0013133133,0.009792332,0.0006658304],"study_design_scores_gemma":[0.00070611737,0.00015607869,0.0075703356,0.000022135078,0.000018773571,0.000018681056,0.000064869855,0.00024741024,0.94936407,0.00056805473,0.041092876,0.00017062188],"about_ca_topic_score_codex":0.000012089521,"about_ca_topic_score_gemma":0.0000010779745,"teacher_disagreement_score":0.037111495,"about_ca_system_score_codex":0.00003845533,"about_ca_system_score_gemma":0.00017637297,"threshold_uncertainty_score":0.48577672},"labels":[],"label_agreement":null},{"id":"W2090461035","doi":"10.1016/j.coi.2006.11.005","title":"Innate recognition of intracellular bacteria","year":2006,"lang":"en","type":"review","venue":"Current Opinion in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":148,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Institute of General Medical Sciences; Ellison Medical Foundation; Foundation for the National Institutes of Health","keywords":"Innate immune system; Inflammasome; Biology; Cell biology; Intracellular; Receptor; Peptidoglycan; Pattern recognition receptor; Endosome; Transcription factor; Extracellular; Toll-like receptor; Cytosol; Flagellin; Signal transduction; TLR4; TLR7; Inflammation; Microbiology; Immunology; Bacteria; Gene; Biochemistry; Genetics","score_opus":0.06932131835286237,"score_gpt":0.33581233424558754,"score_spread":0.26649101589272517,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090461035","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00041729267,0.9825912,0.000040595885,0.000011190593,0.01591753,0.0007406133,0.00008752614,0.000050596846,0.00014345901],"genre_scores_gemma":[0.000039033133,0.98997927,0.000021798574,0.000001001197,0.00011932879,0.00018600903,0.009448743,0.00004396452,0.0001608458],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99590284,0.0013473564,0.0017769109,0.00045789295,0.000040598912,0.0004744092],"domain_scores_gemma":[0.99796605,0.00028671217,0.001111276,0.0005148037,0.00011206175,0.00000910793],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050708675,0.00048328357,0.0018424104,0.0010531325,0.00006222765,0.000011120334,0.00043330475,0.0011675553,0.0005261928],"category_scores_gemma":[0.00013833848,0.000448412,0.0004053042,0.0004796153,0.000305741,0.00013238653,0.00017430288,0.0010762594,0.0013362503],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008119613,0.00019738005,0.000003496938,0.006956159,0.00018208999,6.5257336e-7,0.000054489614,1.5963046e-7,0.0015860827,0.00030720493,0.001418778,0.98921233],"study_design_scores_gemma":[0.0007692958,0.00012847909,0.000054853805,0.012705697,0.0001142153,0.00008082621,0.000012248309,2.9143885e-7,0.0010044005,0.00014011626,0.9846057,0.000383845],"about_ca_topic_score_codex":0.000047595142,"about_ca_topic_score_gemma":0.0000016298677,"teacher_disagreement_score":0.9888285,"about_ca_system_score_codex":0.00014982896,"about_ca_system_score_gemma":0.00029607068,"threshold_uncertainty_score":0.99979675},"labels":[],"label_agreement":null},{"id":"W2090520729","doi":"10.1371/journal.pone.0036734","title":"Muramyl Dipeptide Induces NOD2-Dependent Ly6Chigh Monocyte Recruitment to the Lungs and Protects Against Influenza Virus Infection","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"Muramyl dipeptide; NOD2; Monocyte; CCR2; CCL2; Chemokine; Immunology; Inflammation; Influenza A virus; Biology; Innate immune system; Chemokine receptor; Immune system; Virus","score_opus":0.09145033438802588,"score_gpt":0.2725182493479745,"score_spread":0.1810679149599486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090520729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946043,0.0027293253,0.0000332486,0.0005637394,0.00020182245,0.0013363092,0.000005037875,0.000072870986,0.0004533404],"genre_scores_gemma":[0.9971922,0.0005049579,0.00006762135,0.0007655191,0.00009468089,0.0005317629,0.000029054028,0.000016952466,0.0007972348],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988065,0.00031674566,0.00026443438,0.00018999973,0.00007035819,0.00035195609],"domain_scores_gemma":[0.9993984,0.00008555465,0.00011767223,0.00029066348,0.000070563096,0.000037135884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046375324,0.00016604782,0.00020946721,0.00010034865,0.0002895188,0.00003842285,0.000098769866,0.00018492505,0.00007707078],"category_scores_gemma":[0.0001539506,0.00012278957,0.000038619593,0.00012082398,0.00005010796,0.0002703298,0.00013806546,0.00028794687,0.00058281474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023147126,0.00041703857,0.002639948,0.000029351588,0.00033432705,7.343128e-7,0.0016796681,0.0000056138806,0.9878158,0.000085085805,0.00011505796,0.0066459086],"study_design_scores_gemma":[0.00053942984,0.00014756838,0.052604668,0.000108107364,0.0000682298,0.000008948061,0.000115950985,0.0000026187654,0.9297045,0.000009800452,0.016527284,0.00016289383],"about_ca_topic_score_codex":0.0002543454,"about_ca_topic_score_gemma":0.00007416694,"teacher_disagreement_score":0.05811129,"about_ca_system_score_codex":0.00007908115,"about_ca_system_score_gemma":0.000031408093,"threshold_uncertainty_score":0.74910986},"labels":[],"label_agreement":null},{"id":"W2090537302","doi":"10.1111/j.1600-6143.2005.00829.x","title":"Innate Immunity and Organ Transplantation: The Potential Role of Toll-like Receptors","year":2005,"lang":"en","type":"review","venue":"American Journal of Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":117,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Canadian Institutes of Health Research; Government of Ontario","keywords":"Medicine; Innate immune system; Immunity; Transplantation; Immunology; Toll; Receptor; Organ transplantation; Immune system; Internal medicine","score_opus":0.007716769117064478,"score_gpt":0.2553226043243097,"score_spread":0.24760583520724522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090537302","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.017278077,0.98130643,0.00039024462,0.000081188475,0.0005784906,0.00024926578,0.00004276261,0.000009712994,0.000063809115],"genre_scores_gemma":[0.024172794,0.97526944,0.000109196095,0.000020687647,0.00006989632,0.000005558337,0.00026416822,0.000023903105,0.0000643314],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973766,0.0010772115,0.0011149728,0.00013098346,0.0000955389,0.00020469575],"domain_scores_gemma":[0.997741,0.0003198102,0.0016221208,0.0001658631,0.00012920813,0.000022020795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068610883,0.00026554932,0.0010210888,0.00031096523,0.00016668547,0.000017606442,0.00030570375,0.00018531701,0.00009692505],"category_scores_gemma":[0.000013569846,0.00017677977,0.00032392674,0.0002758625,0.00040234765,0.00021343694,0.000009368812,0.00061120605,0.000016411921],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060006336,0.000036698053,0.000006314101,0.00082141627,0.0005248565,0.000010540964,0.0021403295,0.000008278023,0.0025399132,0.00003624185,0.00003187932,0.99324346],"study_design_scores_gemma":[0.0020293684,0.001453797,0.00070684333,0.0064037223,0.0070950757,0.013004932,0.0024890243,0.0000021657656,0.0048534703,0.000045948582,0.9613412,0.00057446834],"about_ca_topic_score_codex":0.000065515735,"about_ca_topic_score_gemma":0.00001000749,"teacher_disagreement_score":0.992669,"about_ca_system_score_codex":0.0000359246,"about_ca_system_score_gemma":0.00022124272,"threshold_uncertainty_score":0.72088695},"labels":[],"label_agreement":null},{"id":"W2090540884","doi":"10.3389/fimmu.2013.00094","title":"The Regulation of Immune Responses by DC Derived Type I IFN","year":2013,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Lymphotoxin; Immune system; Biology; Immunology; Cell biology; Receptor; Pattern recognition receptor; Tumor necrosis factor alpha; Cytokine; Autoimmunity; Cell type; Interferon; Innate immune system; Cell; Genetics","score_opus":0.005407072893891454,"score_gpt":0.2060055252611414,"score_spread":0.20059845236724996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090540884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9513268,0.04351837,0.00049427775,0.0009822954,0.002655016,0.00040934654,0.0000034573352,0.00004010532,0.00057036674],"genre_scores_gemma":[0.98861444,0.0017420142,0.00031083424,0.00003562155,0.000009893235,0.00006272912,0.00010206003,0.000018141454,0.00910426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979703,0.0007615627,0.0006412742,0.0001966841,0.000036240934,0.0003939437],"domain_scores_gemma":[0.9987503,0.00031643076,0.00028731517,0.00048447822,0.00015405385,0.000007407299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048625155,0.00016284082,0.0003336159,0.000205605,0.0002128464,0.000015210123,0.00037807654,0.00036252086,0.00030073329],"category_scores_gemma":[0.00046847886,0.00012648717,0.00007818331,0.00027542017,0.0006229593,0.0001875533,0.00009059299,0.0003025944,0.0003192648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012707695,0.000039057093,0.0013846412,0.0000045412244,0.00016756373,3.015559e-7,0.0003253279,0.000002519701,0.944311,0.0003752896,0.030039636,0.022079334],"study_design_scores_gemma":[0.0012361391,0.0002766452,0.1508237,0.000025751466,0.000016527818,0.000018544035,0.0010399197,0.000021096666,0.7620991,0.0014169988,0.08286011,0.00016546533],"about_ca_topic_score_codex":0.00030038867,"about_ca_topic_score_gemma":0.0000074517166,"teacher_disagreement_score":0.18221192,"about_ca_system_score_codex":0.000071790724,"about_ca_system_score_gemma":0.0000848854,"threshold_uncertainty_score":0.5157997},"labels":[],"label_agreement":null},{"id":"W2090739012","doi":"10.1016/j.vetimm.2005.06.015","title":"Age-related alterations to immune parameters in Labrador retriever dogs","year":2005,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Waltham Centre for Pet Nutrition; University of Nottingham","keywords":"CD8; Immune system; Biology; Concanavalin A; Lymphocyte; CD3; Antibody; Immunology; Internal medicine; Endocrinology; Medicine; In vitro","score_opus":0.013408401733398103,"score_gpt":0.24804031200413051,"score_spread":0.2346319102707324,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2090739012","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98284626,0.011255918,0.00008365102,0.0030119792,0.0012081381,0.000600366,0.000012405482,0.00015560567,0.00082568557],"genre_scores_gemma":[0.9939768,0.0008359118,0.00078604365,0.0006227798,0.000020118481,0.00016212082,0.00019600397,0.000042506257,0.0033577317],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963126,0.0010570795,0.0010737159,0.0006519142,0.00004349583,0.00086120085],"domain_scores_gemma":[0.99870086,0.00027899147,0.00020458378,0.0007105878,0.000068909074,0.000036072648],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00078226137,0.00043427086,0.00071431656,0.00081115926,0.0003706457,0.000036819907,0.00042723754,0.0007766854,0.00048046105],"category_scores_gemma":[0.00024901654,0.0004412895,0.00012500273,0.00051653397,0.0006917614,0.00046078602,0.00037824706,0.0008717805,0.0018178574],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016868934,0.00019770296,0.0004388034,0.000009942667,0.00015761025,0.00021602363,0.003211808,0.000045536464,0.9632267,0.0012266041,0.0001593165,0.029423065],"study_design_scores_gemma":[0.012598684,0.009246785,0.4919304,0.00024421496,0.00014575332,0.015328591,0.0014424392,0.00004988103,0.2665818,0.0010005584,0.19936371,0.0020671883],"about_ca_topic_score_codex":0.00019366648,"about_ca_topic_score_gemma":0.00003689686,"teacher_disagreement_score":0.6966449,"about_ca_system_score_codex":0.00012388443,"about_ca_system_score_gemma":0.00006788743,"threshold_uncertainty_score":0.9998039},"labels":[],"label_agreement":null},{"id":"W2091209445","doi":"10.4161/gmic.29100","title":"Polarizing the T helper 17 response in<i>Citrobacter rodentium</i>infection via expression of resistin-like molecule α","year":2014,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Aplastic Anemia and Myelodysplasia Association of Canada","keywords":"Citrobacter rodentium; Biology; Citrobacter; Effector; Microbiology; Immunology; Cytokine; Inflammation; Macrophage; Intestinal mucosa; Pathogen; Immunity; Immune system; Escherichia coli; Enterobacteriaceae; Medicine; Gene; In vitro","score_opus":0.005737929186980082,"score_gpt":0.21192660248971834,"score_spread":0.20618867330273827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091209445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951352,0.0010181989,0.0023724593,0.00030296366,0.0004376923,0.00020197162,0.0000030912925,0.000039322782,0.0004891097],"genre_scores_gemma":[0.99645865,0.000046256693,0.000099238045,0.00018472534,0.00002429617,0.000016626795,0.0000436443,0.00001815301,0.0031083927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978493,0.001158444,0.00042001158,0.00023620224,0.000041343574,0.00029474185],"domain_scores_gemma":[0.9989957,0.00029585118,0.00019323867,0.00042628692,0.00007840288,0.000010481424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011098195,0.00016674891,0.00023110086,0.00020409307,0.00020286297,0.000019898043,0.00019838613,0.00023434713,0.00018122292],"category_scores_gemma":[0.00021808487,0.00012418658,0.000112122725,0.00016470184,0.0001712894,0.00015629189,0.000114911876,0.0002779145,0.00018620124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015992236,0.00005889315,0.001518119,0.000017772043,0.00002188134,9.162689e-7,0.00071462727,0.00002063043,0.99360025,0.000043386495,0.0018007722,0.0006035018],"study_design_scores_gemma":[0.000743885,0.00011726597,0.066203296,0.0001298575,0.000020554236,0.000025309557,0.0000659133,0.000010011248,0.8934929,0.000050764633,0.039006103,0.0001341476],"about_ca_topic_score_codex":0.0002701647,"about_ca_topic_score_gemma":0.000046229245,"teacher_disagreement_score":0.10010739,"about_ca_system_score_codex":0.00004042686,"about_ca_system_score_gemma":0.000034816985,"threshold_uncertainty_score":0.50641817},"labels":[],"label_agreement":null},{"id":"W2091774812","doi":"10.1159/000316574","title":"TLR9 Signaling Failure Renders Peyer’s Patch Regulatory B Cells Unresponsive to Stimulation with CpG Oligodeoxynucleotides","year":2010,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institutes of Health","keywords":"TLR9; CpG Oligodeoxynucleotide; Toll-Like Receptor 9; Stimulation; Cell biology; Signal transduction; Phosphorylation; Biology; Receptor; Agonist; Molecular biology; Immunology; Endocrinology; Gene; Gene expression; Biochemistry","score_opus":0.007611336120836658,"score_gpt":0.2288264114344485,"score_spread":0.22121507531361184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091774812","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971989,0.00017586967,0.00064340065,0.00081670407,0.0007760155,0.00019955428,0.0000051353363,0.000030260162,0.00015419026],"genre_scores_gemma":[0.99814695,0.000019795085,0.0011347226,0.00019714642,0.00006993146,0.0000042088586,0.00001483151,0.000028384738,0.00038403735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980581,0.0006266485,0.00071678427,0.00014826939,0.00011758932,0.00033263076],"domain_scores_gemma":[0.9976915,0.00039066572,0.00069909764,0.00041381182,0.00074681314,0.00005811018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015862057,0.00023685527,0.0003968827,0.0004681793,0.0003516819,0.000051512507,0.00038560634,0.00029841132,0.00042763678],"category_scores_gemma":[0.00037524063,0.00018566962,0.00014411393,0.0003042084,0.00016502918,0.0004716909,0.00007802994,0.0013912459,0.00012285876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026894708,0.00008439247,0.0007353974,0.00001394565,0.00022416745,0.000015985963,0.0021542558,0.0012415772,0.9888345,0.00015742709,0.0016016415,0.0022472432],"study_design_scores_gemma":[0.0015515197,0.00079083984,0.026538514,0.00014773487,0.000087611064,0.00030148026,0.001848846,0.00001602435,0.95523787,0.0001506212,0.0130709605,0.00025799594],"about_ca_topic_score_codex":0.00010275121,"about_ca_topic_score_gemma":0.00007962666,"teacher_disagreement_score":0.033596642,"about_ca_system_score_codex":0.00007899435,"about_ca_system_score_gemma":0.00026283768,"threshold_uncertainty_score":0.7571387},"labels":[],"label_agreement":null},{"id":"W2091829446","doi":"10.3899/jrheum.090775","title":"Multiplex Screening of 22 Single-Nucleotide Polymorphisms in 7 Toll-like Receptors: An Association Study in Rheumatoid Arthritis","year":2010,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"H. Lundbeck A/S; Lundbeckfonden; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Medicine; Rheumatoid arthritis; Single-nucleotide polymorphism; SNP; Immunology; Internal medicine; Cohort; Disease; Pathogenesis; Rheumatology; Genotype; Oncology; Genetics; Gene; Biology","score_opus":0.011902416209993856,"score_gpt":0.23673394889806215,"score_spread":0.2248315326880683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091829446","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99654144,0.0009795838,0.000048478414,0.0003438593,0.0017929596,0.00023771312,0.0000014119588,0.000011695387,0.00004286602],"genre_scores_gemma":[0.9990373,0.00071252545,0.00012757961,0.000023088178,0.0000070089054,0.000003843456,0.0000070425504,0.0000166931,0.00006488432],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99646544,0.0016400657,0.0013370655,0.00012475249,0.000095380514,0.00033732087],"domain_scores_gemma":[0.99740374,0.0008625862,0.0012857135,0.00026417166,0.00016312754,0.000020655583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034111757,0.00016219424,0.0006556377,0.00050949305,0.000091786416,0.000010919296,0.000395966,0.00031080766,0.00024346169],"category_scores_gemma":[0.0007769857,0.00012871981,0.00008685833,0.00024510332,0.00013438931,0.0003416359,0.000066065186,0.00093331997,0.000027066242],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011680326,0.0005188892,0.6626798,0.000003816994,0.00011248832,0.0000067418937,0.0050664456,0.00003793541,0.32080084,0.000051318275,0.00023660267,0.009317113],"study_design_scores_gemma":[0.02000194,0.0036421276,0.85995984,0.0007429676,0.00006120621,0.0047239815,0.016465908,0.00011865808,0.088270664,0.0003846055,0.005021732,0.0006063732],"about_ca_topic_score_codex":0.001576973,"about_ca_topic_score_gemma":0.005046071,"teacher_disagreement_score":0.23253019,"about_ca_system_score_codex":0.00006689161,"about_ca_system_score_gemma":0.000093566516,"threshold_uncertainty_score":0.52490413},"labels":[],"label_agreement":null},{"id":"W2091949830","doi":"10.1016/s0091-3057(02)01024-9","title":"Sex differences in the effects of muramyl dipeptide and lipopolysaccharide on locomotor activity and the development of behavioral tolerance in rats","year":2002,"lang":"en","type":"article","venue":"Pharmacology Biochemistry and Behavior","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Muramyl dipeptide; Lipopolysaccharide; Open field; Locomotor activity; Intraperitoneal injection; Pharmacology; Medicine; Endocrinology; Internal medicine; Immunology","score_opus":0.015585486041197787,"score_gpt":0.270189662207591,"score_spread":0.2546041761663932,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2091949830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977746,0.0015668571,7.9212333e-7,0.00016301771,0.000083817205,0.00038890683,0.0000032809587,0.0000041338817,0.000014566608],"genre_scores_gemma":[0.99943197,0.00024420873,0.000007818991,0.000034828823,0.0000075361936,0.0001619278,0.0000029994935,0.0000031801367,0.00010554239],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999155,0.00025303935,0.00024343545,0.0001675941,0.000030729803,0.00015021121],"domain_scores_gemma":[0.99936116,0.00041009515,0.00011782,0.00008838973,0.000012730097,0.000009798633],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002770954,0.00012766532,0.0002616359,0.000044253673,0.00008213199,0.0000051584016,0.00011054129,0.00013720199,0.000033263026],"category_scores_gemma":[0.00001734146,0.00007943137,0.000021794825,0.000052377753,0.00052361324,0.00003971478,0.000052001935,0.0002502827,7.3496403e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045109456,0.0004267526,0.018701322,0.00008585751,0.000016020216,0.0000051464567,0.0029215289,5.1779583e-8,0.96370023,0.0000051160373,0.0000151667455,0.013671719],"study_design_scores_gemma":[0.0022619439,0.000099186596,0.11222518,0.0000408715,0.000065975764,0.00001699076,0.00024210133,0.000007103728,0.88494956,0.0000026589935,0.0000146146995,0.00007379253],"about_ca_topic_score_codex":0.000046004803,"about_ca_topic_score_gemma":0.000013367528,"teacher_disagreement_score":0.09352386,"about_ca_system_score_codex":0.000010872847,"about_ca_system_score_gemma":0.000015284779,"threshold_uncertainty_score":0.3239117},"labels":[],"label_agreement":null},{"id":"W2092069761","doi":"10.1046/j.1365-3083.2000.00684.x","title":"Protective DNA Immunization against <i>Chlamydia pneumoniae</i>","year":2000,"lang":"en","type":"article","venue":"Scandinavian Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Karolinska Institutet; Universität Zürich; University of Toronto","keywords":"DNA vaccination; CD8; Chlamydophila pneumoniae; Biology; Spleen; Antibody; Immunization; Vaccination; Immunology; Immune system; Virology; Chlamydiaceae; Microbiology","score_opus":0.004751553528394886,"score_gpt":0.20396653368088424,"score_spread":0.19921498015248937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092069761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871773,0.007082087,0.0002627041,0.0004906375,0.001017627,0.00026787867,0.0000055478413,0.000042306638,0.0036538967],"genre_scores_gemma":[0.9959988,0.0013093186,0.000049995168,0.00013084014,0.00008166806,0.000011790947,0.000039498846,0.00003014735,0.0023479627],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977048,0.0007027756,0.0008751582,0.00018941329,0.000069031914,0.00045878935],"domain_scores_gemma":[0.9986163,0.000112396076,0.0005863798,0.000340025,0.0003166005,0.000028339762],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005827276,0.00025133794,0.0005088925,0.00036413808,0.00030178498,0.00002955763,0.00047510222,0.00039900985,0.0019395129],"category_scores_gemma":[0.0001415957,0.00021817724,0.00022482118,0.00034797975,0.00033472566,0.00043773156,0.000042178974,0.0007773751,0.00097610353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015544152,0.00012860319,0.0010152109,0.00000879538,0.0004977778,0.000042297284,0.0011217509,0.00004185119,0.8648317,0.00026236623,0.00063140295,0.12986383],"study_design_scores_gemma":[0.008198061,0.0025189794,0.08328942,0.0005419935,0.00019934392,0.0054372377,0.0013167581,0.000008711426,0.80946493,0.0018897207,0.0863463,0.0007885513],"about_ca_topic_score_codex":0.000019771658,"about_ca_topic_score_gemma":0.0000027568947,"teacher_disagreement_score":0.12907527,"about_ca_system_score_codex":0.00014598132,"about_ca_system_score_gemma":0.00016088701,"threshold_uncertainty_score":0.99980175},"labels":[],"label_agreement":null},{"id":"W2092401848","doi":"10.1016/j.cellimm.2007.02.010","title":"Penta-acylated lipopolisaccharide binds to murine MD-2 but does not induce the oligomerization of TLR4 required for signal transduction","year":2006,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Ministry of Education, Culture, Sports, Science and Technology","keywords":"Mutant; Biology; Signal transduction; Transfection; TLR4; Lipopolysaccharide; Cell biology; Recombinant DNA; Lipid A; Escherichia coli; Molecular biology; Transduction (biophysics); Biochemistry; Gene; Immunology","score_opus":0.012009155736999602,"score_gpt":0.22301331409863476,"score_spread":0.21100415836163516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092401848","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98646593,0.0017091676,0.007960045,0.0014342053,0.0013483204,0.00084104587,0.000053179578,0.000078157595,0.000109948494],"genre_scores_gemma":[0.9953187,0.00012336312,0.00009284247,0.00009289278,0.00011638461,0.00013319361,0.0007778195,0.00003267768,0.003312123],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980981,0.00034774837,0.0007262597,0.00033198754,0.00005362947,0.00044231003],"domain_scores_gemma":[0.99888116,0.00017992443,0.00031411418,0.00044171087,0.00017070069,0.0000124077715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004290073,0.00024405505,0.0003970622,0.00028922746,0.00031234242,0.00001687329,0.0003547692,0.00040870026,0.00050884427],"category_scores_gemma":[0.00007871458,0.00017641866,0.00017529902,0.00028881757,0.00030793357,0.00016710036,0.00006383769,0.00023087148,0.00014548984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013016118,0.000108674765,0.000041924373,0.00002286143,0.00020118592,0.0000012817021,0.0005050804,0.0000656639,0.99200165,0.0025351546,0.00020535501,0.003009524],"study_design_scores_gemma":[0.0014345102,0.00035844848,0.0010823602,0.000019926227,0.00009836557,0.000031002408,0.00031363143,0.000021461332,0.9795015,0.00036454012,0.016566882,0.00020741178],"about_ca_topic_score_codex":0.00068152393,"about_ca_topic_score_gemma":0.000027675764,"teacher_disagreement_score":0.016361527,"about_ca_system_score_codex":0.00006100451,"about_ca_system_score_gemma":0.00008125963,"threshold_uncertainty_score":0.7194144},"labels":[],"label_agreement":null},{"id":"W2092786350","doi":"10.1159/000323880","title":"A Nonsynonymous Polymorphism of IRAK4 Associated with Increased Prevalence of Gram-Positive Infection and Decreased Response to Toll-Like Receptor Ligands","year":2011,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"National Institutes of Health; Amgen","keywords":"Biology; Single-nucleotide polymorphism; Haplotype; Immunology; Allele; Systemic inflammatory response syndrome; Sepsis; Genetics; Gene; Genotype","score_opus":0.011832233312374455,"score_gpt":0.2202942616806106,"score_spread":0.20846202836823613,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092786350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986666,0.0006112667,0.00010703287,0.00006803531,0.00017159422,0.00022784813,0.000033072192,0.000012509019,0.00010205484],"genre_scores_gemma":[0.99939454,0.00020413302,0.0001317819,0.000045622113,0.000006835973,0.0000047034064,0.0000126095265,0.0000145644935,0.00018521801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975606,0.0012612172,0.0007640282,0.00010970855,0.00009647694,0.00020795428],"domain_scores_gemma":[0.99726987,0.00054827286,0.0011528983,0.00023917755,0.00073876994,0.000051000385],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022314736,0.00018163523,0.00048235452,0.0005020241,0.00013223063,0.0000075561034,0.00019573141,0.0002288231,0.00011962342],"category_scores_gemma":[0.0014200717,0.00014514639,0.00011038376,0.00035543847,0.0002613881,0.00027170315,0.00007066977,0.0004265752,0.000006048855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.030219605,0.00045991148,0.017718362,0.000041647058,0.00048853806,0.0000080976115,0.0035452854,0.0000014964471,0.9465524,0.000016344513,0.00008849258,0.00085984776],"study_design_scores_gemma":[0.0017872002,0.0028439169,0.45535022,0.00046696252,0.00012485478,0.00013574815,0.00014615954,0.0000010294915,0.53898513,0.000013507941,0.0000506007,0.00009463262],"about_ca_topic_score_codex":0.00088994193,"about_ca_topic_score_gemma":0.000025862244,"teacher_disagreement_score":0.43763188,"about_ca_system_score_codex":0.00008371507,"about_ca_system_score_gemma":0.00027641284,"threshold_uncertainty_score":0.5918898},"labels":[],"label_agreement":null},{"id":"W2092854606","doi":"10.1111/j.1439-0531.2008.01318.x","title":"Post-natal Changes in Testicular Concentrations of Interleukin-1 Alpha and Beta and Interleukin-6 during Sexual Maturation in Bulls","year":2009,"lang":"en","type":"article","venue":"Reproduction in Domestic Animals","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Sexual maturity; Internal medicine; Endocrinology; Interleukin 1β; Interleukin; Alpha (finance); Age groups; Testicle; BETA (programming language); Medicine; Biology; Andrology; Cytokine; Surgery","score_opus":0.007558741555225445,"score_gpt":0.2459559466191749,"score_spread":0.23839720506394943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092854606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939424,0.0038801695,0.000019045365,0.0016124176,0.00013202312,0.00035776905,0.000005099289,0.000019231487,0.000031869877],"genre_scores_gemma":[0.99941826,0.00026371414,0.00007673684,0.000018863066,0.000028581379,0.000016499478,0.000034590754,0.000006332931,0.00013643352],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99877566,0.00017191113,0.00046026695,0.00036496762,0.000035488818,0.00019169862],"domain_scores_gemma":[0.99949,0.0001038124,0.00014722363,0.00018342432,0.000064006825,0.000011488087],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044946538,0.00013092307,0.0002631627,0.00038874536,0.00004096074,0.00001657955,0.000055360666,0.00013401789,0.000031885098],"category_scores_gemma":[0.0005667417,0.00013120128,0.000013165838,0.00022555845,0.0001302277,0.0002094932,0.000033019238,0.0001982912,0.000006056106],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007235222,0.00007646987,0.00736048,0.00005243885,0.000012353751,0.000019385512,0.0019984075,0.000028769684,0.98356503,0.00039303082,0.000007058099,0.0057630735],"study_design_scores_gemma":[0.0012848318,0.00045025058,0.75179523,0.0001789076,0.000013174904,0.0005465348,0.0012041028,0.00003421351,0.24406037,0.00020624553,0.0000901971,0.00013593415],"about_ca_topic_score_codex":0.00013067808,"about_ca_topic_score_gemma":0.000108752436,"teacher_disagreement_score":0.7444348,"about_ca_system_score_codex":0.00006687617,"about_ca_system_score_gemma":0.000033361877,"threshold_uncertainty_score":0.5350233},"labels":[],"label_agreement":null},{"id":"W2092861122","doi":"10.1006/clim.2001.5131","title":"Recovery from Mouse Hepatitis Virus Infection Depends on Recruitment of CD8+ Cells Rather Than Activation of Intrahepatic CD4+αβ−TCRinter or NK-T Cells","year":2001,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Mouse hepatitis virus; CD8; Immunology; Chemistry; Virology; Immune system; Biology; Medicine; Pathology; Disease; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","score_opus":0.05982355052287723,"score_gpt":0.3231139639359794,"score_spread":0.26329041341310216,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092861122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951852,0.00027316544,0.0009268029,0.0001340616,0.0023425317,0.0006031612,0.000038964416,0.00005858205,0.000437524],"genre_scores_gemma":[0.9829199,0.012975597,0.000116657015,0.00018782058,0.00007204329,0.000071880095,0.00022180355,0.00003552838,0.0033988033],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962689,0.0013456099,0.0015350728,0.00043179825,0.00006540999,0.00035319963],"domain_scores_gemma":[0.9964493,0.0017995823,0.0008848427,0.00067098835,0.00017271767,0.000022593013],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006226286,0.0002822907,0.0007851825,0.00025148402,0.0000856604,0.000009566778,0.00026449116,0.0008471936,0.0021780867],"category_scores_gemma":[0.0005094569,0.00023289914,0.000315822,0.0001988813,0.0003909482,0.00020221672,0.00012324481,0.00060032663,0.0007778681],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008317031,0.0009230399,0.00717911,0.000016560833,0.00086027785,0.00000566386,0.00024779138,0.00002496599,0.9387718,0.000078758145,0.00058482133,0.042990178],"study_design_scores_gemma":[0.0022550903,0.0033795116,0.037149526,0.0001401161,0.00011164172,0.000008976491,0.00005362082,0.00001525979,0.9459558,0.000208667,0.010504959,0.0002168428],"about_ca_topic_score_codex":0.0035416062,"about_ca_topic_score_gemma":0.0005570837,"teacher_disagreement_score":0.042773336,"about_ca_system_score_codex":0.00010249692,"about_ca_system_score_gemma":0.00011087433,"threshold_uncertainty_score":0.999818},"labels":[],"label_agreement":null},{"id":"W2092972513","doi":"10.1111/j.1600-065x.2009.00765.x","title":"Immune regulation by 4‐1BB and 4‐1BBL: complexities and challenges","year":2009,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":301,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Immune system; Biology; Immune receptor; Immunology; CD8; Receptor; T cell; Immunotherapy; Genetics","score_opus":0.1267117739713093,"score_gpt":0.32451600313484363,"score_spread":0.19780422916353432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2092972513","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020508502,0.9966295,0.000011945752,0.00034853068,0.00023062965,0.0014606217,0.000020356862,0.00011871746,0.0011591834],"genre_scores_gemma":[0.000012165705,0.996719,0.00006890466,0.000054044816,0.0000377645,0.00019473389,0.00070913846,0.000033897948,0.0021703315],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9952147,0.0019751315,0.0015526643,0.00069350086,0.000054092296,0.00050992775],"domain_scores_gemma":[0.9978756,0.00053866685,0.00087953516,0.0006264985,0.000049028717,0.000030678344],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001159286,0.0007683161,0.0034209783,0.00019233329,0.00030279145,0.00006519935,0.00035644387,0.0012308995,0.00033645498],"category_scores_gemma":[0.00045306468,0.00051692774,0.0004291801,0.00015318254,0.0005771643,0.00018918615,0.0002450499,0.00083283655,0.00069460535],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003373292,0.000045865574,4.7784123e-8,0.0033136383,0.00015022306,0.0000017489775,0.00008227272,3.2663092e-9,0.0007496663,0.003087861,0.00065626286,0.9918787],"study_design_scores_gemma":[0.00036000635,0.00035199025,0.000050012157,0.007115541,0.0003885058,0.00032475236,0.000036724286,1.6323149e-7,0.00006451384,0.0005264907,0.9902423,0.0005389892],"about_ca_topic_score_codex":0.000008688015,"about_ca_topic_score_gemma":8.80157e-7,"teacher_disagreement_score":0.9913397,"about_ca_system_score_codex":0.000068569134,"about_ca_system_score_gemma":0.000043205553,"threshold_uncertainty_score":0.9997282},"labels":[],"label_agreement":null},{"id":"W2093883160","doi":"10.1177/1753425910392934","title":"Expression of integrins and Toll-like receptors in cervical cancer: Effect of infectious agents","year":2011,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Thunder Bay Regional Research Institute; NOSM University; Thunder Bay Regional Health Sciences Centre; Lakehead University","funders":"","keywords":"Integrin; Biology; TLR2; HeLa; Carcinogenesis; Cervical cancer; Innate immune system; Immune system; Immunology; HPV infection; Receptor; Cancer research; Microbiology; Cancer; Cell","score_opus":0.01493005321460483,"score_gpt":0.2576588847360078,"score_spread":0.24272883152140295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2093883160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970388,0.0011726845,0.000006215102,0.000009074616,0.00056452845,0.00018628397,0.0000039436686,0.000018242004,0.001000241],"genre_scores_gemma":[0.99929214,0.00051889545,0.000007698162,0.000009609241,0.0000031504746,0.000021229589,0.000017635382,0.000007958758,0.00012166054],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859995,0.0007548888,0.0003568768,0.00010681276,0.000026712305,0.00015476014],"domain_scores_gemma":[0.99939513,0.00015367808,0.00017467537,0.0002193693,0.000047123627,0.000010012054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048789647,0.00012171059,0.00031141037,0.00018997249,0.00005213688,0.0000019816523,0.00014218838,0.00022487233,0.000402353],"category_scores_gemma":[0.00011119992,0.000097376025,0.000050584393,0.0001505374,0.00017584284,0.00011156175,0.00013580539,0.00033320487,0.000013552718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015741622,0.00014207474,0.15062058,0.000118187774,0.00005915881,0.0000014965599,0.004113995,0.000001590176,0.82604927,0.000038920374,0.00011769642,0.017162865],"study_design_scores_gemma":[0.0012161029,0.00042264603,0.17626415,0.00016919662,0.000015592552,0.0000073333913,0.0001239885,0.000002127455,0.8208244,0.00003366535,0.00084531156,0.00007551666],"about_ca_topic_score_codex":0.0045388164,"about_ca_topic_score_gemma":0.00014674109,"teacher_disagreement_score":0.02564358,"about_ca_system_score_codex":0.00003265755,"about_ca_system_score_gemma":0.000028493032,"threshold_uncertainty_score":0.68613625},"labels":[],"label_agreement":null},{"id":"W2094043027","doi":"10.1002/1097-0185(20010201)262:2<186::aid-ar1024>3.0.co;2-b","title":"Effects of intradermally administered plasmid deoxyribonucleic acid on ovine popliteal lymph node morphology","year":2001,"lang":"en","type":"article","venue":"The Anatomical Record","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Lymph; Lymph node; Medullary cavity; Plasmid; Medulla; Anatomy; Cortex (anatomy); Pathology; Germinal center; Biology; Molecular biology; Medicine; Chemistry; DNA; Immunology; Antibody","score_opus":0.008674121227968817,"score_gpt":0.23233109601648191,"score_spread":0.2236569747885131,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094043027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99556994,0.00063373934,0.0001033983,0.0018082391,0.00054544356,0.00024815998,0.0000053226413,0.000059562808,0.0010261969],"genre_scores_gemma":[0.9978406,0.00028298813,0.00004652516,0.0009563263,0.000048248607,0.00002268137,0.000045055112,0.000021644797,0.00073592365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984124,0.00045313456,0.000437598,0.00024794615,0.000050280792,0.00039865053],"domain_scores_gemma":[0.99862754,0.0007204839,0.00018747471,0.0003933356,0.000042412685,0.0000287285],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025150657,0.00020350792,0.00037521514,0.00012706002,0.00012427587,0.000009366379,0.00039661722,0.0003117166,0.00043760642],"category_scores_gemma":[0.0002996965,0.00014364292,0.0001426467,0.0001583293,0.00028095717,0.0000638748,0.000097718745,0.00032425698,0.0009702273],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048191906,0.00019422972,0.0011589334,0.00002986048,0.00015560306,0.000039608873,0.00016270833,0.0000017482109,0.9491092,0.0018408158,0.0015167751,0.04097134],"study_design_scores_gemma":[0.0029316908,0.00059968146,0.057998255,0.000077410565,0.00008210426,0.00028964606,0.000049996772,0.000056227247,0.9117495,0.0005595006,0.025371416,0.00023457069],"about_ca_topic_score_codex":0.00006522446,"about_ca_topic_score_gemma":0.000005645378,"teacher_disagreement_score":0.05683932,"about_ca_system_score_codex":0.000055316264,"about_ca_system_score_gemma":0.000066780194,"threshold_uncertainty_score":0.99980766},"labels":[],"label_agreement":null},{"id":"W2094785827","doi":"10.1016/j.jim.2012.05.008","title":"Optimization and application of a flow cytometric PU.1 assay for murine immune cells","year":2012,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Molecular biology; Flow cytometry; Paraformaldehyde; Antibody; Haematopoiesis; Biology; Immune system; Bone marrow; Myeloid; Antigen; Chemistry; Spleen; Immunology; Cell biology; Stem cell","score_opus":0.02040784501404489,"score_gpt":0.3303461088522085,"score_spread":0.3099382638381636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094785827","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.13150422,0.02815123,0.83919346,0.00013162885,0.000627891,0.00029024424,0.0000041856447,0.000013694372,0.00008346272],"genre_scores_gemma":[0.53353864,0.0013799416,0.46482185,0.00002259299,0.000064180356,0.000021417143,0.000016928094,0.000012933579,0.00012150511],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976421,0.0010442567,0.0008899414,0.000105860636,0.00004921569,0.0002686344],"domain_scores_gemma":[0.99696696,0.001545334,0.0009441433,0.0001809753,0.00033876902,0.000023794446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0047728554,0.0001478363,0.0005245702,0.0004160406,0.000098957535,0.000010125966,0.0001933208,0.0003287537,0.00010058593],"category_scores_gemma":[0.0016197735,0.00010646354,0.00018829353,0.00036917801,0.00015234355,0.000284757,0.00007072497,0.000288971,0.0000069751763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065036287,0.0001724542,0.00013779658,0.000025451882,0.00017209965,1.8289894e-7,0.00011677147,0.00047519538,0.8026148,0.00029124937,0.000026412312,0.1953172],"study_design_scores_gemma":[0.0017195718,0.00093053305,0.008115481,0.000031701456,0.0001399352,0.00014401932,0.00015464665,0.0010624299,0.97584134,0.00019904033,0.0115193585,0.00014191892],"about_ca_topic_score_codex":0.0000034975353,"about_ca_topic_score_gemma":2.437042e-8,"teacher_disagreement_score":0.40203443,"about_ca_system_score_codex":0.00004337069,"about_ca_system_score_gemma":0.000029195991,"threshold_uncertainty_score":0.43414572},"labels":[],"label_agreement":null},{"id":"W2094891970","doi":"10.1099/vir.0.052811-0","title":"Polymorphism in the promoter region of the Toll-like receptor 9 gene and cervical human papillomavirus infection","year":2013,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McGill University","funders":"National Cancer Institute; Canadian Institutes of Health Research; McGill University; Fundação de Amparo à Pesquisa do Estado de São Paulo; Universidade do Minho; Ludwig Institute for Cancer Research","keywords":"Biology; Genotype; Genotyping; HPV infection; TLR9; Single-nucleotide polymorphism; Allele; Virology; Cohort; Gene; SNP; Cervical cancer; Immunology; Genetics; Internal medicine; Medicine; Gene expression; Cancer","score_opus":0.011256381782768585,"score_gpt":0.22517767657166463,"score_spread":0.21392129478889604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094891970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99449533,0.0010283717,0.000021054308,0.003674137,0.0005226417,0.00017209495,4.6062925e-7,0.0000027375204,0.00008314544],"genre_scores_gemma":[0.9985281,0.00022882447,0.00002339166,0.0005985109,0.00010251484,0.000007350216,0.0000028522272,0.000006027416,0.0005023939],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99841815,0.0008334299,0.0004650922,0.000083580126,0.00004085466,0.0001589174],"domain_scores_gemma":[0.9993328,0.000057061,0.00037223817,0.00016245838,0.00006595604,0.000009474863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042428522,0.00009434582,0.00022136889,0.00011645077,0.00010911616,0.000008869727,0.0001753003,0.0002272672,0.00016659475],"category_scores_gemma":[0.000034300494,0.000049876973,0.00009273532,0.00008552962,0.00019187815,0.00012502921,0.000051716717,0.00035872712,0.000017813143],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017065149,0.00006151578,0.008921911,0.0000047272156,0.00004606359,0.0000036936358,0.00049168686,0.0000041737485,0.98502517,0.0002448308,0.002275696,0.0027498773],"study_design_scores_gemma":[0.0015611153,0.00089819083,0.77702695,0.000020845311,0.00004324383,0.002043798,0.000044050536,0.000006851585,0.20342146,0.000882112,0.013960092,0.00009126424],"about_ca_topic_score_codex":0.00027431382,"about_ca_topic_score_gemma":0.000029924915,"teacher_disagreement_score":0.7816037,"about_ca_system_score_codex":0.000022147278,"about_ca_system_score_gemma":0.000027868678,"threshold_uncertainty_score":0.20339239},"labels":[],"label_agreement":null},{"id":"W2094908344","doi":"10.1038/sj.cdd.4400671","title":"Increased expression of the potential proapoptotic molecule DD2 and increased synthesis of leukotriene B4 during allograft rejection in a marine sponge","year":2000,"lang":"en","type":"article","venue":"Cell Death and Differentiation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Deutsche Forschungsgemeinschaft; McGill University","keywords":"Death domain; Apoptosis; Sponge; Transplantation; Necroptosis; Biology; Programmed cell death; Tumor necrosis factor alpha; Complementary DNA; Molecular biology; Necrosis; Receptor; Cell biology; Gene; Immunology; Biochemistry; Medicine; Genetics; Internal medicine","score_opus":0.0035137119875428445,"score_gpt":0.17457992102211678,"score_spread":0.17106620903457392,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094908344","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99914324,0.0002816305,0.000023133216,0.000013536779,0.00004173699,0.0002578833,0.000004351922,0.000011160583,0.00022333364],"genre_scores_gemma":[0.999421,0.00026721854,0.000025699053,0.000004236882,0.0000066604575,0.000019274472,0.000052796087,0.0000072025755,0.00019592291],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99908614,0.00028673344,0.00029563563,0.00015852235,0.00004264821,0.00013033338],"domain_scores_gemma":[0.9995977,0.00006189994,0.00015031545,0.00014689009,0.000029776127,0.000013370326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014023764,0.00010927045,0.00019046305,0.00013127358,0.00009199717,0.0000076595825,0.000057459023,0.00014047725,0.0001662798],"category_scores_gemma":[0.00005930751,0.000082857,0.000046357636,0.00010048349,0.000056894,0.00009167112,0.000048331927,0.00009215277,0.0000019879633],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010039002,0.000114383525,0.027174136,0.000099869714,0.000013954544,6.332516e-7,0.00016372821,0.000008120092,0.96855253,0.000011812289,0.0000018028194,0.0028551072],"study_design_scores_gemma":[0.00083171,0.000032911026,0.45544344,0.000050700342,0.000033799344,0.0000059103127,0.000028006898,0.00006258446,0.5434338,0.000028606166,0.0000042039073,0.000044366046],"about_ca_topic_score_codex":0.00041145206,"about_ca_topic_score_gemma":0.000014441157,"teacher_disagreement_score":0.4282693,"about_ca_system_score_codex":0.00001688303,"about_ca_system_score_gemma":0.000020487905,"threshold_uncertainty_score":0.33788103},"labels":[],"label_agreement":null},{"id":"W2094918348","doi":"10.1073/pnas.2230460100","title":"Critical roles for IFN-β in lymphoid development, myelopoiesis, and tumor development: Links to tumor necrosis factor α","year":2003,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; U.S. Department of Veterans Affairs","keywords":"Myelopoiesis; Biology; Spleen; CD8; Tumor necrosis factor alpha; Lewis lung carcinoma; Immunology; Haematopoiesis; Bone marrow; Immune system; Stem cell; Cancer; Cell biology","score_opus":0.02940428361803975,"score_gpt":0.29382655665838936,"score_spread":0.2644222730403496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2094918348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977288,0.00032723206,0.000006937259,0.0011107513,0.0000285032,0.00024332885,0.000005700534,0.000007537435,0.0005411764],"genre_scores_gemma":[0.9951246,0.000008312564,0.00428027,0.00034155004,0.000006699096,0.0000485651,3.840631e-7,0.0000037778939,0.00018588563],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989978,0.000014805106,0.00041442414,0.00021132306,0.00014606059,0.00021558927],"domain_scores_gemma":[0.9993332,0.00028364724,0.00016289117,0.0000063619823,0.0001973884,0.000016516326],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011295555,0.00010186862,0.00017100584,0.00024138755,0.00029018824,0.000021016693,0.00030920838,0.00011333096,0.000019942472],"category_scores_gemma":[0.002257142,0.000074451076,0.000030113615,0.00034496703,0.00040278607,0.0002934337,0.00007616622,0.00012498921,0.0000046436276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090544345,0.000046033536,0.009573654,0.00007770628,0.000018193045,5.2097135e-9,0.0013363764,0.0000021828405,0.9634963,0.02355268,0.00023321528,0.001573073],"study_design_scores_gemma":[0.00031010926,0.00002999861,0.09081217,0.000100993275,0.0000035363719,0.000014625525,0.00028849175,0.000005234217,0.89849615,0.0025036633,0.0073417635,0.00009327383],"about_ca_topic_score_codex":0.0000018491189,"about_ca_topic_score_gemma":3.5470148e-7,"teacher_disagreement_score":0.081238516,"about_ca_system_score_codex":0.000049725368,"about_ca_system_score_gemma":0.00016013133,"threshold_uncertainty_score":0.30360267},"labels":[],"label_agreement":null},{"id":"W2095072263","doi":"10.1097/01.ccm.0000256723.37586.a2","title":"Toll-like receptor 2 activation by bacterial peptidoglycan–associated lipoprotein activates cardiomyocyte inflammation and contractile dysfunction","year":2007,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Jubilee Hospital","funders":"National Heart, Lung, and Blood Institute; U.S. Public Health Service; Amgen","keywords":"Peptidoglycan; Medicine; Inflammation; Toll-like receptor; Receptor; Cell biology; Immunology; Internal medicine; Innate immune system; Biochemistry; Gene; Biology","score_opus":0.007636607219905471,"score_gpt":0.24900562957097352,"score_spread":0.24136902235106805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095072263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99130577,0.0011991042,0.0016208428,0.0022431118,0.0017577783,0.00043877377,0.000019149653,0.00013731296,0.0012781617],"genre_scores_gemma":[0.9970969,0.00005276341,0.000024447918,0.00011305544,0.00043457237,0.00003331513,0.0016646552,0.000022671657,0.000557618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984327,0.00026946835,0.00047596978,0.00030542817,0.00011786469,0.0003985692],"domain_scores_gemma":[0.9985002,0.0007529503,0.00013296798,0.00018371876,0.0003722764,0.000057861416],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070265547,0.00022477098,0.0003698708,0.00015945687,0.0002891604,0.000025741749,0.00007640174,0.00044274182,0.00073762046],"category_scores_gemma":[0.0024136687,0.00019607911,0.000051203962,0.00015848855,0.000359952,0.0003849015,0.000033469576,0.00036123226,0.00007127186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001446199,0.000022714275,0.00013282416,0.000053432617,0.00006522067,0.0000020798132,0.00092026556,1.7404673e-7,0.94889635,0.00025729134,0.0048501515,0.04335329],"study_design_scores_gemma":[0.002686551,0.0005963876,0.0048278174,0.00017155289,0.00009335035,0.000018450155,0.0034448367,0.000002496591,0.87724,0.000050394956,0.11064801,0.00022016015],"about_ca_topic_score_codex":0.0002532506,"about_ca_topic_score_gemma":0.000024772857,"teacher_disagreement_score":0.105797864,"about_ca_system_score_codex":0.0002156632,"about_ca_system_score_gemma":0.000048535974,"threshold_uncertainty_score":0.8076427},"labels":[],"label_agreement":null},{"id":"W2095222532","doi":"10.1097/ccm.0b013e3181659333","title":"Differential gene profiling in acute lung injury identifies injury-specific gene expression*","year":2008,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; St. Michael's Hospital","funders":"","keywords":"Medicine; Gene expression profiling; Gene; Gene expression; Lung; Pathology; Internal medicine; Genetics; Biology","score_opus":0.016487713502171035,"score_gpt":0.29413475074344947,"score_spread":0.2776470372412784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095222532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9837868,0.011733628,0.0012191508,0.00064326497,0.001963264,0.00026433193,0.000025477782,0.000081258055,0.0002827775],"genre_scores_gemma":[0.99778754,0.00070595247,0.0001341478,0.0001215603,0.000263999,0.00005439095,0.0004419323,0.000023027054,0.000467427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821436,0.00028189775,0.0005663362,0.00036787748,0.00011261879,0.000456934],"domain_scores_gemma":[0.9991448,0.00020253785,0.000052268802,0.00035514773,0.0002001783,0.000045056975],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015508993,0.00022942257,0.00043990847,0.00027229064,0.00028375915,0.000009977374,0.00021614158,0.00030248932,0.0012762754],"category_scores_gemma":[0.0003457068,0.00018225035,0.00007796361,0.0001841805,0.0006875513,0.00016077528,0.000121164936,0.0004757059,0.00016123995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006688515,0.000043970424,0.0013545607,0.000056022243,0.000027163362,0.00010411694,0.001899889,2.0424996e-7,0.9911836,0.00038487255,0.0031530578,0.0011237194],"study_design_scores_gemma":[0.0011843062,0.00025538707,0.005273979,0.00015936793,0.000052931755,0.00012693033,0.0010211654,0.000003690399,0.9897344,0.00008891876,0.0018976497,0.00020124206],"about_ca_topic_score_codex":0.000020521298,"about_ca_topic_score_gemma":0.0000013610346,"teacher_disagreement_score":0.014000717,"about_ca_system_score_codex":0.000094087154,"about_ca_system_score_gemma":0.00005957493,"threshold_uncertainty_score":0.9996367},"labels":[],"label_agreement":null},{"id":"W2095274041","doi":"10.1002/eji.200939929","title":"Divergent roles of Toll‐like receptor 2 in response to lipoteichoic acid and <i>Staphylococcus aureus in vivo</i>","year":2010,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"Lipoteichoic acid; TLR2; Biology; Proinflammatory cytokine; Staphylococcus aureus; Immunology; Immune system; Microbiology; Neutrophilia; Innate immune system; Inflammation; Bacteria","score_opus":0.005260969175494623,"score_gpt":0.20903868954784294,"score_spread":0.20377772037234831,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095274041","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99251544,0.004793585,0.000027958922,0.00093863276,0.0012668896,0.00014517114,0.0000065750232,0.0000083596515,0.00029737107],"genre_scores_gemma":[0.99877053,0.00046578405,0.00022796186,0.00013258676,0.00003510421,0.0000020090552,0.0000025502814,0.000020869058,0.00034261835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964351,0.0020527947,0.00096526445,0.00017777926,0.000048955364,0.00032008553],"domain_scores_gemma":[0.998887,0.00023372717,0.0004369055,0.00028117935,0.00013061707,0.00003055293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025340323,0.00017965659,0.00044861206,0.000809469,0.000053097832,0.000009946628,0.0003998348,0.00014591431,0.00032849092],"category_scores_gemma":[0.0006989536,0.00015879521,0.00008847961,0.00023879898,0.00021516118,0.00014495784,0.00018931137,0.00080611266,0.00012268947],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008824059,0.00011450035,0.0020605347,0.000006288722,0.000082693856,0.00008877919,0.0022584216,0.000010044112,0.9760931,0.00004574866,0.0008670651,0.009548757],"study_design_scores_gemma":[0.0032587857,0.0014442946,0.10583503,0.00011202647,0.000014433408,0.00022490081,0.0005719941,4.6728152e-7,0.73657274,0.000015376481,0.15177871,0.00017125515],"about_ca_topic_score_codex":0.000015955178,"about_ca_topic_score_gemma":0.00006902046,"teacher_disagreement_score":0.23952039,"about_ca_system_score_codex":0.000036140773,"about_ca_system_score_gemma":0.000095673524,"threshold_uncertainty_score":0.6475481},"labels":[],"label_agreement":null},{"id":"W2095279860","doi":"10.1159/000083406","title":"Does Rigid Bronchoscopy Induce Bacterial Translocation?","year":2005,"lang":"en","type":"article","venue":"Respiration","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Medicine; Bronchoscopy; Chromosomal translocation; Rigid bronchoscopy; Bacterial translocation; Surgery; Genetics","score_opus":0.009880301794434696,"score_gpt":0.2477375974642356,"score_spread":0.2378572956698009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095279860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929524,0.00040684157,0.00211376,0.0020411815,0.00085800566,0.00023706749,0.0000041632256,0.00009636425,0.0012902258],"genre_scores_gemma":[0.9963716,0.00006146921,0.00017163264,0.00020685019,0.00032659143,0.000030434801,0.0003247223,0.0000107393935,0.002495937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991495,0.00018284553,0.0002938036,0.00016894513,0.000033923578,0.00017101054],"domain_scores_gemma":[0.99959695,0.000042607957,0.00009161497,0.0001990988,0.000059267324,0.000010462278],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025490278,0.000103777274,0.00011681654,0.0000928765,0.00016037117,0.000029687111,0.00009613877,0.00019337347,0.0013527046],"category_scores_gemma":[0.00005368202,0.00007135123,0.00004555308,0.00008768033,0.000044041466,0.00040469875,0.000009809721,0.00012273429,0.0017954435],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022779826,0.00003454552,0.00007978764,0.0000036263182,0.00001999101,1.5758434e-7,0.00038701808,0.000016068809,0.92129296,0.00076153426,0.00080040144,0.076376095],"study_design_scores_gemma":[0.0005884262,0.0000594641,0.0022976708,0.000010672831,0.0000074261925,0.00000262164,0.000018377563,0.0000119189235,0.6040654,0.00004372187,0.39281622,0.00007807287],"about_ca_topic_score_codex":0.000032072585,"about_ca_topic_score_gemma":0.000058069458,"teacher_disagreement_score":0.3920158,"about_ca_system_score_codex":0.00005417098,"about_ca_system_score_gemma":0.000068471185,"threshold_uncertainty_score":0.9995602},"labels":[],"label_agreement":null},{"id":"W2095369514","doi":"10.1016/j.molimm.2014.09.004","title":"Evidence for a common mucosal immune system in the pig","year":2014,"lang":"en","type":"review","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"High Energy Physics Group, University of Mississippi; Alberta Livestock and Meat Agency; Ministry of Agriculture - Saskatchewan; University of Saskatchewan","keywords":"Immune system; Mucosal immunity; Immunology; Mucous membrane; Immunity; Antigen; Mucosal immunology; Immunization; Biology; Medicine","score_opus":0.04762642949775957,"score_gpt":0.3311773704111829,"score_spread":0.2835509409134233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095369514","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00026886677,0.99410367,0.0012367686,0.00015115418,0.0012678769,0.002583813,0.000014607406,0.000094580304,0.00027866923],"genre_scores_gemma":[0.006280998,0.99066406,0.000034343364,0.000083740924,0.000048099468,0.0018436667,0.00070361566,0.00008336815,0.00025807784],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926226,0.004461445,0.0014800802,0.000594183,0.00006578139,0.00077589357],"domain_scores_gemma":[0.99546325,0.0021735409,0.0007804111,0.0014862415,0.00008648044,0.000010099098],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022902582,0.00063672324,0.0024185032,0.000477553,0.00024873394,0.000047577083,0.0015996449,0.001421039,0.000035862737],"category_scores_gemma":[0.00056868215,0.0004470214,0.0009535001,0.00038797472,0.00030264177,0.000088043715,0.00023185155,0.0011227264,0.0010155494],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035470608,0.00009632172,0.0000011498818,0.0068980735,0.0009524104,0.00007083739,0.00026127166,0.0000010985239,0.010317451,0.013586292,0.00039070772,0.9670697],"study_design_scores_gemma":[0.00086884026,0.00038250932,0.000017315002,0.010126795,0.0005623215,0.001040759,0.000118172524,0.0000034187665,0.0018760212,0.00004447365,0.9845031,0.00045630673],"about_ca_topic_score_codex":0.00012297745,"about_ca_topic_score_gemma":0.000012747328,"teacher_disagreement_score":0.9841124,"about_ca_system_score_codex":0.00024011586,"about_ca_system_score_gemma":0.00028406447,"threshold_uncertainty_score":0.9998753},"labels":[],"label_agreement":null},{"id":"W2095853585","doi":"10.1210/en.2012-1534","title":"Toll-Like Receptor 4 Activation Reduces Adrenal Chromaffin Cell Excitability Through a Nuclear Factor-κB-Dependent Pathway","year":2012,"lang":"en","type":"article","venue":"Endocrinology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Endocrinology; Internal medicine; Adrenal medulla; Rheobase; Receptor; Biology; Chromaffin cell; Chemistry; Catecholamine; Cell biology; Depolarization; Medicine","score_opus":0.01780931028683896,"score_gpt":0.2377441109315841,"score_spread":0.21993480064474513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095853585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898569,0.0015358407,0.000096781514,0.0005591404,0.0023447715,0.0003574597,0.00002374818,0.00022519543,0.005000178],"genre_scores_gemma":[0.9963406,0.00017372906,0.0001743845,0.00019038361,0.00019058527,0.00004832526,0.00016788897,0.000034892422,0.0026792118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99740213,0.000696571,0.0004874062,0.0003997934,0.000070084905,0.0009440351],"domain_scores_gemma":[0.9989484,0.00023438128,0.00024465442,0.00046190163,0.00007416099,0.000036499754],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019212272,0.00029949128,0.0003828183,0.00012761162,0.0003132376,0.000019260766,0.00030048576,0.00038280294,0.0056031886],"category_scores_gemma":[0.00013514968,0.00027485052,0.00014246967,0.00012182015,0.00023539162,0.0006457143,0.00017182743,0.00052867585,0.0041616475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049462233,0.00031245625,0.0005820568,0.000018639876,0.00009664477,0.0000018966283,0.002838446,0.0000014099769,0.98400885,0.0014499507,0.0029432504,0.007251775],"study_design_scores_gemma":[0.001004654,0.00021356757,0.009845965,0.000010800111,0.000014740941,0.00007531892,0.00074761856,4.708115e-7,0.7711381,0.000058446956,0.2166459,0.00024447555],"about_ca_topic_score_codex":0.0001349392,"about_ca_topic_score_gemma":0.0000049037453,"teacher_disagreement_score":0.21370265,"about_ca_system_score_codex":0.0001675374,"about_ca_system_score_gemma":0.00008251115,"threshold_uncertainty_score":0.9999704},"labels":[],"label_agreement":null},{"id":"W2095869307","doi":"10.4049/jimmunol.1400895","title":"Single-Cell Analysis of Innate Cytokine Responses to Pattern Recognition Receptor Stimulation in Children across Four Continents","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Innate immune system; Immunology; Biology; Acquired immune system; Immunity; Cytokine; Stimulation; Cohort; Receptor; Pattern recognition receptor; Immune system; Medicine; Neuroscience; Internal medicine; Genetics","score_opus":0.01675353734497367,"score_gpt":0.2507384266025388,"score_spread":0.23398488925756514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095869307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967459,0.0005165299,0.0016897912,0.0005255305,0.00029092553,0.00017112639,0.00002365282,0.0000081752105,0.000028377286],"genre_scores_gemma":[0.9994178,0.00014627149,0.000057986603,0.000113059374,0.000026379483,0.0000026804976,0.00007493222,0.000011538367,0.00014936869],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9969559,0.0016885761,0.00092113105,0.00010908387,0.000060229675,0.0002650871],"domain_scores_gemma":[0.99786776,0.0006476299,0.0008923952,0.0002565235,0.0003239709,0.000011738386],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002172062,0.0001422515,0.00051429245,0.00072180544,0.00008513048,0.0000089274745,0.0003179343,0.00020150194,0.00015967069],"category_scores_gemma":[0.0006540516,0.00010483126,0.00014883447,0.0005897619,0.000120118835,0.00014022677,0.00008170084,0.00033537642,0.0000964403],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043712053,0.0001405987,0.03318451,0.0000034097377,0.0008999521,6.0449116e-7,0.0014780273,0.00028313967,0.9131485,0.0000016212149,0.00006900948,0.04641941],"study_design_scores_gemma":[0.002380546,0.0010510366,0.5868721,0.000053141168,0.00033612456,0.00007056294,0.00022161077,0.000035547528,0.40816793,0.000027416347,0.00067318423,0.000110823225],"about_ca_topic_score_codex":0.00015364992,"about_ca_topic_score_gemma":0.000036217494,"teacher_disagreement_score":0.5536876,"about_ca_system_score_codex":0.00005923695,"about_ca_system_score_gemma":0.000029251203,"threshold_uncertainty_score":0.4274895},"labels":[],"label_agreement":null},{"id":"W2095995140","doi":"10.1007/s00296-007-0490-7","title":"Analysis of single nucleotide polymorphisms in Toll-like receptor 4 shows no association with ankylosing spondylitis in a Korean population","year":2007,"lang":"en","type":"article","venue":"Rheumatology International","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto Western Hospital; University of Toronto; Memorial University of Newfoundland","funders":"","keywords":"Single-nucleotide polymorphism; Ankylosing spondylitis; Medicine; Immunology; Genotyping; Allele; Pathogenesis; Population; TLR4; Allele frequency; Genetics; Internal medicine; Genotype; Biology; Immune system; Gene","score_opus":0.006433206092364446,"score_gpt":0.2273951183967775,"score_spread":0.22096191230441306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2095995140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973187,0.00013374565,0.00024857328,0.00025318557,0.00081040215,0.0001365607,0.00006289378,0.000026286434,0.0010096917],"genre_scores_gemma":[0.9971249,0.000027344051,0.00018787997,0.000047528847,0.000009459208,0.000007865549,0.0019635432,0.0000114880795,0.000619975],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99835765,0.00021739787,0.0007766857,0.00024567984,0.000103602186,0.0002990053],"domain_scores_gemma":[0.9988039,0.00040094837,0.00048017345,0.00014689888,0.00015542461,0.000012658937],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00091705285,0.00014092741,0.00043049638,0.0014452625,0.000040224935,0.000010865094,0.0001633001,0.00029820393,0.0012957464],"category_scores_gemma":[0.00028152755,0.00014185658,0.00009377289,0.0005774759,0.00005757275,0.0002403419,0.000033883152,0.00020295176,0.000066521214],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012989425,0.0001729087,0.8811117,0.000005148563,0.0005937672,0.00000825221,0.00063621043,0.00008907614,0.11379164,0.0009532186,0.000110127265,0.001229006],"study_design_scores_gemma":[0.0020233586,0.00014113568,0.9579717,0.00013528421,0.00009728375,0.000052403186,0.000248353,0.00033796654,0.036478974,0.00006349394,0.0022327362,0.0002172907],"about_ca_topic_score_codex":0.001793033,"about_ca_topic_score_gemma":0.004359225,"teacher_disagreement_score":0.07731266,"about_ca_system_score_codex":0.00048565288,"about_ca_system_score_gemma":0.000037205875,"threshold_uncertainty_score":0.9996172},"labels":[],"label_agreement":null},{"id":"W2096134520","doi":"10.1189/jlb.0111051","title":"In vivo-transmigrated human neutrophils are resistant to antiapoptotic stimulation","year":2011,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institute for Military and Veteran Health Research; Stiftelsen Jubileumsklinikens Forskningsfond mot Cancer; Göteborgs Läkaresällskap; Göteborgs Tandläkare-Sällskap; Kungl. Skogs- och Lantbruksakademien; Vetenskapsrådet; Canadian Institutes of Health Research; IngaBritt och Arne Lundbergs Forskningsstiftelse; Svenska Forskningsrådet Formas","keywords":"Biology; In vivo; Stimulation; Cell biology; Immunology; Microbiology; Neuroscience; Genetics","score_opus":0.02999973778651953,"score_gpt":0.27422818125146164,"score_spread":0.2442284434649421,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096134520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755377,0.000854232,0.0002441887,0.00030663935,0.00056996336,0.00013779978,0.0000031697105,0.000011802594,0.00031844908],"genre_scores_gemma":[0.9992459,0.00007281927,0.00014303211,0.00017508265,0.00005584368,0.0000025259028,0.0000065899344,0.000010952728,0.00028730038],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983625,0.00042652342,0.00076149864,0.00014275704,0.000027489998,0.00027926214],"domain_scores_gemma":[0.99911165,0.000068628324,0.00045689655,0.00015757588,0.00017705742,0.000028177825],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005146045,0.00014435795,0.0003973152,0.00053340767,0.00008000323,0.000006057798,0.00021775259,0.0002687995,0.0004964009],"category_scores_gemma":[0.00008426615,0.00011652175,0.00010546326,0.00021592357,0.000082381484,0.00016791034,0.000024573703,0.00029737913,0.000100977464],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023294217,0.000091560214,0.004834066,0.000008130522,0.000073085605,0.000044642147,0.00069981744,0.00002833835,0.9902787,0.00065408176,0.00070575293,0.00025235966],"study_design_scores_gemma":[0.002125838,0.0017035594,0.18159951,0.00009372642,0.00004049088,0.00015560102,0.00017064782,0.0000028071308,0.7970996,0.0005631769,0.016267044,0.00017799658],"about_ca_topic_score_codex":0.00011875944,"about_ca_topic_score_gemma":0.00006661747,"teacher_disagreement_score":0.19317915,"about_ca_system_score_codex":0.00008936146,"about_ca_system_score_gemma":0.00007210565,"threshold_uncertainty_score":0.5435242},"labels":[],"label_agreement":null},{"id":"W2096162040","doi":"10.1039/c2ra01149b","title":"Synthesis and immunostimulatory activity of diethanolamine-containing lipid A mimics","year":2012,"lang":"en","type":"article","venue":"RSC Advances","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; Lakehead University","funders":"University of Alberta","keywords":"Lipid A; Chemistry; Diethanolamine; TLR4; Immune system; Receptor; Toll-like receptor; Biochemistry; Innate immune system; Biology; Lipopolysaccharide; Immunology","score_opus":0.011913467787847007,"score_gpt":0.2502717901611561,"score_spread":0.23835832237330906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096162040","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9606262,0.038155355,0.00014889745,0.000038598428,0.00034297036,0.0000826278,0.0000042418446,0.00002697475,0.00057416287],"genre_scores_gemma":[0.99802893,0.0016065671,0.00012380352,0.0000137467905,0.00003360366,0.000013010353,0.000004733912,0.000008575501,0.00016704957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993567,0.0001298808,0.00016528093,0.00010079476,0.000022090955,0.0002252456],"domain_scores_gemma":[0.99916273,0.0005111781,0.00013856041,0.00014653792,0.000029549998,0.000011439002],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026320454,0.00010598598,0.0002169134,0.00006763245,0.00009257608,0.000003462332,0.00006905093,0.000110892026,0.00005886301],"category_scores_gemma":[0.00025812307,0.000093471725,0.00004393667,0.000055680423,0.0001335777,0.00046876367,0.00004899127,0.00010836321,0.000031828113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047927414,0.000053246054,0.009237553,0.000041686017,0.00006917014,2.0711607e-7,0.0006307525,0.000004238671,0.8977747,0.00034247118,0.000014426427,0.0913523],"study_design_scores_gemma":[0.00030449728,0.00009407473,0.039132543,0.00005530355,0.000033900604,0.000015512831,0.00028767364,0.000007438725,0.9416481,0.000026682206,0.018275563,0.00011868418],"about_ca_topic_score_codex":0.000019366573,"about_ca_topic_score_gemma":0.0000020872853,"teacher_disagreement_score":0.09123362,"about_ca_system_score_codex":0.000015561944,"about_ca_system_score_gemma":0.000017062031,"threshold_uncertainty_score":0.3811666},"labels":[],"label_agreement":null},{"id":"W2096584779","doi":"10.4049/jimmunol.181.9.6481","title":"Signaling through MyD88 Regulates Leukocyte Recruitment after Brain Injury","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Neurological Institute and Hospital","funders":"Universitätsspital Basel","keywords":"Infiltration (HVAC); Hippocampal formation; TLR2; Microglia; Receptor; Biology; Hippocampus; TLR4; Inflammation; Knockout mouse; Cell biology; Immunology; Endocrinology; Internal medicine; Medicine","score_opus":0.03373268247313254,"score_gpt":0.26972488161160585,"score_spread":0.2359921991384733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096584779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96536535,0.028835468,0.00027007033,0.004127964,0.0009973887,0.00019947687,0.000001550663,0.00002175925,0.00018100096],"genre_scores_gemma":[0.99386215,0.0031509206,0.00013314647,0.00091455365,0.000091013884,0.000011598407,0.0000059937893,0.000019309302,0.0018113186],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976173,0.0010975583,0.000757094,0.00010589826,0.000060474176,0.00036168826],"domain_scores_gemma":[0.998359,0.00051110564,0.00058367715,0.0003470083,0.00018861047,0.000010550395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010189846,0.00019161552,0.00039634109,0.00014881436,0.00032184573,0.0000073570113,0.00042744318,0.00026319321,0.00053284544],"category_scores_gemma":[0.00018274838,0.00012197195,0.00018209906,0.00014764167,0.0005269196,0.00027869438,0.00010626454,0.00063907076,0.00031828872],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005131039,0.00006209952,0.000093754184,0.0000042297534,0.0005713562,0.00003932876,0.004254091,0.000023220528,0.9793017,0.00013902746,0.0065004923,0.0038796489],"study_design_scores_gemma":[0.0012217114,0.0009336562,0.0047597326,0.000063945714,0.00007629931,0.0045735594,0.0005550811,8.1540844e-7,0.8591945,0.00060047634,0.1278751,0.00014513181],"about_ca_topic_score_codex":0.000027995111,"about_ca_topic_score_gemma":0.0000014785855,"teacher_disagreement_score":0.12137461,"about_ca_system_score_codex":0.00009040343,"about_ca_system_score_gemma":0.00012459459,"threshold_uncertainty_score":0.5834284},"labels":[],"label_agreement":null},{"id":"W2096585076","doi":"10.4049/jimmunol.0904207","title":"Ischemia Reperfusion Induces IFN Regulatory Factor 4 in Renal Dendritic Cells, which Suppresses Postischemic Inflammation and Prevents Acute Renal Failure","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"","keywords":"Inflammation; Medicine; Ischemia; Renal ischemia; Reperfusion injury; Immunology; Cardiology; Pharmacology; Internal medicine","score_opus":0.005064089351872513,"score_gpt":0.21804515014045375,"score_spread":0.21298106078858123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096585076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99508053,0.0029673958,0.000018843692,0.001011747,0.0006699663,0.0001785956,0.0000057770567,0.000015305848,0.000051857158],"genre_scores_gemma":[0.9985761,0.0008071033,0.00012958451,0.000020469548,0.00008450643,0.0000044402473,0.000023451803,0.000017462236,0.00033689043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99805814,0.00056919974,0.00079771853,0.00015949039,0.00008331291,0.00033213932],"domain_scores_gemma":[0.99838156,0.00035458436,0.0006604965,0.00034565225,0.000235955,0.000021745513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087493233,0.00021758013,0.00037759877,0.0002996645,0.00018844623,0.00002313393,0.00043131717,0.0005656024,0.0002617834],"category_scores_gemma":[0.00032561447,0.00015414601,0.000069309994,0.00018027099,0.00027684734,0.0004621781,0.00016693013,0.0015415382,0.000034956247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011299611,0.000038642098,0.00024608395,0.000012026142,0.0002744489,0.000011309501,0.0012738918,0.00000459386,0.99333835,0.00004594541,0.00054446666,0.0030802593],"study_design_scores_gemma":[0.0016019305,0.00029104375,0.013838201,0.00012594665,0.000116891286,0.00221913,0.00024116707,0.0000030873491,0.9781255,0.00012405672,0.0031593794,0.0001536809],"about_ca_topic_score_codex":0.000038325208,"about_ca_topic_score_gemma":0.00009157867,"teacher_disagreement_score":0.015212886,"about_ca_system_score_codex":0.000043759657,"about_ca_system_score_gemma":0.00020138656,"threshold_uncertainty_score":0.6697302},"labels":[],"label_agreement":null},{"id":"W2096729904","doi":"10.4049/jimmunol.0901474","title":"AS04, an Aluminum Salt- and TLR4 Agonist-Based Adjuvant System, Induces a Transient Localized Innate Immune Response Leading to Enhanced Adaptive Immunity","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":742,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"GlaxoSmithKline (Canada)","funders":"","keywords":"Adjuvant; Innate immune system; Cytokine; Immune system; TLR4; Agonist; Immunity; Immunology; Acquired immune system; Biology; Cell biology; Receptor; Biochemistry","score_opus":0.01415199173789151,"score_gpt":0.25433354480714176,"score_spread":0.24018155306925026,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096729904","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9818511,0.010194676,0.0045578433,0.002069038,0.0007098451,0.00044315518,0.0000074881646,0.000056861994,0.00011000864],"genre_scores_gemma":[0.9989213,0.00025365627,0.00020447279,0.00035130366,0.000034584926,0.000009419376,0.000013242274,0.000025595285,0.00018642988],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9929362,0.0048838514,0.0012436431,0.00022697076,0.000115224895,0.00059409323],"domain_scores_gemma":[0.99725723,0.0007745884,0.0008573579,0.0006201955,0.0004332521,0.000057348],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0044669895,0.00036799643,0.0009195807,0.0005704284,0.00058609707,0.000038238304,0.00074112474,0.0003996847,0.000052740757],"category_scores_gemma":[0.00042095268,0.00026121727,0.00017887712,0.00036281015,0.00045307016,0.00033742771,0.000060459184,0.0010629564,0.000092119735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.052131183,0.00016201961,0.0000019458553,0.000010603419,0.00032494962,0.00002488756,0.0060133603,0.0001356799,0.92660624,0.0002540938,0.000051932257,0.014283126],"study_design_scores_gemma":[0.004634661,0.0087769525,0.011466755,0.00036463942,0.00021054088,0.0012593891,0.006506754,0.00003094014,0.9643828,0.00008077429,0.001953561,0.00033218338],"about_ca_topic_score_codex":0.000115967814,"about_ca_topic_score_gemma":0.000010763133,"teacher_disagreement_score":0.04749652,"about_ca_system_score_codex":0.00022806905,"about_ca_system_score_gemma":0.00036469699,"threshold_uncertainty_score":0.999984},"labels":[],"label_agreement":null},{"id":"W2096977835","doi":"10.1016/s1074-7613(03)00148-1","title":"The MAGUK Family Protein CARD11 Is Essential for Lymphocyte Activation","year":2003,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":329,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Biology; Cell biology; Guanylate kinase; Acquired immune system; Immunological synapse; Innate immune system; Signal transduction; Receptor; Immune system; Co-stimulation; T cell; T-cell receptor; Immunology; Genetics; CD28","score_opus":0.012443096850246683,"score_gpt":0.2437585279488091,"score_spread":0.2313154310985624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2096977835","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99209905,0.0017301869,0.0016477515,0.0002625654,0.0005077176,0.00072754046,0.000007956635,0.00004993801,0.0029673094],"genre_scores_gemma":[0.9929747,0.000061841216,0.000066501314,0.00016124202,0.000020912004,0.00017426732,0.00005693701,0.000014405741,0.0064691934],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988476,0.00048525914,0.00023789803,0.00012311804,0.00003196976,0.0002741511],"domain_scores_gemma":[0.99911624,0.00022509135,0.0001207496,0.00039699292,0.00013295881,0.000007959247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006524163,0.00012326222,0.00013044434,0.000043717326,0.00092946616,0.000036787576,0.00019190891,0.00017261456,0.00008524691],"category_scores_gemma":[0.00033326057,0.00009249476,0.00010478202,0.000097003394,0.000129415,0.0001395358,0.00003064358,0.00017787304,0.00022629603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000516985,0.000032317745,0.000016339074,0.000009262313,0.00009050692,1.3158964e-7,0.00038000726,0.0000011955151,0.9812805,0.0042744637,0.0017581057,0.011640153],"study_design_scores_gemma":[0.0008920878,0.00006855795,0.00091215613,0.000011706562,0.000012664953,0.0000048205493,0.00035390738,0.0000033739743,0.6901032,0.00054065714,0.3070119,0.00008503095],"about_ca_topic_score_codex":0.0002329179,"about_ca_topic_score_gemma":0.000006870797,"teacher_disagreement_score":0.30525377,"about_ca_system_score_codex":0.0000728567,"about_ca_system_score_gemma":0.00017385953,"threshold_uncertainty_score":0.71487963},"labels":[],"label_agreement":null},{"id":"W2097082261","doi":"10.1111/j.1462-5822.2007.01062.x","title":"The pattern-recognition molecule Nod1 is localized at the plasma membrane at sites of bacterial interaction","year":2007,"lang":"en","type":"article","venue":"Cellular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":165,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Federation of European Biochemical Societies","keywords":"NOD1; Biology; Cell biology; Peptidoglycan; Cytoskeleton; NOD2; Actin; Actin cytoskeleton; Cytosol; Innate immune system; Cell; Biochemistry; Receptor; Gene","score_opus":0.011125912011225354,"score_gpt":0.21904537833083662,"score_spread":0.20791946631961128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097082261","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948395,0.002063889,0.00027869936,0.00035757583,0.0016469512,0.00033595148,0.000065103624,0.00003026265,0.00038208897],"genre_scores_gemma":[0.9926687,0.00019432223,0.000010108156,0.00021004581,0.000059150967,0.000014575673,0.0030232053,0.000018896053,0.0038010355],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818355,0.00051194377,0.00057842757,0.00027536153,0.000023011498,0.00042772695],"domain_scores_gemma":[0.99847585,0.00062243076,0.00037494398,0.00038567104,0.0001288014,0.0000123237005],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008190249,0.00021363384,0.0002715434,0.00008917334,0.0004956026,0.0000138504165,0.00026528828,0.0004254589,0.0034489739],"category_scores_gemma":[0.00008646363,0.00013459778,0.00018047889,0.000106395695,0.0005141893,0.000060690516,0.00021562923,0.00026667782,0.0027496088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019956816,0.00004036467,0.00007959482,0.000013768268,0.00018968125,0.0000033725682,0.0005388239,9.574238e-7,0.98208284,0.0000071055833,0.003846208,0.011201596],"study_design_scores_gemma":[0.0011131201,0.00011547198,0.000105020976,0.000014141943,0.00004931488,0.00018127427,0.00015623287,0.0000042139773,0.7562596,0.000006063185,0.24187611,0.000119424105],"about_ca_topic_score_codex":0.00006458452,"about_ca_topic_score_gemma":0.00020471528,"teacher_disagreement_score":0.2380299,"about_ca_system_score_codex":0.00011614094,"about_ca_system_score_gemma":0.000028592302,"threshold_uncertainty_score":0.99802685},"labels":[],"label_agreement":null},{"id":"W2097184817","doi":"10.1189/jlb.0510265","title":"Membrane CD14, but not soluble CD14, is used by exoenzyme S from<i>P. aeruginosa</i>to signal proinflammatory cytokine production","year":2011,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"University of Calgary; Cystic Fibrosis Foundation","keywords":"Proinflammatory cytokine; Biology; CD14; Cytokine; Exoenzyme; Microbiology; Immunology; Biochemistry; Immune system; Enzyme; Inflammation","score_opus":0.025411384410302978,"score_gpt":0.23344632077963737,"score_spread":0.2080349363693344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097184817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919873,0.0020608518,0.00080112193,0.0013493572,0.0029731442,0.0003895871,0.00003603831,0.000059690614,0.00034289798],"genre_scores_gemma":[0.99457616,0.00031305378,0.0004916967,0.00057377975,0.00047490624,0.000020184492,0.000094157935,0.000039541188,0.0034165494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99700534,0.0006012987,0.0012502319,0.00042866362,0.00010408113,0.000610392],"domain_scores_gemma":[0.99797153,0.00015127602,0.000986765,0.00042146805,0.00037575635,0.000093183015],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0009950607,0.0003709856,0.0007776175,0.00040341262,0.00020384656,0.00001973042,0.0005399305,0.00056832924,0.0017517437],"category_scores_gemma":[0.00021343416,0.00030666683,0.0002715142,0.0001948094,0.0002446506,0.00038766727,0.000119290926,0.0006894536,0.0008879364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004388885,0.00016262189,0.00063442934,0.00001601173,0.00043550722,0.000031462372,0.0018585506,0.0000030255178,0.9642348,0.000079654885,0.0259759,0.0021791225],"study_design_scores_gemma":[0.0018546011,0.0010531473,0.001285966,0.00005935881,0.000107703236,0.0004493588,0.00022930493,0.0000021357391,0.87493217,0.000116788826,0.11960938,0.00030010755],"about_ca_topic_score_codex":0.00025565276,"about_ca_topic_score_gemma":0.00001972953,"teacher_disagreement_score":0.09363347,"about_ca_system_score_codex":0.00016414531,"about_ca_system_score_gemma":0.00031495257,"threshold_uncertainty_score":0.99993855},"labels":[],"label_agreement":null},{"id":"W2097364950","doi":"10.1084/jem.20111354","title":"A genomic storm in critically injured humans","year":2011,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1223,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences","keywords":"Transcriptome; Immune system; Innate immune system; Inflammation; Gene; Immunology; Biology; Systemic inflammatory response syndrome; Cytokine storm; Medicine; Gene expression; Bioinformatics; Genetics; Sepsis; Internal medicine; Disease","score_opus":0.028205291456140303,"score_gpt":0.2859954687068848,"score_spread":0.2577901772507445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097364950","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98439974,0.0119362855,0.000032610118,0.0004785145,0.0005695089,0.00007864568,2.1927973e-7,0.0000043224622,0.0025001285],"genre_scores_gemma":[0.99925745,0.00012330165,0.000034858767,0.00031355457,0.00006506157,0.0000016577628,0.0000012976147,0.000006424144,0.00019637785],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991117,0.00022695569,0.00042379345,0.000042680385,0.000039869075,0.00015499968],"domain_scores_gemma":[0.9995927,0.00007939572,0.00014419226,0.00011524504,0.00005348003,0.000014982215],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008012504,0.00007895397,0.00019776149,0.00012461771,0.000055185996,0.0000012217448,0.00020965208,0.000058344365,0.001721671],"category_scores_gemma":[0.00009624299,0.000044517576,0.000035142133,0.00005546437,0.0002515279,0.00007889376,0.000030110838,0.00023789355,0.00006402817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013891256,0.000095514864,0.00038068663,0.0000016747008,0.000039129493,0.000011737233,0.017151235,8.6152376e-8,0.97911054,0.00051527715,0.00078733615,0.00051767466],"study_design_scores_gemma":[0.0026109053,0.0020092244,0.041517653,0.000107934065,0.000036224814,0.00039876704,0.011510589,4.8936477e-7,0.9388624,0.00021040266,0.0026664382,0.00006901283],"about_ca_topic_score_codex":0.00010265288,"about_ca_topic_score_gemma":0.000008111775,"teacher_disagreement_score":0.04113697,"about_ca_system_score_codex":0.00006493787,"about_ca_system_score_gemma":0.000031854986,"threshold_uncertainty_score":0.99919087},"labels":[],"label_agreement":null},{"id":"W2097495458","doi":"10.4049/jimmunol.1003789","title":"<i>Escherichia coli</i> Heat-Labile Enterotoxin Promotes Protective Th17 Responses against Infection by Driving Innate IL-1 and IL-23 Production","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Inflammasome; Heat-labile enterotoxin; Enterotoxin; Adjuvant; Innate immune system; CD80; Pertussis toxin; Microbiology; CD86; MAPK/ERK pathway; Bordetella pertussis; Immunology; Chemistry; Biology; Immune system; Escherichia coli; Inflammation; T cell; Signal transduction; Cell biology; In vitro; CD40; Cytotoxic T cell; Biochemistry; G protein","score_opus":0.011677642104225783,"score_gpt":0.21975402861717033,"score_spread":0.20807638651294455,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097495458","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99292797,0.0042095515,0.00031889856,0.0007009988,0.0009407433,0.00070692005,0.0000052803075,0.000043042564,0.00014661337],"genre_scores_gemma":[0.99645555,0.0026706504,0.000058536843,0.00008612522,0.000051393574,0.00004249129,0.000008876408,0.000024024195,0.0006023437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99682266,0.001968248,0.0006407838,0.00017926485,0.000055851222,0.00033318446],"domain_scores_gemma":[0.99862564,0.00020080584,0.00057896227,0.00028024518,0.00029694143,0.000017411103],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017685469,0.00022985376,0.0003712741,0.00024199754,0.00040210725,0.000018475219,0.00023419593,0.0002804855,0.000051043542],"category_scores_gemma":[0.00065215735,0.00015991897,0.000086331456,0.00020794397,0.000504607,0.00043424356,0.000111421,0.0008203747,0.00005662637],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0041114134,0.00016697885,0.000970909,0.00001368292,0.00042693655,0.0000030851738,0.0038969035,0.0000019951417,0.9842562,0.000025326915,0.00070307736,0.00542348],"study_design_scores_gemma":[0.0010596247,0.0019052287,0.0329887,0.00011012207,0.000085758256,0.00071557076,0.00054529816,0.0000025715046,0.95395076,0.0002162391,0.008254717,0.00016539595],"about_ca_topic_score_codex":0.00013302159,"about_ca_topic_score_gemma":0.000018401917,"teacher_disagreement_score":0.032017794,"about_ca_system_score_codex":0.00008724523,"about_ca_system_score_gemma":0.000109869645,"threshold_uncertainty_score":0.6521306},"labels":[],"label_agreement":null},{"id":"W2097895350","doi":"10.1189/jlb.70.6.977","title":"Toll-like receptor 4-mediated activation of murine mast cells","year":2001,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; TLR2; TLR4; Toll-like receptor; Mast cell; Tumor necrosis factor alpha; Receptor; Cytokine; Cell biology; Lipopolysaccharide; Immunology; CD14; Interleukin 33; Microbiology; Signal transduction; Innate immune system; Immune system; Interleukin","score_opus":0.011723401049360496,"score_gpt":0.237001909505391,"score_spread":0.22527850845603048,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2097895350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958643,0.0010826563,0.0005445702,0.0004737106,0.0014421402,0.000092664115,0.000004824106,0.000012551571,0.00048259052],"genre_scores_gemma":[0.9969022,0.0012462783,0.00017658468,0.00011741708,0.0001307603,0.0000018345477,0.00006813649,0.000010937556,0.001345823],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851835,0.00034528677,0.0007611094,0.000108912245,0.000035842117,0.00023051914],"domain_scores_gemma":[0.9984279,0.0002708904,0.0008622992,0.00015385768,0.00026366036,0.00002138776],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00050201395,0.00013451492,0.00040699742,0.00030347548,0.00005645056,0.000004098856,0.00020760919,0.00032276966,0.0010100496],"category_scores_gemma":[0.00016776766,0.000104358005,0.00014400332,0.00016278763,0.00014413374,0.00015845959,0.000038372862,0.00029908333,0.00021949761],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020815565,0.0000900302,0.0011188855,0.000009026207,0.00017219133,0.000005124637,0.00014466199,0.000011274678,0.98695683,0.00010063918,0.0037502442,0.005559553],"study_design_scores_gemma":[0.0015758217,0.0007071624,0.0025342717,0.000034903413,0.000020153218,0.00019854202,0.00010694865,0.0000031434963,0.7304412,0.00003769936,0.26425588,0.00008425473],"about_ca_topic_score_codex":0.000021649485,"about_ca_topic_score_gemma":0.0000018617837,"teacher_disagreement_score":0.26050565,"about_ca_system_score_codex":0.00007320824,"about_ca_system_score_gemma":0.0001358882,"threshold_uncertainty_score":0.99990314},"labels":[],"label_agreement":null},{"id":"W2098431365","doi":"10.3109/10799890903295127","title":"Kinome analysis of Toll-like receptor signaling in bovine monocytes","year":2009,"lang":"en","type":"article","venue":"Journal of Receptors and Signal Transduction","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Genome Canada","keywords":"TLR9; TLR4; Signal transduction; Phosphorylation; Cell biology; Receptor; Biology; Toll-like receptor; Kinome; Lipopolysaccharide; Innate immune system; Immunology; Gene; Biochemistry; Gene expression","score_opus":0.009982006642454893,"score_gpt":0.23267359391325204,"score_spread":0.22269158727079716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098431365","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935038,0.004540705,0.0010596723,0.00034204536,0.00043716526,0.00006821176,0.0000024652848,0.000005992437,0.00003991883],"genre_scores_gemma":[0.9983759,0.0011115713,0.00023641344,0.00002417275,0.00005067111,6.7940397e-7,0.000019996984,0.000004750149,0.00017583219],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872094,0.00021131252,0.00073732616,0.00011440029,0.00006496311,0.00015103306],"domain_scores_gemma":[0.99931216,0.00008492491,0.00038914316,0.0000672507,0.00012566603,0.000020867157],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068903784,0.00012023752,0.00048629197,0.0008858238,0.000053408752,0.0000109467155,0.000083081686,0.00015900959,0.00081074104],"category_scores_gemma":[0.000022174401,0.000100223566,0.00022284196,0.00054628815,0.000060140355,0.0002802454,0.0000035306894,0.00024597908,0.0000032536484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015188665,0.000105409614,0.0015360056,0.000010027488,0.00044693286,0.000001684847,0.0010019429,0.00068747415,0.95909876,0.000073162664,0.00011221054,0.035407502],"study_design_scores_gemma":[0.0019380873,0.0021014754,0.02385701,0.00013728763,0.0007595107,0.00007631967,0.0010278678,0.000088314395,0.961113,0.00015976813,0.008523473,0.0002179183],"about_ca_topic_score_codex":0.000020288324,"about_ca_topic_score_gemma":0.0000043067703,"teacher_disagreement_score":0.035189584,"about_ca_system_score_codex":0.000040133735,"about_ca_system_score_gemma":0.000040501927,"threshold_uncertainty_score":0.8877046},"labels":[],"label_agreement":null},{"id":"W2098444662","doi":"10.1051/vetres:2003006","title":"Recombinant bovine soluble CD14 reduces severityof experimental <i>Escherichia coli</i> mastitis in mice","year":2003,"lang":"en","type":"article","venue":"Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"U.S. Department of Agriculture","keywords":"Lipopolysaccharide; Escherichia coli; Biology; Microbiology; Recombinant DNA; Mastitis; Bacteria; Mammary gland; Pathogenesis; CD14; Tumor necrosis factor alpha; Lipopolysaccharide binding protein; Internal medicine; Immunology; Andrology; Flow cytometry; Medicine; Biochemistry","score_opus":0.07140307182251082,"score_gpt":0.3435138257828599,"score_spread":0.27211075396034906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098444662","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.983041,0.0039612767,0.0000042688243,0.0002646707,0.0008994305,0.00037987606,0.000002602364,0.00004009875,0.011406778],"genre_scores_gemma":[0.9828729,0.0003013611,0.00014290682,0.00003944834,0.000018401293,0.00013311433,0.00004396347,0.000023879269,0.016424045],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968282,0.0016137861,0.00035285013,0.0003665364,0.000103652645,0.00073497073],"domain_scores_gemma":[0.99935186,0.00019411578,0.00004999495,0.00028070252,0.000089558416,0.000033753633],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0015689979,0.00016849654,0.00025163748,0.00029967545,0.00031043557,0.000040383118,0.00028102484,0.00022242626,0.0015278884],"category_scores_gemma":[0.00017934557,0.00016916293,0.00006034677,0.0004514419,0.0002631353,0.00025592998,0.00016860101,0.00059937005,0.0010271115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001316607,0.0003278779,0.00016024106,0.000022301198,0.000026102845,0.00012577129,0.00059126655,8.840106e-7,0.9906689,0.00044556355,0.0056339293,0.0006805775],"study_design_scores_gemma":[0.0012596945,0.0021246262,0.00089157914,0.000062802465,0.0000021095232,0.00027822985,0.00096954824,0.0000059580743,0.77967405,0.00006457153,0.21448779,0.0001790319],"about_ca_topic_score_codex":0.00023500895,"about_ca_topic_score_gemma":0.000010486322,"teacher_disagreement_score":0.21099481,"about_ca_system_score_codex":0.00015925529,"about_ca_system_score_gemma":0.0001828243,"threshold_uncertainty_score":0.99975073},"labels":[],"label_agreement":null},{"id":"W2098469346","doi":"10.4049/jimmunol.1002248","title":"The Role of CD14 in Neutrophil Recruitment within the Liver Microcirculation during Endotoxemia","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Innovates; Fondation pour la Recherche Médicale; University of Calgary","keywords":"CD14; Inflammation; Proinflammatory cytokine; Sepsis; Lipopolysaccharide; Immunology; Biology; Systemic inflammation; TLR4; Knockout mouse; Medicine; Internal medicine; Immune system; Receptor","score_opus":0.022023993473594447,"score_gpt":0.22038684297611535,"score_spread":0.19836284950252092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098469346","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9670935,0.031485196,0.000011478727,0.00030918594,0.00046152217,0.00026169297,4.848333e-7,0.000004693403,0.0003722433],"genre_scores_gemma":[0.99697095,0.0027864417,0.000013871267,0.000025061645,0.00002428419,0.00000913384,0.0000012011815,0.000008865495,0.00016017159],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977981,0.0011705195,0.0007092673,0.00006332504,0.000042495416,0.00021633653],"domain_scores_gemma":[0.998323,0.00038010633,0.0008455219,0.0003155527,0.00013063599,0.0000051468683],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015160302,0.00011331695,0.00021669394,0.00010832407,0.0002754458,0.000005553775,0.0005406486,0.00014433636,0.00006589551],"category_scores_gemma":[0.00011881044,0.00005304819,0.000101161,0.000120119825,0.00039404407,0.00010400659,0.000092861126,0.0005702978,0.00004307797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002442109,0.00004609932,0.000761164,0.0000031107468,0.0002638774,0.0000038286366,0.00859359,0.00003401854,0.9816071,0.0018130969,0.000016416385,0.0044156006],"study_design_scores_gemma":[0.0009879168,0.00027403474,0.108200654,0.000040888455,0.000060471015,0.00086352526,0.0034448318,0.0000053340864,0.88205254,0.0014741769,0.0025345003,0.00006112826],"about_ca_topic_score_codex":0.00017544939,"about_ca_topic_score_gemma":0.000032892847,"teacher_disagreement_score":0.10743949,"about_ca_system_score_codex":0.00006723247,"about_ca_system_score_gemma":0.00008647812,"threshold_uncertainty_score":0.24776919},"labels":[],"label_agreement":null},{"id":"W2098797664","doi":"10.1016/j.bbamcr.2006.08.003","title":"Differential regulation of lipopolysaccharide and Gram-positive bacteria induced cytokine and chemokine production in splenocytes by Gαi proteins","year":2006,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Molecular Cell Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Splenocyte; Chemokine; Cytokine; Lipopolysaccharide; TLR4; TLR2; CXCL10; Chemistry; Molecular biology; Biology; Immunology; Spleen; Inflammation","score_opus":0.011954313876037848,"score_gpt":0.2587415444299618,"score_spread":0.24678723055392393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098797664","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784577,0.0003253527,0.000025447114,0.0006876302,0.00006203271,0.00087674684,0.000024063174,0.000023455857,0.00012951513],"genre_scores_gemma":[0.998842,0.00017083566,0.000069403606,0.0000088171355,0.000039911716,0.00006089614,0.0005197533,0.00002893049,0.00025947933],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977624,0.0007956487,0.0003959958,0.0004982158,0.00015377378,0.00039396645],"domain_scores_gemma":[0.9992195,0.000106360865,0.00017395765,0.0003123947,0.00016207056,0.00002572204],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047986567,0.00022412415,0.0003133567,0.00037827346,0.00014541834,0.000053218468,0.00014720802,0.00028622485,0.000030643914],"category_scores_gemma":[0.00008874542,0.00021253765,0.000054462038,0.0003188234,0.0004318362,0.00017147811,0.00018171108,0.00045420518,0.000007901319],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00089430955,0.00032446434,0.00001756,0.00007705439,0.000044639222,0.0000018891827,0.00025207197,3.8246083e-7,0.9969357,0.00021883259,0.000117009855,0.001116043],"study_design_scores_gemma":[0.0010947101,0.00037292758,0.026204754,0.00007605349,0.000023748695,0.000006934243,0.00005485627,0.00001765192,0.9716143,0.00028420961,0.00005756517,0.00019228813],"about_ca_topic_score_codex":0.0007361066,"about_ca_topic_score_gemma":0.000009546021,"teacher_disagreement_score":0.026187195,"about_ca_system_score_codex":0.00005948579,"about_ca_system_score_gemma":0.000073769916,"threshold_uncertainty_score":0.8667034},"labels":[],"label_agreement":null},{"id":"W2098980327","doi":"10.1128/iai.01549-06","title":"Role of<scp>d</scp>-Alanylation of<i>Streptococcus gordonii</i>Lipoteichoic Acid in Innate and Adaptive Immunity","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Izaak Walton Killam Health Centre; Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipoteichoic acid; Biology; Streptococcus gordonii; Innate immune system; Acquired immune system; Immunity; Microbiology; Streptococcus; Immunology; Bacteria; Immune system; Genetics; Staphylococcus aureus","score_opus":0.008150995476471423,"score_gpt":0.23257301953014953,"score_spread":0.22442202405367812,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2098980327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99316335,0.0029522423,0.00026512513,0.000008642129,0.00015495069,0.0002816122,0.0000061407763,0.000033348824,0.003134573],"genre_scores_gemma":[0.99911743,0.0006308288,0.000025542453,0.000013169188,0.000009524199,0.000009061076,0.00004749024,0.000009346853,0.00013762977],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99861795,0.00045688273,0.00051689235,0.00014237763,0.000039834667,0.00022606763],"domain_scores_gemma":[0.99889046,0.00041159178,0.00030501516,0.00022849382,0.00014541848,0.000019030796],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011934354,0.00015978617,0.0003014884,0.00039753364,0.00017009805,0.000009478635,0.0000709085,0.0002916898,0.000025769723],"category_scores_gemma":[0.00040396184,0.00015811631,0.00005723202,0.00032815713,0.00026843982,0.000289239,0.000098110504,0.00045663264,0.000013071901],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021458852,0.00012573553,0.08094389,0.0000290691,0.000069280504,3.827567e-7,0.0021989443,0.0000064051756,0.88424385,0.00055890006,0.000011353925,0.031597577],"study_design_scores_gemma":[0.0007774374,0.00022735346,0.5375548,0.00004080746,0.000015359617,0.0000140679085,0.000815233,0.000016170092,0.45822048,0.00026556957,0.002005213,0.000047468126],"about_ca_topic_score_codex":0.0027380704,"about_ca_topic_score_gemma":0.00034191975,"teacher_disagreement_score":0.45661095,"about_ca_system_score_codex":0.00003776457,"about_ca_system_score_gemma":0.00004278986,"threshold_uncertainty_score":0.64477956},"labels":[],"label_agreement":null},{"id":"W2099065204","doi":"10.1128/iai.72.8.4561-4569.2004","title":"Toll-Like Receptor 2 Represses Nonpilus Adhesin-Induced Signaling in Acute Infections with the <i>Pseudomonas aeruginosa pilA</i> Mutant","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"American Heart Association","keywords":"Bacterial adhesin; Biology; Microbiology; Pilus; Pseudomonas aeruginosa; Mutant; TLR2; Flagellin; Receptor; Immune system; Toll-like receptor; Innate immune system; Gene; Immunology; Virulence; Bacteria; Genetics","score_opus":0.010218589809950029,"score_gpt":0.23096838854008772,"score_spread":0.2207497987301377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099065204","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99635714,0.00041324153,0.00036812425,0.0008760866,0.0005458604,0.00039698547,0.000004758991,0.0001253614,0.00091241824],"genre_scores_gemma":[0.99882406,0.0005488455,0.000024564795,0.0002294491,0.000027062575,0.000073773335,0.00005231483,0.000017154416,0.0002028049],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986149,0.00046787906,0.00032344763,0.0002390235,0.00005057368,0.00030418418],"domain_scores_gemma":[0.9991377,0.00019986035,0.00016267342,0.00037109948,0.00010684656,0.000021836564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004941965,0.00022530844,0.00025363208,0.00020369596,0.0007872113,0.000063556276,0.000111289344,0.00022287379,0.00010537901],"category_scores_gemma":[0.000083364874,0.00015997788,0.000071599454,0.00041671513,0.00019926466,0.00036438293,0.00007562164,0.00075998425,0.00013971899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044082315,0.00020874228,0.0021316754,0.000011670461,0.00016323532,0.000005551,0.0012643767,0.00012658241,0.9927373,0.0002190505,0.000095836534,0.0025951597],"study_design_scores_gemma":[0.0028107872,0.00074039714,0.02714169,0.000116062976,0.00008820704,0.0005198889,0.00051125133,0.0000023037655,0.94893354,0.00009974417,0.018738406,0.00029770247],"about_ca_topic_score_codex":0.0029479363,"about_ca_topic_score_gemma":0.00074945006,"teacher_disagreement_score":0.043803737,"about_ca_system_score_codex":0.000106860156,"about_ca_system_score_gemma":0.00014178093,"threshold_uncertainty_score":0.6523708},"labels":[],"label_agreement":null},{"id":"W2099214157","doi":"10.1089/108729001753231713","title":"CpG Motif Identification for Veterinary and Laboratory Species Demonstrates That Sequence Recognition Is Highly Conserved","year":2001,"lang":"en","type":"article","venue":"Antisense and Nucleic Acid Drug Development","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":234,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Biology; Immunostimulant; CpG Oligodeoxynucleotide; CpG site; Computational biology; Immune system; Conserved sequence; In vitro; DNA sequencing; Sequence motif; DNA; Immunology; Genetics; Gene; Base sequence; DNA methylation; Gene expression","score_opus":0.04572298829093271,"score_gpt":0.2480118923916766,"score_spread":0.20228890410074388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099214157","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960089,0.0021843577,0.00018865491,0.0008403699,0.0002580686,0.00032242356,0.000037330028,0.00006170353,0.000098215096],"genre_scores_gemma":[0.9944644,0.0026613008,0.00056415115,0.0002702851,0.000016827948,0.000055089207,0.0002639528,0.00001507234,0.0016889118],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989804,0.00010970411,0.0003240139,0.00030496792,0.00004004898,0.00024088571],"domain_scores_gemma":[0.9994681,0.000104591534,0.00014707526,0.00013660608,0.00011801619,0.000025598842],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036002006,0.0001781732,0.00019911092,0.00011036061,0.00041886032,0.000059885286,0.00006470582,0.00013379367,0.000093078816],"category_scores_gemma":[0.0000378566,0.00017170653,0.000029756065,0.00009125131,0.0001911518,0.0002877748,0.00004736067,0.00008849736,0.00013085583],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000283321,0.0000304014,0.0022002484,0.000049440812,0.00008538314,0.000013681827,0.0014358553,3.8825466e-8,0.9600421,0.000066862376,0.0025554597,0.033237167],"study_design_scores_gemma":[0.0008034005,0.000061233026,0.04585652,0.00008333614,0.000031924243,0.00017177571,0.00085230696,0.000011286404,0.884097,0.00016447317,0.067626886,0.00023986792],"about_ca_topic_score_codex":0.000011018003,"about_ca_topic_score_gemma":0.000006219292,"teacher_disagreement_score":0.075945154,"about_ca_system_score_codex":0.000027785702,"about_ca_system_score_gemma":0.00008368111,"threshold_uncertainty_score":0.70019895},"labels":[],"label_agreement":null},{"id":"W2099226585","doi":"10.1128/jvi.01036-06","title":"Induction of Innate Immunity against Herpes Simplex Virus Type 2 Infection via Local Delivery of Toll-Like Receptor Ligands Correlates with Beta Interferon Production","year":2006,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Innate immune system; TLR2; Herpes simplex virus; TLR3; Interferon; Immunology; Virology; Tumor necrosis factor alpha; TLR9; TLR4; Alpha interferon; Interferon type I; Interferon gamma; Toll-like receptor; Cytokine; Virus; Inflammation; Immune system","score_opus":0.007189988796909921,"score_gpt":0.21272470144268915,"score_spread":0.20553471264577922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099226585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99595827,0.0011038332,0.0010032102,0.00015360929,0.0015968562,0.00011944697,0.0000022975103,0.000013173498,0.000049319096],"genre_scores_gemma":[0.99906623,0.00060112606,0.000038891576,0.000022812625,0.00009173591,0.0000018085017,0.00005265676,0.000013791418,0.00011097302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847114,0.00035680737,0.00081178726,0.00012326083,0.000059266276,0.00017774267],"domain_scores_gemma":[0.99812496,0.00007967321,0.0011354679,0.0001684713,0.00047966916,0.000011733506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005634478,0.0001548753,0.0004444912,0.0003886286,0.000087930806,0.000004242613,0.00011125164,0.0003633058,0.00007318591],"category_scores_gemma":[0.000047203746,0.000123032,0.00009760221,0.00024046785,0.000353845,0.00031634985,0.000038748807,0.00044080324,0.00001865997],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007841081,0.0002958396,0.0020228596,0.000029203064,0.00028710472,0.000002215263,0.00026298378,0.001036206,0.9539302,0.00002637077,0.0005699219,0.033696033],"study_design_scores_gemma":[0.0012553497,0.0037310726,0.02616105,0.00008451652,0.00011848919,0.00034101904,0.00012476163,0.000026142807,0.96292734,0.00007014314,0.0050473427,0.00011279694],"about_ca_topic_score_codex":0.0003434504,"about_ca_topic_score_gemma":0.00009682502,"teacher_disagreement_score":0.03358324,"about_ca_system_score_codex":0.000075081065,"about_ca_system_score_gemma":0.000100748795,"threshold_uncertainty_score":0.50170994},"labels":[],"label_agreement":null},{"id":"W2099456894","doi":"10.1111/j.1600-0897.2008.00652.x","title":"ORIGINAL ARTICLE: Ecology of Danger‐Dependent Cytokine‐Boosted Spontaneous Abortion in the CBA × DBA/2 Mouse Model: II Fecal LPS Levels in Colonies with Different Basal Abortion Rates","year":2008,"lang":"en","type":"article","venue":"American Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cytokine; Biology; Abortion; Lipopolysaccharide; Endogeny; Endocrinology; Tumor necrosis factor alpha; Abortifacient; Andrology; Internal medicine; Immunology; Pregnancy; Medicine","score_opus":0.011273844698014807,"score_gpt":0.24493312081533275,"score_spread":0.23365927611731793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099456894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967436,0.0009029923,0.00026112958,0.0013883251,0.00026396793,0.00038813637,0.000012046406,0.000014354141,0.000025412743],"genre_scores_gemma":[0.9989944,0.00049989216,0.00013424506,0.000075499316,0.000046406833,0.00003322207,0.000017502363,0.000021458922,0.00017737382],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963467,0.0015544925,0.0010996803,0.00038583306,0.00013659368,0.00047666833],"domain_scores_gemma":[0.99748534,0.00033657844,0.0012587218,0.00046173748,0.0004396724,0.000017956638],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010239617,0.0002856671,0.0008724053,0.00057244115,0.00018380942,0.0000072940243,0.00038076172,0.00017817525,0.000042451902],"category_scores_gemma":[0.0003411411,0.00019456708,0.00010764932,0.0004954388,0.0014519563,0.0002752924,0.00007289518,0.0008685189,0.000008756352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014722343,0.0009174362,0.04546885,0.0000093652925,0.00042353696,0.00042575743,0.008885402,0.0026274554,0.92222196,0.00028882778,0.00004429936,0.0039647897],"study_design_scores_gemma":[0.0027940916,0.006632584,0.4318605,0.00004778375,0.000070691596,0.0092353625,0.0035500433,0.00004922931,0.5452273,0.00013755495,0.00016934006,0.00022554323],"about_ca_topic_score_codex":0.00028407303,"about_ca_topic_score_gemma":0.0002627327,"teacher_disagreement_score":0.38639167,"about_ca_system_score_codex":0.00027372595,"about_ca_system_score_gemma":0.00034857373,"threshold_uncertainty_score":0.79342157},"labels":[],"label_agreement":null},{"id":"W2099633666","doi":"10.1161/circulationaha.105.536433","title":"Myeloid Differentiation Factor-88 Plays a Crucial Role in the Pathogenesis of Coxsackievirus B3–Induced Myocarditis and Influences Type I Interferon Production","year":2005,"lang":"en","type":"article","venue":"Circulation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":178,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Canadian Institutes of Health Research; Bayer Yakuhin; Japan Heart Foundation; University of Toronto; Heart and Stroke Foundation of Canada","keywords":"Myocarditis; Cytokine; Medicine; Tumor necrosis factor alpha; Interferon; Immunology; Inflammation; Pathogenesis; Viral Myocarditis; Internal medicine","score_opus":0.017992871292746283,"score_gpt":0.23798951704458757,"score_spread":0.21999664575184127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2099633666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99820936,0.00094703794,0.000053111144,0.00014563384,0.00026330134,0.00028244217,0.0000035721798,0.00001674353,0.00007882854],"genre_scores_gemma":[0.9996754,0.00010418945,0.0000071754434,0.000021959759,0.000071900286,0.000016774426,0.00008528766,0.000006122,0.000011223339],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99909395,0.00028523235,0.0002926794,0.00016416851,0.000049116567,0.000114846596],"domain_scores_gemma":[0.9995684,0.00004828441,0.0001596736,0.00014558625,0.0000729671,0.0000051072225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023273287,0.000095831274,0.000143358,0.0001294305,0.00009486759,0.00001574237,0.00007152033,0.00014591501,0.000043420663],"category_scores_gemma":[0.00012154983,0.0000774622,0.00003399317,0.0001531539,0.000044785516,0.00025762207,0.00001637689,0.00010325326,0.000030314763],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015514372,0.000029189305,0.028365768,0.000010589974,0.00002319402,1.14562134e-7,0.002635563,0.00011146187,0.8915471,0.00007790961,0.0000073329206,0.07703668],"study_design_scores_gemma":[0.00029034042,0.000060225,0.8485352,0.0000276796,0.00002028063,0.000008811923,0.0002854365,0.00010164995,0.15036021,0.000057547633,0.00017977261,0.000072834075],"about_ca_topic_score_codex":0.00009050716,"about_ca_topic_score_gemma":0.00006014731,"teacher_disagreement_score":0.82016945,"about_ca_system_score_codex":0.000040714003,"about_ca_system_score_gemma":0.000026563708,"threshold_uncertainty_score":0.3158817},"labels":[],"label_agreement":null},{"id":"W2100968482","doi":"10.1186/1476-9255-9-31","title":"Doxycycline impairs neutrophil migration to the airspaces of the lung in mice exposed to intratracheal lipopolysaccharide","year":2012,"lang":"en","type":"article","venue":"Journal of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Bronchoalveolar lavage; Doxycycline; Medicine; Immunology; Lipopolysaccharide; Lung; Tetracycline; Antibiotics; Biology; Microbiology; Internal medicine","score_opus":0.008387242862459869,"score_gpt":0.24106970042959525,"score_spread":0.23268245756713538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2100968482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9819505,0.0007816489,0.00048147628,0.015446829,0.0009296866,0.00035309323,0.0000015895612,0.000005849343,0.000049296686],"genre_scores_gemma":[0.999285,0.00005139203,0.00011098647,0.00014590632,0.0002983655,0.000009540048,0.000003961683,0.0000079373085,0.00008693944],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99838877,0.00042192196,0.0008039428,0.000066542,0.000099345365,0.00021949153],"domain_scores_gemma":[0.9988009,0.00016790094,0.00062739477,0.00017939124,0.00019705402,0.000027376142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015749566,0.000113363676,0.0002089602,0.0002549025,0.000099389705,0.000016684706,0.00027215367,0.00012468686,0.00003393278],"category_scores_gemma":[0.000470921,0.00006555013,0.00011204987,0.00028515115,0.00003423832,0.00045780558,0.000045516168,0.0002999519,0.000040197985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061437016,0.000039822546,0.0051042354,0.000013383658,0.00004116878,3.867422e-7,0.0064046285,0.0012302817,0.9796013,0.00032390453,0.0016111506,0.0050153644],"study_design_scores_gemma":[0.00054425845,0.00016536769,0.10686478,0.000101455,0.00003835753,0.00005740379,0.0011058715,0.0000530456,0.88534284,0.000024746194,0.0056240605,0.000077829274],"about_ca_topic_score_codex":0.000073604126,"about_ca_topic_score_gemma":0.00020190753,"teacher_disagreement_score":0.101760544,"about_ca_system_score_codex":0.00010095982,"about_ca_system_score_gemma":0.00009619544,"threshold_uncertainty_score":0.26730567},"labels":[],"label_agreement":null},{"id":"W2101205453","doi":"10.1096/fj.06-7457com","title":"The Toll‐like receptor 7/8‐ligand resiquimod (R‐848) primes human neutrophils for leukotriene B <sub>4</sub> , prostaglandin E <sub>2</sub> and platelet‐activating factor biosynthesis","year":2007,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research; Bundesministerium für Bildung und Forschung","keywords":"TLR7; Arachidonic acid; Lipid signaling; Platelet-activating factor; Toll-like receptor; Phospholipase A2; Innate immune system; Chemistry; Cell biology; Platelet activation; Leukotriene B4; Biology; Receptor; Biochemistry; Platelet; Inflammation; Immunology","score_opus":0.013683903613652978,"score_gpt":0.23637112301447558,"score_spread":0.2226872194008226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101205453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944977,0.002619177,0.00047831054,0.0008143934,0.00067051715,0.0007549481,0.000031162617,0.000057959216,0.000075794414],"genre_scores_gemma":[0.9981084,0.0010943956,0.00003918963,0.00010889453,0.00031821823,0.000026001402,0.000035194946,0.000048937734,0.00022079854],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99749446,0.0004549531,0.0007823659,0.00030281316,0.00012485731,0.00084057276],"domain_scores_gemma":[0.99715126,0.0016068239,0.0006304806,0.00036253358,0.00017895973,0.00006992207],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0024031384,0.0003525144,0.000393883,0.00020812362,0.0030978692,0.00020911537,0.00039135406,0.00033420633,0.000020014906],"category_scores_gemma":[0.00039080964,0.00021185218,0.0002039499,0.00017361528,0.0003963631,0.00031310203,0.00010671537,0.00078066305,0.0000426474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022028177,0.000040363208,0.00014611098,0.000016617252,0.00026648305,0.0000075068338,0.00094014383,0.0000023645607,0.9319619,0.00019349744,0.0010922151,0.06312999],"study_design_scores_gemma":[0.0018072154,0.00044273658,0.0034470346,0.00010392371,0.000043051627,0.00043213164,0.0008104389,0.0000040319474,0.9834711,0.0002889278,0.0088681225,0.00028126253],"about_ca_topic_score_codex":0.000007870006,"about_ca_topic_score_gemma":0.00001745234,"teacher_disagreement_score":0.062848724,"about_ca_system_score_codex":0.00014239749,"about_ca_system_score_gemma":0.00014785625,"threshold_uncertainty_score":0.99819994},"labels":[],"label_agreement":null},{"id":"W2101274502","doi":"10.4049/jimmunol.1201940","title":"Inhibitory Receptor Paired Ig-like Receptor B Is Exploited by <i>Staphylococcus aureus</i> for Virulence","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Lipoteichoic acid; Microbiology; Innate immune system; Virulence; Biology; Staphylococcus aureus; Immune system; Pattern recognition receptor; Receptor; Inflammasome; Bacteria; Inflammation; Immunology; Gene","score_opus":0.01257640459110575,"score_gpt":0.22789467896122628,"score_spread":0.21531827437012052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101274502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9398575,0.051064476,0.000829192,0.002755649,0.004909883,0.00040568953,0.000048198643,0.000041205712,0.00008820768],"genre_scores_gemma":[0.9898795,0.004324561,0.00025194202,0.00154701,0.00041777018,0.00004512236,0.000092513284,0.00005538918,0.0033861808],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972379,0.0009688129,0.00090290105,0.00013820651,0.0000768154,0.0006753235],"domain_scores_gemma":[0.9975473,0.00074701133,0.00090323086,0.00042832625,0.00033748907,0.00003658765],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019402001,0.0002729057,0.00049164565,0.00019944388,0.00036922155,0.000013400395,0.00064579805,0.00045447165,0.0008051333],"category_scores_gemma":[0.00030220026,0.00018876558,0.00025827525,0.00018666372,0.00042143284,0.00049445697,0.00010525374,0.00066360075,0.0006322389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023897183,0.0001291549,0.00012655211,0.000009586512,0.0004017343,2.0402028e-7,0.002105891,5.583059e-7,0.7446154,0.000052026247,0.24585019,0.00431899],"study_design_scores_gemma":[0.0013403633,0.00051551126,0.00020897748,0.000038014085,0.000070044385,0.000063657455,0.0012665882,4.2834492e-7,0.5630171,0.000029781715,0.43331078,0.0001388102],"about_ca_topic_score_codex":0.000027002916,"about_ca_topic_score_gemma":8.277734e-7,"teacher_disagreement_score":0.18746059,"about_ca_system_score_codex":0.0001125852,"about_ca_system_score_gemma":0.00011769236,"threshold_uncertainty_score":0.8815645},"labels":[],"label_agreement":null},{"id":"W2101649073","doi":"10.4049/jimmunol.1003414","title":"CpG and Non-CpG Oligodeoxynucleotides Directly Costimulate Mouse and Human CD4+ T Cells through a TLR9- and MyD88-Independent Mechanism","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; U.S. Public Health Service; National Institutes of Health; National Science Foundation","keywords":"TLR9; CpG Oligodeoxynucleotide; CD28; Cell biology; T-cell receptor; Biology; Cytokine; Jurkat cells; T cell; Downregulation and upregulation; CpG site; Secretion; Phosphorylation; Immunology; Immune system; Biochemistry; Gene; Gene expression","score_opus":0.014485254051950364,"score_gpt":0.22398230119587756,"score_spread":0.2094970471439272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101649073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911268,0.0071099214,0.00040049985,0.0002116094,0.0003700952,0.00019592681,0.0000034165366,0.000018765075,0.0005629862],"genre_scores_gemma":[0.99446195,0.004433165,0.00013696423,0.00013805293,0.000024353096,0.000004923274,0.000002346311,0.000022826547,0.00077538553],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983308,0.00054087775,0.0005769079,0.00016359007,0.000047179088,0.00034067285],"domain_scores_gemma":[0.9988505,0.00023945008,0.0005016597,0.0002618177,0.00012210618,0.00002441544],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009091457,0.00023658344,0.0004782275,0.00015959727,0.00039675977,0.000023158498,0.00026094072,0.00029217693,0.00020587751],"category_scores_gemma":[0.000050688835,0.00016169266,0.00006512989,0.000061752435,0.0005480855,0.000293039,0.00022813397,0.00056341494,0.00004189117],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011550505,0.00006447641,0.00018257351,0.000012874059,0.00051923457,0.00001824703,0.005066748,0.0000011338852,0.9884395,0.003188032,0.00014653541,0.0012055915],"study_design_scores_gemma":[0.0027700593,0.0014490446,0.01685773,0.000064965854,0.00024270313,0.0019104312,0.0011285252,0.0000046507016,0.9681387,0.005819247,0.0013949551,0.00021897114],"about_ca_topic_score_codex":0.000318628,"about_ca_topic_score_gemma":0.000020767966,"teacher_disagreement_score":0.020300787,"about_ca_system_score_codex":0.000025884,"about_ca_system_score_gemma":0.000037634934,"threshold_uncertainty_score":0.65936357},"labels":[],"label_agreement":null},{"id":"W2101907793","doi":"10.1084/jem.20060375","title":"Vascular endothelial growth factor is an important determinant of sepsis morbidity and mortality","year":2006,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":281,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"National Institute of Mental Health; National Heart, Lung, and Blood Institute","keywords":"Sepsis; Immunology; Pathophysiology; Vascular endothelial growth factor; Medicine; Biology; Internal medicine; VEGF receptors","score_opus":0.021445775808453905,"score_gpt":0.2911139653800529,"score_spread":0.269668189571599,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2101907793","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98854506,0.010773525,0.000030008341,0.00015480732,0.00031205706,0.000095722535,0.000007975461,0.0000040546956,0.00007678066],"genre_scores_gemma":[0.9992232,0.0005157146,0.00001594248,0.000069722526,0.00011490962,0.0000010101882,0.0000055038818,0.000007034355,0.00004700594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988616,0.00024173252,0.0006055586,0.00007004592,0.00009192572,0.0001291101],"domain_scores_gemma":[0.99917173,0.00009621903,0.00047183927,0.00016368386,0.000077035365,0.000019481477],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060868665,0.000115304676,0.00032141592,0.00007150524,0.000080325684,0.0000025539166,0.0001452697,0.00007048815,0.00037590202],"category_scores_gemma":[0.00005075796,0.00006270325,0.000070039285,0.00004601776,0.0003368716,0.00013142856,0.00003029813,0.00014260427,0.0000021484782],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035457176,0.00010118054,0.006372576,0.0000074937584,0.00010883375,0.0000069867465,0.00212761,1.6696463e-7,0.9903966,0.00006564654,0.0002670314,0.0001912756],"study_design_scores_gemma":[0.001456347,0.0010484677,0.08683204,0.000048009115,0.00009890131,0.00023618485,0.0011916036,0.0000042796196,0.9085361,0.00011279127,0.00037568875,0.00005962906],"about_ca_topic_score_codex":0.00092917064,"about_ca_topic_score_gemma":0.000007794545,"teacher_disagreement_score":0.081860565,"about_ca_system_score_codex":0.000023476921,"about_ca_system_score_gemma":0.000027977609,"threshold_uncertainty_score":0.41158634},"labels":[],"label_agreement":null},{"id":"W2102069697","doi":"10.1111/j.1469-7793.2003.00929.x","title":"Compromised neuroimmune status in rats with experimental colitis","year":2003,"lang":"en","type":"article","venue":"The Journal of Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Directorate for Biological Sciences; Alberta Heritage Foundation for Medical Research; University of Calgary","keywords":"Colitis; Lipopolysaccharide; Hypothermia; Tumor necrosis factor alpha; Circadian rhythm; Medicine; Inflammation; Internal medicine; Rectal temperature; Endocrinology; Immunology; Interleukin; Cytokine","score_opus":0.010200517307150485,"score_gpt":0.23395667439040996,"score_spread":0.22375615708325947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102069697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656117,0.0023902766,0.000011678257,0.000098621014,0.00029897137,0.000113988775,7.4315375e-7,0.0000045619904,0.0005200053],"genre_scores_gemma":[0.999494,0.00014125161,0.000022763801,0.00010667006,0.000013719517,0.0000027203937,0.0000038171715,0.000008182613,0.00020684091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982262,0.0011020628,0.0003281002,0.000063490224,0.000026491505,0.0002536044],"domain_scores_gemma":[0.99932116,0.00019711851,0.00026103723,0.00015079553,0.000058727837,0.000011169082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036744535,0.00010061148,0.0002595001,0.000085610525,0.000079447345,0.0000035198575,0.00014994193,0.00007022956,0.00034629038],"category_scores_gemma":[0.000043153777,0.0000587788,0.000044347104,0.000095430085,0.00019526677,0.00008576351,0.000018582296,0.00030309462,0.00004995656],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032812995,0.0001033598,0.000099759985,0.0000028620905,0.00005592326,0.000005956025,0.0008367437,0.00008391489,0.9946006,0.0005870851,0.00022945285,0.00011306258],"study_design_scores_gemma":[0.0030051528,0.0011556932,0.056673333,0.00002228331,0.000017044851,0.0004557948,0.0010049631,0.0000021650508,0.9299979,0.0001545782,0.0074312272,0.000079819125],"about_ca_topic_score_codex":0.000031173706,"about_ca_topic_score_gemma":0.0000050538274,"teacher_disagreement_score":0.064602636,"about_ca_system_score_codex":0.000036157813,"about_ca_system_score_gemma":0.00010080327,"threshold_uncertainty_score":0.37916368},"labels":[],"label_agreement":null},{"id":"W2102347003","doi":"10.1002/jlb.67.2.240","title":"Expression of serum- and glucocorticoid-regulated kinase (<i>sgk</i>) mRNA is up-regulated by GM-CSF and other proinflammatory mediators in human granulocytes","year":2000,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Regional Cancer Foundation; University of Ottawa","funders":"","keywords":"Biology; Proinflammatory cytokine; Cycloheximide; Molecular biology; Messenger RNA; Tumor necrosis factor alpha; Endocrinology; Protein biosynthesis; Inflammation; Biochemistry; Immunology; Gene","score_opus":0.006394569345851802,"score_gpt":0.23481584652178686,"score_spread":0.22842127717593505,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102347003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98758155,0.011664919,0.0000034016484,0.00017414034,0.00021111556,0.00023815688,0.000017337614,0.000014458013,0.000094947085],"genre_scores_gemma":[0.9981043,0.00097262126,0.00002327375,0.00013018084,0.000031252508,0.000003982488,0.000017474355,0.00002157001,0.0006953819],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99780107,0.00050840253,0.0010690459,0.0002374868,0.000056975605,0.00032701882],"domain_scores_gemma":[0.99882835,0.0001449174,0.0006659141,0.00020668503,0.000108772154,0.00004535768],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057495723,0.00024689586,0.0006569667,0.0003395272,0.0000926791,0.000011473464,0.00017922415,0.00050989416,0.00076837925],"category_scores_gemma":[0.000057433637,0.00019287966,0.00009633132,0.00014916415,0.00040572422,0.00020697032,0.000050638675,0.00037527242,0.0000163438],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014920247,0.000067663976,0.018339723,0.000041782994,0.00010134644,0.000008422727,0.00085475977,0.0000043064706,0.9686602,0.00004518966,0.00061859953,0.0097660115],"study_design_scores_gemma":[0.0048782267,0.0006517287,0.04129238,0.00018368523,0.000047916696,0.00022517146,0.00014137226,0.000013283794,0.93634963,0.00017149762,0.015844867,0.00020026029],"about_ca_topic_score_codex":0.0000671478,"about_ca_topic_score_gemma":0.000009209264,"teacher_disagreement_score":0.03231056,"about_ca_system_score_codex":0.000050549203,"about_ca_system_score_gemma":0.000096068485,"threshold_uncertainty_score":0.8413214},"labels":[],"label_agreement":null},{"id":"W2102484955","doi":"10.4049/jimmunol.0903014","title":"TLR4-Mediated Sensing of <i>Campylobacter jejuni</i> by Dendritic Cells Is Determined by Sialylation","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Research Council Canada; Directorate for Biological Sciences; Erasmus Medisch Centrum; Universiteit Utrecht","keywords":"Campylobacter jejuni; Campylobacter; Microbiology; TLR4; Chemistry; Biology; Cell biology; Bacteria; Genetics; Signal transduction","score_opus":0.003965547926865341,"score_gpt":0.2022690305517661,"score_spread":0.19830348262490075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102484955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939674,0.0029437866,0.0003066799,0.00096000615,0.0015230394,0.000114736744,0.000019564415,0.000012330757,0.00015241576],"genre_scores_gemma":[0.9983202,0.0005846372,0.00006736855,0.0002616162,0.000037891874,4.7980336e-7,0.000039857543,0.000017095505,0.0006708566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981553,0.00059276505,0.00080534857,0.00009339058,0.000059442125,0.00029375398],"domain_scores_gemma":[0.997851,0.0006769153,0.0008709364,0.00030995256,0.0002759237,0.000015278669],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008449766,0.0001689018,0.00039412288,0.00015601025,0.00013950092,0.000010080536,0.00034848895,0.0003842919,0.00046217692],"category_scores_gemma":[0.00020554256,0.0001198778,0.00012687537,0.0001274433,0.0004091149,0.00018670593,0.000057329944,0.00077601057,0.00014969989],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080261444,0.000067305766,0.000049788592,0.000005833072,0.00024882186,0.0000022664017,0.00070520706,7.7844794e-7,0.98237044,0.000012306834,0.011183702,0.004550942],"study_design_scores_gemma":[0.0014466144,0.0004119138,0.00058150344,0.000026619828,0.00011265624,0.00062967086,0.00021776767,0.000010001368,0.9563597,0.00007115801,0.04001976,0.00011262741],"about_ca_topic_score_codex":0.000051860818,"about_ca_topic_score_gemma":0.000006780715,"teacher_disagreement_score":0.028836058,"about_ca_system_score_codex":0.000024780602,"about_ca_system_score_gemma":0.00008511863,"threshold_uncertainty_score":0.5060513},"labels":[],"label_agreement":null},{"id":"W2102867860","doi":"10.1371/journal.pone.0033299","title":"Both TLR2 and TRIF Contribute to Interferon-β Production during Listeria Infection","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Irish Research Council for Science, Engineering and Technology; Irish Research Council; Institut National de la Recherche Agronomique; Institut National de la Santé et de la Recherche Médicale; Science Foundation Ireland; Howard Hughes Medical Institute","keywords":"TRIF; IRF3; TLR2; Biology; Listeria monocytogenes; Innate immune system; Microbiology; Peptidoglycan; Interferon; Immune system; Toll-like receptor; Immunology; Gene; Bacteria; Biochemistry; Genetics","score_opus":0.025723592081026175,"score_gpt":0.22393686979857233,"score_spread":0.19821327771754615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2102867860","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99780405,0.0008106448,0.00004872906,0.00039832393,0.00040668485,0.00031505118,0.0000024790068,0.000072656185,0.00014141412],"genre_scores_gemma":[0.99642366,0.00013115723,0.000039355637,0.000036637277,0.00014478629,0.000040193638,0.000032672797,0.000009391532,0.0031421536],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993373,0.00011893455,0.00016822359,0.00012633471,0.00002320324,0.00022600061],"domain_scores_gemma":[0.9997184,0.000021561651,0.00005868276,0.00013554686,0.00004537395,0.000020405043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024317559,0.00008810081,0.00015391089,0.000103268794,0.00013006575,0.000014130942,0.000031096508,0.000104646046,0.00011949724],"category_scores_gemma":[0.00018450066,0.00008443693,0.000019162177,0.000071295166,0.000028309263,0.0002803543,0.000046930192,0.00011519598,0.0004217706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006454187,0.00023749754,0.0070194076,0.000045689165,0.00013746452,1.3964552e-7,0.0006568665,2.5194842e-7,0.9902328,0.00004885969,0.00016425215,0.0008113429],"study_design_scores_gemma":[0.00044120385,0.0001315552,0.18853933,0.000083646046,0.00005098236,0.000016993166,0.000022743288,5.2802375e-7,0.80866474,0.0000044872922,0.0019572407,0.000086557004],"about_ca_topic_score_codex":0.000039503862,"about_ca_topic_score_gemma":0.000007733498,"teacher_disagreement_score":0.18156807,"about_ca_system_score_codex":0.000046057758,"about_ca_system_score_gemma":0.000007675347,"threshold_uncertainty_score":0.54211485},"labels":[],"label_agreement":null},{"id":"W2103472291","doi":"10.4141/cjas2012-034","title":"Characterization and functional significance of polymorphisms in porcine Toll-like receptor (TLR) 5 gene","year":2012,"lang":"en","type":"article","venue":"Canadian Journal of Animal Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"TLR5; Flagellin; Biology; Single-nucleotide polymorphism; Gene; Genetics; Toll-like receptor; Molecular biology; Receptor; Innate immune system; Genotype","score_opus":0.01393708461369748,"score_gpt":0.20969865806825835,"score_spread":0.19576157345456088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103472291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977492,0.0010723027,0.00012017075,0.00036664298,0.0005577415,0.00005012445,0.0000066264056,0.0000011815657,0.00007599068],"genre_scores_gemma":[0.9996677,0.000031723106,0.000060052214,0.000056809844,0.000058652924,7.17431e-7,0.0000068897925,0.000002748519,0.00011468607],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993277,0.00004972735,0.00026486177,0.00006944457,0.000045639867,0.00024259227],"domain_scores_gemma":[0.9995213,0.00002247077,0.00019607095,0.000053549364,0.00011846351,0.00008813937],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007165916,0.00005613799,0.00012043803,0.00033806445,0.00010438898,0.000010728179,0.00010440875,0.00005369709,0.0002949287],"category_scores_gemma":[0.00010015722,0.0000496052,0.000020034606,0.0002768561,0.0003472857,0.00054286694,0.000009129899,0.00010387936,0.000011545644],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013676703,0.0000070909314,0.022338904,0.0000018393204,0.000004453253,0.000001682712,0.00036567726,8.8038666e-7,0.97484547,0.00038663324,0.000055005345,0.001855575],"study_design_scores_gemma":[0.00019042677,0.00014507283,0.5973062,0.000016531474,0.0000033764463,0.00012420013,0.00005703457,0.0000019321126,0.39728564,0.0000033173226,0.0048261276,0.00004016685],"about_ca_topic_score_codex":0.00047685712,"about_ca_topic_score_gemma":0.00014482893,"teacher_disagreement_score":0.5775599,"about_ca_system_score_codex":0.00008344026,"about_ca_system_score_gemma":0.0007373532,"threshold_uncertainty_score":0.32292625},"labels":[],"label_agreement":null},{"id":"W2103727417","doi":"10.1158/1078-0432.ccr-03-0569","title":"Changes in Gene Expression Induced by Phosphorothioate Oligodeoxynucleotides (Including G3139) in PC3 Prostate Carcinoma Cells Are Recapitulated at Least in Part by Treatment with Interferon-β and -γ","year":2004,"lang":"en","type":"article","venue":"Clinical Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Immunovaccine (Canada)","funders":"","keywords":"Prostate; Gene expression; Carcinoma; Gene; Interferon; Biology; Cancer research; Medicine; Cancer; Internal medicine; Immunology; Genetics","score_opus":0.11748575378069331,"score_gpt":0.3874279057922098,"score_spread":0.2699421520115165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2103727417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9901124,0.007258305,5.7646537e-7,0.0015369119,0.00012504999,0.0008882966,0.000029529214,0.000016946991,0.000031958254],"genre_scores_gemma":[0.9900182,0.008729069,0.000009050845,0.00005793603,0.00001966101,0.00037011818,0.000077951874,0.00002802273,0.00069001626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970431,0.0009736561,0.0006102265,0.00059745664,0.00010105584,0.0006745257],"domain_scores_gemma":[0.99913216,0.0003254136,0.00014214842,0.00027090337,0.00007424315,0.000055141718],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014427956,0.00022041006,0.0004917097,0.00025914048,0.00014025123,0.000027261136,0.0001705021,0.00036388641,0.00008348646],"category_scores_gemma":[0.00008463654,0.00017108036,0.00003389209,0.0003495081,0.0003226525,0.00012745943,0.00021374231,0.0007875854,0.000044305634],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007241677,0.00061744597,0.073231876,0.000033534612,0.00002797839,0.000045145007,0.0018594725,0.000015648522,0.9100069,0.0000015377175,0.00041764393,0.006501151],"study_design_scores_gemma":[0.011315088,0.0017641139,0.025273867,0.0006601594,0.0000053322556,0.0000045722713,0.0005073402,0.000008302324,0.95811045,0.000016309354,0.0021387024,0.00019578151],"about_ca_topic_score_codex":0.004553719,"about_ca_topic_score_gemma":0.009585469,"teacher_disagreement_score":0.048103545,"about_ca_system_score_codex":0.0008223992,"about_ca_system_score_gemma":0.00017763945,"threshold_uncertainty_score":0.6976455},"labels":[],"label_agreement":null},{"id":"W2104442443","doi":"10.4049/jimmunol.181.5.3620","title":"Nucleotide Oligomerization Domains 1 and 2: Regulation of Expression and Function in Preadipocytes","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Deutsche Forschungsgemeinschaft","keywords":"Muramyl dipeptide; Nucleotide; Biology; Cyclic nucleotide-binding domain; Cell biology; NOD2; Small interfering RNA; Transfection; Biochemistry; Chemistry; Molecular biology; Receptor; Innate immune system; Gene; In vitro","score_opus":0.007936151554731603,"score_gpt":0.20465361031560236,"score_spread":0.19671745876087077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104442443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99026966,0.008572988,0.00066913076,0.00016020918,0.00016906072,0.00008030838,4.888772e-7,0.000004378877,0.0000737617],"genre_scores_gemma":[0.9961207,0.0036756846,0.000053385993,0.000014889334,0.000011687204,9.5207974e-7,0.0000041705594,0.000005261814,0.000113273774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990024,0.00042043263,0.00040093315,0.000052262563,0.00002640483,0.0000975527],"domain_scores_gemma":[0.99920166,0.00021482463,0.00040243546,0.000099829886,0.00007619446,0.000005042152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045010162,0.00007115817,0.00019397735,0.00019920079,0.00010189775,0.0000020247812,0.000068174755,0.00012120262,0.000036264315],"category_scores_gemma":[0.00009218812,0.00004822806,0.000022573178,0.000091994225,0.0002929895,0.00019723279,0.00003529547,0.00017093135,0.0000035556861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001697617,0.00002597469,0.0025097323,0.000006515046,0.000052507963,8.82818e-7,0.0013008836,0.000027588998,0.9908128,0.0003224625,0.000040049857,0.0032030188],"study_design_scores_gemma":[0.0012798656,0.000409632,0.45834476,0.000058339407,0.0000292799,0.0006952962,0.0003320535,0.000008528294,0.5377748,0.00039964748,0.0006251046,0.0000426925],"about_ca_topic_score_codex":0.000023295477,"about_ca_topic_score_gemma":0.0000030140682,"teacher_disagreement_score":0.45583504,"about_ca_system_score_codex":0.000013917465,"about_ca_system_score_gemma":0.000032960368,"threshold_uncertainty_score":0.19666833},"labels":[],"label_agreement":null},{"id":"W2104868556","doi":"10.1177/1091581809347388","title":"Safety Evaluation of Calcium Administered Intranasally to Mice","year":2009,"lang":"en","type":"article","venue":"International Journal of Toxicology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"","keywords":"Nasal administration; Calcium; Histopathology; Toxicity; Medicine; Pharmacology; Immune system; Inflammation; Immunology; Physiology; Internal medicine; Pathology","score_opus":0.0328068797575845,"score_gpt":0.3468024012200365,"score_spread":0.313995521462452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104868556","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9835012,0.0005303722,0.0020999266,0.009062948,0.0025327466,0.00016195512,0.000009822091,0.00000673057,0.0020943012],"genre_scores_gemma":[0.9984731,0.000028688159,0.00031243797,0.0007660161,0.000113278984,0.0000016596784,0.000014886424,0.0000044378385,0.00028546987],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99846596,0.00038068224,0.00074994215,0.00009403481,0.00017340062,0.000135971],"domain_scores_gemma":[0.9978405,0.00014517424,0.0005017267,0.00009812132,0.001391618,0.000022833467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00137182,0.000089840985,0.00024373065,0.00035881903,0.000028693212,0.00000902952,0.00040865876,0.00015631439,0.00067688763],"category_scores_gemma":[0.0006725354,0.00008050737,0.00011589144,0.000075023316,0.00004806686,0.00014963541,0.000029577439,0.0001757975,0.000074365715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029066002,0.00016526088,0.00009794225,0.0000014290008,0.00025722594,0.000009488047,0.00039248107,0.0003213467,0.92812145,0.0009559637,0.0016572064,0.065113604],"study_design_scores_gemma":[0.004307824,0.0023417536,0.05688843,0.000074239164,0.0001422221,0.00082616217,0.00017412631,0.00005879508,0.904073,0.0010697731,0.029902682,0.00014100586],"about_ca_topic_score_codex":0.000004798885,"about_ca_topic_score_gemma":0.0000078198245,"teacher_disagreement_score":0.0649726,"about_ca_system_score_codex":0.00015740142,"about_ca_system_score_gemma":0.0002920476,"threshold_uncertainty_score":0.74114454},"labels":[],"label_agreement":null},{"id":"W2104876332","doi":"10.1093/molbev/msr137","title":"Evolution of the TIR Domain-Containing Adaptors in Humans: Swinging between Constraint and Adaptation","year":2011,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Agence Nationale de la Recherche","keywords":"Biology; TRIF; Signal transducing adaptor protein; Innate immune system; Receptor; Toll-like receptor; Population; Genetics; Cell biology","score_opus":0.014396305466745248,"score_gpt":0.22603660004035797,"score_spread":0.21164029457361272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104876332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97667915,0.0031610876,0.019481521,0.00005214564,0.00013017187,0.00018035831,0.0000032278608,0.000014724362,0.00029764295],"genre_scores_gemma":[0.9995981,0.000020587493,0.00031309295,0.0000126926325,0.000008262631,0.000009958339,0.000020794945,0.000005181396,0.000011339323],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989417,0.0003829335,0.00029599492,0.0001786521,0.00001729747,0.00018340124],"domain_scores_gemma":[0.9996401,0.000048553084,0.0001479621,0.00012001463,0.000034525183,0.000008824687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048492575,0.00010003909,0.00016706016,0.00014387649,0.00013995696,0.0000024767423,0.00006812695,0.00025014835,0.0000106995685],"category_scores_gemma":[0.00007750167,0.0000839272,0.000038639708,0.000109476154,0.00037464208,0.00007080157,0.000055410397,0.00016639722,0.0000036574293],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001744054,0.000017338905,0.255774,0.000013727499,0.000056712055,8.7397615e-7,0.0023261276,0.000007169061,0.6719635,0.065417916,0.0000020719856,0.004246179],"study_design_scores_gemma":[0.0010482359,0.00026786994,0.9210445,0.000089524096,0.000043369197,0.000019513096,0.0023634587,0.00006332468,0.056905124,0.017889312,0.00011735279,0.00014837742],"about_ca_topic_score_codex":0.00036785397,"about_ca_topic_score_gemma":0.00005224298,"teacher_disagreement_score":0.66527057,"about_ca_system_score_codex":0.000059738853,"about_ca_system_score_gemma":0.00004867329,"threshold_uncertainty_score":0.3422452},"labels":[],"label_agreement":null},{"id":"W2104957057","doi":"10.4049/jimmunol.171.11.6065","title":"IL-1R-Associated Kinase 4 Is Required for Lipopolysaccharide- Induced Activation of APC","year":2003,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Cell biology; Lipopolysaccharide; Signal transduction; Immune system; Innate immune system; Cytokine; Biology; Kinase; Stimulation; Immunology; Endocrinology","score_opus":0.022204971120799447,"score_gpt":0.2582160907812853,"score_spread":0.23601111966048588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2104957057","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951633,0.0019722336,0.00068776275,0.00091974984,0.0008537932,0.00023719567,0.0000068520712,0.000011194716,0.00014791201],"genre_scores_gemma":[0.9988992,0.00036711243,0.00005052085,0.00015262818,0.000022262298,0.0000060024777,0.000010577017,0.000015974227,0.00047568817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99789953,0.0008726531,0.00080794777,0.0000873138,0.000051064653,0.000281482],"domain_scores_gemma":[0.99723613,0.00070482894,0.0012847559,0.000273332,0.00049108214,0.000009885954],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016955074,0.0001486474,0.00042002875,0.00023367675,0.00018350272,0.0000060240527,0.00032214154,0.00035544203,0.00019700141],"category_scores_gemma":[0.0015659712,0.00010486203,0.00018363264,0.00015679255,0.00016789389,0.00020742275,0.00003071202,0.00038526606,0.000031112304],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001949493,0.00012276591,0.000042465486,0.000007378025,0.00067451334,6.023923e-7,0.0013691112,0.0000036593997,0.98867816,0.0018637672,0.0009464893,0.0043416126],"study_design_scores_gemma":[0.0025670677,0.0011999477,0.0011389608,0.000058434936,0.00013174687,0.00012736043,0.0009044475,0.0000023654186,0.98561573,0.0013829222,0.0067694564,0.00010153404],"about_ca_topic_score_codex":0.000045595578,"about_ca_topic_score_gemma":0.0000024535173,"teacher_disagreement_score":0.0058229673,"about_ca_system_score_codex":0.00008135673,"about_ca_system_score_gemma":0.00020658104,"threshold_uncertainty_score":0.42761496},"labels":[],"label_agreement":null},{"id":"W2105506714","doi":"10.4049/jimmunol.1203310","title":"A TNF-α–CCL20–CCR6 Axis Regulates Nod1-Induced B Cell Responses","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; McGill University","funders":"Canadian Institutes of Health Research; University of Toronto","keywords":"NOD1; Lymphotoxin; Inflammation; CCL20; Chemokine; Innate immune system; Cell biology; C-C chemokine receptor type 6; Immunology; CCL21; Tumor necrosis factor alpha; Spleen; Immune system; Biology; CXCL13; Chemokine receptor; NOD2","score_opus":0.010356656002044516,"score_gpt":0.2254298652657285,"score_spread":0.21507320926368398,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105506714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872451,0.0074000363,0.00025394637,0.0022769552,0.0014046772,0.00012678595,0.0000015950518,0.000031209172,0.0012597211],"genre_scores_gemma":[0.9947841,0.0006696606,0.000064673506,0.0002365757,0.0001005483,0.0000028885813,0.0000057672014,0.0000236547,0.004112086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960976,0.0024600162,0.00081601203,0.00012855549,0.000066752,0.00043104347],"domain_scores_gemma":[0.9969597,0.0013619442,0.0008204678,0.00055045664,0.0002889698,0.000018446506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025401397,0.00022521736,0.00048588205,0.00031664266,0.00032427677,0.000018035913,0.00072983024,0.0003633066,0.0004066096],"category_scores_gemma":[0.00070652337,0.00014394491,0.00020074277,0.00018810784,0.0003344287,0.00019594458,0.00013030463,0.00077331346,0.0007467442],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0040192166,0.00007585245,0.00006651287,0.000007031652,0.00026207042,0.000005062638,0.0011791311,0.000007785442,0.9799216,0.00039408266,0.0019757005,0.012085958],"study_design_scores_gemma":[0.0020577384,0.0015730856,0.010284813,0.000045891444,0.00011998616,0.0015823827,0.0006268215,0.000004471456,0.91714495,0.0006391313,0.065750554,0.00017019083],"about_ca_topic_score_codex":0.000047528534,"about_ca_topic_score_gemma":0.000004489638,"teacher_disagreement_score":0.063774854,"about_ca_system_score_codex":0.000056430777,"about_ca_system_score_gemma":0.00014442213,"threshold_uncertainty_score":0.95981354},"labels":[],"label_agreement":null},{"id":"W2105542546","doi":"10.3748/wjg.v20.i47.17699","title":"Toll-like receptor signaling in colorectal cancer: Carcinogenesis to cancer therapy","year":2014,"lang":"en","type":"review","venue":"World Journal of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; National Institutes of Health; Gary Bennett Family Fund","keywords":"TLR3; Toll-like receptor; Innate immune system; Biology; Signal transduction; Inflammation; Cancer research; Immune system; Carcinogenesis; TLR4; Cancer; Cell biology; Immunology; Pattern recognition receptor; TLR5","score_opus":0.023330505545657045,"score_gpt":0.30545807088168847,"score_spread":0.28212756533603145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105542546","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08480987,0.91077983,0.00002758145,0.00045118065,0.003416019,0.00045927486,0.00002668163,0.00001131364,0.000018273173],"genre_scores_gemma":[0.006196994,0.9921776,0.000053634256,0.00045809688,0.0003725121,0.0001483139,0.000035503257,0.000058331378,0.000499007],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99545485,0.001775625,0.0016815676,0.00032917503,0.00007967832,0.0006790865],"domain_scores_gemma":[0.9978819,0.00026110743,0.0014144868,0.00020108036,0.00017865501,0.00006280166],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009868649,0.00048091752,0.002750234,0.0014691995,0.00008561405,0.000018261539,0.00062488165,0.0003759723,0.0010530697],"category_scores_gemma":[0.000044944667,0.0003778588,0.0006510778,0.00035954025,0.00010680786,0.00008494337,0.000092397255,0.0009657476,0.00011390361],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0073863235,0.00016198473,0.0047477395,0.0008803336,0.0017394918,0.00004822133,0.0003706197,0.0001061406,0.026697537,0.0000109791135,0.010854038,0.94699657],"study_design_scores_gemma":[0.0015702518,0.0012793409,0.00039235444,0.004348119,0.0002754719,0.0003431725,0.000017961427,2.4088507e-7,0.001595233,0.0000022050863,0.9899717,0.00020397561],"about_ca_topic_score_codex":0.00013624306,"about_ca_topic_score_gemma":0.001045032,"teacher_disagreement_score":0.97911763,"about_ca_system_score_codex":0.00041840196,"about_ca_system_score_gemma":0.0003935426,"threshold_uncertainty_score":0.9998673},"labels":[],"label_agreement":null},{"id":"W2105582142","doi":"10.4049/jimmunol.169.6.3370","title":"Endotoxemia Prevents the Cerebral Inflammatory Wave Induced by Intraparenchymal Lipopolysaccharide Injection: Role of Glucocorticoids and CD14","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval","funders":"Canadian Institutes of Health Research; University of Illinois at Urbana-Champaign","keywords":"CD14; Lipopolysaccharide; Neuroinflammation; Inflammation; Innate immune system; Microglia; Endocrinology; Immune system; Monocyte; Internal medicine; Systemic administration; Systemic inflammation; Receptor; Tumor necrosis factor alpha; Medicine; Immunology; Biology","score_opus":0.009109168438404331,"score_gpt":0.19994499572454197,"score_spread":0.19083582728613763,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105582142","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97671914,0.02172945,0.000026003574,0.0005414694,0.0005728298,0.00019442623,0.0000023476048,0.0000111673935,0.0002031799],"genre_scores_gemma":[0.9979978,0.001461723,0.000007986323,0.00006841757,0.00006140989,0.00000638856,0.0000027948583,0.000012638167,0.00038081655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99787563,0.00086090097,0.0008094974,0.00009834919,0.00006984203,0.0002857779],"domain_scores_gemma":[0.998358,0.00033045493,0.0008435865,0.00031228154,0.0001401386,0.000015523541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007904003,0.00017500849,0.00034859107,0.00014466405,0.00024442415,0.000011841197,0.00038214115,0.00026323381,0.00041907525],"category_scores_gemma":[0.00019254627,0.00010255727,0.00010592796,0.00010953215,0.00047847274,0.00021105401,0.00012821352,0.0007732089,0.000034675297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006223759,0.00006556843,0.00055871415,0.000005907708,0.00049786305,0.0000016900974,0.003126113,0.0000028334912,0.97289085,0.0003518825,0.00052802585,0.021348162],"study_design_scores_gemma":[0.0016503624,0.001140138,0.00852205,0.000045127417,0.00015199056,0.0024122167,0.0021019976,0.000021635107,0.97853315,0.0004232235,0.0048706867,0.00012745122],"about_ca_topic_score_codex":0.00007898964,"about_ca_topic_score_gemma":0.0000055415094,"teacher_disagreement_score":0.0212787,"about_ca_system_score_codex":0.000042131123,"about_ca_system_score_gemma":0.000054944463,"threshold_uncertainty_score":0.45885798},"labels":[],"label_agreement":null},{"id":"W2105620133","doi":"10.4049/jimmunol.172.1.45","title":"Essential Role for Neutrophil Recruitment to the Liver in Concanavalin A-Induced Hepatitis","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":186,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Health Canada; Canadian Association of Gastroenterology","keywords":"Liver injury; Lymphocyte; Intravital microscopy; Hepatitis; Hepatocyte; Concanavalin A; Immunology; Inflammation; Liver disease; Infiltration (HVAC); Flow cytometry; Alanine transaminase; Medicine; Biology; Internal medicine; In vitro; Biochemistry; Microcirculation","score_opus":0.023272091002081774,"score_gpt":0.26629215089686903,"score_spread":0.24302005989478725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105620133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98042125,0.0073420964,0.00053058116,0.009889069,0.0011330512,0.00062367396,0.0000034409336,0.0000066640287,0.000050198265],"genre_scores_gemma":[0.9977803,0.0013734617,0.00006806308,0.00046350283,0.000093268936,0.000037831607,0.000005635612,0.000011752577,0.00016615892],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985155,0.00054158986,0.000529214,0.00008306085,0.000038360067,0.00029231256],"domain_scores_gemma":[0.99898154,0.00029914806,0.00031195537,0.00024533874,0.00015150974,0.000010533154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010653663,0.00012261553,0.00026716656,0.0001544359,0.00018512878,0.000010069353,0.00047179722,0.00015450933,0.0000809753],"category_scores_gemma":[0.00016821994,0.000070155904,0.000113434515,0.0001344494,0.000107612635,0.00008658754,0.00007414048,0.00038934275,0.00014327768],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025124017,0.00007966911,0.000037386653,0.000003027878,0.00026565438,0.000009268496,0.0036782592,0.00033498084,0.9758897,0.0017512486,0.00047383577,0.014964594],"study_design_scores_gemma":[0.0049824873,0.0024339478,0.018387029,0.00007981738,0.00012477467,0.0009812274,0.0014648255,0.0000058843375,0.89506483,0.0013804481,0.0749273,0.00016742304],"about_ca_topic_score_codex":0.0008334087,"about_ca_topic_score_gemma":0.00045028728,"teacher_disagreement_score":0.08082484,"about_ca_system_score_codex":0.00014333591,"about_ca_system_score_gemma":0.00018927515,"threshold_uncertainty_score":0.28608748},"labels":[],"label_agreement":null},{"id":"W2105664859","doi":"10.4049/jimmunol.1001034","title":"MyD88-Dependent SHIP1 Regulates Proinflammatory Signaling Pathways in Dendritic Cells after Monophosphoryl Lipid A Stimulation of TLR4","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; American Heart Association; W. M. Keck Foundation","keywords":"TRIF; Proinflammatory cytokine; TLR4; Signal transduction; Cell biology; Signal transducing adaptor protein; Lipid A; Toll-like receptor; Biology; Chemistry; Immunology; Inflammation; Lipopolysaccharide; Immune system; Innate immune system","score_opus":0.014313548371212934,"score_gpt":0.20153175537105827,"score_spread":0.18721820699984534,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105664859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885107,0.010189649,0.00015123616,0.000051451963,0.0007317067,0.00023620344,0.0000021137062,0.000012124938,0.00011479029],"genre_scores_gemma":[0.9991288,0.0004984831,0.00013058336,0.000023656827,0.000030872805,0.00000829838,0.0000030064625,0.000019763793,0.00015650498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99743456,0.00090370956,0.0011417886,0.00011775735,0.00007085973,0.00033132988],"domain_scores_gemma":[0.99826574,0.00033866547,0.0008305674,0.00032271937,0.00022861695,0.000013710353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015963452,0.00019085834,0.00045591436,0.00036064035,0.00007647039,0.0000058428104,0.000408177,0.00030565952,0.0004427422],"category_scores_gemma":[0.000120639685,0.00013819145,0.00014036417,0.00014745975,0.00027913233,0.00024002892,0.000092214694,0.0005804728,0.00009661901],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005299915,0.00014129285,0.0014732484,0.00002410155,0.00023040053,0.000028193728,0.0071557136,0.00014489729,0.9832598,0.0001793879,0.0000209034,0.0020421569],"study_design_scores_gemma":[0.0015853706,0.0006690953,0.04657871,0.00017470056,0.000092889335,0.0003301912,0.0013022255,0.000014817465,0.9481714,0.00081983267,0.00012554546,0.000135268],"about_ca_topic_score_codex":0.00007704844,"about_ca_topic_score_gemma":0.000014430637,"teacher_disagreement_score":0.04510546,"about_ca_system_score_codex":0.000080613,"about_ca_system_score_gemma":0.00015296646,"threshold_uncertainty_score":0.5635284},"labels":[],"label_agreement":null},{"id":"W2105910778","doi":"10.1164/rccm.200906-0925oc","title":"Activating Transcription Factor 3 Confers Protection against Ventilator-induced Lung Injury","year":2010,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; St. Michael's Hospital","funders":"National Cancer Institute; National Institutes of Health","keywords":"ATF3; Proinflammatory cytokine; Activating transcription factor; Medicine; Bronchoalveolar lavage; Lung; Inflammation; Transcription factor; Pulmonary edema; Mechanical ventilation; In vivo; Immunology; Respiratory distress; Gene expression; Biology; Gene; Anesthesia; Promoter; Internal medicine; Genetics","score_opus":0.01750419232745371,"score_gpt":0.29346320766505163,"score_spread":0.2759590153375979,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2105910778","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640155,0.0011054993,0.0004924918,0.0007121416,0.001012453,0.00011764925,0.0000027860847,0.000017539654,0.00013790508],"genre_scores_gemma":[0.9993188,0.000022469641,0.00002371866,0.00039879672,0.00020956877,0.000005053067,0.0000030535637,0.000011768978,0.000006807525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998821,0.0002920516,0.0004609911,0.00013414508,0.00009130323,0.00020046889],"domain_scores_gemma":[0.99906003,0.0001532795,0.00023690544,0.0001141386,0.00037083603,0.000064814674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041340373,0.0001402879,0.0003440283,0.00019872328,0.00018496878,0.000012777955,0.00009026481,0.00012834526,0.00012772265],"category_scores_gemma":[0.0007878185,0.00010770234,0.00007511582,0.00013587766,0.00064152415,0.000231917,0.00001129275,0.0008594103,0.0000040448504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004708625,0.000013477513,0.00050219405,0.000031731768,0.0000306783,0.0000064002074,0.0010370272,7.417096e-8,0.75440884,0.00014689661,0.000025999183,0.24332584],"study_design_scores_gemma":[0.0017088819,0.00641621,0.01336143,0.00030855858,0.00011065925,0.00016323337,0.011341092,0.0000051993534,0.94344133,0.00003378494,0.022866286,0.0002433601],"about_ca_topic_score_codex":0.000013883578,"about_ca_topic_score_gemma":0.0000023127511,"teacher_disagreement_score":0.2430825,"about_ca_system_score_codex":0.000033187924,"about_ca_system_score_gemma":0.00010114529,"threshold_uncertainty_score":0.4391974},"labels":[],"label_agreement":null},{"id":"W2106229108","doi":"10.1002/eji.201444874","title":"Heterodimer‐specific TLR2 stimulation results in divergent functional outcomes in B‐cell precursor acute lymphoblastic leukemia","year":2015,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research; European Hematology Association","keywords":"TLR2; Biology; Downregulation and upregulation; Stimulation; Cell biology; Cancer research; Signal transduction; Immunology; Biochemistry; Neuroscience","score_opus":0.024104405876133807,"score_gpt":0.22950533584661226,"score_spread":0.20540092997047846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106229108","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911247,0.0039192326,0.00045288503,0.00029001918,0.0025119781,0.00014111231,0.00000694346,0.00001713143,0.0015360366],"genre_scores_gemma":[0.99772376,0.0003453215,0.00011336356,0.00004591309,0.00004922392,0.0000019097206,0.00006121935,0.000023286371,0.0016359793],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99617445,0.0018885091,0.0012809332,0.00021688773,0.00008744861,0.00035178987],"domain_scores_gemma":[0.9986215,0.00023992125,0.00065495976,0.00024896231,0.00020426219,0.000030351328],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017154216,0.00021553313,0.00044058854,0.00066833233,0.000058245496,0.000017256867,0.00031276347,0.0001322588,0.0001065063],"category_scores_gemma":[0.00032215167,0.00018315115,0.00012647282,0.00021540603,0.00013428558,0.0002897684,0.00011817339,0.00055436936,0.001038309],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03219491,0.00080186833,0.020525709,0.000013561117,0.0007235983,0.000959925,0.005726989,0.013698253,0.8969072,0.00016394594,0.010079588,0.018204454],"study_design_scores_gemma":[0.02924358,0.0023371999,0.8834898,0.00013699234,0.00006759728,0.00081269385,0.0005886432,0.000057229518,0.044686053,0.00008836598,0.03808301,0.0004088263],"about_ca_topic_score_codex":0.000015506632,"about_ca_topic_score_gemma":0.0000062820263,"teacher_disagreement_score":0.8629641,"about_ca_system_score_codex":0.0004489206,"about_ca_system_score_gemma":0.00022260047,"threshold_uncertainty_score":0.9997395},"labels":[],"label_agreement":null},{"id":"W2106332058","doi":"10.1073/pnas.0806585105","title":"Beyond tumor necrosis factor receptor: TRADD signaling in toll-like receptors","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":113,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre; Toronto Western Hospital; University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"TRADD; Tumor necrosis factor receptor 1; TRIF; Tumor necrosis factor alpha; Cell biology; Death domain; Signal transduction; Signal transducing adaptor protein; TLR4; Toll-like receptor; FADD; Biology; Cancer research; Immunology; Immune system; Innate immune system; Apoptosis; Caspase; Programmed cell death; Tumor necrosis factor receptor; Biochemistry","score_opus":0.03398639263196041,"score_gpt":0.26760430843389243,"score_spread":0.23361791580193203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106332058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963147,0.00038761573,1.8314434e-7,0.0010318853,0.00011982133,0.00015028493,0.0000069760354,0.000011912909,0.0019765943],"genre_scores_gemma":[0.99873054,0.00008145133,0.00022244081,0.00016427012,0.00002201784,0.000009554158,6.786107e-7,0.000003831965,0.00076520036],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989314,0.000023297793,0.0004309837,0.00019603927,0.00023012125,0.00018813941],"domain_scores_gemma":[0.99931484,0.00016288256,0.0003735369,0.000007963604,0.0001309762,0.000009773122],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082817057,0.00010055525,0.00018998959,0.00025667815,0.00026392168,0.000007638685,0.00053571165,0.00012929388,0.00017180067],"category_scores_gemma":[0.00037471697,0.0000709559,0.000085326705,0.0006007722,0.000898174,0.00045009123,0.00006788298,0.0002284902,0.000016800926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000655902,0.000036056095,0.0053522587,0.000014826819,0.000013824429,5.3110107e-9,0.0008312464,0.000011800832,0.9882367,0.002905999,0.0021868348,0.00034482055],"study_design_scores_gemma":[0.00030540413,0.00005753029,0.030098673,0.000064562686,0.0000039919405,0.000020076192,0.0002518976,0.000012227931,0.96452636,0.0022831776,0.0022893895,0.000086699016],"about_ca_topic_score_codex":0.00001109208,"about_ca_topic_score_gemma":7.349484e-8,"teacher_disagreement_score":0.024746414,"about_ca_system_score_codex":0.000046430465,"about_ca_system_score_gemma":0.00005612591,"threshold_uncertainty_score":0.33093596},"labels":[],"label_agreement":null},{"id":"W2106654764","doi":"10.4049/jimmunol.181.6.4229","title":"PIR-B-Deficient Mice Are Susceptible to <i>Salmonella</i> Infection","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Salmonella; Salmonella infection; Microbiology; Biology; Virology; Genetics; Bacteria","score_opus":0.01430591455734002,"score_gpt":0.22555683591830167,"score_spread":0.21125092136096166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106654764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98876446,0.006269921,0.0007169391,0.0020205104,0.0015061037,0.00013898828,0.0000012812528,0.000025042356,0.0005567414],"genre_scores_gemma":[0.9957317,0.0019447001,0.000035426016,0.0003722438,0.000066927605,0.000002957432,0.000003495873,0.0000145526565,0.0018279848],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982852,0.0006868958,0.00055678166,0.000095470896,0.00005583077,0.00031982822],"domain_scores_gemma":[0.99863213,0.00025519464,0.0005343565,0.00027328669,0.00028803578,0.000016970474],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00085858937,0.00015125042,0.00032005526,0.00027469962,0.00038108637,0.0000064357923,0.00033278408,0.00019379544,0.0002225484],"category_scores_gemma":[0.00023026312,0.00010169547,0.00013125941,0.00026904876,0.00023156968,0.00013203354,0.00009288687,0.0005314864,0.001232101],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014500039,0.00009973705,0.0010244077,0.000003869028,0.00019508626,0.000014144008,0.0016309078,0.00021800795,0.9831881,0.00007533314,0.010593687,0.0015067387],"study_design_scores_gemma":[0.0014761683,0.0018440038,0.06350238,0.000056974197,0.000087089466,0.0088780755,0.0007022655,0.0000016584869,0.7972008,0.00006710853,0.12599516,0.00018830432],"about_ca_topic_score_codex":0.00011871074,"about_ca_topic_score_gemma":0.00001426532,"teacher_disagreement_score":0.18598726,"about_ca_system_score_codex":0.00008084071,"about_ca_system_score_gemma":0.000095196556,"threshold_uncertainty_score":0.9995456},"labels":[],"label_agreement":null},{"id":"W2106910438","doi":"10.4049/jimmunol.1003706","title":"Pre-B Cell Colony-Enhancing Factor (PBEF/Nampt/Visfatin) Primes Neutrophils for Augmented Respiratory Burst Activity through Partial Assembly of the NADPH Oxidase","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Respiratory burst; NADPH oxidase; Nicotinamide mononucleotide; Proinflammatory cytokine; NAD+ kinase; Priming (agriculture); Phosphorylation; Cell biology; Kinase; Granulocyte; Reactive oxygen species; Chemistry; Biology; Biochemistry; Inflammation; Immunology; Enzyme; Nicotinamide adenine dinucleotide","score_opus":0.027797043426251052,"score_gpt":0.25829500170659425,"score_spread":0.2304979582803432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106910438","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99213415,0.0037523657,0.0015396505,0.00031235875,0.0014488822,0.0005822576,0.000017406463,0.000017876753,0.0001950399],"genre_scores_gemma":[0.9990453,0.00019384082,0.00007972707,0.00012265141,0.00006685739,0.00001657547,0.0000027833617,0.000025080819,0.00044714226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99677795,0.0016219793,0.00091357867,0.0001533689,0.00008281115,0.0004502852],"domain_scores_gemma":[0.99659485,0.00076022564,0.0017153,0.0005495403,0.00036418188,0.000015914276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011264537,0.00025034838,0.0005524926,0.000110089604,0.00039797483,0.0000095967,0.00078556524,0.00035443855,0.00015142356],"category_scores_gemma":[0.0003845241,0.00014813767,0.00032035506,0.00015807063,0.00052394473,0.00034220485,0.00017030779,0.00071237393,0.000022846123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007531463,0.00025083305,0.00026474227,0.000029127043,0.0005072249,0.0000017828705,0.0041301656,0.000008592811,0.98553723,0.00018122717,0.00036371374,0.001193905],"study_design_scores_gemma":[0.0023588522,0.0018306747,0.040866442,0.00007629465,0.00019876705,0.00010071829,0.0004930676,0.0000026203943,0.94842774,0.00011945183,0.005384762,0.00014061067],"about_ca_topic_score_codex":0.00014624669,"about_ca_topic_score_gemma":0.000022473288,"teacher_disagreement_score":0.040601697,"about_ca_system_score_codex":0.0000980798,"about_ca_system_score_gemma":0.00038582255,"threshold_uncertainty_score":0.6040878},"labels":[],"label_agreement":null},{"id":"W2106926219","doi":"10.1093/annonc/mdi226","title":"Feasibility of high-dose interleukin-2 in heavily pretreated pediatric cancer patients","year":2005,"lang":"en","type":"article","venue":"Annals of Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pediatric Oncology Group","funders":"","keywords":"Medicine; Gastroenterology; Internal medicine; Creatinine; Albumin; Refractory (planetary science); Alkaline phosphatase; Oncology; Surgery","score_opus":0.04433238645170595,"score_gpt":0.35053545970824257,"score_spread":0.3062030732565366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2106926219","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99597144,0.0017675502,0.0000019112745,0.0009182225,0.00028870418,0.00027026053,0.000027392698,0.00001274867,0.00074174587],"genre_scores_gemma":[0.99861616,0.0008030476,0.000023736926,0.00017594898,0.000023308748,0.000021517524,0.00006250111,0.000007429001,0.00026632476],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99850416,0.00038710222,0.0006427082,0.00018368778,0.000032830874,0.00024953275],"domain_scores_gemma":[0.9990026,0.00017441915,0.00035527247,0.00019954598,0.00025522508,0.0000129719465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003816117,0.000115496725,0.00042390497,0.00025057077,0.000022933182,0.0000012344918,0.00016251905,0.00029386434,0.000417032],"category_scores_gemma":[0.0001824647,0.00010482524,0.00007945627,0.00022074957,0.00012542083,0.000120154415,0.000060080816,0.00017704736,0.00006380705],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068189283,0.0033672971,0.71522266,0.000107368985,0.00017183616,0.0000034509158,0.002096241,0.00009381499,0.09460873,0.00034524,0.007789595,0.16937482],"study_design_scores_gemma":[0.0036835035,0.0018421602,0.7539766,0.000026909647,0.00002602081,0.000002296459,0.000040387844,0.0000033235399,0.22996907,0.00009782552,0.010219368,0.0001125657],"about_ca_topic_score_codex":0.0008359747,"about_ca_topic_score_gemma":0.00039125638,"teacher_disagreement_score":0.16926226,"about_ca_system_score_codex":0.00007374577,"about_ca_system_score_gemma":0.00018541266,"threshold_uncertainty_score":0.45662078},"labels":[],"label_agreement":null},{"id":"W2107152134","doi":"10.1016/j.ccm.2008.08.001","title":"The Immune System in Critical Illness","year":2008,"lang":"en","type":"review","venue":"Clinics in Chest Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Immune system; Sepsis; Innate immune system; Acquired immune system; Immunology; Medicine; Critical illness; Pattern recognition receptor; Neuroscience; Critically ill; Biology; Intensive care medicine","score_opus":0.07102966443724441,"score_gpt":0.40452742781610884,"score_spread":0.33349776337886444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107152134","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000048404265,0.9928041,0.0000074795294,0.00034733696,0.004582475,0.000603062,0.0000036976753,0.000040995696,0.0015624556],"genre_scores_gemma":[0.0009053011,0.99742633,0.0000042878205,0.000025429941,0.00022865557,0.00018005384,0.00017877469,0.000039993032,0.0010111819],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.995269,0.0013917605,0.0023671053,0.0003931461,0.00007431228,0.0005046656],"domain_scores_gemma":[0.99028885,0.008429977,0.00041815054,0.00076687895,0.00007564235,0.00002051299],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026800083,0.00039247313,0.0021802622,0.00032371574,0.0002269459,0.000007663948,0.00064006477,0.001133118,0.000051792533],"category_scores_gemma":[0.0044548437,0.00023090548,0.00025577465,0.00047657144,0.0010137141,0.000049940285,0.00013042786,0.0018358575,0.00066569156],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007799377,0.00005943067,0.000009266318,0.004852374,0.00007888496,0.00013645928,0.00039165965,1.3638325e-7,0.000006785389,0.00574529,0.0006394073,0.9880023],"study_design_scores_gemma":[0.0008705222,0.00011092264,0.000056647877,0.025923062,0.0001105218,0.0005607068,0.00048751076,0.0000020530276,0.000015662901,0.000036886835,0.97158825,0.0002372241],"about_ca_topic_score_codex":0.000053838525,"about_ca_topic_score_gemma":0.000018399702,"teacher_disagreement_score":0.9877651,"about_ca_system_score_codex":0.00026466112,"about_ca_system_score_gemma":0.00039974696,"threshold_uncertainty_score":0.9416052},"labels":[],"label_agreement":null},{"id":"W2107348873","doi":"10.1001/archinte.165.1.75","title":"The Association of Interleukin 6 Haplotype Clades With Mortality in Critically Ill Adults","year":2005,"lang":"en","type":"article","venue":"Archives of Internal Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":115,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Haplotype; Genotyping; Biology; Single-nucleotide polymorphism; Population; Genetics; Systemic inflammatory response syndrome; Sepsis; Genotype; Immunology; Medicine; Gene","score_opus":0.005544381214505817,"score_gpt":0.24981063505687912,"score_spread":0.2442662538423733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107348873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98915803,0.00085635856,0.00030265108,0.004050383,0.000117080366,0.00009967287,0.0000026931307,0.000007413307,0.0054057366],"genre_scores_gemma":[0.99861646,0.00021419449,0.000085486296,0.00021169859,0.000031970463,0.000004527556,0.000009095594,0.000004744588,0.00082183373],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991121,0.00018468783,0.0004269822,0.00008727987,0.00004825526,0.00014067526],"domain_scores_gemma":[0.9986329,0.00089252775,0.00020461771,0.00013548766,0.00012596612,0.000008464775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032722708,0.00007397146,0.0002045009,0.000090258494,0.000025075251,0.0000016373724,0.00017525424,0.00004631348,0.00005383431],"category_scores_gemma":[0.001105722,0.000041716747,0.00003506598,0.00004987852,0.00034845865,0.000053040876,0.00003242457,0.00018776681,0.000009978377],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009588134,0.0002032827,0.15315457,0.00007649789,0.00051879697,0.0000044638905,0.009002533,0.000010744232,0.6804113,0.006613423,0.0006775472,0.13973874],"study_design_scores_gemma":[0.0035122852,0.0015064469,0.69913125,0.0015207209,0.00004906651,0.000020804142,0.0014069738,0.000103011625,0.27827024,0.00070020626,0.013682107,0.00009688195],"about_ca_topic_score_codex":0.00036693105,"about_ca_topic_score_gemma":0.0006985953,"teacher_disagreement_score":0.5459767,"about_ca_system_score_codex":0.000021601856,"about_ca_system_score_gemma":0.000023113855,"threshold_uncertainty_score":0.17011595},"labels":[],"label_agreement":null},{"id":"W2107385964","doi":"10.1183/09031936.06.00010806","title":"Toll-like receptor mRNA levels in alveolar macrophages after inhalation of endotoxin","year":2006,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":62,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Bronchoalveolar lavage; TLR4; Lipopolysaccharide; CD14; Alveolar macrophage; Receptor; Immunology; Toll-like receptor; Innate immune system; In vivo; Inhalation; Immune system; Macrophage; Biology; Medicine; In vitro; Lung; Internal medicine; Anesthesia","score_opus":0.01167417613906864,"score_gpt":0.22332551543260856,"score_spread":0.2116513392935399,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107385964","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989633,0.005648229,0.00012331313,0.000049492908,0.00056774006,0.00012159905,0.000008983017,0.000021346961,0.0038262925],"genre_scores_gemma":[0.99785966,0.00003748269,0.00009062917,0.0001496017,0.00015183454,0.0000032718585,0.000010576322,0.000027967979,0.0016689727],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971236,0.001575658,0.0007824916,0.00016726696,0.00007172278,0.00027925853],"domain_scores_gemma":[0.9992554,0.00006572953,0.00035679183,0.00020364091,0.000099599114,0.000018821243],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014226919,0.00016183774,0.00022599894,0.00034671236,0.00011408427,0.00002998241,0.00019468208,0.00010258794,0.0012872965],"category_scores_gemma":[0.00007757568,0.00014584875,0.00011637715,0.00015166127,0.00010359571,0.00027388294,0.000054400276,0.0004673841,0.00076212257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038673266,0.000072379175,0.011663823,0.000010738012,0.00003152946,0.00012808872,0.00023587859,0.000039178503,0.9778706,0.000048648417,0.0029324926,0.0065799044],"study_design_scores_gemma":[0.0017100536,0.00017430197,0.37031046,0.000096994365,0.000012289138,0.00014954201,0.000060681446,9.460482e-7,0.48086333,0.00002857496,0.14643061,0.00016221199],"about_ca_topic_score_codex":0.000007873602,"about_ca_topic_score_gemma":0.0000061416595,"teacher_disagreement_score":0.49700728,"about_ca_system_score_codex":0.00006108408,"about_ca_system_score_gemma":0.00007003525,"threshold_uncertainty_score":0.9996257},"labels":[],"label_agreement":null},{"id":"W2107567132","doi":"10.14814/phy2.12225","title":"Pattern recognition receptors in the gut: analysis of their expression along the intestinal tract and the crypt/villus axis","year":2015,"lang":"en","type":"article","venue":"Physiological Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Institut National de la Recherche Agronomique; Agence Nationale de la Recherche","keywords":"Crypt; Ileum; Jejunum; Lamina propria; Biology; Small intestine; TLR3; Pathology; Immune system; Immunology; Toll-like receptor; Endocrinology; Medicine; Innate immune system; Epithelium; Genetics","score_opus":0.04205419729146097,"score_gpt":0.26204355194991974,"score_spread":0.21998935465845876,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107567132","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99757904,0.0009755904,0.00008909884,0.000612889,0.00015305127,0.00027325787,0.0000024355518,0.00001466988,0.00029997574],"genre_scores_gemma":[0.9994376,0.00013312043,0.000007739441,0.000186499,0.000023105902,0.000057149176,0.00012739374,0.0000037395844,0.000023665514],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9976425,0.0013984282,0.00051010016,0.00021416026,0.00006453005,0.00017028875],"domain_scores_gemma":[0.99807507,0.001083674,0.0003928961,0.00034903124,0.00008846665,0.000010890888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021118359,0.00013157482,0.00032418623,0.00007313807,0.00013141082,0.000015162063,0.00016725864,0.00012658015,0.00014364284],"category_scores_gemma":[0.0012509241,0.000046879733,0.00015248357,0.00031792515,0.0004422453,0.00007796618,0.00008353049,0.0003006338,0.000010058109],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030009632,0.00066680845,0.03444697,0.000026594407,0.0008320846,0.00008782206,0.020222312,0.00022300932,0.7256619,0.00012536095,0.003482268,0.21122396],"study_design_scores_gemma":[0.0013564404,0.00048829947,0.92497474,0.00011235734,0.0004293025,0.0003916546,0.0064653237,0.00022831748,0.05552222,0.0065972,0.0031712248,0.00026291257],"about_ca_topic_score_codex":0.0003245628,"about_ca_topic_score_gemma":0.00002516684,"teacher_disagreement_score":0.8905278,"about_ca_system_score_codex":0.000014678464,"about_ca_system_score_gemma":0.000023559985,"threshold_uncertainty_score":0.19117},"labels":[],"label_agreement":null},{"id":"W2107623090","doi":"10.1189/jlb.0206099","title":"TLR4 gene dosage contributes to endotoxin-induced acute respiratory inflammation","year":2006,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Studium Loire Valley-Institute for Advanced Studies; Canadian Institutes of Health Research; Centre National de la Recherche Scientifique","keywords":"TLR4; Chemokine; Biology; Inflammation; Immunology; Lipopolysaccharide; Lung; Tumor necrosis factor alpha; Bronchoalveolar lavage; Cytokine; Medicine; Internal medicine","score_opus":0.011831178517807189,"score_gpt":0.2590383182717944,"score_spread":0.24720713975398723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107623090","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924,0.0027128074,0.0017274204,0.0010339109,0.0014063828,0.00024314724,0.000009503632,0.000030608306,0.00043623897],"genre_scores_gemma":[0.9983932,0.00007279212,0.00018605577,0.0003689754,0.00038502994,0.000011113068,0.000049215487,0.000016028896,0.000517625],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978045,0.0005367515,0.0010448883,0.00017921014,0.00004606533,0.00038856166],"domain_scores_gemma":[0.998437,0.00023591258,0.0007003824,0.00023393983,0.00036249132,0.00003030191],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009457528,0.00020560132,0.00050943036,0.0005388221,0.00015322868,0.000022942713,0.00030919455,0.00042828047,0.00011520918],"category_scores_gemma":[0.00023397888,0.00016631733,0.00018931695,0.00021479612,0.00009236763,0.00019864771,0.00007008019,0.0003751479,0.0003754666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012479986,0.00003534863,0.0009952813,0.0000041126927,0.0002829908,0.000031679236,0.00007620409,0.000016661574,0.98724204,0.0018121083,0.00261593,0.0056396383],"study_design_scores_gemma":[0.002130435,0.0007119486,0.012233046,0.00002319386,0.000074004594,0.00022211135,0.00002840233,9.413833e-7,0.8269161,0.00053929747,0.15698132,0.0001392347],"about_ca_topic_score_codex":0.000038920105,"about_ca_topic_score_gemma":0.000015270236,"teacher_disagreement_score":0.16032597,"about_ca_system_score_codex":0.00018630766,"about_ca_system_score_gemma":0.00022837616,"threshold_uncertainty_score":0.67822236},"labels":[],"label_agreement":null},{"id":"W2107865650","doi":"10.1096/fj.00-0339com","title":"Toll‐like receptor 4: the missing link of the cerebral innate immune response triggered by circulating gram‐negative bacterial cell wall components","year":2001,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":504,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Medical Research Council Canada","keywords":"Biology; Innate immune system; TLR4; Toll-like receptor; Proinflammatory cytokine; Circumventricular organs; JUNB; Cell biology; Molecular biology; Signal transduction; Receptor; Gene expression; Immune system; Immunology; Inflammation; Gene; Biochemistry","score_opus":0.014429118577586856,"score_gpt":0.22242132831953051,"score_spread":0.20799220974194366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107865650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906709,0.0015165294,0.00006169451,0.005590563,0.001604293,0.000319549,0.000018187457,0.000018917046,0.00019932655],"genre_scores_gemma":[0.9967864,0.00012339385,0.000028807295,0.00022235914,0.00011873478,0.0000048993634,0.00003566902,0.000022999991,0.0026567446],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9947352,0.0037724099,0.0007882838,0.00015549146,0.00012383693,0.00042480446],"domain_scores_gemma":[0.9976109,0.0008843403,0.0008787851,0.00045706434,0.00014352026,0.000025375008],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.002485963,0.00022698267,0.00032783626,0.00007831717,0.0013564305,0.00008681038,0.0007374502,0.00020246564,0.0008138633],"category_scores_gemma":[0.00034608814,0.00011392918,0.00028013627,0.0002286063,0.00039612848,0.00018110797,0.00014043537,0.0009603804,0.00009754371],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006210053,0.00005591537,0.00020063779,0.0000046318187,0.00017988688,0.0000035592168,0.0031077007,0.000018916573,0.9854406,0.000012635987,0.0012333173,0.00353215],"study_design_scores_gemma":[0.0031602785,0.00017182779,0.013761586,0.0001349174,0.000099439545,0.00057252165,0.00087628217,0.00006428848,0.9627387,0.00016720347,0.018072423,0.00018051555],"about_ca_topic_score_codex":0.000095568306,"about_ca_topic_score_gemma":0.0000018260421,"teacher_disagreement_score":0.022701878,"about_ca_system_score_codex":0.00009258465,"about_ca_system_score_gemma":0.0001672985,"threshold_uncertainty_score":0.9999437},"labels":[],"label_agreement":null},{"id":"W2107955975","doi":"10.1093/intimm/dxp044","title":"Synthetic methylated CpG ODNs are potent in vivo adjuvants when delivered in liposomal nanoparticles","year":2009,"lang":"en","type":"article","venue":"International Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; Arbutus Biopharma (Canada)","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"TLR9; CpG Oligodeoxynucleotide; Toll-Like Receptor 9; CpG site; DNA methylation; Methylation; In vivo; Chemistry; Oligonucleotide; Innate immune system; Folate receptor; Immune system; Receptor; Guanine; Molecular biology; Cell biology; Biology; Biochemistry; DNA; Gene expression; Immunology; Gene; Genetics; Nucleotide","score_opus":0.009537583772299808,"score_gpt":0.2364415463368946,"score_spread":0.2269039625645948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2107955975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914547,0.0027241188,0.00003741623,0.0032228052,0.0010480526,0.00020235323,0.000014207922,0.000060664854,0.001235679],"genre_scores_gemma":[0.99825466,0.00021939097,0.00005705329,0.00027154887,0.000020743622,0.000035566947,0.000051284787,0.00001178863,0.0010779565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819064,0.00039130088,0.0006073067,0.00032928254,0.00006062784,0.00042085396],"domain_scores_gemma":[0.9992724,0.00015428575,0.00019371607,0.00025369172,0.000113396825,0.000012514077],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030062496,0.0001983542,0.00032379874,0.0005406268,0.00005790591,0.000019191928,0.00042895653,0.00033205637,0.0012173717],"category_scores_gemma":[0.00023412959,0.00019663868,0.00008186256,0.00016143001,0.00012384195,0.0002429709,0.00008758226,0.00036299293,0.000565584],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012192363,0.00024705034,0.0033293872,0.000001973812,0.00013384761,0.00008174545,0.0006783309,0.000074631345,0.97884256,0.001753903,0.0002294374,0.013407921],"study_design_scores_gemma":[0.0031484722,0.0002736325,0.25363392,0.00013506234,0.000014754422,0.00019711342,0.00038202122,0.00012893227,0.7333394,0.0029997984,0.005487879,0.00025899836],"about_ca_topic_score_codex":0.00030096137,"about_ca_topic_score_gemma":0.00017157021,"teacher_disagreement_score":0.25030452,"about_ca_system_score_codex":0.00020266141,"about_ca_system_score_gemma":0.000053035044,"threshold_uncertainty_score":0.99969566},"labels":[],"label_agreement":null},{"id":"W2108297160","doi":"10.4049/jimmunol.179.7.4357","title":"TLR2 Signaling Renders Quiescent Naive and Memory CD4+ T Cells More Susceptible to Productive Infection with X4 and R5 HIV-Type 1","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Faculté de Médecine, Université Laval; Canadian Foundation for AIDS Research; Université Laval","keywords":"Effector; TLR2; Biology; Phenotype; Immune system; Immunology; Memory T cell; Virus; Virology; T cell; Receptor; Innate immune system; Cell biology; Genetics; Gene","score_opus":0.008066519503971867,"score_gpt":0.22833625123006385,"score_spread":0.220269731726092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108297160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922048,0.0048965835,0.0008431583,0.0010972011,0.0005909511,0.0002317466,8.3016096e-7,0.000014426731,0.00012030006],"genre_scores_gemma":[0.9979907,0.0009655378,0.00015569592,0.00013339719,0.00006333489,0.0000012289959,0.0000035759251,0.00001459114,0.00067191344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987424,0.0003856288,0.00038783177,0.00013510199,0.00004958682,0.0002994383],"domain_scores_gemma":[0.998956,0.00022170632,0.0003485726,0.00017604922,0.0002753745,0.000022282216],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014868645,0.00016332381,0.00028764145,0.00027948295,0.00025019253,0.000012648566,0.000120456185,0.0001614588,0.000052233085],"category_scores_gemma":[0.000118723365,0.00010486262,0.000033623073,0.00019411292,0.0004059414,0.00017786,0.00007484241,0.00049555727,0.000033215143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0062084612,0.000041748553,0.00058071926,0.000012128885,0.0003988145,0.000007391514,0.0073632696,0.000097490956,0.98051864,0.000055922952,0.0004586778,0.0042567225],"study_design_scores_gemma":[0.0013497346,0.0025925273,0.018227799,0.000091282935,0.00014252057,0.0018012507,0.006973941,9.889892e-7,0.96415085,0.000051360967,0.0044636554,0.00015408189],"about_ca_topic_score_codex":0.0000795444,"about_ca_topic_score_gemma":0.000019104235,"teacher_disagreement_score":0.01764708,"about_ca_system_score_codex":0.00007418656,"about_ca_system_score_gemma":0.00008243044,"threshold_uncertainty_score":0.42761734},"labels":[],"label_agreement":null},{"id":"W2108904221","doi":"10.1038/sj.bjp.0706021","title":"Erythromycin exerts <i>in vivo</i> anti‐inflammatory activity downregulating cell adhesion molecule expression","year":2004,"lang":"en","type":"article","venue":"British Journal of Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Generalitat Valenciana; Ministerio de Ciencia y Tecnología; Ministerio de Educación, Cultura y Deporte","keywords":"Downregulation and upregulation; Lipopolysaccharide; Chemistry; Myeloperoxidase; Intercellular Adhesion Molecule-1; Bronchoalveolar lavage; Cell adhesion molecule; Pharmacology; Tumor necrosis factor alpha; In vivo; Erythromycin; Inflammation; Immunology; Biology; Medicine; Internal medicine; Lung; Biochemistry; Antibiotics","score_opus":0.006286416138171304,"score_gpt":0.23856492773892815,"score_spread":0.23227851160075685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2108904221","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929159,0.0049459906,0.00021271838,0.00023003567,0.0010477266,0.00020430986,0.000004374747,0.000023661378,0.00041526594],"genre_scores_gemma":[0.9983754,0.0009546346,0.00015536745,0.00013986639,0.000121806326,0.000007110357,0.0000045446964,0.000021807087,0.00021946062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802125,0.00058247725,0.00069230323,0.00020800489,0.00008009093,0.00041586685],"domain_scores_gemma":[0.99901164,0.0001267308,0.0006092891,0.000081043,0.00013500164,0.00003629996],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00067318225,0.00017588545,0.0004352963,0.00024582114,0.00018435025,0.00002323078,0.00024191361,0.00030745592,0.00067777536],"category_scores_gemma":[0.000056189307,0.00019564723,0.00019700978,0.0001450433,0.00012301131,0.00046789568,0.000083863466,0.00069108204,0.00004385859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005426636,0.00030911504,0.00013335947,0.000036326746,0.000042267115,0.0007123237,0.00020895693,0.0013022687,0.98787665,0.0000040166688,0.004635899,0.0041961283],"study_design_scores_gemma":[0.006026497,0.00026649772,0.0031296418,0.00031885898,0.00004717966,0.0031609868,0.0000762052,0.000008453932,0.98384374,0.00004215731,0.002892587,0.00018721362],"about_ca_topic_score_codex":0.000056858822,"about_ca_topic_score_gemma":0.000009757384,"teacher_disagreement_score":0.0054838336,"about_ca_system_score_codex":0.00014458227,"about_ca_system_score_gemma":0.00017591946,"threshold_uncertainty_score":0.79782623},"labels":[],"label_agreement":null},{"id":"W2109382351","doi":"10.1186/1471-2156-9-50","title":"Bovine CD14 gene characterization and relationship between polymorphisms and surface expression on monocytes and polymorphonuclear neutrophils","year":2008,"lang":"en","type":"article","venue":"BMC Genetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Novalait; Université de Montréal; Public Health Agency of Canada; Dairy Farmers of Canada","keywords":"GenBank; Biology; Single-nucleotide polymorphism; Gene; Genetics; Coding region; Molecular biology; Genotype; CD14; SNP; Immune system","score_opus":0.03597086737029755,"score_gpt":0.23063524773178173,"score_spread":0.19466438036148417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109382351","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994652,0.0043138554,0.0004865225,0.0001782967,0.00009034835,0.00019301669,0.00002078239,0.000039133207,0.000026095051],"genre_scores_gemma":[0.9967404,0.0013777871,0.00062741456,0.000050960076,0.00005072508,0.0000034405573,0.00019679309,0.000020978521,0.00093152083],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991157,0.00017548625,0.00024043642,0.00024731923,0.000036566227,0.00018448524],"domain_scores_gemma":[0.9994264,0.00020728259,0.00011481336,0.00019034547,0.00002784349,0.000033304485],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00011073665,0.00015933384,0.00018552224,0.000089112305,0.00034980048,0.000019967847,0.00005438414,0.00021973526,0.000021051655],"category_scores_gemma":[0.0000576459,0.00015037731,0.000019875204,0.000067160436,0.00017149272,0.000091101196,0.00007683589,0.00013638944,0.000032471224],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018515767,0.000012076547,0.23275243,0.000008384398,0.000009833059,0.000001256338,0.00029159005,0.000004803619,0.7657245,0.000047305395,0.000036687965,0.0009260264],"study_design_scores_gemma":[0.00056315004,0.00018874946,0.6359597,0.000017055609,0.000017733468,0.000054875454,0.000015566564,0.000020155727,0.36216518,0.000023042929,0.00086225354,0.00011253685],"about_ca_topic_score_codex":0.0000112412,"about_ca_topic_score_gemma":7.4593373e-7,"teacher_disagreement_score":0.40355927,"about_ca_system_score_codex":0.000011712642,"about_ca_system_score_gemma":0.00002539941,"threshold_uncertainty_score":0.6132209},"labels":[],"label_agreement":null},{"id":"W2109646193","doi":"10.1152/ajpgi.00058.2013","title":"Kupffer cells and activation of endothelial TLR4 coordinate neutrophil adhesion within liver sinusoids during endotoxemia","year":2013,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Intravital microscopy; Endothelium; Biology; TLR4; Inflammation; Innate immune system; Immunology; Endothelial activation; Endothelial stem cell; Pathology; Cell biology; Medicine; Immune system; In vivo; Endocrinology","score_opus":0.005183405817157078,"score_gpt":0.18965638269556215,"score_spread":0.18447297687840508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109646193","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991366,0.00031634967,0.000043468255,0.000099123296,0.0001557781,0.00019387658,0.0000076043684,0.00001642411,0.000030770432],"genre_scores_gemma":[0.9985287,0.00030343476,0.0007713501,0.000087332766,0.00012348407,0.000008661407,0.000012659018,0.000020433567,0.00014393422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979283,0.00061230216,0.00069907145,0.00031159417,0.00005745452,0.00039127958],"domain_scores_gemma":[0.9977952,0.00043070214,0.0011924511,0.00018288053,0.00033581263,0.00006291017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001958287,0.00030521094,0.00077346456,0.00024367719,0.00016087973,0.000010855613,0.00020405544,0.00010130571,0.00018088425],"category_scores_gemma":[0.00010154171,0.00023704815,0.00014002653,0.00013711074,0.0013456603,0.0003450051,0.00014925911,0.0005377678,0.000040048526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022398322,0.00011210357,0.00043465843,0.00006527293,0.00011780107,0.00000637839,0.00048033835,0.00005132144,0.99350363,0.00019565703,0.00009949162,0.0026935444],"study_design_scores_gemma":[0.0015040543,0.00398882,0.23637205,0.0002074439,0.000063547974,0.001286656,0.00058315456,0.00007407599,0.7552878,0.00035867767,0.00007801761,0.00019565213],"about_ca_topic_score_codex":0.00039110624,"about_ca_topic_score_gemma":0.0000012806476,"teacher_disagreement_score":0.23821574,"about_ca_system_score_codex":0.00003279782,"about_ca_system_score_gemma":0.00007132466,"threshold_uncertainty_score":0.9666543},"labels":[],"label_agreement":null},{"id":"W2109821644","doi":"10.1128/cdli.12.11.1292-1297.2005","title":"Comparison of Lipopolysaccharide-Binding Functions of CD14 and MD-2","year":2005,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Recombinant DNA; CD14; Lipopolysaccharide; Biochemistry; Fusion protein; Binding protein; Biology; Plasma protein binding; Bacterial outer membrane; Lipid A; Escherichia coli; Binding site; Myristoylation; Chemistry; Molecular biology; Receptor; Membrane; Immunology; Gene","score_opus":0.03771483392730873,"score_gpt":0.356609687283036,"score_spread":0.31889485335572726,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109821644","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98476833,0.0135949,0.0001170618,0.0007178397,0.00044602435,0.000111472895,0.0000063961306,0.000023164244,0.00021481086],"genre_scores_gemma":[0.99697965,0.0020481648,0.00008627785,0.00003503709,0.000045398465,0.0000051003562,0.000028964692,0.000007650047,0.0007637691],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983388,0.00024359504,0.0010019414,0.00020790222,0.000017699622,0.00019005472],"domain_scores_gemma":[0.9987047,0.0006288316,0.00034702642,0.00021982878,0.00008386614,0.000015766132],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045837078,0.0001253247,0.00061295147,0.0001369799,0.000100186335,0.0000034760506,0.00010659987,0.00030378773,0.00025779346],"category_scores_gemma":[0.00032875853,0.00010549535,0.00008962355,0.00007325221,0.0003196906,0.00009470812,0.00013467068,0.0003294948,0.0000758669],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009842202,0.00028838747,0.12437578,0.000024935345,0.00034182132,3.022043e-7,0.00025656357,0.0000013851806,0.7263885,0.0018235182,0.0013783765,0.14413616],"study_design_scores_gemma":[0.0054140138,0.0020954441,0.31996173,0.000087575005,0.00023189398,0.00009574619,0.0008599743,0.000050957526,0.6070153,0.00019371025,0.063722014,0.00027160402],"about_ca_topic_score_codex":0.00003725044,"about_ca_topic_score_gemma":0.000015469699,"teacher_disagreement_score":0.19558595,"about_ca_system_score_codex":0.0000051559527,"about_ca_system_score_gemma":0.000029857118,"threshold_uncertainty_score":0.43019757},"labels":[],"label_agreement":null},{"id":"W2109821775","doi":"10.1186/1745-6215-15-218","title":"The EUPHRATES trial (Evaluating the Use of Polymyxin B Hemoperfusion in a Randomized controlled trial of Adults Treated for Endotoxemia and Septic shock): study protocol for a randomized controlled trial","year":2014,"lang":"en","type":"article","venue":"Trials","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Michael's Hospital","funders":"University of Toronto; Medical Center, University of Pittsburgh; University of Alberta; University of Pittsburgh","keywords":"Hemoperfusion; Medicine; Septic shock; Randomized controlled trial; Sepsis; Placebo; Clinical endpoint; Intensive care medicine; Interim analysis; Internal medicine","score_opus":0.07219346618916545,"score_gpt":0.3883827289817734,"score_spread":0.31618926279260795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2109821775","genre_codex":"protocol","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":"protocol","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4954949,0.00010780159,0.00012976617,0.000116707495,0.00046626612,0.50364846,0.0000057684892,0.000014991027,0.000015329428],"genre_scores_gemma":[0.33029303,0.000020068535,0.000052203035,0.000013974433,0.00020057024,0.6687521,0.00001966198,0.000022844542,0.00062557455],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9440059,0.047743574,0.0071672197,0.00042809584,0.00019775603,0.00045742685],"domain_scores_gemma":[0.8201853,0.17480369,0.0041509275,0.0004320984,0.0004092651,0.000018731109],"candidate_categories":["metaresearch"],"consensus_categories":["metaresearch"],"category_scores_codex":[0.09374429,0.00044066232,0.010498489,0.0002713695,0.00037930746,0.00008221944,0.00028747204,0.0003590124,0.000051615887],"category_scores_gemma":[0.18094969,0.00018556538,0.0023021551,0.000160204,0.00045455733,0.00011885658,0.00006120434,0.00020036535,0.0000016789629],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9351955,0.00090970256,7.2524415e-7,0.000041817795,0.0022930228,1.14317714e-7,0.0011470454,0.000015019804,0.057393804,0.00021467764,0.0000649004,0.0027236661],"study_design_scores_gemma":[0.9543861,0.016790908,4.473735e-7,0.00014855737,0.0023541097,0.0000010242462,0.00025197223,0.004054912,0.021444691,0.0002528263,0.0001364307,0.00017799606],"about_ca_topic_score_codex":0.00021151658,"about_ca_topic_score_gemma":0.00004538769,"teacher_disagreement_score":0.16520187,"about_ca_system_score_codex":0.000030656956,"about_ca_system_score_gemma":0.0003254017,"threshold_uncertainty_score":0.933181},"labels":[],"label_agreement":null},{"id":"W2110395890","doi":"10.1111/all.12675","title":"<scp>MPLA</scp> shows attenuated pro‐inflammatory properties and diminished capacity to activate mast cells in comparison with <scp>LPS</scp>","year":2015,"lang":"en","type":"article","venue":"Allergy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Deutsche Forschungsgemeinschaft; Canadian Institutes of Health Research; Medizinische Universität Wien; European Commission","keywords":"Lipopolysaccharide; Immune system; Tumor necrosis factor alpha; Cytokine; Immunology; Ex vivo; Monocyte; Inflammation; Biology; In vivo","score_opus":0.041246042736191584,"score_gpt":0.22250900981547503,"score_spread":0.18126296707928344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110395890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952135,0.00076112227,0.000055380766,0.00016852628,0.00031533896,0.0007120657,0.0000108470085,0.000121962345,0.0026412746],"genre_scores_gemma":[0.9937729,0.000039894618,0.0001173293,0.00017230422,0.000037665017,0.0001404587,0.000061950035,0.000044513195,0.0056129345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99776495,0.0004518054,0.0005309521,0.00048010633,0.00011093002,0.0006612433],"domain_scores_gemma":[0.99886787,0.0002302888,0.00022028162,0.00039541168,0.00018580856,0.00010031415],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004966835,0.00037385285,0.0005419301,0.00025917173,0.00016202137,0.00006024087,0.00026952632,0.00036692023,0.000015511658],"category_scores_gemma":[0.00031689,0.00029695866,0.000047101577,0.00023574333,0.00025440136,0.00034473688,0.00016354326,0.00043934165,0.00034370308],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043067668,0.00020972647,0.007922502,0.000052846255,0.00032535254,0.000022114715,0.016638394,0.00030984732,0.9588138,0.00015803191,0.0143025415,0.0008141605],"study_design_scores_gemma":[0.00253659,0.0006602708,0.026826272,0.00013081612,0.000025084368,0.000054595148,0.004304261,0.00008576146,0.7739372,0.000024625258,0.19128916,0.00012533333],"about_ca_topic_score_codex":0.00028077507,"about_ca_topic_score_gemma":0.0007151237,"teacher_disagreement_score":0.18487658,"about_ca_system_score_codex":0.000094064846,"about_ca_system_score_gemma":0.00015025123,"threshold_uncertainty_score":0.99994826},"labels":[],"label_agreement":null},{"id":"W2110717939","doi":"10.1158/1055-9965.epi-06-0189","title":"Interleukin-1β and Interleukin-1 Receptor Antagonist Gene Polymorphisms and Gastric Cancer: A Meta-analysis","year":2006,"lang":"en","type":"review","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":236,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Cancer Institute","keywords":"Odds ratio; Meta-analysis; Cancer; Interleukin 1 receptor antagonist; Internal medicine; Oncology; Medicine; Confidence interval; Publication bias; Gastroenterology; Receptor antagonist; Antagonist; Receptor","score_opus":0.10983261953886106,"score_gpt":0.3827246982773831,"score_spread":0.27289207873852206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110717939","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010071568,0.99494576,0.0006132831,0.00063029485,0.0011354801,0.001141733,0.00039404424,0.00009214348,0.00004008432],"genre_scores_gemma":[0.00038674564,0.9869469,0.00037934486,0.00015539824,0.00013153518,0.0013483607,0.0032666947,0.000069873895,0.0073151407],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99037343,0.004996772,0.0023148598,0.0014204987,0.000057907535,0.0008365042],"domain_scores_gemma":[0.9956761,0.0011840968,0.0022574887,0.0006881571,0.00011109122,0.000083093604],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0027753443,0.0009955517,0.00594817,0.0012450521,0.00033909862,0.000038218655,0.00041584173,0.0014856856,0.0020255577],"category_scores_gemma":[0.00020093018,0.00078341854,0.002688756,0.00079899165,0.00083336374,0.0002125247,0.00029443912,0.00071104144,0.00008399164],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038859074,0.00008630983,0.0008172384,0.0018155221,0.30732748,0.000007473298,0.0000629799,0.0000016370818,0.0016039973,0.00014024223,0.015960842,0.6717877],"study_design_scores_gemma":[0.0005490636,0.0001708972,0.0005082465,0.00068053574,0.2226765,0.00013420013,0.000013124933,0.0000040441714,0.0003084405,0.00014479576,0.77414197,0.0006681781],"about_ca_topic_score_codex":0.0016061581,"about_ca_topic_score_gemma":0.0006279311,"teacher_disagreement_score":0.75818115,"about_ca_system_score_codex":0.00044156017,"about_ca_system_score_gemma":0.00034823868,"threshold_uncertainty_score":0.9998106},"labels":[],"label_agreement":null},{"id":"W2110726506","doi":"10.3390/cells2020330","title":"Targeting Neutrophil Apoptosis for Enhancing the Resolution of Inflammation","year":2013,"lang":"en","type":"article","venue":"Cells","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Efferocytosis; Inflammation; Apoptosis; Annexin A1; Lipid signaling; Immunology; Biology; Cell biology; Annexin; Macrophage; In vitro; Biochemistry","score_opus":0.007241902556976016,"score_gpt":0.20484238913453456,"score_spread":0.19760048657755855,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110726506","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928711,0.0005769862,0.0046438626,0.0005467832,0.00045162727,0.0005416896,0.0000018931323,0.000024200475,0.00034185676],"genre_scores_gemma":[0.99855405,0.000052879433,0.00016479533,0.000028545684,0.00005644702,0.00008216306,0.0000521158,0.000007388739,0.0010016115],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993288,0.00011195085,0.00029630668,0.00008684533,0.000018343178,0.00015777511],"domain_scores_gemma":[0.99934185,0.00022351941,0.00016939823,0.00014102209,0.00011986974,0.000004355138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033997136,0.000067240064,0.00010409023,0.000045884826,0.00015860211,0.00001016124,0.00009915175,0.00010058517,0.00016954134],"category_scores_gemma":[0.00010038405,0.000047854275,0.000058453188,0.00006099745,0.00005580221,0.0001336463,0.000024107328,0.00007460197,0.0003202162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004082291,0.0000063066072,0.000005775573,0.000022255992,0.000021388963,7.61549e-9,0.00042130667,0.00014949545,0.9921777,0.0003742448,0.003382112,0.0033985386],"study_design_scores_gemma":[0.0002736368,0.000052662894,0.00025268958,0.000017402557,0.000015447611,5.59733e-7,0.00029822616,0.00021243942,0.98557,0.00018951381,0.013063126,0.000054265085],"about_ca_topic_score_codex":0.000054341075,"about_ca_topic_score_gemma":0.0000017728146,"teacher_disagreement_score":0.009681014,"about_ca_system_score_codex":0.000017275272,"about_ca_system_score_gemma":0.000020674821,"threshold_uncertainty_score":0.4115838},"labels":[],"label_agreement":null},{"id":"W2110853277","doi":"10.1084/jem.20070628","title":"Selective predisposition to bacterial infections in IRAK-4–deficient children: IRAK-4–dependent TLRs are otherwise redundant in protective immunity","year":2007,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":392,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; SickKids Foundation; University of Toronto; Hospital for Sick Children; Dalhousie University","funders":"Hungarian Scientific Research Fund; Deutsche Forschungsgemeinschaft; European Commission","keywords":"Immunology; Toll-like receptor; Immunity; Biology; Innate immune system; Myeloid; Common variable immunodeficiency; Medicine; Immune system; Antibody","score_opus":0.0088075643539857,"score_gpt":0.27288762822279805,"score_spread":0.26408006386881233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2110853277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995247,0.0019039719,0.0003821083,0.00049688306,0.00078656786,0.0008425907,0.000003500055,0.000011174487,0.00032619105],"genre_scores_gemma":[0.99959743,0.00004371583,0.000011553768,0.000104378865,0.00014635232,0.00001837469,0.000010853536,0.000014245449,0.000053093576],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980039,0.0006728273,0.0007682899,0.00012710299,0.00012070983,0.0003071678],"domain_scores_gemma":[0.9990534,0.00017855634,0.00043764611,0.00017983084,0.000115585375,0.000034966255],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022723917,0.00018099161,0.0003564219,0.0005590525,0.00016859021,0.0000072216253,0.00021332294,0.00013356475,0.00016120219],"category_scores_gemma":[0.0002387461,0.00012110258,0.000057620247,0.00042651684,0.00017931942,0.00016863455,0.00006634588,0.0006422054,0.000023469172],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0060765534,0.00056698156,0.0016453181,0.0000033873625,0.00007276974,0.000010158878,0.014938273,0.00008869322,0.9758467,0.00003046351,0.00011506943,0.00060565403],"study_design_scores_gemma":[0.0038098206,0.0028717006,0.17110793,0.0003917595,0.00002602664,0.0005887084,0.009464591,0.0000018390084,0.8114942,0.00003665471,0.00009129759,0.000115496834],"about_ca_topic_score_codex":0.00076477573,"about_ca_topic_score_gemma":0.0002195189,"teacher_disagreement_score":0.16946262,"about_ca_system_score_codex":0.00058517844,"about_ca_system_score_gemma":0.00007090138,"threshold_uncertainty_score":0.493842},"labels":[],"label_agreement":null},{"id":"W2111076710","doi":"10.1093/carcin/bgt228","title":"Innate immunity gene polymorphisms and the risk of colorectal neoplasia","year":2013,"lang":"en","type":"article","venue":"Carcinogenesis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; National Cancer Institute; National Institutes of Health; Association Anne de Bretagne Genetique; Conseil Régional des Pays de la Loire; Groupement des Entreprises Françaises dans la lutte contre le Cancer; Bundesministerium für Bildung und Forschung; National Institute on Aging; Deutsche Forschungsgemeinschaft","keywords":"Colorectal cancer; Colorectal adenoma; Odds ratio; Internal medicine; Single-nucleotide polymorphism; Oncology; Medicine; Gastroenterology; Allele; Cancer; Genotype; Biology; Genetics; Gene","score_opus":0.005148337954694334,"score_gpt":0.1835879920471021,"score_spread":0.17843965409240778,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111076710","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989604,0.009144981,0.0000311967,0.000233764,0.00019364481,0.00040520958,0.0000112886855,0.000021403119,0.00035453524],"genre_scores_gemma":[0.99869704,0.00070351444,0.000035145673,0.00004587272,0.000010504201,0.000078200595,0.000025906565,0.000010037017,0.00039380102],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99880373,0.0006052286,0.00025800156,0.00012089004,0.00002663237,0.00018553341],"domain_scores_gemma":[0.9991511,0.000316464,0.00016587634,0.00026686696,0.000087648375,0.000012014904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003942445,0.00012011381,0.00024423885,0.000074406256,0.00022739779,0.000011199631,0.00016167616,0.0001413179,0.00029726],"category_scores_gemma":[0.00014245628,0.0000768818,0.00009341424,0.000115643656,0.000508489,0.00008252997,0.00009939588,0.00013728905,0.00018510467],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004858792,0.00001677403,0.0279661,0.000005691462,0.00019491522,4.6945314e-7,0.000922824,0.0000027386359,0.96193206,0.00037861097,0.0002250286,0.007868925],"study_design_scores_gemma":[0.0011647099,0.000047115383,0.39913633,0.0000039352353,0.00006984786,0.00003626733,0.00014179168,0.000018713672,0.5988255,0.00013791665,0.00035393733,0.00006391568],"about_ca_topic_score_codex":0.001831322,"about_ca_topic_score_gemma":0.0000112146345,"teacher_disagreement_score":0.37117022,"about_ca_system_score_codex":0.000012410844,"about_ca_system_score_gemma":0.0000360598,"threshold_uncertainty_score":0.32547885},"labels":[],"label_agreement":null},{"id":"W2111115205","doi":"10.1128/aac.47.9.2796-2803.2003","title":"Association of the Endotoxin Antagonist E5564 with High-Density Lipoproteins In Vitro: Dependence on Low-Density and Triglyceride-Rich Lipoprotein Concentrations","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Eisai","keywords":"Triglyceride; Lipoprotein; Chemistry; Incubation; High-density lipoprotein; Endocrinology; Cholesteryl ester; Cholesterol; Cholesterylester transfer protein; Internal medicine; Low-density lipoprotein; Chromatography; Biochemistry; Biology; Medicine","score_opus":0.004795785148237089,"score_gpt":0.19730954485269867,"score_spread":0.19251375970446158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111115205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978423,0.000042525415,0.00003549943,0.0012334803,0.00014150284,0.0005755516,0.000014180682,0.000014124468,0.00010080083],"genre_scores_gemma":[0.9979612,0.00037760555,0.00006573687,0.00077549584,0.000012615218,0.000009789206,0.000020783942,0.00001257917,0.0007641903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988968,0.00026270634,0.00027674172,0.0002543269,0.00006570264,0.0002437256],"domain_scores_gemma":[0.9994101,0.00006408152,0.0002470762,0.0002015539,0.00006219884,0.000015008068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028775775,0.00017443298,0.00027494517,0.000055447763,0.00025403834,0.000030931333,0.000092213406,0.00019410273,0.000056810954],"category_scores_gemma":[0.000051354742,0.00012554199,0.00004191518,0.0001543072,0.000151221,0.00010258511,0.000021794502,0.00023103463,0.000007226921],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010419185,0.00017400665,0.015876275,0.00001965168,0.000094304785,0.0000025182908,0.00045016763,0.0000031637614,0.98016393,0.000256631,0.0003789881,0.001538471],"study_design_scores_gemma":[0.0028618383,0.00010785549,0.1129835,0.00006202874,0.000019741467,0.000022553648,0.000050027294,0.0000026074667,0.8822947,0.000035037912,0.0014284507,0.00013162041],"about_ca_topic_score_codex":0.0006738527,"about_ca_topic_score_gemma":0.00021424366,"teacher_disagreement_score":0.097869165,"about_ca_system_score_codex":0.00006198528,"about_ca_system_score_gemma":0.00006626672,"threshold_uncertainty_score":0.51194537},"labels":[],"label_agreement":null},{"id":"W2111418333","doi":"10.1128/iai.72.3.1223-1229.2004","title":"Role of MyD88 in Diminished Tumor Necrosis Factor Alpha Production by Newborn Mononuclear Cells in Response to Lipopolysaccharide","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":164,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; IWK Health Centre; Sick Kids Foundation","keywords":"Tumor necrosis factor alpha; CD14; Peripheral blood mononuclear cell; Lipopolysaccharide; Biology; Secretion; Internal medicine; Endocrinology; Cytokine; Immunology; Immune system; In vitro; Medicine; Biochemistry","score_opus":0.006552624152650698,"score_gpt":0.2238944004802545,"score_spread":0.2173417763276038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111418333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99867076,0.00020704682,0.00003161708,0.00028803537,0.0002981468,0.0003694462,0.000009249124,0.000039245504,0.00008644264],"genre_scores_gemma":[0.9994463,0.00012435121,0.000042343796,0.00006540017,0.000007809354,0.000027921753,0.000015545422,0.000013453887,0.00025692387],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986419,0.00046982884,0.0004189762,0.00020689095,0.000034618395,0.00022774824],"domain_scores_gemma":[0.9994742,0.00007745366,0.00012579926,0.00024461094,0.00005592833,0.000021997106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00057188707,0.0001503755,0.00025154336,0.00039690672,0.000113202914,0.000017259506,0.00008114591,0.00016036203,0.00008741307],"category_scores_gemma":[0.0003270337,0.00015454262,0.00004694839,0.00030260676,0.0000835353,0.00028406802,0.00006334468,0.00033308394,0.000085979],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025751102,0.00025549403,0.003086435,0.000011395716,0.000016520913,5.24618e-7,0.0036879512,0.00007313884,0.98217237,0.000017519358,0.000058235593,0.008045294],"study_design_scores_gemma":[0.0011019418,0.00034662316,0.19205932,0.000054401753,0.000005705414,0.000011352084,0.00035756957,0.0000021006254,0.7989658,0.00008426177,0.006887161,0.00012374208],"about_ca_topic_score_codex":0.00965398,"about_ca_topic_score_gemma":0.00046396654,"teacher_disagreement_score":0.18897289,"about_ca_system_score_codex":0.00016566478,"about_ca_system_score_gemma":0.000097136384,"threshold_uncertainty_score":0.9969408},"labels":[],"label_agreement":null},{"id":"W2111477060","doi":"10.1007/978-1-4419-6612-4_18","title":"Workshop Summary: Functions of the TNF Family in Infectious Disease","year":2010,"lang":"en","type":"book-chapter","venue":"Advances in experimental medicine and biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Session (web analytics); Immune system; Tumor necrosis factor alpha; Immunology; Infectious disease (medical specialty); Disease; Medicine; Pathology; Computer science; World Wide Web","score_opus":0.015762059172071057,"score_gpt":0.290181878852815,"score_spread":0.2744198196807439,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111477060","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.26673678,0.5625297,0.000018238865,0.0009917655,0.0057747546,0.0009201135,0.000034435663,0.000036659338,0.16295758],"genre_scores_gemma":[0.9539889,0.014432373,0.000006432068,0.00035810724,0.00011253977,0.000054758362,0.0002145478,0.00002021958,0.030812098],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99899966,0.00009111497,0.00043416308,0.00026677886,0.000023474104,0.00018483734],"domain_scores_gemma":[0.99928105,0.00022566583,0.00020160952,0.00025237555,0.000022622778,0.000016706746],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014174788,0.00022238509,0.0004220076,0.00022812832,0.00006871762,0.0000013097174,0.00014389081,0.00043423157,0.00025400487],"category_scores_gemma":[0.00008629782,0.00014285317,0.00006086306,0.000057253237,0.0012022816,0.00007542463,0.00012103847,0.0005968178,0.000014816773],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012389086,0.00014836881,0.0051506036,0.00006201379,0.0000884234,0.000010481926,0.0009179337,0.0000029693445,0.9061571,0.040412415,0.00065906096,0.045151718],"study_design_scores_gemma":[0.0027443431,0.0006239923,0.0030490619,0.0008502797,0.000052991723,0.000031977404,0.00089623145,0.0000010085133,0.022405647,0.008159173,0.96084803,0.00033724753],"about_ca_topic_score_codex":0.00007848937,"about_ca_topic_score_gemma":0.00019515114,"teacher_disagreement_score":0.960189,"about_ca_system_score_codex":0.000037901897,"about_ca_system_score_gemma":0.000047400586,"threshold_uncertainty_score":0.5825383},"labels":[],"label_agreement":null},{"id":"W2111602871","doi":"10.1038/sj.bjp.0707443","title":"α‐4/β‐1 and α‐L/β‐2 integrins mediate cytokine induced lung leukocyte‐epithelial adhesion and injury","year":2007,"lang":"en","type":"article","venue":"British Journal of Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Cytokine; Cell adhesion molecule; Lung; Bronchoalveolar lavage; Inflammation; Pathology; Medicine; Immunology; Chemistry; Internal medicine","score_opus":0.008665024960271269,"score_gpt":0.27703831661340056,"score_spread":0.2683732916531293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111602871","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98796105,0.009576322,0.00011984361,0.00033178699,0.0017427433,0.00012924704,0.000007644756,0.000015786067,0.00011559457],"genre_scores_gemma":[0.9949965,0.0042156004,0.000060754563,0.00027154887,0.00029016464,0.0000019183954,0.000007722953,0.0000140217435,0.0001417968],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985862,0.0003012895,0.0006033572,0.00014592144,0.000048798116,0.00031445472],"domain_scores_gemma":[0.99913394,0.00024981593,0.00035829813,0.00003912717,0.00016850691,0.000050333114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014290685,0.00013454969,0.0003427411,0.00025735208,0.00016717362,0.000022504675,0.0001309072,0.0002706831,0.0002745871],"category_scores_gemma":[0.00014853837,0.0001384066,0.000061668434,0.00009469356,0.00018600801,0.00026000984,0.00009240998,0.0007027982,0.000016117992],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001554217,0.000053070507,0.00027301826,0.00001689022,0.00014696326,0.00035195277,0.00022129063,2.2578392e-7,0.8928191,0.000031518386,0.002995593,0.10153618],"study_design_scores_gemma":[0.0035632828,0.0005803578,0.022043785,0.000083168576,0.0001268726,0.011877156,0.00014902295,0.0000047482526,0.9461694,0.000053803906,0.015200435,0.00014799705],"about_ca_topic_score_codex":0.0000533088,"about_ca_topic_score_gemma":0.000017225408,"teacher_disagreement_score":0.101388186,"about_ca_system_score_codex":0.00005479559,"about_ca_system_score_gemma":0.000092452225,"threshold_uncertainty_score":0.5644057},"labels":[],"label_agreement":null},{"id":"W2111644555","doi":"10.1152/physiolgenomics.00153.2004","title":"DNA microarray analysis of gene expression in alveolar epithelial cells in response to TNFα, LPS, and cyclic stretch","year":2004,"lang":"en","type":"article","venue":"Physiological Genomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":147,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; St. Michael's Hospital","funders":"","keywords":"Biology; Proinflammatory cytokine; Tumor necrosis factor alpha; Gene expression; Signal transduction; Chemokine; Cell biology; Microarray analysis techniques; Inflammation; Molecular biology; Immunology; Gene; Genetics","score_opus":0.011720168663166294,"score_gpt":0.23469189424571058,"score_spread":0.22297172558254427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111644555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9988457,0.00052895077,0.00011281571,0.00013292063,0.00007274826,0.00023681017,0.00004618861,0.000012950778,0.00001092567],"genre_scores_gemma":[0.99888074,0.00023769014,0.00061736646,0.000117321215,0.000010712197,0.000016464039,0.00008045667,0.000008312969,0.00003092761],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983494,0.00048019076,0.00048761323,0.00035054787,0.000028866325,0.0003033324],"domain_scores_gemma":[0.9993696,0.00018846993,0.00012218741,0.00026617452,0.000027341397,0.000026187468],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051438046,0.00016954912,0.00050831755,0.0004415671,0.00004778614,0.000006983047,0.00019037152,0.0002773049,0.00007304631],"category_scores_gemma":[0.00012502928,0.00014032681,0.00011314021,0.00047891252,0.00011445999,0.000055777167,0.000113292765,0.00020845019,0.000056494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035779376,0.00015228613,0.00047038787,0.0000051627117,0.000083211075,0.0000049398236,0.0012581223,0.0038159138,0.9899278,0.000022775701,0.00000836766,0.00067309337],"study_design_scores_gemma":[0.0010033227,0.00021816081,0.1954034,0.000014641185,0.00003626107,0.0000013872659,0.00017534244,0.000012791276,0.80242825,0.00018528009,0.0003880727,0.00013307837],"about_ca_topic_score_codex":0.00010698765,"about_ca_topic_score_gemma":0.000035855737,"teacher_disagreement_score":0.19493301,"about_ca_system_score_codex":0.00010209106,"about_ca_system_score_gemma":0.000048916754,"threshold_uncertainty_score":0.5722361},"labels":[],"label_agreement":null},{"id":"W2111667226","doi":"10.4049/jimmunol.169.4.2111","title":"Lipopolysaccharide-Induced Leukocyte-Endothelial Cell Interactions: A Role for CD14 Versus Toll-Like Receptor 4 Within Microvessels","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"U.S. Public Health Service","keywords":"CD14; Intravital microscopy; Lipopolysaccharide; TLR4; Biology; Endothelial stem cell; Receptor; Microcirculation; Inflammation; Immunology; Internal medicine; Endocrinology; Immune system; Medicine; In vitro; Biochemistry","score_opus":0.02209580952458294,"score_gpt":0.24828061498612994,"score_spread":0.226184805461547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111667226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9784476,0.010590239,0.00030828966,0.0013044673,0.008410724,0.00033219857,0.000011092208,0.000032655087,0.00056274654],"genre_scores_gemma":[0.9929305,0.0011122645,0.00019936306,0.00017345385,0.00023028556,0.000019835223,0.0000113867545,0.00003375351,0.005289215],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978272,0.00064395415,0.00091170287,0.0001503291,0.000054982862,0.0004118764],"domain_scores_gemma":[0.99724245,0.0010753794,0.0010038886,0.00037579672,0.00028226047,0.000020237807],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008401927,0.00024013636,0.00045406917,0.00027072418,0.00037137317,0.000027376685,0.00062314566,0.00027639253,0.00095083396],"category_scores_gemma":[0.00032724478,0.00017073633,0.000263526,0.00010801992,0.00018485845,0.00033377446,0.00008309969,0.00079645717,0.00074666325],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008888996,0.00015349517,0.0000033767144,0.000007394475,0.000566927,0.0000023026532,0.0029040484,0.00001258956,0.9764218,0.00023713283,0.0051444834,0.0056574955],"study_design_scores_gemma":[0.0052378206,0.0016715671,0.000019501662,0.000039286442,0.00017267175,0.0006356581,0.0029535596,0.000023154036,0.89188564,0.00010149952,0.0970882,0.00017145084],"about_ca_topic_score_codex":0.000051854702,"about_ca_topic_score_gemma":0.000014729293,"teacher_disagreement_score":0.09194372,"about_ca_system_score_codex":0.00013874556,"about_ca_system_score_gemma":0.00010661185,"threshold_uncertainty_score":0.99996245},"labels":[],"label_agreement":null},{"id":"W2111919009","doi":"10.1093/embo-reports/kve155","title":"CARD4/Nod1 mediates NF‐κB and JNK activation by invasive Shigella flexneri","year":2001,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":624,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Shigella flexneri; NOD1; NF-κB; Microbiology; Shigella; Biology; Signal transduction; Cell biology; Immunology; Bacteria; Escherichia coli; NOD2; Salmonella; Innate immune system; Immune system; Biochemistry; Genetics; Gene","score_opus":0.007181244065906754,"score_gpt":0.21623455934891386,"score_spread":0.2090533152830071,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2111919009","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99082494,0.0024043657,0.000048511778,0.00061881007,0.000526744,0.00020247685,0.000002144079,0.000075955984,0.0052960757],"genre_scores_gemma":[0.9915856,0.00073200447,0.000015009977,0.00016282997,0.000052569092,0.00002381783,0.00036495682,0.000015432894,0.0070477426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894154,0.00012727885,0.0003703231,0.00027062095,0.00004671952,0.00024350373],"domain_scores_gemma":[0.9992515,0.00014268939,0.00024879898,0.00026297133,0.00007220501,0.000021853497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003153031,0.00015094661,0.00021723923,0.00008619816,0.00017064024,0.000023588918,0.00005258533,0.00023769344,0.00041132484],"category_scores_gemma":[0.00031308856,0.00013595566,0.00004806241,0.00010298137,0.00009751456,0.00021799585,0.000048183145,0.00016149417,0.000112344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010343014,0.000029893386,0.0077315234,0.000010832571,0.00008256296,0.0000795654,0.0006558763,0.0000022758384,0.96625924,0.00004644704,0.019413514,0.0055848463],"study_design_scores_gemma":[0.0002892747,0.000069412956,0.009824842,0.000028341246,0.000022613774,0.0007554331,0.00019796863,9.328468e-7,0.7881659,0.00025118908,0.20023435,0.00015969125],"about_ca_topic_score_codex":0.00014905218,"about_ca_topic_score_gemma":0.000014848322,"teacher_disagreement_score":0.18082084,"about_ca_system_score_codex":0.000035126814,"about_ca_system_score_gemma":0.000071126946,"threshold_uncertainty_score":0.5544111},"labels":[],"label_agreement":null},{"id":"W2112269300","doi":"10.1128/jvi.80.7.3515-3522.2006","title":"Tumor Necrosis Factor Alpha Enhances Influenza A Virus-Induced Expression of Antiviral Cytokines by Activating RIG-I Gene Expression","year":2006,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council; Academy of Finland","keywords":"Biology; Sendai virus; RIG-I; TLR3; Molecular biology; Tumor necrosis factor alpha; Gene expression; Interferon; IRF3; Mononegavirales; Virus; Paramyxoviridae; Virology; Innate immune system; Gene; Toll-like receptor; Immune system; Immunology","score_opus":0.011794442968756686,"score_gpt":0.25685775222470886,"score_spread":0.24506330925595218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112269300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970418,0.0016829685,0.0004235187,0.00008861756,0.0005171071,0.00011457981,0.000019402718,0.000017175515,0.000094794166],"genre_scores_gemma":[0.9991877,0.00007168344,0.00034230415,0.000104233135,0.00012128461,0.0000054817806,0.000016964994,0.000019238561,0.00013108508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978275,0.0004929046,0.001057849,0.00019045593,0.000094055664,0.00033727553],"domain_scores_gemma":[0.9977483,0.00027750354,0.0015779731,0.00019593252,0.00018078256,0.000019513467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036422338,0.00022789919,0.0006026899,0.00026733772,0.00016168845,0.000013987146,0.00028352023,0.00033297387,0.00019839866],"category_scores_gemma":[0.00019494854,0.00017223989,0.00019296286,0.0001240645,0.00014188064,0.00048186458,0.00008554422,0.00043135264,0.00002431731],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019143339,0.00019623808,0.0013905953,0.000016076861,0.000053455467,0.000008953962,0.0003231806,0.0000075288003,0.9928692,0.000007806687,0.0013736159,0.0018390347],"study_design_scores_gemma":[0.0017842414,0.00078426755,0.012491749,0.00011083827,0.000026267078,0.00010502107,0.00006122916,0.0000024635515,0.97788703,0.00008756321,0.0065045417,0.00015479246],"about_ca_topic_score_codex":0.00010149241,"about_ca_topic_score_gemma":0.0000039259744,"teacher_disagreement_score":0.014982154,"about_ca_system_score_codex":0.00005078776,"about_ca_system_score_gemma":0.00011456677,"threshold_uncertainty_score":0.7023739},"labels":[],"label_agreement":null},{"id":"W2112663666","doi":"10.1093/infdis/jir276","title":"A Modulatory Interleukin-10 Response to Staphylococcal Peptidoglycan Prevents Th1/Th17 Adaptive Immunity to Staphylococcus aureus","year":2011,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":98,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Staphylococcus aureus; Peptidoglycan; Microbiology; Immunity; Acquired immune system; Staphylococcal infections; Immunology; Immune system; Interleukin; Biology; Chemistry; Cytokine; Bacteria","score_opus":0.014672827480196585,"score_gpt":0.2395909117811811,"score_spread":0.22491808430098453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112663666","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99634814,0.0010284171,0.0007548324,0.00012597122,0.0006409543,0.0005430488,0.000038695653,0.000052441723,0.0004674827],"genre_scores_gemma":[0.99856985,0.000039210598,0.000032139546,0.00030047374,0.00008084644,0.000025996933,0.0000044148983,0.000030109042,0.0009169526],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9964233,0.0021876027,0.0006807967,0.00016386525,0.00012447187,0.00041995075],"domain_scores_gemma":[0.99795777,0.0004535539,0.000471397,0.0005431605,0.00043074472,0.00014339903],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013674077,0.00028708,0.0004192911,0.0005145509,0.00035966016,0.000025214249,0.00062563096,0.00013975309,0.0008496386],"category_scores_gemma":[0.0007775024,0.00020147221,0.0002822032,0.00032914305,0.00017526696,0.00025630227,0.00022765208,0.0004857105,0.00051761954],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.09083038,0.0013101791,0.0060552284,0.000025162519,0.0014669679,0.00005103037,0.021008372,0.0004300177,0.8574193,0.0001248152,0.01294391,0.00833461],"study_design_scores_gemma":[0.006136162,0.016709663,0.6260927,0.000544932,0.0008161069,0.0003846494,0.006458347,0.0000094071775,0.32058483,0.0013301568,0.019971536,0.0009615137],"about_ca_topic_score_codex":0.00020468138,"about_ca_topic_score_gemma":0.000042077143,"teacher_disagreement_score":0.62003744,"about_ca_system_score_codex":0.00023905982,"about_ca_system_score_gemma":0.0003343585,"threshold_uncertainty_score":0.9302947},"labels":[],"label_agreement":null},{"id":"W2112950614","doi":"10.1016/s0969-2126(00)00143-x","title":"A conserved structural motif for lipopolysaccharide recognition by procaryotic and eucaryotic proteins","year":2000,"lang":"en","type":"article","venue":"Structure","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":206,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council; Medical Research Council Canada; Deutsche Forschungsgemeinschaft; Deutscher Akademischer Austauschdienst; North Atlantic Treaty Organization","keywords":"Lipopolysaccharide; Bacterial outer membrane; Lipid A; Innate immune system; Chemistry; Escherichia coli; Cell biology; Biochemistry; Plasma protein binding; Protein structure; Biophysics; Biology; Receptor; Gene; Immunology","score_opus":0.006906108697215097,"score_gpt":0.21133067290650492,"score_spread":0.20442456420928984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2112950614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99643356,0.0015421319,0.000039524362,0.0003534836,0.0002275685,0.0009998294,0.00021743098,0.0000786375,0.000107853026],"genre_scores_gemma":[0.9965609,0.00003802157,0.00029451097,0.00017036681,0.00004567622,0.00006194053,0.00089112925,0.000020955464,0.0019165374],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999034,0.0001098105,0.0002472266,0.00027970003,0.000029993525,0.00029925315],"domain_scores_gemma":[0.9996024,0.000067303,0.00008069473,0.0001665752,0.000061197235,0.000021872533],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007704085,0.00019461632,0.00022067587,0.00005644801,0.00025898727,0.000032887194,0.00010004811,0.00026875475,0.0017113502],"category_scores_gemma":[0.00007155423,0.00016430975,0.000058122885,0.000058525162,0.00013450108,0.00016788645,0.000015500473,0.00020534483,0.000054701748],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009674815,0.000008551123,0.00029876883,0.00008008454,0.00011012945,0.0000010791254,0.0005195382,0.0000015442047,0.90894854,0.00010672486,0.0017793712,0.087178186],"study_design_scores_gemma":[0.003476193,0.0005127516,0.009372507,0.000082573526,0.00014620696,0.00034321603,0.00022058826,0.0000884658,0.9661611,0.008237711,0.010859928,0.0004988074],"about_ca_topic_score_codex":0.00006584721,"about_ca_topic_score_gemma":0.00001831399,"teacher_disagreement_score":0.08667938,"about_ca_system_score_codex":0.000023259974,"about_ca_system_score_gemma":0.000045828852,"threshold_uncertainty_score":0.99920124},"labels":[],"label_agreement":null},{"id":"W2113234505","doi":"10.1136/gut.51.6.842","title":"Lipopolysaccharide modulation of normal enterocyte turnover by toll-like receptors is mediated by endogenously produced tumour necrosis factor α","year":2002,"lang":"en","type":"article","venue":"Gut","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal; Université de Sherbrooke","funders":"Rheinische Friedrich-Wilhelms-Universität Bonn; Institut National de la Santé et de la Recherche Médicale; Deutsche Forschungsgemeinschaft","keywords":"Biology; Tumor necrosis factor alpha; Lipopolysaccharide; Cytokine; TLR4; Cell biology; Receptor; Toll-like receptor; Signal transduction; Immunology; Innate immune system; Biochemistry","score_opus":0.012690006942978425,"score_gpt":0.2050292424564634,"score_spread":0.19233923551348497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113234505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962838,0.0017646793,0.000047679227,0.00037581273,0.00087878056,0.00029152283,0.00013140558,0.00006980766,0.00015647309],"genre_scores_gemma":[0.9904791,0.00023044193,0.000012825715,0.00016579655,0.000026529686,0.00002073848,0.00048756154,0.000022607941,0.00855441],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986446,0.00015770391,0.0004886101,0.0002823501,0.000078713434,0.0003480033],"domain_scores_gemma":[0.9992679,0.00006831619,0.00027432255,0.00027363215,0.000091252194,0.00002458661],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00012037288,0.00020808575,0.00029318046,0.000114551796,0.00012852415,0.000015651656,0.00019523181,0.00025728828,0.0033407179],"category_scores_gemma":[0.000086957545,0.00019351384,0.00010867902,0.00011603247,0.00007655089,0.00027747086,0.00004831637,0.00019631788,0.0009408632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019609572,0.00010330917,0.0009623011,0.000012932857,0.00011336392,4.8473055e-7,0.001578585,0.0000014752776,0.9234944,0.0000028238758,0.070905454,0.0026287746],"study_design_scores_gemma":[0.0010456049,0.00016317623,0.0014310969,0.000017710785,0.000025591917,0.000013457226,0.00005180941,0.00004960619,0.9432927,0.0000024152005,0.05372312,0.00018372647],"about_ca_topic_score_codex":0.0002858792,"about_ca_topic_score_gemma":0.000009070732,"teacher_disagreement_score":0.019798284,"about_ca_system_score_codex":0.000058906455,"about_ca_system_score_gemma":0.000019388923,"threshold_uncertainty_score":0.99983704},"labels":[],"label_agreement":null},{"id":"W2113285011","doi":"10.1084/jem.20032246","title":"The Molecular Adapter Carma1 Controls Entry of IκB Kinase into the Central Immune Synapse","year":2004,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Immunological synapse; Biology; Cell biology; Lipid raft; Immune system; T cell; Signal transducing adaptor protein; Scaffold protein; T-cell receptor; Signal transduction; Immunology","score_opus":0.005629725141346293,"score_gpt":0.24734398060904703,"score_spread":0.24171425546770073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113285011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.85373884,0.13741325,0.00014485979,0.0074949902,0.000744235,0.00020251048,5.8529884e-7,0.000004243758,0.0002564567],"genre_scores_gemma":[0.9980601,0.0013283722,0.000009215198,0.00034688687,0.000101907535,0.000004437501,0.0000033287645,0.000009824624,0.00013594198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984394,0.0004708863,0.00066174,0.000059527207,0.00012229032,0.00024618438],"domain_scores_gemma":[0.9987629,0.00032538845,0.0004986132,0.0002941541,0.000096371026,0.000022549602],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010448755,0.00014244423,0.00029489695,0.0000472861,0.00027473617,0.0000061667542,0.0004698541,0.000072906,0.00014454256],"category_scores_gemma":[0.00015027651,0.000056314617,0.00013073334,0.000077864395,0.00080932793,0.00007734132,0.00006681747,0.00035061597,0.000015316718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027863823,0.00007210285,0.000010080588,0.0000027590606,0.00030819207,0.00001664919,0.00995707,0.000033928845,0.98366445,0.0017514458,0.00028734969,0.0011095948],"study_design_scores_gemma":[0.0040663173,0.0012631073,0.00043390857,0.0001437191,0.000120374716,0.00043887962,0.0124045545,0.0000017198439,0.9758605,0.00020093193,0.0050067483,0.00005926268],"about_ca_topic_score_codex":0.00027969916,"about_ca_topic_score_gemma":0.0000033035142,"teacher_disagreement_score":0.14432122,"about_ca_system_score_codex":0.00008180937,"about_ca_system_score_gemma":0.00007514117,"threshold_uncertainty_score":0.29820025},"labels":[],"label_agreement":null},{"id":"W2113603708","doi":"10.4049/jimmunol.175.9.5690","title":"Regulation of B7.1 Costimulatory Molecule Is Mediated by the IFN Regulatory Factor-7 through the Activation of JNK in Lipopolysaccharide-Stimulated Human Monocytic Cells","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa","funders":"","keywords":"Lipopolysaccharide; Cell biology; Chemistry; Immunology; Biology","score_opus":0.013646486727510634,"score_gpt":0.25032659255132167,"score_spread":0.23668010582381105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113603708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99176913,0.005506899,0.00024229044,0.0018271871,0.00023130489,0.00031738097,0.0000085105585,0.000010447127,0.000086847656],"genre_scores_gemma":[0.9990741,0.00035229416,0.000012952122,0.00019262893,0.00002833742,0.0000031656728,0.000017857701,0.000019206813,0.00029948325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969921,0.0012553417,0.0012432082,0.000116362055,0.00012446224,0.000268506],"domain_scores_gemma":[0.9965384,0.00099639,0.0016200624,0.00053762074,0.0002990891,0.00000841916],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010757777,0.00020179387,0.00045097343,0.00018376586,0.00021000416,0.00000667393,0.0006484587,0.00034297956,0.00030941717],"category_scores_gemma":[0.00018995699,0.0001116242,0.00014985494,0.00025199386,0.0006470823,0.00029125388,0.00008678491,0.00074410986,0.000027619364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010776016,0.00009923295,0.00007299777,0.00000763352,0.00036003656,2.9740332e-7,0.0046904054,0.00185441,0.9888043,0.00023191904,0.0013103263,0.0014908554],"study_design_scores_gemma":[0.001845116,0.00035226045,0.014236246,0.00007558365,0.00009132012,0.000045363133,0.0007651069,0.00020027354,0.98010147,0.00030297405,0.0018798612,0.000104432525],"about_ca_topic_score_codex":0.00031527612,"about_ca_topic_score_gemma":0.000014553989,"teacher_disagreement_score":0.014163248,"about_ca_system_score_codex":0.00014431922,"about_ca_system_score_gemma":0.00013203363,"threshold_uncertainty_score":0.45519027},"labels":[],"label_agreement":null},{"id":"W2113610600","doi":"10.1164/rccm.200807-1020oc","title":"Deleterious Role of TLR3 during Hyperoxia-induced Acute Lung Injury","year":2008,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"ARDS; Hyperoxia; Medicine; Inflammation; Lung; Immunology; TLR3; Diffuse alveolar damage; Cancer research; Innate immune system; Immune system; Internal medicine; Toll-like receptor; Acute respiratory distress","score_opus":0.008993775564822594,"score_gpt":0.27249600741908236,"score_spread":0.26350223185425975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113610600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857629,0.013474742,0.000032214906,0.0002965592,0.00020938214,0.000051915627,0.0000035329808,0.000009216165,0.000159535],"genre_scores_gemma":[0.9992451,0.00027017633,0.000032144897,0.0003066634,0.00011848759,0.0000018401523,0.0000018527159,0.0000110597275,0.000012692585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986949,0.00029553703,0.0005762551,0.000119379765,0.00009446299,0.00021945847],"domain_scores_gemma":[0.99899364,0.00019831436,0.00024683023,0.00014534233,0.0003523972,0.00006346464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024014764,0.00013758372,0.0005344725,0.00020574805,0.00015611532,0.0000025996724,0.00012994869,0.00008387859,0.0000839525],"category_scores_gemma":[0.00035908815,0.00010346214,0.000084924766,0.0001489034,0.0011590956,0.00012878365,0.000035510766,0.00034828112,0.000004089853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011244236,0.000023076856,0.003565112,0.00003439768,0.000109891735,0.00010811466,0.0021998268,1.542358e-7,0.9611433,0.00010103372,0.000070254726,0.031520404],"study_design_scores_gemma":[0.0023207825,0.011256364,0.03688376,0.00031765705,0.00032877718,0.0029046799,0.011896903,8.4713963e-7,0.9284334,0.00003272292,0.005389672,0.00023440049],"about_ca_topic_score_codex":0.000018446784,"about_ca_topic_score_gemma":5.16371e-7,"teacher_disagreement_score":0.033318646,"about_ca_system_score_codex":0.000030422294,"about_ca_system_score_gemma":0.00010023848,"threshold_uncertainty_score":0.4270736},"labels":[],"label_agreement":null},{"id":"W2113953901","doi":"10.1016/j.molimm.2009.09.001","title":"Role of alveolar epithelial early growth response-1 (Egr-1) in CD8+ T cell-mediated lung injury","year":2009,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Laurentian University","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; National Institutes of Health; Yale University","keywords":"Lung; CD8; Medicine; Chemistry; Internal medicine; Immunology; Immune system","score_opus":0.0021634146343931385,"score_gpt":0.1990570683323089,"score_spread":0.19689365369791575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2113953901","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877268,0.010168705,0.000111534806,0.00052225706,0.00025431643,0.00035007545,0.000019126344,0.00007683222,0.0007703448],"genre_scores_gemma":[0.9990213,0.00018647838,0.000069480826,0.00021999086,0.000009481543,0.000023138726,0.00011626525,0.000027087213,0.00032677484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967781,0.0014400341,0.0007261179,0.00037451202,0.00006711825,0.0006141404],"domain_scores_gemma":[0.99882513,0.00020891945,0.0002691422,0.000535714,0.00014162807,0.000019492449],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007039141,0.00029308267,0.00052741653,0.0006361718,0.000089131536,0.000010829153,0.00045923787,0.0006930414,0.00019552076],"category_scores_gemma":[0.0004013075,0.00030231406,0.0001812116,0.00043535657,0.00024175801,0.00015467705,0.000099025594,0.000597353,0.00044785283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006811154,0.00021287409,0.0007818621,0.000007599645,0.00011671345,0.000035634814,0.000852267,0.0000032829428,0.9879654,0.0010259624,0.000087627086,0.002099601],"study_design_scores_gemma":[0.002072524,0.001069794,0.0794636,0.000032636202,0.000031369007,0.000034256005,0.00012797682,0.000008448436,0.91384107,0.0006067264,0.0024498033,0.00026178625],"about_ca_topic_score_codex":0.00019723023,"about_ca_topic_score_gemma":0.000003315671,"teacher_disagreement_score":0.07868174,"about_ca_system_score_codex":0.00008616364,"about_ca_system_score_gemma":0.00015900208,"threshold_uncertainty_score":0.9999429},"labels":[],"label_agreement":null},{"id":"W2114113329","doi":"10.1002/jps.20267","title":"Down‐regulation of aryl hydrocarbon receptor–regulated genes by tumor necrosis factor‐α and lipopolysaccharide in murine hepatoma hepa 1c1c7 cells","year":2004,"lang":"en","type":"article","venue":"Journal of Pharmaceutical Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Aryl hydrocarbon receptor; Lipopolysaccharide; Tumor necrosis factor alpha; Chemistry; Gene; Aryl; Cell biology; Receptor; Microbiology; Biochemistry; Biology; Immunology; Transcription factor; Organic chemistry","score_opus":0.016529919482256086,"score_gpt":0.28100142384826265,"score_spread":0.2644715043660066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114113329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944931,0.0041789794,0.0000523688,0.00071756996,0.0003972946,0.00011326842,0.0000055367045,0.000008737299,0.000033088996],"genre_scores_gemma":[0.9988433,0.0008976949,0.00012052312,0.000063725915,0.000026222968,0.0000013052688,0.0000026524851,0.0000052652417,0.00003932565],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986413,0.00011419709,0.0006647708,0.0001645294,0.00013798183,0.00027718252],"domain_scores_gemma":[0.99927944,0.00013583622,0.00038624814,0.00006888957,0.00007970571,0.000049878116],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00076632167,0.00013823723,0.0003122501,0.0002512676,0.0001104908,0.0000255805,0.0002116825,0.000109386434,0.000261291],"category_scores_gemma":[0.00006962844,0.00010396471,0.00007814073,0.00029601066,0.00050741975,0.00039946375,0.00004966858,0.00023817475,0.000012627609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031768635,0.000113321716,0.004890298,0.000015744228,0.00003266327,0.0000032526948,0.00023225999,0.00011361813,0.98799545,0.00012422862,0.00005734374,0.0061041596],"study_design_scores_gemma":[0.0014791652,0.00033742178,0.009538106,0.00008522306,0.000026176287,0.000083167164,0.00008045435,0.00020257349,0.9864795,0.00031189137,0.0012613484,0.00011495234],"about_ca_topic_score_codex":0.00015361691,"about_ca_topic_score_gemma":0.0000080549025,"teacher_disagreement_score":0.0059892074,"about_ca_system_score_codex":0.000065944325,"about_ca_system_score_gemma":0.00011311097,"threshold_uncertainty_score":0.42395577},"labels":[],"label_agreement":null},{"id":"W2114347295","doi":"10.1016/s1471-4906(02)02298-6","title":"IRAK-4 as the central TIR signaling mediator in innate immunity","year":2002,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":217,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute","keywords":"Innate immune system; Signal transducing adaptor protein; Biology; Signal transduction; Proinflammatory cytokine; Cell biology; Receptor; Immunology; Mediator; Tumor necrosis factor alpha; Inflammation; Genetics","score_opus":0.03724098922774456,"score_gpt":0.3065067984287829,"score_spread":0.2692658092010384,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114347295","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.005007222,0.98935604,0.0000010371283,0.00020343074,0.00199117,0.0004427059,0.000021113596,0.00008272032,0.0028945724],"genre_scores_gemma":[0.003490478,0.99040926,0.000008129148,0.000058425867,0.00006781887,0.00023483462,0.00083505164,0.00007239403,0.0048236325],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99285454,0.0035940434,0.0016796344,0.0005653704,0.00006829183,0.001238146],"domain_scores_gemma":[0.99723405,0.0009944958,0.0006651385,0.0010496615,0.000037461698,0.000019209443],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0010204015,0.0007265338,0.0021338924,0.0016970269,0.00022185531,0.000030203864,0.0013220328,0.0018298109,0.0037844346],"category_scores_gemma":[0.00032090393,0.0005272822,0.0005182887,0.0014351575,0.00057824946,0.00015352816,0.00037973025,0.0030254181,0.0022815834],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013121698,0.0001688315,0.000022342652,0.00029992696,0.0004450146,0.00006222498,0.0013533353,0.0000020571658,0.0006273654,0.000712433,0.0004922959,0.99568295],"study_design_scores_gemma":[0.0012168866,0.00016382994,0.00034624423,0.0018142157,0.00019175664,0.00035047584,0.00019039547,0.0000012349154,0.0004913315,0.000082088176,0.99462736,0.0005241617],"about_ca_topic_score_codex":0.00058483187,"about_ca_topic_score_gemma":0.00016053669,"teacher_disagreement_score":0.9951588,"about_ca_system_score_codex":0.00042995234,"about_ca_system_score_gemma":0.00025045138,"threshold_uncertainty_score":0.9997179},"labels":[],"label_agreement":null},{"id":"W2114378787","doi":"10.1093/toxsci/kfr283","title":"The Dysregulation of the Monocyte/Macrophage Effector Function Induced by Isopropanol Is Mediated by the Defective Activation of Distinct Members of the AP-1 Family of Transcription Factors","year":2011,"lang":"en","type":"article","venue":"Toxicological Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"NFAT; Monocyte; Kinase; Tumor necrosis factor alpha; Cytokine; JUNB; p38 mitogen-activated protein kinases; Lipopolysaccharide; Cell biology; Signal transduction; Protein kinase A; Activator (genetics); Chemistry; Biology; Endocrinology; Receptor; Immunology; Transcription factor; Biochemistry","score_opus":0.034095988275938544,"score_gpt":0.23736627231658647,"score_spread":0.20327028404064792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114378787","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981069,0.0003222224,0.00009792822,0.0001505019,0.00031045728,0.0006104038,0.000025728406,0.000009964415,0.00036590634],"genre_scores_gemma":[0.9998446,0.000020436615,0.0000018265396,0.00002944762,0.000003731258,0.000020311094,0.000008737752,0.00000313256,0.000067773326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981151,0.0009817155,0.0004183465,0.00016357911,0.00015622673,0.00016499784],"domain_scores_gemma":[0.99824554,0.00077721936,0.00065552944,0.00020742645,0.00010643005,0.000007828102],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009423492,0.00012047655,0.00019863811,0.00003143509,0.0004205956,0.0000061050437,0.00046446593,0.0002051335,0.00009601014],"category_scores_gemma":[0.00045894715,0.000044374607,0.00014226687,0.0004968784,0.001506155,0.00013659718,0.00005526077,0.00017195914,0.000002015153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039578846,0.00008996762,0.0036929063,0.0000082873785,0.000047511352,4.905249e-9,0.0014338739,0.0000051801157,0.99157566,0.00032027054,0.00011827104,0.002312275],"study_design_scores_gemma":[0.00020083293,0.00046236077,0.36369732,0.000013141567,0.000029373132,2.3641545e-7,0.0006555715,0.000028739092,0.6346514,0.00014006112,0.000086400156,0.00003452477],"about_ca_topic_score_codex":0.00039197083,"about_ca_topic_score_gemma":0.000020456244,"teacher_disagreement_score":0.3600044,"about_ca_system_score_codex":0.000034906912,"about_ca_system_score_gemma":0.000052266038,"threshold_uncertainty_score":0.5549491},"labels":[],"label_agreement":null},{"id":"W2114820240","doi":"10.4049/jimmunol.1002320","title":"TLR1/TLR2 Agonist Induces Tumor Regression by Reciprocal Modulation of Effector and Regulatory T Cells","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":132,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Agonist; Effector; TLR2; Reciprocal; Regression; Modulation (music); Chemistry; Regression analysis; Cancer research; Cell biology; Internal medicine; Receptor; Biology; Medicine; Mathematics; Biochemistry; Physics; Statistics; Innate immune system; Philosophy","score_opus":0.011502858785796008,"score_gpt":0.2161074538884805,"score_spread":0.20460459510268447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114820240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98787856,0.010729228,0.00009093954,0.00011998494,0.0008467226,0.0001243354,0.0000033435913,0.000008985804,0.00019788153],"genre_scores_gemma":[0.9989945,0.0005723504,0.00005487706,0.000034242228,0.000029489272,0.0000017485911,0.0000067441183,0.000011755936,0.00029427203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981966,0.0008789244,0.000597826,0.00008963911,0.000048210433,0.00018880526],"domain_scores_gemma":[0.9984479,0.00025734346,0.0008940663,0.00023629631,0.00015214978,0.000012276751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010449352,0.00014268226,0.00035420276,0.00014786237,0.00015062334,0.000004288487,0.00026169102,0.00021974627,0.00012334443],"category_scores_gemma":[0.00011222154,0.00008685639,0.00007601457,0.0000851326,0.0004999741,0.00017288838,0.00007554214,0.000407104,0.00003299821],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033237399,0.00006813769,0.00012161163,0.000013563882,0.00018941828,0.0000024852236,0.0013888675,0.0000011770222,0.98697495,0.00010220482,0.0012066934,0.006607129],"study_design_scores_gemma":[0.0010576443,0.0009542344,0.035590675,0.00009512062,0.00007402016,0.00046333417,0.00038159505,0.00000249263,0.95901555,0.000249911,0.0020278841,0.00008756211],"about_ca_topic_score_codex":0.00004987825,"about_ca_topic_score_gemma":0.0000012008708,"teacher_disagreement_score":0.035469063,"about_ca_system_score_codex":0.000029332068,"about_ca_system_score_gemma":0.00006352599,"threshold_uncertainty_score":0.35419008},"labels":[],"label_agreement":null},{"id":"W2114913546","doi":"10.1128/jvi.79.15.9608-9617.2005","title":"Gene Expression and Antiviral Activity of Alpha/Beta Interferons and Interleukin-29 in Virus-Infected Human Myeloid Dendritic Cells","year":2005,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":184,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Medical Research Council; Academy of Finland","keywords":"Biology; Sendai virus; IRF3; Interferon; Influenza A virus; Virology; IRF7; Interferon regulatory factors; Virus; Molecular biology; Immunology; Innate immune system; Immune system","score_opus":0.00906829489009642,"score_gpt":0.2484098282795576,"score_spread":0.23934153338946118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114913546","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99765474,0.0016015142,0.000194421,0.00020170306,0.00019802421,0.00007705687,0.0000034951413,0.0000052960872,0.00006376478],"genre_scores_gemma":[0.99922395,0.00047469157,0.00013494509,0.000047304202,0.000039649247,0.0000013967018,0.0000030794024,0.000008823458,0.00006616334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986354,0.00049520395,0.0005101225,0.00012922332,0.000028531666,0.00020147854],"domain_scores_gemma":[0.9992588,0.00016591267,0.00039074203,0.00011325787,0.000053239608,0.000018052553],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041948436,0.00013141042,0.00042326437,0.0003483845,0.000057119934,0.0000074708455,0.000111188216,0.00024542637,0.00008341968],"category_scores_gemma":[0.000042669046,0.00011155323,0.000060457205,0.00005679584,0.0002497909,0.00026705072,0.000099659796,0.00043752076,0.000008888764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010262139,0.00015606012,0.0023909688,0.000014330966,0.000062184605,0.000013415004,0.00060073123,0.0000034185705,0.9872169,0.000019383167,0.00009576779,0.00840066],"study_design_scores_gemma":[0.002006487,0.0009631293,0.0573314,0.000067630375,0.000034324716,0.0003206715,0.000048282727,0.000008774059,0.93849343,0.00003530171,0.0006055532,0.00008503476],"about_ca_topic_score_codex":0.000021193668,"about_ca_topic_score_gemma":0.000073132476,"teacher_disagreement_score":0.054940432,"about_ca_system_score_codex":0.000032335825,"about_ca_system_score_gemma":0.000030689855,"threshold_uncertainty_score":0.45490086},"labels":[],"label_agreement":null},{"id":"W2114942352","doi":"10.1080/10739680490517712","title":"Pentastarch in a Balanced Solution Reduces Hepatic Leukocyte Recruitment in Early Sepsis","year":2004,"lang":"en","type":"article","venue":"Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Sepsis; Intravital microscopy; Saline; Microcirculation; Perforation; Perfusion; Adhesion; Medicine; Immunology; Chemistry; Internal medicine; Materials science","score_opus":0.032223292559217576,"score_gpt":0.2785425120212876,"score_spread":0.24631921946207003,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2114942352","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99704355,0.0010971711,0.00044288853,0.00050169206,0.00018372794,0.0006100356,0.0000016480935,0.00003319468,0.00008611506],"genre_scores_gemma":[0.99931705,0.00007284322,0.000128329,0.00007919639,0.000012193842,0.00009983879,0.0002106055,0.00001043692,0.00006950681],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884146,0.0002025512,0.0003950907,0.00023231607,0.000039654664,0.00028890918],"domain_scores_gemma":[0.99968004,0.0000348263,0.00010574017,0.00013936512,0.00003145923,0.000008577038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034071354,0.00012512361,0.00018284321,0.00030875453,0.00008079471,0.000016052802,0.000084098436,0.00016966551,0.000046160796],"category_scores_gemma":[0.0000327391,0.00013348756,0.000050746185,0.0002815972,0.00004306715,0.00024404567,0.00002581016,0.00018757697,0.0002647162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022016688,0.000081579834,0.013391426,0.000011943955,0.000016439504,0.0000039223573,0.0032214615,0.0007182941,0.97685796,0.00006238068,0.000021193104,0.005393231],"study_design_scores_gemma":[0.0024054977,0.00007193523,0.43066096,0.00011720232,0.000008058432,0.0000125822,0.00016179938,0.00004843524,0.5654598,0.00032029935,0.00059399806,0.00013944243],"about_ca_topic_score_codex":0.0012851638,"about_ca_topic_score_gemma":0.000323734,"teacher_disagreement_score":0.41726956,"about_ca_system_score_codex":0.0006071819,"about_ca_system_score_gemma":0.00007195483,"threshold_uncertainty_score":0.54434645},"labels":[],"label_agreement":null},{"id":"W2115291659","doi":"10.1053/j.gastro.2010.04.043","title":"Loss of Single Immunoglobulin Interlukin-1 Receptor-Related Molecule Leads to Enhanced Colonic Polyposis in Apcmin Mice","year":2010,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":57,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Case Western Reserve University","keywords":"Adenomatous polyposis coli; PI3K/AKT/mTOR pathway; Cancer research; Carcinogenesis; Biology; Proinflammatory cytokine; Receptor; Loss of heterozygosity; Immune system; Familial adenomatous polyposis; Signal transduction; Colorectal cancer; Immunology; Inflammation; Cancer; Cell biology; Gene; Genetics","score_opus":0.00438238520669602,"score_gpt":0.2150616766335574,"score_spread":0.2106792914268614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115291659","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99640256,0.00010331525,0.00024117994,0.001179443,0.0013922954,0.00039062457,0.000013934475,0.000041824034,0.00023484092],"genre_scores_gemma":[0.99869514,0.000010702015,0.00022675292,0.0003099191,0.000013885083,0.000055039345,0.0001046407,0.00002175158,0.0005621593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979586,0.0003841367,0.0007066939,0.00033692404,0.000037018603,0.000576653],"domain_scores_gemma":[0.9991713,0.000101705795,0.0002334326,0.00037109543,0.0000945477,0.00002791641],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003517133,0.00021505788,0.00044556693,0.00035829504,0.000050146104,0.0000071068557,0.00039516742,0.0003421828,0.0008338744],"category_scores_gemma":[0.00017774639,0.00022362816,0.000112700545,0.0002181607,0.00026188963,0.000085405896,0.0001576448,0.0005507144,0.00075029477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032735995,0.00024961223,0.0076684887,0.000010442806,0.00008213663,0.0000048996944,0.0008347096,0.0000124032385,0.9867229,0.00008051183,0.00040751975,0.0006527961],"study_design_scores_gemma":[0.0022499277,0.0018768118,0.019289553,0.000036841524,0.00001941579,0.000105615094,0.00009505954,0.0000019533184,0.9745893,0.000018906532,0.0015974477,0.000119167365],"about_ca_topic_score_codex":0.00014918976,"about_ca_topic_score_gemma":0.00053918373,"teacher_disagreement_score":0.012133581,"about_ca_system_score_codex":0.00006180826,"about_ca_system_score_gemma":0.000039399758,"threshold_uncertainty_score":0.96437716},"labels":[],"label_agreement":null},{"id":"W2115659051","doi":"10.1186/1750-9378-7-36","title":"Toll-like receptor 3 in Epstein-Barr virus-associated nasopharyngeal carcinomas: consistent expression and cytotoxic effects of its synthetic ligand poly(A:U) combined to a Smac-mimetic","year":2012,"lang":"en","type":"article","venue":"Infectious Agents and Cancer","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation Gustave Roussy; Institut Gustave-Roussy; Assistance publique-Hôpitaux de Paris; Institut National Du Cancer; Centre National de la Recherche Scientifique; University of Toronto","keywords":"Nasopharyngeal carcinoma; Cancer research; Clonogenic assay; Medicine; Cell culture; Cytotoxic T cell; MTT assay; Apoptosis; Biology; Immunology; In vitro; Internal medicine; Radiation therapy","score_opus":0.008890965067888943,"score_gpt":0.23855911759584653,"score_spread":0.22966815252795758,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115659051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9773579,0.02082304,0.0000040125115,0.00005856046,0.000942875,0.0006437442,0.000017916662,0.000029171671,0.00012276556],"genre_scores_gemma":[0.9978211,0.0012871358,0.0000026167436,0.00019523253,0.00002220016,0.00015576938,0.00001567383,0.000019010247,0.00048128926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987232,0.00029605927,0.00033170637,0.00022395037,0.000052839066,0.0003722582],"domain_scores_gemma":[0.9994046,0.00018204667,0.00015337855,0.00014469029,0.0000528947,0.00006235088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024204329,0.00020279079,0.00039125726,0.00019159986,0.00013659766,0.000014712104,0.000062019884,0.00021528434,0.00013585018],"category_scores_gemma":[0.000114365415,0.00017725652,0.00005313549,0.00015231576,0.00007715905,0.00012068615,0.00008610466,0.00016158979,0.00003051985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042121948,0.0002079054,0.04695173,0.00014005817,0.00011019272,0.0000029553623,0.0018384146,0.0000020536022,0.9457517,0.000017160197,0.0004394758,0.004117115],"study_design_scores_gemma":[0.0032656773,0.00052009965,0.15834458,0.00048582652,0.00007163934,0.000018141158,0.0000730291,0.0000057893285,0.8338473,0.000005787764,0.0031418907,0.00022024961],"about_ca_topic_score_codex":0.00044344526,"about_ca_topic_score_gemma":0.000093619994,"teacher_disagreement_score":0.111904435,"about_ca_system_score_codex":0.00010492464,"about_ca_system_score_gemma":0.000043254833,"threshold_uncertainty_score":0.72283113},"labels":[],"label_agreement":null},{"id":"W2115904774","doi":"10.4049/jimmunol.168.9.4650","title":"Profound Differences in Leukocyte-Endothelial Cell Responses to Lipopolysaccharide Versus Lipoteichoic Acid","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipoteichoic acid; Lipopolysaccharide; Microbiology; Biology; Immunology; Cell biology; Bacteria; Genetics; Staphylococcus aureus","score_opus":0.02866900332793851,"score_gpt":0.24596515815861444,"score_spread":0.21729615483067594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2115904774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9799768,0.014996943,0.00007098701,0.0019799226,0.00220946,0.00020573975,0.0000028800512,0.000018150782,0.00053913204],"genre_scores_gemma":[0.9940239,0.001874681,0.000043036707,0.00012902741,0.000094571355,0.000007962705,0.0000013685531,0.000016771839,0.0038086602],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99719644,0.00134744,0.00077285175,0.0001387783,0.00007780995,0.00046666665],"domain_scores_gemma":[0.99806786,0.0009663485,0.0004543368,0.0003575843,0.00013188961,0.000021968477],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010305372,0.00021519545,0.0004616533,0.0005017282,0.00019785059,0.000022156692,0.0007431244,0.00025222823,0.00080160744],"category_scores_gemma":[0.0006245493,0.0001428066,0.00012316354,0.00022022428,0.00026056738,0.00021191356,0.0001280371,0.00078931084,0.0010395881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012837808,0.0001317896,0.00037570478,0.000004846709,0.00017286694,0.000019982062,0.0027131801,0.000005786183,0.9766821,0.00013218651,0.0007563815,0.0061673434],"study_design_scores_gemma":[0.005143183,0.0027661866,0.008933262,0.000063916974,0.0000837596,0.0005698657,0.001531039,0.0000050394256,0.96524906,0.000090977745,0.015339067,0.00022461217],"about_ca_topic_score_codex":0.00009366122,"about_ca_topic_score_gemma":0.000038671136,"teacher_disagreement_score":0.014582686,"about_ca_system_score_codex":0.00012070287,"about_ca_system_score_gemma":0.000095616626,"threshold_uncertainty_score":0.9997382},"labels":[],"label_agreement":null},{"id":"W2116227836","doi":"10.1128/jvi.05996-11","title":"CD8 <sup>+</sup> T Cell Immunodominance in Lymphocytic Choriomeningitis Virus Infection Is Modified in the Presence of Toll-Like Receptor Agonists","year":2011,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Immunodominance; Lymphocytic choriomeningitis; Biology; Epitope; Virology; Subdominant; Toll-like receptor; Cytotoxic T cell; Antigen; CD8; TLR2; TLR3; Antigen presentation; T cell; Immunology; Immune system; Innate immune system","score_opus":0.01616934735493562,"score_gpt":0.22964147344384556,"score_spread":0.21347212608890995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116227836","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957655,0.002553555,0.00015446272,0.00011966126,0.0005251562,0.00017395403,0.0000034763952,0.000004487528,0.00069972815],"genre_scores_gemma":[0.9972312,0.002301576,0.00007147946,0.00012070943,0.000027563423,0.000012577838,0.00000424083,0.000010198752,0.00022049663],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977674,0.00083905755,0.00088711025,0.00014623687,0.000061642684,0.00029854663],"domain_scores_gemma":[0.9986426,0.00033671272,0.0006659621,0.00025229616,0.000091282775,0.000011138182],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011453837,0.00015233674,0.00043301185,0.00042848848,0.0000719678,0.000007137727,0.0003555872,0.00032384112,0.00027698645],"category_scores_gemma":[0.00017407577,0.00011706689,0.00012643104,0.00026532414,0.00020831855,0.00025225486,0.000051931787,0.00046710199,0.00007501905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051903035,0.00038189703,0.0041284803,0.000041020026,0.00008959255,0.000055093064,0.017581701,0.0009441657,0.96734816,0.00015989934,0.0008877125,0.0031919805],"study_design_scores_gemma":[0.0084069595,0.002747314,0.06958873,0.00019430302,0.00007569001,0.0012243836,0.00084388646,0.00044110144,0.9012122,0.0005040681,0.01445784,0.0003035032],"about_ca_topic_score_codex":0.0010253954,"about_ca_topic_score_gemma":0.00006610498,"teacher_disagreement_score":0.066135935,"about_ca_system_score_codex":0.00014905176,"about_ca_system_score_gemma":0.0001878894,"threshold_uncertainty_score":0.47738492},"labels":[],"label_agreement":null},{"id":"W2116666774","doi":"10.1189/jlb.0908559","title":"Signaling through TLR7 enhances the immunosuppressive activity of murine CD4+CD25+ T regulatory cells","year":2009,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"TLR7; IL-2 receptor; Biology; FOXP3; T cell; Imiquimod; Interleukin 21; CD28; Cell biology; Molecular biology; Immune system; Immunology; Toll-like receptor; Innate immune system","score_opus":0.011596372806146915,"score_gpt":0.25933209110473493,"score_spread":0.247735718298588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116666774","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880405,0.009065275,0.00053101743,0.00078095484,0.0010448033,0.00012245154,0.000003774385,0.000010889421,0.00040033986],"genre_scores_gemma":[0.9981994,0.0009802303,0.00014065002,0.0001649313,0.00015377063,0.0000015509605,0.000006034156,0.0000076784245,0.00034576302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998042,0.0007323652,0.00073462055,0.00014372732,0.000054515454,0.00029278384],"domain_scores_gemma":[0.9976693,0.0004590262,0.0013135606,0.0002926098,0.00025189074,0.000013640039],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078468025,0.0001853741,0.0005369395,0.00011971977,0.00016323366,0.000008896765,0.00044256967,0.00030889086,0.00020758282],"category_scores_gemma":[0.00013109774,0.000114491835,0.00026543098,0.000121362835,0.00036211297,0.00025794757,0.000051927957,0.0005101509,0.00003424233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015668242,0.00009520921,0.00003754978,0.000008474036,0.00024393252,0.0000065233685,0.0006579466,0.00004175144,0.9874617,0.0005239395,0.00075032056,0.008605853],"study_design_scores_gemma":[0.0010533442,0.0011321658,0.004387637,0.00006558477,0.00006868801,0.00020617804,0.00018256882,0.0000020566824,0.97124547,0.00080160523,0.020738052,0.000116674964],"about_ca_topic_score_codex":0.000022655373,"about_ca_topic_score_gemma":0.0000011852076,"teacher_disagreement_score":0.019987732,"about_ca_system_score_codex":0.000058249945,"about_ca_system_score_gemma":0.00017989866,"threshold_uncertainty_score":0.46688417},"labels":[],"label_agreement":null},{"id":"W2116793364","doi":"10.1152/ajpendo.00084.2010","title":"T cells from burn-injured mice demonstrate a loss of sensitivity to glucocorticoids","year":2010,"lang":"en","type":"article","venue":"American Journal of Physiology-Endocrinology and Metabolism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"","keywords":"Glucocorticoid; MAPK/ERK pathway; IL-2 receptor; T cell; Endocrinology; Internal medicine; Immune system; Glucocorticoid receptor; Medicine; p38 mitogen-activated protein kinases; Kinase; Biology; Immunology; Cell biology","score_opus":0.004246736734227056,"score_gpt":0.2228179937967167,"score_spread":0.21857125706248964,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2116793364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962706,0.0011052883,0.000129341,0.00062605506,0.0016224848,0.00013078509,0.000045051926,0.000017984537,0.000052412117],"genre_scores_gemma":[0.9976608,0.000546983,0.001199785,0.00033937016,0.00016725225,0.000004724711,0.000012420625,0.000015385587,0.000053281514],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997634,0.0008117544,0.0007444534,0.00028176393,0.000050646428,0.00047740302],"domain_scores_gemma":[0.99782395,0.0005404404,0.0008926588,0.00030311762,0.00036398883,0.00007585265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037872046,0.0002553008,0.0010395419,0.0002951354,0.0001249197,0.000006800232,0.00024483033,0.0001821747,0.00014662302],"category_scores_gemma":[0.0002578782,0.00021015514,0.00017529703,0.00025142086,0.0014579935,0.00015586018,0.00011844589,0.00091108977,0.00007741104],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015293434,0.000108637076,0.00051442056,0.0000051533307,0.00043072522,0.00002223565,0.00048645562,0.000004764256,0.9496121,0.00055079866,0.00017889551,0.046556495],"study_design_scores_gemma":[0.0011737002,0.0004213975,0.23328851,0.000013808091,0.00017894094,0.00054383156,0.00038874382,0.0000013759283,0.75206286,0.0004544245,0.011309768,0.00016266225],"about_ca_topic_score_codex":0.0003309224,"about_ca_topic_score_gemma":0.000032597363,"teacher_disagreement_score":0.2327741,"about_ca_system_score_codex":0.000007700481,"about_ca_system_score_gemma":0.0001420694,"threshold_uncertainty_score":0.8569878},"labels":[],"label_agreement":null},{"id":"W2117371526","doi":"10.1189/jlb.1012540","title":"Crosstalk between neutrophils and dendritic cells: a context-dependent process","year":2012,"lang":"en","type":"review","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Crosstalk; Biology; Immunology; Immune system; Dendritic cell; Immunity; Cell biology","score_opus":0.05080049650440907,"score_gpt":0.3344199684993975,"score_spread":0.2836194719949884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117371526","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0071955263,0.9907091,0.00004714742,0.000031565985,0.0015402137,0.00035103774,0.000036289573,0.000016151134,0.000072926334],"genre_scores_gemma":[0.033388168,0.9655302,0.000013306212,0.00002959152,0.0005164081,0.000014974635,0.00007503598,0.000041465028,0.00039084814],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964812,0.0010351104,0.00159366,0.00027074356,0.000053738688,0.0005655705],"domain_scores_gemma":[0.99710065,0.00062219513,0.0017142346,0.00027193903,0.00021969734,0.00007125985],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010424764,0.00047440248,0.0026282894,0.00046836789,0.00015801314,0.00003401802,0.00046159467,0.0012411213,0.0001469949],"category_scores_gemma":[0.00010910321,0.00033302803,0.00059525,0.000121389145,0.000370978,0.00021604176,0.00012268798,0.001192458,0.00024201442],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015290879,0.000060758248,0.00004867156,0.002768735,0.0016953546,0.000031891024,0.00020636538,1.271712e-7,0.0026179668,0.00012223049,0.0001275882,0.9921674],"study_design_scores_gemma":[0.0009576864,0.0005663941,0.000028168322,0.0016795249,0.0020845623,0.0026349537,0.00007594162,2.663222e-8,0.003059039,0.00006403633,0.9885237,0.00032593723],"about_ca_topic_score_codex":0.000010892195,"about_ca_topic_score_gemma":0.0000015565589,"teacher_disagreement_score":0.9918415,"about_ca_system_score_codex":0.00014555038,"about_ca_system_score_gemma":0.0005121686,"threshold_uncertainty_score":0.9999122},"labels":[],"label_agreement":null},{"id":"W2117446946","doi":"10.1378/chest.124.3.1103","title":"Genetic Polymorphisms in Sepsis and Septic Shock","year":2003,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":216,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Sepsis; Septic shock; Candidate gene; Immunology; Gene; Medicine; Genetics; Genetic association; Biology; Genotype; Single-nucleotide polymorphism","score_opus":0.009631235762605444,"score_gpt":0.21840443142835125,"score_spread":0.20877319566574581,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117446946","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98993874,0.007934349,0.0001514595,0.00022699975,0.00027763913,0.000046212772,2.8696834e-7,0.000007547529,0.001416791],"genre_scores_gemma":[0.99777544,0.00045077613,0.00024472122,0.00009445359,0.000019662099,0.0000022817414,0.0000013465807,0.000007642648,0.0014036772],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992839,0.00019028346,0.00021568245,0.00008604739,0.000018191857,0.00020586274],"domain_scores_gemma":[0.9997659,0.00004775919,0.000065567074,0.00008249715,0.000019869614,0.000018434313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026162766,0.0000824339,0.00012251323,0.00012779959,0.000109507426,0.00002192433,0.00005914931,0.00011539755,0.0006348204],"category_scores_gemma":[0.000091469534,0.000071442104,0.000035079873,0.000075758726,0.00006233282,0.000081961996,0.000011983449,0.00026791982,0.00019621708],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010572265,0.000069839865,0.05296869,0.000015278765,0.0000802543,0.00007355823,0.0012965166,0.00001592795,0.9283234,0.00047864259,0.0013433759,0.015228808],"study_design_scores_gemma":[0.0027302585,0.00020608961,0.6729693,0.00008166018,0.00004178053,0.005800533,0.00044092548,0.000010130129,0.21304053,0.0013018624,0.10308765,0.00028929868],"about_ca_topic_score_codex":0.000005393834,"about_ca_topic_score_gemma":0.0000036396732,"teacher_disagreement_score":0.71528286,"about_ca_system_score_codex":0.000032768727,"about_ca_system_score_gemma":0.00005682854,"threshold_uncertainty_score":0.6950838},"labels":[],"label_agreement":null},{"id":"W2117475938","doi":"10.1128/iai.01280-12","title":"Toll-Like Receptor 4/Stem Cell Antigen 1 Signaling Promotes Hematopoietic Precursor Cell Commitment to Granulocyte Development during the Granulopoietic Response to Escherichia coli Bacteremia","year":2013,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health","keywords":"Biology; Bone marrow; Haematopoiesis; Stem cell; Myeloid; Progenitor cell; Downregulation and upregulation; Immunology; Molecular biology; Granulopoiesis; Hematopoietic stem cell; Cancer research; Cell biology","score_opus":0.008879455793590093,"score_gpt":0.21052434535968342,"score_spread":0.20164488956609333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117475938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961002,0.00041796392,0.0002190921,0.000502525,0.0006119964,0.0017496435,0.0000038250005,0.00011705388,0.0002777339],"genre_scores_gemma":[0.9942339,0.00007396488,0.00021553971,0.00025789312,0.000018352608,0.00035572876,0.000028217926,0.00002929043,0.00478713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973599,0.0012258488,0.0005496688,0.00031297054,0.00008189945,0.00046975756],"domain_scores_gemma":[0.998853,0.0002657385,0.00016956826,0.00046022006,0.00016767021,0.000083752886],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00096466206,0.00032189372,0.00031924187,0.00021039393,0.0011749042,0.00013498403,0.00022857024,0.00021436122,0.00071732653],"category_scores_gemma":[0.000047918267,0.00025409154,0.000086201166,0.00032154407,0.000089106135,0.0002104197,0.0002272781,0.00044681862,0.002436757],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010168804,0.0001665923,0.0019108012,0.00008970697,0.000055911336,6.218795e-7,0.009239662,0.000015033785,0.9843735,0.0000025210886,0.00074032845,0.002388444],"study_design_scores_gemma":[0.00090094964,0.00032778023,0.12511651,0.00009768322,0.00001938098,0.000018397232,0.0007438168,0.0000030370552,0.82994694,0.000005190946,0.04251844,0.00030187948],"about_ca_topic_score_codex":0.000322335,"about_ca_topic_score_gemma":0.000024941317,"teacher_disagreement_score":0.15442657,"about_ca_system_score_codex":0.0001782507,"about_ca_system_score_gemma":0.000108810025,"threshold_uncertainty_score":0.9999911},"labels":[],"label_agreement":null},{"id":"W2117589198","doi":"10.1152/ajpgi.00014.2004","title":"Proinflammatory properties of IL-4 in the intestinal microenvironment","year":2004,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Proinflammatory cytokine; Colitis; Cytokine; Immunology; Tumor necrosis factor alpha; Immune system; T helper cell; Biology; T cell; Inflammation; Medicine","score_opus":0.007613622077778177,"score_gpt":0.19068867311587248,"score_spread":0.1830750510380943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117589198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99802995,0.001196112,0.000052789812,0.00045200426,0.00007435597,0.00016232414,0.000002235915,0.000006774261,0.00002343895],"genre_scores_gemma":[0.99883634,0.00017422647,0.0007313896,0.00015758796,0.00006118703,0.000009359198,0.000005372031,0.000010603021,0.00001395433],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99809337,0.0005994217,0.00068949827,0.00021068942,0.00005891479,0.00034809983],"domain_scores_gemma":[0.9986476,0.00019320198,0.000822724,0.00020175206,0.000110604735,0.000024160685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044918727,0.00022625951,0.00058238587,0.00017984875,0.00008535124,0.000004988245,0.00037022796,0.000047869242,0.000028216818],"category_scores_gemma":[0.00013446425,0.00014042866,0.00013681095,0.00015213096,0.0019962364,0.00013415901,0.000097270306,0.0005395515,0.000023292041],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001617098,0.00024344008,0.00071496953,0.000044059252,0.000055108656,0.000014173764,0.0012349264,0.00015575782,0.9935119,0.0005986029,0.000026252395,0.0017836712],"study_design_scores_gemma":[0.0025724114,0.00893333,0.5734823,0.00074200094,0.000085870146,0.008551168,0.005096374,0.00000925797,0.3983183,0.0014333044,0.0004976643,0.0002780463],"about_ca_topic_score_codex":0.0001404334,"about_ca_topic_score_gemma":0.0000057275956,"teacher_disagreement_score":0.5951936,"about_ca_system_score_codex":0.000043086166,"about_ca_system_score_gemma":0.00012874386,"threshold_uncertainty_score":0.73552155},"labels":[],"label_agreement":null},{"id":"W2117943649","doi":"10.1128/cvi.00310-09","title":"Receptor Recognition of and Immune Intracellular Pathways for <i>Veillonella parvula</i> Lipopolysaccharide","year":2009,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TLR4; Biology; TLR2; Lipopolysaccharide; Cytokine; Tumor necrosis factor alpha; Microbiology; Immune system; Immunology","score_opus":0.029066066603272853,"score_gpt":0.28096055450357105,"score_spread":0.25189448790029817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2117943649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9807338,0.01616054,0.00034006042,0.0015489792,0.0006200044,0.0004153326,0.000023008222,0.00005254342,0.000105731546],"genre_scores_gemma":[0.99228936,0.0064515364,0.00038093782,0.00022446184,0.00008226565,0.000023422726,0.00021994075,0.000013871546,0.00031421],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979054,0.0003081573,0.0010853293,0.00036128718,0.000020132531,0.00031972563],"domain_scores_gemma":[0.99849004,0.00069717504,0.00035831291,0.00027892215,0.00014922499,0.000026307236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008949168,0.0002077342,0.0006716523,0.0001139615,0.00015336723,0.000010296441,0.00013657467,0.0004889197,0.00011187938],"category_scores_gemma":[0.0006460135,0.00017903178,0.00015337903,0.000070377784,0.00022390625,0.000118542506,0.00007020232,0.0003414736,0.00006408987],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019805448,0.00015749417,0.00042541395,0.000018845865,0.00014374187,7.642642e-7,0.00008784709,1.0510541e-7,0.7062382,0.001799419,0.00033853293,0.28880906],"study_design_scores_gemma":[0.007888565,0.004422819,0.037805207,0.000103620136,0.00016308544,0.00011457551,0.00023420004,0.000026046455,0.9174712,0.009442218,0.021935897,0.00039258902],"about_ca_topic_score_codex":0.00002073901,"about_ca_topic_score_gemma":0.0000017909734,"teacher_disagreement_score":0.28841648,"about_ca_system_score_codex":0.000006806936,"about_ca_system_score_gemma":0.000038136575,"threshold_uncertainty_score":0.7300704},"labels":[],"label_agreement":null},{"id":"W2118048714","doi":"10.1016/j.chembiol.2015.07.017","title":"Inflammatory Signaling by NOD-RIPK2 Is Inhibited by Clinically Relevant Type II Kinase Inhibitors","year":2015,"lang":"en","type":"article","venue":"Chemistry & Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Ministero dello Sviluppo Economico; Danmarks Frie Forskningsfond; Ontario Ministry of Economic Development and Innovation; Ontario Genomics Institute; National Institute of General Medical Sciences; Diamond Light Source; Wellcome Trust; Ludwig Institute for Cancer Research; Deutsche Forschungsgemeinschaft; GlaxoSmithKline; Ontario Genomics; Crohn's and Colitis Foundation of America; Genome Canada; Leona M. and Harry B. Helmsley Charitable Trust; Pfizer; Eli Lilly and Company","keywords":"Ponatinib; Pharmacology; Inflammasome; Autophosphorylation; Chemistry; Signal transduction; Protein kinase A; Kinase; Cancer research; Inflammation; Cell biology; Biology; Tyrosine kinase; Dasatinib; Immunology","score_opus":0.01301276663784415,"score_gpt":0.25353929677055703,"score_spread":0.24052653013271288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118048714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99031144,0.0068487274,0.0000118264325,0.00073893263,0.0005243482,0.00015336115,0.000036632264,0.00009486494,0.0012798614],"genre_scores_gemma":[0.9936622,0.00018790174,0.000026736068,0.0004705905,0.000089133195,0.000020952368,0.001283341,0.000026238564,0.0042329296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978759,0.00021974291,0.00086928345,0.00048101606,0.000040757393,0.0005132813],"domain_scores_gemma":[0.99891806,0.00016555,0.0002917456,0.00038257844,0.00017537875,0.00006667994],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00073226495,0.00028131332,0.00041808528,0.000059524893,0.00012151123,0.00001077829,0.0002832521,0.0010091441,0.00060221023],"category_scores_gemma":[0.0007153763,0.00026478476,0.00009520157,0.0002062342,0.00034440137,0.00008907467,0.00018881774,0.00059685303,0.0004846224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007005282,0.00010788144,0.0024057718,0.000020121408,0.000051897052,0.000006342068,0.00033116963,9.039707e-7,0.915678,0.000006928301,0.07923489,0.0014555696],"study_design_scores_gemma":[0.0014406192,0.00024081455,0.00002931182,0.000040091898,0.000014177428,0.000021341017,0.00016592594,0.0000050868925,0.75994915,0.00007318738,0.23777856,0.0002417004],"about_ca_topic_score_codex":0.00003972772,"about_ca_topic_score_gemma":8.983222e-7,"teacher_disagreement_score":0.15854368,"about_ca_system_score_codex":0.00011100614,"about_ca_system_score_gemma":0.00022302529,"threshold_uncertainty_score":0.99998045},"labels":[],"label_agreement":null},{"id":"W2118288869","doi":"10.1093/bja/aeu225","title":"Pulmonary overexpression of inhibitor κBα decreases the severity of ventilator-induced lung injury in a rat model","year":2014,"lang":"en","type":"article","venue":"British Journal of Anaesthesia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"European Research Council; Health Research Board","keywords":"Lung; Medicine; Pulmonary Injury; Internal medicine; Pulmonary fibrosis","score_opus":0.007422169608773606,"score_gpt":0.22724664288246332,"score_spread":0.21982447327368973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118288869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99703866,0.0025315227,0.00006166578,0.0000699772,0.000096013224,0.00009828833,0.0000029916425,0.000003872759,0.00009702977],"genre_scores_gemma":[0.999335,0.00048457895,0.000061957166,0.000034538687,0.000025021747,0.0000019686565,0.000004730807,0.00000964889,0.000042543907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985585,0.0004555416,0.00066577946,0.000087757566,0.00008019732,0.00015218115],"domain_scores_gemma":[0.9990141,0.000072515184,0.0005975058,0.0001512605,0.00014704675,0.000017601604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084653846,0.00009502944,0.00033718764,0.00012621276,0.00006810326,0.000009946669,0.00022864017,0.00016011133,0.000028155766],"category_scores_gemma":[0.00020997578,0.000081782455,0.00015509188,0.000112280206,0.00009846316,0.00023113513,0.000042065643,0.00029349458,0.0000021893438],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001190079,0.00021732501,0.0035441136,0.00004186678,0.000036797388,0.000028203578,0.00017314816,0.00006934591,0.9186201,0.00009840505,0.00086894946,0.07511166],"study_design_scores_gemma":[0.0010599805,0.00040873128,0.06188779,0.0017237146,0.000047904385,0.0018791535,0.00013884141,0.0006285247,0.9309452,0.00044988617,0.0006895002,0.00014074899],"about_ca_topic_score_codex":0.0001265406,"about_ca_topic_score_gemma":0.000005348321,"teacher_disagreement_score":0.07497091,"about_ca_system_score_codex":0.000026715978,"about_ca_system_score_gemma":0.00012808079,"threshold_uncertainty_score":0.3334992},"labels":[],"label_agreement":null},{"id":"W2118766364","doi":"10.1089/jmf.2007.401","title":"Natural Killer Cell Activation and Modulation of Chemokine Receptor Profile <i>In Vitro</i> by an Extract from the Cyanophyta <i>Aphanizomenon flos-aquae</i>","year":2007,"lang":"en","type":"article","venue":"Journal of Medicinal Food","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Aphanizomenon; In vitro; Chemokine receptor; Biology; Flos; Chemokine; Receptor; Microbiology; Chemistry; Cell biology; Biochemistry; Cyanobacteria; Genetics; Anabaena; Bacteria","score_opus":0.0064158352220791545,"score_gpt":0.22191086282204886,"score_spread":0.21549502759996972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2118766364","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99383974,0.0040565794,0.00043759562,0.00068630924,0.0007242132,0.00015136335,0.000007418807,0.0000046490995,0.000092122245],"genre_scores_gemma":[0.99910325,0.00014016591,0.00020855064,0.00013830779,0.00015707115,0.0000011728395,0.00012148258,0.0000098413775,0.00012017596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99884087,0.00018047256,0.00058538205,0.00010720411,0.00011934925,0.00016674995],"domain_scores_gemma":[0.99884355,0.00031341013,0.0005778308,0.00011862032,0.00012478764,0.000021776636],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001037626,0.0001182306,0.0002558602,0.000108610526,0.000061176914,0.0000070932306,0.00013490001,0.00015751552,0.000080075886],"category_scores_gemma":[0.00010032114,0.00007777532,0.000049018643,0.00013381093,0.00007614033,0.00033535418,0.000017215823,0.00043260964,0.0000041794347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033419074,0.00012367255,0.00026244367,0.00001053149,0.000046409237,0.00000124107,0.0008626876,0.0000019841727,0.97313553,0.000007173362,0.0013987303,0.020807682],"study_design_scores_gemma":[0.0024691466,0.00094696094,0.012459849,0.00008939196,0.000031012605,0.000031403102,0.0006683374,0.000022589013,0.97862875,0.000059879603,0.0045145857,0.000078075354],"about_ca_topic_score_codex":0.000024714238,"about_ca_topic_score_gemma":0.0000048916113,"teacher_disagreement_score":0.020729607,"about_ca_system_score_codex":0.000048580172,"about_ca_system_score_gemma":0.000046368117,"threshold_uncertainty_score":0.31715858},"labels":[],"label_agreement":null},{"id":"W2119167266","doi":"10.1172/jci32567","title":"TNF-α is critical for antitumor but not antiviral T cell immunity in mice","year":2007,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":222,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of Toronto; Ontario Institute for Cancer Research","funders":"National Cancer Institute; University of Toronto; Terry Fox Foundation; Campbell Family Institute for Breast Cancer Research","keywords":"Tumor necrosis factor alpha; Immunology; Immune system; Immunity; Inflammation; TLR2; Cytokine; Priming (agriculture); T cell; Acquired immune system; Medicine; Biology; Cancer research; Innate immune system","score_opus":0.06735948535393264,"score_gpt":0.38258413756802007,"score_spread":0.3152246522140874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119167266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938386,0.0003558705,0.0021394857,0.0019572699,0.0012019511,0.00014897539,0.000005948656,0.000008686876,0.00034318023],"genre_scores_gemma":[0.9965511,0.00008724998,0.0017033464,0.0010596465,0.00021191432,0.0000015029135,0.000016071444,0.0000102278555,0.00035894322],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99711835,0.0004880207,0.001928084,0.00013045134,0.00007102498,0.00026404604],"domain_scores_gemma":[0.9957255,0.0030209469,0.00070623116,0.00012973364,0.00037449098,0.000043083273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0066175503,0.00011663589,0.00043887435,0.00020647059,0.00009756744,0.00001892756,0.00019199454,0.00037084462,0.00004289343],"category_scores_gemma":[0.0050628493,0.00010188544,0.00024777456,0.0001366333,0.00035507523,0.00039681667,0.000029199686,0.00074280245,0.00007177969],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024701415,0.00025014195,0.013661271,0.000051387426,0.00004162843,0.000014716594,0.00032585498,0.0000021105209,0.9725644,0.0010372924,0.0021695488,0.0074114786],"study_design_scores_gemma":[0.002362065,0.00065740023,0.14546236,0.000098870514,0.000045108452,0.00003908577,0.00024918607,0.00003121475,0.84516174,0.0013686917,0.0044103283,0.00011394795],"about_ca_topic_score_codex":0.000026486729,"about_ca_topic_score_gemma":0.000008559936,"teacher_disagreement_score":0.1318011,"about_ca_system_score_codex":0.000033038083,"about_ca_system_score_gemma":0.00022622077,"threshold_uncertainty_score":0.6061069},"labels":[],"label_agreement":null},{"id":"W2119229144","doi":"10.4049/jimmunol.1102395","title":"Alcohol Impairs the Myeloid Proliferative Response to Bacteremia in Mice by Inhibiting the Stem Cell Antigen-1/ERK Pathway","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"National Institute on Alcohol Abuse and Alcoholism","keywords":"MAPK/ERK pathway; Myeloid; Haematopoiesis; Bacteremia; Cancer research; Stem cell; Cell growth; Progenitor cell; Downregulation and upregulation; Cell; Immunology; Biology; Cell biology; Signal transduction; Microbiology; Biochemistry","score_opus":0.0110638504565779,"score_gpt":0.2312672718426209,"score_spread":0.22020342138604299,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119229144","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9757187,0.016128438,0.000076658755,0.006621882,0.0007327642,0.00047811898,0.0000068098598,0.000013004073,0.00022364751],"genre_scores_gemma":[0.99717253,0.0004714938,0.000013457105,0.0006570097,0.00008445539,0.000014224512,0.000004318133,0.000022428869,0.0015600765],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9927907,0.005479856,0.0008758507,0.00011489602,0.00008062848,0.00065804407],"domain_scores_gemma":[0.99668115,0.0020679028,0.00071271026,0.0003366684,0.00017701378,0.000024556099],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0069478382,0.00024301084,0.0003776756,0.00018538172,0.0004924575,0.000027075821,0.0008129042,0.00025582642,0.00008457036],"category_scores_gemma":[0.00029588467,0.000114405026,0.0001348043,0.0003162847,0.00033144315,0.00028916416,0.00020724232,0.0012494697,0.0003208796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0072174133,0.00008623192,0.00058003917,0.0000034374777,0.00016736519,0.0000032881317,0.018938398,0.000012951248,0.96701634,0.00006285537,0.0021767593,0.003734928],"study_design_scores_gemma":[0.001311185,0.000570521,0.02006431,0.00006171016,0.00003810766,0.00093336,0.011420635,0.000001343699,0.9333486,0.000016078975,0.032083634,0.00015054812],"about_ca_topic_score_codex":0.0000459412,"about_ca_topic_score_gemma":0.0000107321885,"teacher_disagreement_score":0.033667766,"about_ca_system_score_codex":0.00014048653,"about_ca_system_score_gemma":0.0002535799,"threshold_uncertainty_score":0.54283935},"labels":[],"label_agreement":null},{"id":"W2119605300","doi":"10.4049/jimmunol.178.11.7344","title":"The MYD88-Independent Pathway Is Not Mobilized in Human Neutrophils Stimulated via TLR4","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Associazione Italiana per la Ricerca sul Cancro","keywords":"TLR4; Cell biology; CXCL10; Transcription factor; Signal transduction; Biology; Myeloid; Innate immune system; Chemokine; Cancer research; Immunology; Immune system; Gene; Biochemistry","score_opus":0.010724175338799815,"score_gpt":0.2543121632065368,"score_spread":0.243587987867737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119605300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98827195,0.00817572,0.00031814104,0.0016540582,0.0010441906,0.0002465841,0.0000013248241,0.000016303444,0.00027173795],"genre_scores_gemma":[0.9977969,0.0007943576,0.000008444446,0.00027184002,0.0000517454,0.000002628138,0.0000045319866,0.000018311595,0.0010512321],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99695027,0.0010802457,0.0011993496,0.00012240715,0.00008750898,0.0005602489],"domain_scores_gemma":[0.9974944,0.0010024739,0.0007703255,0.00047498266,0.00024173173,0.000016069851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0042638173,0.00020706722,0.00041385432,0.00027716777,0.00049790076,0.000017874223,0.00078588404,0.00036278437,0.00024657068],"category_scores_gemma":[0.0001639494,0.00011499562,0.00017515913,0.00022515269,0.00043674154,0.00013974322,0.00013155735,0.0011852037,0.00017748201],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0049300212,0.000095651325,0.00016297787,0.0000024080728,0.00033120462,0.00003264066,0.0014272507,0.000041723808,0.98027706,0.00041982572,0.00019176133,0.012087468],"study_design_scores_gemma":[0.0045998064,0.001040123,0.06007036,0.000041923027,0.0000651457,0.0014176533,0.0009991173,0.000009023649,0.91149366,0.0008188332,0.019269802,0.0001745296],"about_ca_topic_score_codex":0.00015253141,"about_ca_topic_score_gemma":0.00006876062,"teacher_disagreement_score":0.06878338,"about_ca_system_score_codex":0.0001319334,"about_ca_system_score_gemma":0.000106792664,"threshold_uncertainty_score":0.5149186},"labels":[],"label_agreement":null},{"id":"W2119752695","doi":"10.7150/ijms.5.1","title":"Differential Constitutive and Cytokine-Modulated Expression of Human Toll-like Receptors in Primary Neutrophils, Monocytes, and Macrophages","year":2008,"lang":"en","type":"article","venue":"International Journal of Medical Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":162,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institutes of Health; National Heart, Lung, and Blood Institute; University of Washington","keywords":"TLR2; Innate immune system; TLR9; Biology; TLR4; Monocyte; TLR5; Proinflammatory cytokine; Immunology; Toll-like receptor; Cytokine; Granulocyte; Receptor; Immune system; Cell biology; Inflammation; Gene expression; Gene","score_opus":0.020009333378884095,"score_gpt":0.2878880122703132,"score_spread":0.2678786788914291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119752695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99648285,0.0016806601,0.000065725464,0.0008197735,0.00079122034,0.000037264057,0.0000016742456,0.0000028594334,0.00011799039],"genre_scores_gemma":[0.9979622,0.0018577834,0.000045279583,0.000041098752,0.000041566782,6.0666713e-7,0.0000045715055,0.0000015241002,0.0000453714],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990322,0.00013069237,0.00039458062,0.00009646333,0.00025070828,0.000095375035],"domain_scores_gemma":[0.99949443,0.00013531066,0.00023940604,0.000028817161,0.0000744146,0.00002763198],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040529165,0.00006643847,0.00018190338,0.00021185944,0.00009182904,0.000010617329,0.0002646027,0.00010652954,0.00021175099],"category_scores_gemma":[0.0001375747,0.000045363064,0.000029896266,0.00006401761,0.0011158738,0.00019034775,0.00009880608,0.00018933888,0.0000011751591],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037274096,0.00011253155,0.018189782,0.0000070123324,0.000052993884,0.00011826699,0.00065540755,0.0000061234687,0.96976966,0.0005958614,0.00036479533,0.0097548105],"study_design_scores_gemma":[0.0053153844,0.00087278534,0.30777812,0.0007355016,0.00001981765,0.0028719292,0.000383843,0.00005645003,0.67853975,0.0005791296,0.002665416,0.00018187304],"about_ca_topic_score_codex":0.00005417546,"about_ca_topic_score_gemma":0.0000037142452,"teacher_disagreement_score":0.29122993,"about_ca_system_score_codex":0.000025182184,"about_ca_system_score_gemma":0.00013020747,"threshold_uncertainty_score":0.41114834},"labels":[],"label_agreement":null},{"id":"W2119847432","doi":"10.4049/jimmunol.169.10.5679","title":"Granulocyte-Macrophage Colony-Stimulating Factor (GM-CSF) and Inflammatory Stimuli Up-Regulate Secretion of the Soluble GM-CSF Receptor in Human Monocytes: Evidence for Ectodomain Shedding of the Cell Surface GM-CSF Receptor α Subunit","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Alberta Cancer Foundation","funders":"Canadian Institutes of Health Research; Arthritis Society","keywords":"Ectodomain; Secretion; Biology; Alternative splicing; Cell culture; Cell biology; Receptor; Molecular biology; Granulocyte macrophage colony-stimulating factor; Cytokine; Gene isoform; Gene; Immunology; Endocrinology; Biochemistry","score_opus":0.035345408629544495,"score_gpt":0.27074163387758593,"score_spread":0.23539622524804144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2119847432","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98468494,0.012146033,0.0001879097,0.0006263209,0.0013246196,0.0009270881,0.000019764648,0.000017323018,0.000066024644],"genre_scores_gemma":[0.99666774,0.0014407843,0.00013613066,0.000046747275,0.00004659803,0.000011025418,0.0000075061275,0.000040676234,0.0016027833],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9949693,0.00246107,0.0016064484,0.0002461128,0.00015801909,0.0005590557],"domain_scores_gemma":[0.99428874,0.0023739424,0.0021783672,0.00065372954,0.0004791631,0.000026082278],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025286467,0.00036191355,0.00079726905,0.00022859311,0.0006596763,0.000028243729,0.0010177874,0.00050010526,0.00043225344],"category_scores_gemma":[0.0011385978,0.00022614929,0.0003129119,0.00037627397,0.0009490433,0.0004900969,0.00033833127,0.0010271353,0.000018025876],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023616678,0.000085535095,0.0034421475,0.00011122666,0.00023834499,8.521068e-7,0.004867528,0.0017229118,0.98564756,0.00010091933,0.00034761,0.0010736904],"study_design_scores_gemma":[0.004375952,0.0010619077,0.029922083,0.0008201986,0.00017356704,0.00009800818,0.001413327,0.0007723164,0.95945793,0.00018501632,0.0014371685,0.000282533],"about_ca_topic_score_codex":0.00018539827,"about_ca_topic_score_gemma":0.00005352919,"teacher_disagreement_score":0.026479937,"about_ca_system_score_codex":0.0002263836,"about_ca_system_score_gemma":0.00014328372,"threshold_uncertainty_score":0.92221004},"labels":[],"label_agreement":null},{"id":"W2120037979","doi":"10.1182/blood-2010-12-325951","title":"β2-Glycoprotein I: a novel component of innate immunity","year":2011,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":126,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Lunds Universitet; Medical Research Council; ZonMw","keywords":"Innate immune system; Sepsis; Lipopolysaccharide; Immunology; Biology; Immunity; Microbiology; Immune system; Monocyte; Inflammation; Tumor necrosis factor alpha; Gram-negative bacteria; Acquired immune system; Tissue factor; Bacterial outer membrane; Neutralization; Antibody; Medicine; Escherichia coli; Internal medicine; Biochemistry","score_opus":0.024442880841813976,"score_gpt":0.21247249555939096,"score_spread":0.18802961471757698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120037979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99429893,0.00092145684,0.00021359326,0.000019193258,0.00014382895,0.00016254366,0.00000773044,0.000038297974,0.004194425],"genre_scores_gemma":[0.99926776,0.00002817926,0.0002546525,0.000019856308,0.0000064771425,0.000014397593,0.000034808858,0.000008187013,0.00036566632],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993354,0.00011127278,0.0002682918,0.00009710945,0.000021342226,0.00016660117],"domain_scores_gemma":[0.99949425,0.00003153717,0.00013436963,0.00027768954,0.00005428355,0.000007839639],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023774797,0.00009348494,0.0001757453,0.000086183936,0.0000708271,0.000002075551,0.00017051838,0.00013374934,0.0004594111],"category_scores_gemma":[0.00004688086,0.00008310796,0.00006603459,0.000082987826,0.00010962657,0.000065084714,0.00007406503,0.00015575484,0.00027345965],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024735538,0.00071175786,0.00044989574,0.000013240063,0.00015544787,0.0000016534203,0.0012365135,1.1184715e-7,0.99433213,0.0017306394,0.000033981563,0.0010872951],"study_design_scores_gemma":[0.0022882342,0.00018258081,0.032873254,0.000031121228,0.000044388988,0.000043838623,0.000121176214,6.280024e-7,0.96172583,0.00011847105,0.002478597,0.00009190299],"about_ca_topic_score_codex":0.0002866153,"about_ca_topic_score_gemma":0.0000075273433,"teacher_disagreement_score":0.032606304,"about_ca_system_score_codex":0.0000056499107,"about_ca_system_score_gemma":0.000033417964,"threshold_uncertainty_score":0.50302297},"labels":[],"label_agreement":null},{"id":"W2120088368","doi":"10.1086/314070","title":"Bacille Calmette-Guérin Vaccine","year":2000,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Thornhill Medical (Canada); Princess Margaret Cancer Centre; University of Toronto","funders":"","keywords":"Garcia; Art history; Environmental ethics; Humanities; Philosophy; Art","score_opus":0.014834747802701186,"score_gpt":0.3042291706333402,"score_spread":0.28939442283063904,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120088368","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98605806,0.0024280765,0.00002584313,0.000359791,0.0007718648,0.00018778235,0.000017441935,0.00028438817,0.009866747],"genre_scores_gemma":[0.9873276,0.0007630977,0.000002188572,0.0008422951,0.00016226365,0.000029861578,0.00014333415,0.00001659513,0.010712775],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99836636,0.00045544287,0.0005666475,0.00028814966,0.000030122841,0.00029325145],"domain_scores_gemma":[0.99892324,0.0005262242,0.00008618475,0.00035621895,0.00005511691,0.000053026222],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025633082,0.00015926606,0.00033656167,0.00006311298,0.00020474763,0.000020018284,0.00013988672,0.00023741895,0.019397471],"category_scores_gemma":[0.00045057057,0.0001357924,0.00026804183,0.0001424068,0.00012673669,0.00012839043,0.000037208552,0.0002704837,0.012526409],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010111671,0.0017852433,0.2942143,0.00003228395,0.0005873817,0.000033361383,0.00006602686,0.000056427907,0.00548266,0.00068175874,0.116447784,0.5796016],"study_design_scores_gemma":[0.0035760754,0.0006117809,0.47146878,0.000025600675,0.00013905582,0.000025190906,0.000016249794,0.000011958292,0.0025874916,0.0005222053,0.5207297,0.00028587517],"about_ca_topic_score_codex":0.000035312267,"about_ca_topic_score_gemma":0.000010754095,"teacher_disagreement_score":0.5793157,"about_ca_system_score_codex":0.000023959808,"about_ca_system_score_gemma":0.000063123734,"threshold_uncertainty_score":0.98824245},"labels":[],"label_agreement":null},{"id":"W2120211786","doi":"10.1124/pr.109.001073","title":"Therapeutic Targeting of Toll-Like Receptors for Infectious and Inflammatory Diseases and Cancer","year":2009,"lang":"en","type":"review","venue":"Pharmacological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":422,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Science Foundation Ireland; Horserace Betting Levy Board; Research Councils UK; Wellcome Trust","keywords":"Immunology; TRIF; TLR2; Immune system; Toll-like receptor; Inflammation; TLR7; TLR4; Innate immune system; Tumor necrosis factor alpha; Transcription factor; Medicine; Receptor; Interferon regulatory factors; Cancer; Biology; Cancer research; Gene; Genetics","score_opus":0.054979104757268644,"score_gpt":0.3763082175126839,"score_spread":0.32132911275541526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120211786","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003457681,0.9961571,0.000019299974,0.000028693361,0.0007824561,0.0025605361,0.000022989618,0.00004048161,0.000042669588],"genre_scores_gemma":[0.00009675083,0.9982467,0.000022405444,0.00018910364,0.0000933871,0.00090592785,0.00010555512,0.000020289546,0.0003198728],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972994,0.0009848916,0.0010108114,0.0003726768,0.000029264722,0.00030298854],"domain_scores_gemma":[0.99828696,0.0007277075,0.00076954823,0.00012175323,0.000054102493,0.000039942563],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00067379186,0.00040523364,0.0020245898,0.00011665785,0.0001511392,0.000014280778,0.00015276809,0.0003933079,0.0003306589],"category_scores_gemma":[0.00025992218,0.00025886658,0.00039220462,0.000118338314,0.0001967402,0.00008410955,0.000078861965,0.00034117783,0.000027227004],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063925225,0.00004679355,0.00002449232,0.0070955,0.00026413047,7.939673e-7,0.00002834619,8.711322e-8,0.0012172983,0.000075102624,0.003578689,0.98760486],"study_design_scores_gemma":[0.00048430255,0.00018558936,0.00003903013,0.0024690195,0.0020630045,0.000016901828,0.0000037700638,7.4290983e-7,0.00011817267,0.000054201137,0.9942932,0.00027207215],"about_ca_topic_score_codex":0.0000026657494,"about_ca_topic_score_gemma":3.8311777e-7,"teacher_disagreement_score":0.9907145,"about_ca_system_score_codex":0.00005301627,"about_ca_system_score_gemma":0.00009870714,"threshold_uncertainty_score":0.99998635},"labels":[],"label_agreement":null},{"id":"W2120290311","doi":"10.4049/jimmunol.178.2.993","title":"Oxidized Phospholipids Inhibit Phagocytosis and Impair Outcome in Gram-Negative Sepsis In Vivo","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Phagocytosis; CD14; Sepsis; Phosphorylcholine; Inflammation; In vivo; Microbiology; Lipopolysaccharide; Macrophage; Biology; Chemistry; Immunology; Cell biology; Immune system; In vitro; Biochemistry","score_opus":0.012060895421087778,"score_gpt":0.2649590267563441,"score_spread":0.2528981313352563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120290311","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99025404,0.007688737,0.00008268271,0.0009191338,0.00054373353,0.00018042132,0.0000019009518,0.000010585207,0.00031877818],"genre_scores_gemma":[0.99811476,0.0012353138,0.000076484015,0.00022587585,0.000022871709,0.0000028297832,0.0000014282575,0.000013502869,0.0003069345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974995,0.000761898,0.0011271521,0.00011570121,0.000049577542,0.00044613675],"domain_scores_gemma":[0.99805784,0.0010698988,0.0005452785,0.00020571543,0.00010584652,0.00001544518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034966425,0.00019190618,0.00054993044,0.00058368465,0.00009921008,0.000008773055,0.00029949995,0.0003161768,0.00020267682],"category_scores_gemma":[0.0004771465,0.00013130155,0.000102054226,0.00036558954,0.00038793613,0.00022370234,0.00011014161,0.0008716767,0.000038895036],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056534004,0.00011802673,0.0120167835,0.000007139024,0.00019446114,0.000032542015,0.0048509417,0.000007410744,0.97191036,0.00022159568,0.00016061304,0.004826752],"study_design_scores_gemma":[0.0064395033,0.000627929,0.13678887,0.000067956666,0.00005175912,0.0009366019,0.0039049163,0.0000024095536,0.8481297,0.0007383578,0.0021431227,0.00016884971],"about_ca_topic_score_codex":0.00034499815,"about_ca_topic_score_gemma":0.00018820133,"teacher_disagreement_score":0.124772094,"about_ca_system_score_codex":0.00015033741,"about_ca_system_score_gemma":0.00007271179,"threshold_uncertainty_score":0.5354322},"labels":[],"label_agreement":null},{"id":"W2120699390","doi":"10.1096/fj.06-7227rev","title":"Resolution of in flammation: state of the art, definitions and terms","year":2007,"lang":"en","type":"review","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1034,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Norges Idrettshøgskole; Versus Arthritis","keywords":"Inflammation; Endogeny; Resolution (logic); Neuroscience; Inflammatory response; Field (mathematics); Medicine; Immunology; Computer science; Biology; Artificial intelligence; Internal medicine; Mathematics","score_opus":0.052263102953716535,"score_gpt":0.2882030987810819,"score_spread":0.23593999582736538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2120699390","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0075789522,0.9909271,0.00008168713,0.00006700376,0.00028520633,0.00025338217,0.000020236615,0.0000029997689,0.0007834153],"genre_scores_gemma":[0.0039123087,0.9954061,0.0000142631725,0.000007640266,0.000022095332,0.0000048218067,0.00003056909,0.000007927663,0.0005942949],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982235,0.0007596249,0.0007605013,0.00006599074,0.000045092776,0.00014533583],"domain_scores_gemma":[0.99863636,0.00030154936,0.0007981459,0.00020594912,0.00005144164,0.0000065642735],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013139158,0.00012081113,0.00045279454,0.00020095191,0.0001470691,0.000008161691,0.00020870892,0.00014755705,0.00005856736],"category_scores_gemma":[0.000100874655,0.00006144947,0.00018633432,0.0001870105,0.0002474102,0.00006262664,0.000056520348,0.0005898116,0.000031595708],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012360515,0.000044594704,0.00002512251,0.0010838739,0.0002489201,0.0000043208834,0.0006558756,0.000010865668,0.009879838,0.0011238006,0.000626361,0.9861728],"study_design_scores_gemma":[0.000939322,0.0001429985,0.0013165878,0.012617266,0.00056346913,0.0026946831,0.00012254766,0.0000031169193,0.017707746,0.0019374448,0.9617287,0.00022613473],"about_ca_topic_score_codex":0.000005874882,"about_ca_topic_score_gemma":0.000013296358,"teacher_disagreement_score":0.9859467,"about_ca_system_score_codex":0.000038797072,"about_ca_system_score_gemma":0.00014596517,"threshold_uncertainty_score":0.25624707},"labels":[],"label_agreement":null},{"id":"W2121261816","doi":"10.1136/mp.56.4.232","title":"Isolation and partial characterisation of a new antiproliferative substance from human leucocytes inhibiting growth of <i>Candida albicans</i>","year":2003,"lang":"en","type":"article","venue":"Molecular Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"IONICS Mass Spectrometry (Canada)","funders":"","keywords":"Candida albicans; Cytotoxicity; Corpus albicans; Cytotoxic T cell; Biochemistry; Lysis; Chemistry; Molecular mass; Biology; Microbiology; Molecular biology; In vitro; Enzyme","score_opus":0.009219399662876118,"score_gpt":0.22324917468002392,"score_spread":0.21402977501714782,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121261816","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98857796,0.0012292134,0.0096382955,0.00005812261,0.00008581105,0.0001549073,0.000011284429,0.000013247261,0.00023114176],"genre_scores_gemma":[0.99931645,0.00004208919,0.00036404692,0.00005700574,0.000010633073,0.000007503948,0.00014597196,0.000009993286,0.000046311012],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887633,0.0003456752,0.0003967429,0.00019825525,0.000029345345,0.00015364854],"domain_scores_gemma":[0.99939215,0.00006209445,0.0003209658,0.00012862282,0.0000841957,0.000011954879],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021491536,0.00011663979,0.00028030842,0.000089020905,0.00006686306,0.000004558607,0.00004988111,0.00017703472,0.00008305761],"category_scores_gemma":[0.00012970167,0.00011845747,0.000045891204,0.000088987596,0.0001556297,0.00009723241,0.000014880377,0.00011211304,0.0000050987405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014414296,0.000027175538,0.009522837,0.000009960671,0.000041477495,0.00000734658,0.0020528045,0.0000012186714,0.9813458,0.006387045,0.000012125926,0.00044811945],"study_design_scores_gemma":[0.001108044,0.00019279153,0.024400856,0.000031157335,0.000032853484,0.000029545543,0.0001275166,0.000005154584,0.9728879,0.0009782431,0.00010932043,0.00009664677],"about_ca_topic_score_codex":0.00011222804,"about_ca_topic_score_gemma":0.000011296557,"teacher_disagreement_score":0.014878019,"about_ca_system_score_codex":0.000011081348,"about_ca_system_score_gemma":0.000046769834,"threshold_uncertainty_score":0.48305553},"labels":[],"label_agreement":null},{"id":"W2121327910","doi":"10.1074/jbc.m403763200","title":"Nucleic Acid Is a Novel Ligand for Innate, Immune Pattern Recognition Collectins Surfactant Proteins A and D and Mannose-binding Lectin","year":2004,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"Medical Research Council; Canadian Institutes of Health Research; University of California, San Francisco; Wellcome Trust","keywords":"Collectin; Mannan-binding lectin; Lectin; Nucleic acid; Innate immune system; Mannose; Ficolin; Surfactant protein D; Mannose receptor; Ligand (biochemistry); C-type lectin; Chemistry; Biology; Biochemistry; Receptor","score_opus":0.02580781301940269,"score_gpt":0.23948800733016495,"score_spread":0.21368019431076227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121327910","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965127,0.001961928,0.00045081577,0.00066660193,0.00009947558,0.00021211004,0.00003106337,0.000013260547,0.000052038227],"genre_scores_gemma":[0.9986042,0.00056642975,0.0005249244,0.000070066955,0.00004540376,0.000010964712,0.000033043198,0.000008702135,0.00013631604],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910563,0.000032540807,0.00045415715,0.00016534475,0.000029235147,0.00021311454],"domain_scores_gemma":[0.99926704,0.00010433386,0.00038513722,0.00008401063,0.0001317208,0.000027775353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000412453,0.00014909706,0.00030784137,0.00005028097,0.00019094346,0.00003148057,0.00009925025,0.0003478107,0.00004257981],"category_scores_gemma":[0.0002893809,0.00010912642,0.00009101904,0.00008467657,0.0001459158,0.000095773416,0.00006037926,0.0003253599,0.000004962928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080355344,0.00010279998,0.00037949442,0.000053648575,0.00010665873,0.0000062055283,0.00023742193,1.2589956e-7,0.9928296,0.0000012343235,0.000033052238,0.005446157],"study_design_scores_gemma":[0.0031814105,0.0006436685,0.0019280467,0.00016697729,0.000032700184,0.0012974133,0.00023902502,0.0000019410174,0.9908724,0.00023129173,0.0012567842,0.00014838566],"about_ca_topic_score_codex":0.000008223099,"about_ca_topic_score_gemma":7.2391833e-7,"teacher_disagreement_score":0.005297771,"about_ca_system_score_codex":0.00005711638,"about_ca_system_score_gemma":0.000060678347,"threshold_uncertainty_score":0.4450046},"labels":[],"label_agreement":null},{"id":"W2121581410","doi":"10.3945/jn.112.167866","title":"β-1,4-Mannobiose Stimulates Innate Immune Responses and Induces TLR4-Dependent Activation of Mouse Macrophages but Reduces Severity of Inflammation during Endotoxemia in Mice","year":2013,"lang":"en","type":"article","venue":"Journal of Nutrition","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"TLR4; TLR2; Lipoteichoic acid; Immune system; Tumor necrosis factor alpha; Lipopolysaccharide; Endocrinology; Cytokine; Inflammation; Biology; Internal medicine; Immunology; Chemistry; Medicine","score_opus":0.00879823218305738,"score_gpt":0.2337736542672881,"score_spread":0.22497542208423071,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121581410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99724156,0.0019767846,0.000008131138,0.00030147424,0.00011159227,0.00033237447,0.0000074890636,0.000008177829,0.000012406793],"genre_scores_gemma":[0.9983381,0.0013143179,0.00013274886,0.0000038041073,0.000031922445,0.0000118968255,0.000020393001,0.000009393222,0.00013744617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821925,0.00041908544,0.0010147617,0.000109346736,0.00008753362,0.00015001807],"domain_scores_gemma":[0.9981167,0.0002580491,0.0011024444,0.000098408585,0.00041012326,0.000014292167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005727583,0.0001342128,0.00036781473,0.00061785,0.00006548244,0.000019186895,0.000117778145,0.00021674923,0.000045381024],"category_scores_gemma":[0.00034968404,0.00012308915,0.00007124889,0.00016209397,0.000109330365,0.0010180285,0.00004315981,0.00028681997,0.000005003796],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023872075,0.00022205936,0.0006014729,0.00020971459,0.00008098201,0.0000032322055,0.0007566662,0.0000348237,0.99335057,0.0000140851735,0.000014440682,0.0023247337],"study_design_scores_gemma":[0.0026054399,0.00027996048,0.09802626,0.0004806042,0.000022765087,0.000095019604,0.00094711466,0.000010692392,0.89721614,0.0002088676,0.000014455848,0.000092655064],"about_ca_topic_score_codex":0.00015160583,"about_ca_topic_score_gemma":0.0000024827548,"teacher_disagreement_score":0.09742478,"about_ca_system_score_codex":0.00007013799,"about_ca_system_score_gemma":0.00005041595,"threshold_uncertainty_score":0.501943},"labels":[],"label_agreement":null},{"id":"W2121753159","doi":"10.4049/jimmunol.169.2.809","title":"Tumor-Infiltrating CD4+ T Lymphocytes Express APO2 Ligand (APO2L)/TRAIL upon Specific Stimulation with Autologous Lung Carcinoma Cells: Role of IFN-α on APO2L/TRAIL Expression and -Mediated Cytotoxicity","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"Institut Gustave-Roussy","keywords":"Cancer research; Stimulation; Cytotoxic T cell; Lewis lung carcinoma; Cytotoxicity; Lung; Ligand (biochemistry); Cell biology; Immunology; Chemistry; Biology; Medicine; Receptor; Neuroscience; Internal medicine; In vitro; Cancer; Metastasis","score_opus":0.00927601100976816,"score_gpt":0.19895322041621802,"score_spread":0.18967720940644986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121753159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9812309,0.017441658,0.00014782322,0.00013610921,0.00031663416,0.00030533588,0.00001124851,0.000033326658,0.000376925],"genre_scores_gemma":[0.99847317,0.0010779683,0.00015208572,0.000044410754,0.0000614476,0.0000064314377,0.000016014264,0.000031569725,0.0001369293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972368,0.0009528109,0.0009905058,0.000231466,0.0001339216,0.00045450465],"domain_scores_gemma":[0.9970331,0.0009774709,0.0012995,0.00040977827,0.00024747933,0.00003266084],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077584607,0.00034132728,0.00067582063,0.00033560916,0.0003569321,0.000024707537,0.00041197342,0.00034516997,0.0002192275],"category_scores_gemma":[0.00015057532,0.0002253305,0.00011302628,0.00019969838,0.00046103215,0.00031124364,0.00008736567,0.0006965008,0.000037883692],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004113798,0.00030014777,0.00050631055,0.000026400267,0.00021301286,0.000021305583,0.0036571017,0.00033947657,0.9870554,0.000045026365,0.0003168612,0.0034051228],"study_design_scores_gemma":[0.0060413056,0.0018250983,0.014384501,0.00025743345,0.00010196069,0.0013205762,0.0018343877,0.000494236,0.9726201,0.00003683404,0.0008470666,0.0002364938],"about_ca_topic_score_codex":0.000045759574,"about_ca_topic_score_gemma":0.000004324236,"teacher_disagreement_score":0.017242204,"about_ca_system_score_codex":0.00010752442,"about_ca_system_score_gemma":0.00007989281,"threshold_uncertainty_score":0.9188711},"labels":[],"label_agreement":null},{"id":"W2121839684","doi":"10.1523/jneurosci.1077-04.2004","title":"Long-Term Alterations in Neuroimmune Responses after Neonatal Exposure to Lipopolysaccharide","year":2004,"lang":"en","type":"article","venue":"Journal of Neuroscience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":141,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Heritage Foundation for Medical Research; Fondation pour la Recherche Médicale","keywords":"Lipopolysaccharide; Neurochemical; Immune system; Cyclooxygenase; Internal medicine; Medicine; Endocrinology; Immunology; Prostaglandin E2; Innate immune system; Biology; Enzyme","score_opus":0.015449832861670364,"score_gpt":0.2683456043987624,"score_spread":0.2528957715370921,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121839684","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994993,0.00073744723,0.0009577494,0.0018508702,0.001315791,0.00011748928,0.000002861594,0.000009978474,0.000014839776],"genre_scores_gemma":[0.99852455,0.00007703415,0.00007363242,0.0008215164,0.000032891356,0.0000059256317,8.0054457e-7,0.0000081668995,0.00045550958],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9987536,0.00018984599,0.00053319725,0.00016757817,0.0000911154,0.00026467186],"domain_scores_gemma":[0.99938464,0.00008520736,0.00019367613,0.00020710309,0.00009444659,0.000034954897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041121233,0.00011769711,0.0001885914,0.00046507077,0.000113653914,0.000052415264,0.00035141964,0.00006889159,0.000029487539],"category_scores_gemma":[0.00056623726,0.00009993442,0.00008262929,0.0003007917,0.00011568393,0.0005678141,0.0000754594,0.00034356973,0.0000700429],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012083211,0.000070249844,0.0038891798,0.0000031257473,0.0000027383599,0.0003135893,0.0007001715,0.00035978033,0.9916904,0.00006467019,0.000021127125,0.0016766392],"study_design_scores_gemma":[0.00094457006,0.0009259332,0.68317866,0.000088839886,0.0000076200467,0.0016945584,0.000038207203,7.9315026e-7,0.3121885,0.000049486356,0.00077392365,0.00010889079],"about_ca_topic_score_codex":0.000011674832,"about_ca_topic_score_gemma":0.000020988358,"teacher_disagreement_score":0.6795019,"about_ca_system_score_codex":0.00005302213,"about_ca_system_score_gemma":0.0002007802,"threshold_uncertainty_score":0.40752074},"labels":[],"label_agreement":null},{"id":"W2121856197","doi":"10.1128/iai.68.4.1988-1996.2000","title":"Purified Lipopolysaccharide from<i>Francisella tularensis</i>Live Vaccine Strain (LVS) Induces Protective Immunity against LVS Infection That Requires B Cells and Gamma Interferon","year":2000,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Francisella tularensis; Biology; Lipopolysaccharide; Microbiology; Tularemia; Immunity; Antibody; Listeria monocytogenes; Virology; Attenuated vaccine; Francisella; Polyclonal antibodies; Interferon gamma; Immune system; Immunology; Bacteria; Virulence; Gene","score_opus":0.014604060396513177,"score_gpt":0.23010757841465662,"score_spread":0.21550351801814344,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121856197","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99565107,0.0014387392,0.00020142959,0.00014115096,0.00070663745,0.00074526854,0.000053892345,0.00023090142,0.00083089573],"genre_scores_gemma":[0.99444956,0.0044424827,0.000016737975,0.00016268124,0.00007266246,0.000078497105,0.00027559864,0.000033034186,0.0004687282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99716794,0.0013508387,0.0005468316,0.00043489924,0.00007726981,0.0004222033],"domain_scores_gemma":[0.9987576,0.0002616746,0.00028745722,0.0004826136,0.00015357176,0.000057056794],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007255638,0.0004318904,0.00050666573,0.00029993517,0.0009590605,0.00013231761,0.00013578025,0.00057356746,0.0011949724],"category_scores_gemma":[0.00013550457,0.0004099554,0.00013078941,0.00020058581,0.00026367244,0.00078110205,0.00013266435,0.0011533801,0.00026667086],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013210868,0.0001738284,0.0017673465,0.000035055193,0.0002611923,0.0000025125962,0.0025195936,0.000010320737,0.86869323,0.000026838194,0.00011851333,0.1250705],"study_design_scores_gemma":[0.0021435018,0.0006459269,0.1647317,0.000158439,0.00009405545,0.00005641487,0.0005495677,0.000023602011,0.82505673,0.00036651912,0.005735657,0.00043790092],"about_ca_topic_score_codex":0.016855268,"about_ca_topic_score_gemma":0.0010012728,"teacher_disagreement_score":0.16296434,"about_ca_system_score_codex":0.00010842405,"about_ca_system_score_gemma":0.00006541732,"threshold_uncertainty_score":0.99983525},"labels":[],"label_agreement":null},{"id":"W2121874550","doi":"10.4049/jimmunol.0802971","title":"Differential Role for c-Rel and C/EBPβ/δ in TLR-Mediated Induction of Proinflammatory Cytokines","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; Canadian Institutes of Health Research; National Institutes of Health; University of Pennsylvania","keywords":"Proinflammatory cytokine; Transcription factor; Biology; Cell biology; Cytokine; Signal transduction; Kinase; Stimulation; Immunology; Chemistry; Inflammation; Endocrinology; Biochemistry; Gene","score_opus":0.006890921451452357,"score_gpt":0.21978165521360124,"score_spread":0.21289073376214887,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121874550","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99240094,0.0060431445,0.00013939153,0.0008001789,0.00037926377,0.00019744673,0.0000021275077,0.000009223443,0.000028307635],"genre_scores_gemma":[0.9990388,0.0007704959,0.00002710605,0.000028321023,0.00004027315,0.000002913888,0.000008008503,0.000007747812,0.00007632083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988088,0.00032168475,0.0005945317,0.000064038475,0.000028353548,0.00018259892],"domain_scores_gemma":[0.99894583,0.00025253434,0.0005270769,0.00012852669,0.00013952256,0.0000065027134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00052857056,0.00010660696,0.00031859506,0.0002565794,0.00006880578,0.0000035509593,0.00017611614,0.00021092738,0.000022045733],"category_scores_gemma":[0.000213184,0.00007082771,0.000066283814,0.00008964576,0.00018075718,0.00013550444,0.000025783922,0.0003082872,0.000005114182],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034954406,0.000073765106,0.0002476977,0.000007750262,0.00011748528,9.341443e-7,0.0010379917,0.0000057464435,0.9805815,0.0004049429,0.000093539005,0.013933158],"study_design_scores_gemma":[0.003994357,0.0016259996,0.16076088,0.00007555541,0.000079006204,0.00053328776,0.0009279443,0.000013865445,0.8277299,0.0016324932,0.0025206334,0.00010608498],"about_ca_topic_score_codex":0.000019591758,"about_ca_topic_score_gemma":0.000006451653,"teacher_disagreement_score":0.16051319,"about_ca_system_score_codex":0.000024961268,"about_ca_system_score_gemma":0.00007359216,"threshold_uncertainty_score":0.28882703},"labels":[],"label_agreement":null},{"id":"W2121900331","doi":"10.1016/j.jaci.2010.09.021","title":"Innate signals from Nod2 block respiratory tolerance and program TH2-driven allergic inflammation","year":2010,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":91,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Institutes of Health","keywords":"Thymic stromal lymphopoietin; Immunology; NOD2; Pattern recognition receptor; Innate immune system; Acquired immune system; Immune tolerance; Innate lymphoid cell; Allergic inflammation; Inflammation; Biology; Medicine; Immune system","score_opus":0.01739700461109248,"score_gpt":0.30117560020643674,"score_spread":0.28377859559534424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121900331","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882129,0.008528743,0.000026982309,0.0011543408,0.0016596774,0.00017002871,0.000002857424,0.000033384895,0.0002111197],"genre_scores_gemma":[0.9922978,0.006453164,0.00040885972,0.00026722025,0.0003198056,0.0000087808085,0.000014664418,0.000017533952,0.000212171],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973547,0.0006361857,0.001401277,0.00025575535,0.000060374947,0.00029171316],"domain_scores_gemma":[0.9975426,0.0009098065,0.0009402057,0.00025894798,0.0002983457,0.000050097347],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009794934,0.00021558296,0.0006019003,0.00016063698,0.00018685964,0.00003801376,0.00027182588,0.0008381562,0.00026248593],"category_scores_gemma":[0.00064532313,0.00017489084,0.00016756363,0.00008803086,0.0006940732,0.0003167321,0.00013303329,0.0014693289,0.00006592671],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002535305,0.00027783267,0.0028656493,0.0000060344682,0.0021544774,0.000037329806,0.00040646014,0.000015189084,0.8516015,0.00071088766,0.00045776466,0.13893162],"study_design_scores_gemma":[0.010219664,0.0048007686,0.3607225,0.00020340629,0.00022258268,0.00048194666,0.00037663424,0.00012373335,0.08700948,0.00192547,0.533326,0.00058777706],"about_ca_topic_score_codex":0.000023211302,"about_ca_topic_score_gemma":0.00010297321,"teacher_disagreement_score":0.764592,"about_ca_system_score_codex":0.0000107327,"about_ca_system_score_gemma":0.0001263067,"threshold_uncertainty_score":0.7131842},"labels":[],"label_agreement":null},{"id":"W2121915579","doi":"10.1139/o03-070","title":"Biosynthesis, transport, and modification of lipid A","year":2004,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Lipid A; Lipopolysaccharide; Bacteria; Bacterial outer membrane; Biochemistry; Gram-negative bacteria; Biosynthesis; Enzyme; Lipid signaling; Phospholipid; Biology; Chemistry; Escherichia coli; Gene; Membrane","score_opus":0.01645982113128894,"score_gpt":0.25316069106222455,"score_spread":0.23670086993093561,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2121915579","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0053652124,0.99347866,0.000014327571,0.000013681295,0.000100957055,0.0002035343,0.00008088743,0.000019791036,0.0007229487],"genre_scores_gemma":[0.019670919,0.97859275,0.000023828174,0.0000042257043,0.000028830615,0.00002935928,0.0009416095,0.00001346956,0.00069502875],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99882597,0.00012397836,0.0004940205,0.00035631636,0.000011266996,0.00018843487],"domain_scores_gemma":[0.9992427,0.00011983842,0.00034971233,0.00024302679,0.000026234973,0.000018436587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016640063,0.00027467526,0.0008407067,0.00007909498,0.000065355154,0.0000030997828,0.00012977616,0.0010890379,0.00008080228],"category_scores_gemma":[0.000025223835,0.00022099339,0.00014618917,0.00007267961,0.0003687154,0.000019601108,0.00003423308,0.00021519723,0.000020753365],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060786922,0.00007060206,0.0000066977464,0.015995942,0.00016699136,0.0000010829704,0.00005894668,3.0459642e-8,0.39493883,0.00023056698,0.000026997444,0.5884425],"study_design_scores_gemma":[0.00025928463,0.00006470959,0.000003810201,0.0014073022,0.00026754933,0.000057252062,0.000020296962,5.9155397e-8,0.27396655,0.000023851037,0.72372687,0.00020247704],"about_ca_topic_score_codex":0.000014794124,"about_ca_topic_score_gemma":1.9839477e-7,"teacher_disagreement_score":0.72369987,"about_ca_system_score_codex":0.000019466243,"about_ca_system_score_gemma":0.00016095917,"threshold_uncertainty_score":0.90118486},"labels":[],"label_agreement":null},{"id":"W2122017112","doi":"10.1152/ajpgi.00042.2011","title":"Aspirin-triggered lipoxin enhances macrophage phagocytosis of bacteria while inhibiting inflammatory cytokine production","year":2011,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Innovates; Indian Institute of Technology Bombay","keywords":"Lipoxin; Inflammation; Macrophage; Efferocytosis; Phagocytosis; Lipid signaling; Lipopolysaccharide; Cytokine; Biology; Immunology; Receptor; Chemistry; Microbiology; In vitro; Biochemistry","score_opus":0.012212091660893714,"score_gpt":0.20711722247080958,"score_spread":0.19490513080991587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122017112","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986387,0.00062853325,0.00006394296,0.000043988406,0.00034119457,0.00014796155,0.000009708354,0.000025553012,0.00010044536],"genre_scores_gemma":[0.99744505,0.00026299065,0.0019030533,0.000050432893,0.00021195182,0.000008139782,0.00002433194,0.0000218878,0.00007216073],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974291,0.0007355772,0.00096661184,0.00035677454,0.000060416485,0.00045155996],"domain_scores_gemma":[0.99723077,0.00022427215,0.0018351318,0.00023156303,0.0004225289,0.000055758286],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004455723,0.00032063696,0.00089661515,0.00029254268,0.00014540007,0.000005613348,0.00028677742,0.000095214345,0.00033658845],"category_scores_gemma":[0.00019730572,0.00026042236,0.00020643097,0.00022608846,0.001593413,0.0003176098,0.00014392579,0.00051207194,0.000042810967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003469868,0.0002068866,0.0007516968,0.00007875952,0.00019449777,0.000010382602,0.00087209675,0.000007047181,0.98638654,0.0001468268,0.00007043233,0.0078049647],"study_design_scores_gemma":[0.0007569308,0.004246311,0.18857184,0.0002763699,0.00008651616,0.0015184934,0.00076105475,0.000004917905,0.8031694,0.00021456464,0.00020025649,0.00019329021],"about_ca_topic_score_codex":0.00011078884,"about_ca_topic_score_gemma":0.000003636462,"teacher_disagreement_score":0.18782015,"about_ca_system_score_codex":0.00003307695,"about_ca_system_score_gemma":0.000117988115,"threshold_uncertainty_score":0.9999848},"labels":[],"label_agreement":null},{"id":"W2122065046","doi":"10.4049/jimmunol.171.12.6680","title":"Soluble Forms of Toll-Like Receptor (TLR)2 Capable of Modulating TLR2 Signaling Are Present in Human Plasma and Breast Milk","year":2003,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":338,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Sanofi","keywords":"TLR2; Innate immune system; Cell biology; Receptor; CD14; Intracellular; Immune system; Biology; Toll-like receptor; Signal transduction; Lipopeptide; Immunology; Bacteria; Biochemistry","score_opus":0.010999524598389395,"score_gpt":0.22429335324915436,"score_spread":0.21329382865076496,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122065046","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922046,0.0068798414,0.000057274057,0.00016993268,0.00032161706,0.00013524781,0.0000030729054,0.000004116927,0.00022427132],"genre_scores_gemma":[0.9991176,0.00039278757,0.000088318884,0.000010787444,0.000012363821,0.0000019744577,0.0000040727837,0.000011706034,0.00036036564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998031,0.0006444635,0.000909592,0.000087194734,0.000052192194,0.0002755541],"domain_scores_gemma":[0.9982993,0.00027860003,0.0010256395,0.00020608204,0.0001801498,0.000010247049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013234921,0.00013734108,0.00049739104,0.0002487924,0.00013074998,0.0000046631135,0.00023504233,0.00021027194,0.00018249119],"category_scores_gemma":[0.00012236954,0.00009544825,0.00008674884,0.00013220156,0.000286452,0.00017434618,0.00006570991,0.00041158358,0.000005941245],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093975675,0.00009533062,0.0022561126,0.000032638316,0.00026488514,0.0000016454137,0.0014838526,0.00044771854,0.9928308,0.00057459995,0.0001298652,0.00094277237],"study_design_scores_gemma":[0.0026989907,0.0005741145,0.006334335,0.00025105782,0.000057711637,0.0009765881,0.0034583055,0.000023385603,0.9836567,0.0005726711,0.0012818973,0.000114222195],"about_ca_topic_score_codex":0.00010811253,"about_ca_topic_score_gemma":0.00001874855,"teacher_disagreement_score":0.009174102,"about_ca_system_score_codex":0.000040671923,"about_ca_system_score_gemma":0.00007452529,"threshold_uncertainty_score":0.38922668},"labels":[],"label_agreement":null},{"id":"W2122293552","doi":"10.1183/09031936.00076210","title":"A mouse GM-CSF receptor antibody attenuates neutrophilia in mice exposed to cigarette smoke","year":2011,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; McMaster University","keywords":"Bronchoalveolar lavage; Inflammation; Antibody; Immunology; Neutrophilia; Receptor; CD11c; CD8; Chemistry; Medicine; Internal medicine; Lung; Immune system","score_opus":0.04024556008890375,"score_gpt":0.25530973078170777,"score_spread":0.215064170692804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122293552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993731,0.0012537048,0.00005832046,0.00030107374,0.0008376824,0.00021075552,0.0000068321483,0.000067153036,0.0035334665],"genre_scores_gemma":[0.9948318,0.0001288282,0.00009762289,0.0027631877,0.00022763088,0.000005286811,0.000018566792,0.00007267893,0.0018543699],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99643755,0.0018753466,0.00076231867,0.0003174259,0.00007523633,0.00053215167],"domain_scores_gemma":[0.9990768,0.00005572233,0.000277726,0.00035172867,0.0001561321,0.00008189255],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0017121477,0.00026062562,0.00029818167,0.0004889202,0.00026635974,0.000056932844,0.0005243544,0.00012618408,0.0011575497],"category_scores_gemma":[0.0002460095,0.00021141543,0.00013226793,0.0002463236,0.0001013237,0.00031734022,0.00013459577,0.00081395655,0.003300518],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008992793,0.00010059032,0.0036827195,0.000005794788,0.00007156375,0.0002305551,0.002115295,0.000004375734,0.9770975,0.000026019794,0.00840639,0.00735989],"study_design_scores_gemma":[0.002037979,0.0007321471,0.06875534,0.00016192642,0.00002161357,0.00020122399,0.0003358679,4.826719e-7,0.6802337,0.000009617335,0.24713708,0.0003730204],"about_ca_topic_score_codex":0.000014230175,"about_ca_topic_score_gemma":0.0000045731967,"teacher_disagreement_score":0.29686382,"about_ca_system_score_codex":0.0000774542,"about_ca_system_score_gemma":0.00008234413,"threshold_uncertainty_score":0.9997555},"labels":[],"label_agreement":null},{"id":"W2122363894","doi":"10.1165/rcmb.2003-0259oc","title":"Cigarette Smoke Decreases Pulmonary Dendritic Cells and Impacts Antiviral Immune Responsiveness","year":2003,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":179,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Immune system; CD8; Immunology; Smoke; Lung; Respiratory system; Antibody; Tobacco smoke; Acquired immune system; Virus; Biology; Medicine; Chemistry; Internal medicine","score_opus":0.006219094292105139,"score_gpt":0.23632889802050458,"score_spread":0.23010980372839945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122363894","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96895194,0.029877257,0.00041112016,0.000073980926,0.00026053397,0.00009984711,0.0000053460467,0.000009396505,0.000310587],"genre_scores_gemma":[0.9980565,0.0011103622,0.00009710822,0.00064559537,0.000017367402,0.000003022228,0.0000056486515,0.00001958229,0.0000448567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972365,0.0015941955,0.00052683346,0.00023167627,0.000041399893,0.00036942097],"domain_scores_gemma":[0.998797,0.00027099642,0.0005073973,0.0002036975,0.0001496628,0.000071252325],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073559926,0.0002304897,0.0005295853,0.0002914611,0.00014366402,0.000018434523,0.00013967046,0.00016490955,0.000029252496],"category_scores_gemma":[0.00021708281,0.00019327152,0.00012811265,0.00016165541,0.0008577714,0.000104162515,0.00005274198,0.0003276964,0.0000068857266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069991045,0.00005739162,0.002874459,0.000013120219,0.00013162542,0.0001971948,0.00008489094,7.921447e-7,0.9819938,0.00041126422,0.000029986859,0.013505561],"study_design_scores_gemma":[0.0009891188,0.0020344672,0.005526546,0.000047971705,0.00010256959,0.00088046223,0.00045796038,4.3092436e-7,0.9633179,0.00015260711,0.026261393,0.00022858418],"about_ca_topic_score_codex":0.000025596348,"about_ca_topic_score_gemma":7.4960514e-7,"teacher_disagreement_score":0.029104525,"about_ca_system_score_codex":0.000021582913,"about_ca_system_score_gemma":0.00021010225,"threshold_uncertainty_score":0.7881384},"labels":[],"label_agreement":null},{"id":"W2122417188","doi":"10.4049/jimmunol.174.1.340","title":"The Functional and Structural Properties of MD-2 Required for Lipopolysaccharide Binding Are Absent in MD-1","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Mutant; Chemistry; Lipopolysaccharide; Alanine; Binding site; Mutation; Biochemistry; Transmembrane protein; Transfection; Escherichia coli; Molecular biology; Gene; Biology; Amino acid; Receptor","score_opus":0.021808308360589015,"score_gpt":0.23383789008548833,"score_spread":0.21202958172489933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122417188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95422345,0.042764526,0.000048063474,0.0022494558,0.000549164,0.00014748103,0.0000019158133,0.0000038768594,0.000012090012],"genre_scores_gemma":[0.9966318,0.002952795,0.000023096401,0.0000380108,0.000061103456,0.000004995776,0.0000017865985,0.0000068204668,0.00027960716],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988502,0.00029975863,0.0005548772,0.000058164427,0.000034733013,0.00020225733],"domain_scores_gemma":[0.998781,0.00036677887,0.00057035417,0.00013485218,0.00014166223,0.0000053428985],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009288376,0.000096179334,0.00023159874,0.00012702934,0.0002467829,0.00000900319,0.00020931041,0.00011574477,0.000024761246],"category_scores_gemma":[0.0002504373,0.00004883843,0.00007027037,0.00005096273,0.00036648734,0.00014985497,0.000056485467,0.0002725269,0.0000075925786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034983584,0.000013947279,0.0003053409,0.000007868437,0.00021097962,4.1611352e-7,0.00088982075,0.000044954348,0.98551345,0.0005809484,0.00040955245,0.00852438],"study_design_scores_gemma":[0.0019346268,0.00036960276,0.011812459,0.00009917804,0.00005658815,0.00067398837,0.0029441132,0.000025034333,0.9748453,0.00031535613,0.0068393606,0.00008440188],"about_ca_topic_score_codex":0.000024470524,"about_ca_topic_score_gemma":0.000038684448,"teacher_disagreement_score":0.042408355,"about_ca_system_score_codex":0.00004888134,"about_ca_system_score_gemma":0.00007191451,"threshold_uncertainty_score":0.19915733},"labels":[],"label_agreement":null},{"id":"W2122489686","doi":"10.1016/j.vaccine.2009.05.094","title":"A novel vaccine adjuvant comprised of a synthetic innate defence regulator peptide and CpG oligonucleotide links innate and adaptive immunity","year":2009,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":80,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan; University of British Columbia; Dalhousie University; Izaak Walton Killam Health Centre; Institute of Infection and Immunity","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Cystic Fibrosis Foundation; Bill and Melinda Gates Foundation","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Innate immune system; Immunology; Biology; Chemokine; Immune system; CpG site; Acquired immune system; Toxoid; TLR9; Immunization; DNA methylation; Gene expression","score_opus":0.009804206835505489,"score_gpt":0.22054689245737324,"score_spread":0.21074268562186776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122489686","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993476,0.0044426215,0.00046183204,0.0009082306,0.0000905823,0.00033002463,0.00001637861,0.00005942141,0.00021496075],"genre_scores_gemma":[0.9984326,0.00054388505,0.0003901879,0.00017564597,0.0000148074105,0.000010056009,0.000030911444,0.000015726626,0.00038619223],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986324,0.00018465781,0.00053573697,0.00029213307,0.00004311945,0.0003119997],"domain_scores_gemma":[0.99893427,0.00018843706,0.00028834227,0.0003881368,0.0001646346,0.000036198424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042583016,0.00025219572,0.0005464738,0.00023515448,0.00017081677,0.000013373312,0.00017227473,0.0002888089,0.00007930773],"category_scores_gemma":[0.00018337936,0.00021720593,0.00005992621,0.00022005686,0.00004846123,0.0001756209,0.00012716885,0.00046192188,0.000025532778],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021729,0.00014488677,0.001003411,0.000032304713,0.00013227545,0.0000043663663,0.0007389685,0.000011506557,0.9815836,0.0014176273,0.00022532884,0.012532812],"study_design_scores_gemma":[0.0062796683,0.0012171805,0.58704406,0.00033142066,0.0001417072,0.00030759085,0.00031523168,0.00042407357,0.40062162,0.0007321763,0.002208789,0.00037646247],"about_ca_topic_score_codex":0.00013528719,"about_ca_topic_score_gemma":0.000018817054,"teacher_disagreement_score":0.5860407,"about_ca_system_score_codex":0.00002435037,"about_ca_system_score_gemma":0.00004280823,"threshold_uncertainty_score":0.8857401},"labels":[],"label_agreement":null},{"id":"W2122994961","doi":"10.1128/mcb.00087-10","title":"Zinc Finger Protein Gfi1 Controls the Endotoxin-Mediated Toll-Like Receptor Inflammatory Response by Antagonizing NF-κB p65","year":2010,"lang":"en","type":"article","venue":"Molecular and Cellular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft","keywords":"Biology; Transactivation; Proinflammatory cytokine; Tumor necrosis factor alpha; Innate immune system; Toll-like receptor; Transcription factor; NFKB1; Cell biology; Molecular biology; TLR4; Nuclear protein; Zinc finger; Signal transduction; Immunology; Immune system; Inflammation; Gene; Genetics","score_opus":0.0031358172196794165,"score_gpt":0.19264149083955917,"score_spread":0.18950567361987974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2122994961","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98968387,0.005979838,0.0006530563,0.0018020651,0.0007315065,0.00082243304,0.000036077097,0.000094157615,0.00019697548],"genre_scores_gemma":[0.99658376,0.00006523608,0.00006650389,0.0007744081,0.000040681207,0.00017459998,0.00044026307,0.000036741432,0.0018178335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99686867,0.0015271337,0.0004916901,0.00046703996,0.00005114906,0.0005943029],"domain_scores_gemma":[0.9987117,0.000380886,0.00021654852,0.00055372086,0.00008807512,0.000049085545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013299419,0.00033183512,0.00038750682,0.00012959262,0.00041201242,0.00004262303,0.00034845382,0.00072202313,0.0004197302],"category_scores_gemma":[0.000498595,0.00024445698,0.00014211144,0.00012240067,0.0006127952,0.00007905542,0.00015459026,0.0007975144,0.00044232176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015702934,0.00004517783,0.00024495184,0.00000950469,0.0001594956,0.000023106862,0.0002152738,2.6347436e-7,0.99375445,0.0008088088,0.0012658016,0.0019028782],"study_design_scores_gemma":[0.0012049404,0.00019598425,0.00008196284,0.000010354301,0.000020433672,0.00004714113,0.00006127921,0.000007549199,0.6680649,0.00006124803,0.33003572,0.00020853912],"about_ca_topic_score_codex":0.000040475043,"about_ca_topic_score_gemma":0.00000703558,"teacher_disagreement_score":0.3287699,"about_ca_system_score_codex":0.000021621738,"about_ca_system_score_gemma":0.000117476884,"threshold_uncertainty_score":0.99686664},"labels":[],"label_agreement":null},{"id":"W2123087827","doi":"10.1084/jem.20051229","title":"Nod1 acts as an intracellular receptor to stimulate chemokine production and neutrophil recruitment in vivo","year":2006,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"NOD1; Chemokine; Cell biology; Innate immune system; Biology; Tumor necrosis factor alpha; Proinflammatory cytokine; Immune system; Immunology; Inflammation; Pattern recognition receptor; NOD2","score_opus":0.021492507417701427,"score_gpt":0.2919707630830819,"score_spread":0.2704782556653805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123087827","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871862,0.0065437527,0.0000092971995,0.0050415443,0.0006841555,0.0003409519,3.6059166e-7,0.000006699326,0.00018701996],"genre_scores_gemma":[0.9985722,0.00021805086,0.000045160235,0.00016110225,0.00027727828,0.0000063115854,0.000005653532,0.000009424757,0.00070482405],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990352,0.00023671133,0.0004180619,0.00009457457,0.000064709806,0.0001507673],"domain_scores_gemma":[0.9995495,0.000044883433,0.00019245618,0.00013574531,0.000052557178,0.000024873967],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077523047,0.00011338113,0.000221437,0.00014759137,0.000075467826,0.0000044505277,0.000107749416,0.000063777654,0.0004051567],"category_scores_gemma":[0.00008260973,0.00006899812,0.000018621118,0.00010736811,0.00011804574,0.00014965127,0.00002921898,0.00018844783,0.00002308769],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022880954,0.00014414037,0.00004589597,0.0000030838753,0.00002354552,0.0000065988447,0.0026765224,0.00005120791,0.99236435,0.0000807702,0.0014905891,0.000825214],"study_design_scores_gemma":[0.0014724124,0.0022039323,0.0009859777,0.00014412416,0.000023255601,0.00039614318,0.0016009108,0.0000033956262,0.97992903,0.00004837789,0.013122739,0.00006968521],"about_ca_topic_score_codex":0.0001335466,"about_ca_topic_score_gemma":0.0000055695723,"teacher_disagreement_score":0.01243529,"about_ca_system_score_codex":0.000086465465,"about_ca_system_score_gemma":0.000020945916,"threshold_uncertainty_score":0.44361815},"labels":[],"label_agreement":null},{"id":"W2123947085","doi":"10.1128/iai.72.11.6455-6462.2004","title":"Role of Protein Tyrosine Kinase p53/56<i><sup>lyn</sup></i>in Diminished Lipopolysaccharide Priming of Formylmethionylleucyl- phenylalanine-Induced Superoxide Production in Human Newborn Neutrophils","year":2004,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"IWK Health Centre; Sick Kids Foundation; Canadian Institutes of Health Research; Abbott Laboratories","keywords":"LYN; Tyrosine; Kinase; Biology; Lipopolysaccharide; Proto-oncogene tyrosine-protein kinase Src; p38 mitogen-activated protein kinases; Tyrosine phosphorylation; Tyrosine kinase; Syk; Phosphorylation; Superoxide; Protein kinase A; Molecular biology; Biochemistry; Immunology; Signal transduction; Enzyme","score_opus":0.013038327634852437,"score_gpt":0.24435137216952627,"score_spread":0.23131304453467383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2123947085","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981204,0.00056436757,0.00003661897,0.00013821095,0.000121514066,0.00070373795,0.0000035279263,0.000046530244,0.00026508313],"genre_scores_gemma":[0.9995017,0.00014146781,0.000081712664,0.000014800575,0.000029470662,0.00006301788,0.000063954634,0.000019479621,0.00008436509],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99812186,0.0004469826,0.00080737646,0.00026150432,0.00006308143,0.00029921473],"domain_scores_gemma":[0.9991151,0.000052407027,0.00030733386,0.00036706057,0.0001373256,0.000020778007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008193166,0.00022707263,0.00044380085,0.00056545675,0.00018753229,0.000013387041,0.00011718551,0.00031045935,0.000038698487],"category_scores_gemma":[0.0003197711,0.00022698184,0.00010756947,0.0003818365,0.0001566896,0.0004016029,0.00008635597,0.00056676334,0.0000075030657],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005084514,0.00040829985,0.0037878987,0.00009023695,0.00004352448,0.0000010781787,0.0023499078,0.0002519104,0.98217565,0.0009224233,0.0000022399,0.009458376],"study_design_scores_gemma":[0.002464188,0.0005509164,0.062465504,0.00033597508,0.000026107644,0.000027181724,0.00070954754,0.000012527812,0.932313,0.0007265989,0.00018368372,0.00018475174],"about_ca_topic_score_codex":0.008800592,"about_ca_topic_score_gemma":0.00040231453,"teacher_disagreement_score":0.058677603,"about_ca_system_score_codex":0.00011464597,"about_ca_system_score_gemma":0.00011639764,"threshold_uncertainty_score":0.9977999},"labels":[],"label_agreement":null},{"id":"W2124032393","doi":"10.1084/jem.20060943","title":"Oxidative stress generated by hemorrhagic shock recruits Toll-like receptor 4 to the plasma membrane in macrophages","year":2006,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":198,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; St. Michael's Hospital","funders":"","keywords":"Oxidative stress; TLR4; Lipid raft; Cell biology; Lipopolysaccharide; Toll-like receptor; Biology; Innate immune system; Receptor; Chemistry; Immunology; Signal transduction; Biochemistry","score_opus":0.011285420418352805,"score_gpt":0.25841408076750566,"score_spread":0.24712866034915285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124032393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9743797,0.018647106,0.000029958843,0.005157219,0.0011149907,0.00028704965,0.000008599514,0.000008108045,0.00036726458],"genre_scores_gemma":[0.995617,0.00026677205,0.000031497173,0.0004913989,0.0001960688,0.00001014792,0.000047790927,0.000013511354,0.0033258267],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983308,0.00063352997,0.0005900998,0.00010080618,0.000107563,0.00023721973],"domain_scores_gemma":[0.99921113,0.00021826889,0.00028951775,0.00018063765,0.00007811049,0.000022339009],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007841786,0.00016917083,0.0003128327,0.00013165832,0.0001531045,0.000008327451,0.00035802263,0.000090408146,0.000860323],"category_scores_gemma":[0.00007182608,0.00008315686,0.000043517324,0.0002377077,0.0001826422,0.000101703125,0.000053349566,0.00033624904,0.00010112759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001597521,0.00010588072,0.000024518173,0.0000026138994,0.000056331268,0.000011520751,0.0026209746,0.00005927931,0.92712307,0.00002290497,0.067686476,0.00068890344],"study_design_scores_gemma":[0.0022601944,0.00096797646,0.0001654453,0.0001224014,0.00002804104,0.00030261138,0.005269573,0.000012762294,0.97132766,0.0000039692595,0.01945049,0.00008886716],"about_ca_topic_score_codex":0.00022459195,"about_ca_topic_score_gemma":0.000023913688,"teacher_disagreement_score":0.048235986,"about_ca_system_score_codex":0.00010092358,"about_ca_system_score_gemma":0.000033717977,"threshold_uncertainty_score":0.94199336},"labels":[],"label_agreement":null},{"id":"W2124202577","doi":"10.3945/jn.109.109645","title":"A Bovine Whey Protein Extract Stimulates Human Neutrophils to Generate Bioactive IL-1Ra through a NF-κB- and MAPK-Dependent Mechanism","year":2009,"lang":"en","type":"article","venue":"Journal of Nutrition","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"p38 mitogen-activated protein kinases; Tumor necrosis factor alpha; MAPK/ERK pathway; Chemotaxis; Phagocytosis; Degranulation; Kinase; Protein kinase A; Interleukin; Stimulation; Chemistry; Cytokine; Receptor; Cell biology; Immunology; Biology; Biochemistry; Endocrinology","score_opus":0.015407117691638625,"score_gpt":0.2645161705551759,"score_spread":0.24910905286353727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124202577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99340373,0.002000668,0.0015930148,0.0022373667,0.00016970733,0.00050253497,0.000011328808,0.000019455763,0.000062215],"genre_scores_gemma":[0.9980642,0.00033236254,0.0010474827,0.00018286887,0.00015057299,0.000012178352,0.000022995417,0.0000109683215,0.00017637019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987722,0.0002741475,0.00049884774,0.00015728286,0.00007194421,0.00022556972],"domain_scores_gemma":[0.99924,0.000033403656,0.00034859747,0.000121096535,0.00022471257,0.000032192263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004108805,0.00016545987,0.00031379625,0.0002316786,0.00018856222,0.00004841539,0.000108551576,0.00019404136,0.00006980569],"category_scores_gemma":[0.00004813827,0.0001417831,0.00009590871,0.00009979413,0.00003055265,0.00048624375,0.000021385747,0.00031938087,0.000037245336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018755519,0.00040313764,0.000003190396,0.00002290671,0.000084409105,0.00004282294,0.0002984334,0.000008036046,0.99330205,0.0017993953,0.0003280829,0.0018319737],"study_design_scores_gemma":[0.0029239135,0.0038283546,0.0013844605,0.000275446,0.00005745348,0.0005276975,0.00015742175,0.0000057414904,0.9752539,0.013006356,0.0024162792,0.00016298558],"about_ca_topic_score_codex":0.000015369224,"about_ca_topic_score_gemma":0.0000019034269,"teacher_disagreement_score":0.01804817,"about_ca_system_score_codex":0.000081995204,"about_ca_system_score_gemma":0.00003353273,"threshold_uncertainty_score":0.57817465},"labels":[],"label_agreement":null},{"id":"W2124224077","doi":"10.1101/gad.1467606","title":"Endotoxic shock in <i>AUF1</i> knockout mice mediated by failure to degrade proinflammatory cytokine mRNAs","year":2006,"lang":"en","type":"article","venue":"Genes & Development","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":197,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Center for AIDS Research, University of Washington; York University","keywords":"Biology; Proinflammatory cytokine; Cell biology; Cytokine; Knockout mouse; Context (archaeology); Shock (circulatory); Immunology; Inflammation; Genetics; Gene; Internal medicine","score_opus":0.004704736672963363,"score_gpt":0.19431535513425516,"score_spread":0.1896106184612918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124224077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917093,0.0056565497,0.00012915583,0.000924598,0.0002986503,0.00066423905,0.000013486383,0.00011864298,0.0004854123],"genre_scores_gemma":[0.9883528,0.00015028493,0.0016859272,0.000433786,0.000060734394,0.00040862669,0.0012459687,0.000050704566,0.0076112207],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980124,0.00018315905,0.0007061527,0.00039626274,0.00009022134,0.000611774],"domain_scores_gemma":[0.99944526,0.00008047812,0.00013311562,0.00023955676,0.00006558457,0.00003602196],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003682956,0.00030380435,0.00032808175,0.00027995964,0.00016333179,0.00002110776,0.0002814102,0.00027886857,0.00018955328],"category_scores_gemma":[0.00004168758,0.00028822292,0.000054065637,0.00030999334,0.00005662196,0.00011438674,0.000115032875,0.00021876681,0.0020334136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017211967,0.000083766456,0.0021001247,0.000020972468,0.00005301796,0.00001518798,0.0006979288,0.000019765526,0.9633883,0.0000506745,0.023533328,0.009864764],"study_design_scores_gemma":[0.0007097674,0.000024796333,0.008840684,0.000032056007,0.0000055749865,0.000024706185,0.00011018084,6.958313e-7,0.5461987,0.000009002242,0.4438328,0.0002109939],"about_ca_topic_score_codex":0.00010362336,"about_ca_topic_score_gemma":0.0005565405,"teacher_disagreement_score":0.4202995,"about_ca_system_score_codex":0.00024407041,"about_ca_system_score_gemma":0.0002960246,"threshold_uncertainty_score":0.99995697},"labels":[],"label_agreement":null},{"id":"W2124371255","doi":"10.1016/j.cell.2006.01.034","title":"Anti-Immunology: Evasion of the Host Immune System by Bacterial and Viral Pathogens","year":2006,"lang":"en","type":"review","venue":"Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":898,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Biology; Evasion (ethics); Immune system; Host (biology); Immunology; Virology; Microbiology; Immunity; Ecology","score_opus":0.0086299476846329,"score_gpt":0.21753184277870474,"score_spread":0.20890189509407184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124371255","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.018034477,0.9785112,0.0000036413212,0.000007494679,0.001835977,0.00065378816,0.00018632422,0.00003557557,0.0007314817],"genre_scores_gemma":[0.007827478,0.9878039,0.00000403833,0.0000028292263,0.000050456016,0.000031612217,0.0009763744,0.000039916566,0.0032633909],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99757564,0.00095356867,0.00083384605,0.00030125948,0.00003688209,0.00029881866],"domain_scores_gemma":[0.9984265,0.0001407468,0.0007846374,0.0005908256,0.00004950966,0.000007756241],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003359219,0.0003660079,0.0013618997,0.000108196924,0.0001993932,0.000016180922,0.0003857647,0.00093738275,0.000062598585],"category_scores_gemma":[0.000024204655,0.00023656384,0.00039994478,0.00012491412,0.00027663275,0.00005378832,0.00024194048,0.00043420325,0.0002077707],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005378805,0.00006649455,0.0000032880016,0.0056161955,0.00020832065,0.000002562018,0.000049697144,3.6419813e-8,0.9292016,0.000070361006,0.0016080508,0.063119575],"study_design_scores_gemma":[0.0005133241,0.00007393719,0.00009668004,0.0024588348,0.00048783998,0.000102898,0.000026997486,1.1807479e-7,0.09900781,7.651315e-7,0.89701205,0.00021872908],"about_ca_topic_score_codex":0.00006355136,"about_ca_topic_score_gemma":8.320706e-7,"teacher_disagreement_score":0.89540404,"about_ca_system_score_codex":0.000068122215,"about_ca_system_score_gemma":0.0001377595,"threshold_uncertainty_score":0.96467936},"labels":[],"label_agreement":null},{"id":"W2124424618","doi":"10.1124/jpet.106.113639","title":"Phosphatidylinositol 3′-Kinase Is a Critical Mediator of Interferon-γ-Induced Increases in Enteric Epithelial Permeability","year":2006,"lang":"en","type":"article","venue":"Journal of Pharmacology and Experimental Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Paracellular transport; Wortmannin; Barrier function; Protein kinase C; Transcytosis; Epithelium; Phosphatidylinositol; Transcellular; Intracellular; Chemistry; Ionomycin; Cell biology; Tight junction; Apical membrane; Biology; Molecular biology; Biochemistry; Biophysics; Signal transduction; Endocytosis; Permeability (electromagnetism); Cell; Membrane","score_opus":0.016044840398866955,"score_gpt":0.3213328915839945,"score_spread":0.30528805118512753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124424618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99088293,0.0076835128,0.0000070821047,0.00037918816,0.0008720658,0.00011267753,0.000009302269,0.0000046199507,0.000048620223],"genre_scores_gemma":[0.99933106,0.00011648895,0.000037243703,0.00039736857,0.00007489504,0.0000044615235,0.0000023297964,0.000008255002,0.000027905508],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862796,0.000382591,0.00063003664,0.0001163307,0.00005136026,0.00019173957],"domain_scores_gemma":[0.999409,0.00016791369,0.00025479434,0.00006844845,0.00008182853,0.000018021858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025229785,0.00014006214,0.000340191,0.00012919394,0.000058464906,0.0000053245362,0.00013892927,0.00018909763,0.00047651533],"category_scores_gemma":[0.000017928263,0.00011941131,0.00011628212,0.0000869491,0.00028253134,0.00015233929,0.0000623096,0.00027439476,0.000005599572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029335185,0.0010491103,0.007826378,0.000020583679,0.00009862352,0.00001031458,0.00054979057,9.797454e-7,0.98678553,0.00007825101,0.00020863743,0.00043827965],"study_design_scores_gemma":[0.003268769,0.00084369077,0.009340329,0.000037512193,0.00007611127,0.00013034191,0.00048760552,0.000018159764,0.9848313,0.000086044616,0.0007801656,0.00009996987],"about_ca_topic_score_codex":0.00004611222,"about_ca_topic_score_gemma":0.0000014876505,"teacher_disagreement_score":0.008448121,"about_ca_system_score_codex":0.000083527404,"about_ca_system_score_gemma":0.0000991084,"threshold_uncertainty_score":0.52175087},"labels":[],"label_agreement":null},{"id":"W2124645471","doi":"10.1093/cvr/cvm100","title":"Disruption of phospholipase C 1 signalling attenuates cardiac tumor necrosis factor-  expression and improves myocardial function during endotoxemia","year":2007,"lang":"en","type":"article","venue":"Cardiovascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Tumor necrosis factor alpha; Phospholipase C; Biology; Endocrinology; Signal transduction; Internal medicine; Gene knockdown; Cancer research; Immunology; Cell biology; Medicine; Cell culture","score_opus":0.02304278883768103,"score_gpt":0.27710717392109735,"score_spread":0.25406438508341633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2124645471","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97814757,0.020008363,0.0005856321,0.000010775863,0.00042174797,0.00054602354,0.000008865214,0.000049469752,0.00022154988],"genre_scores_gemma":[0.9986517,0.0008199617,0.000030608753,0.0000034041866,0.00013275482,0.000048873935,0.00006416564,0.000030113277,0.0002184194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974866,0.0007517798,0.00041604743,0.00043739183,0.00029001714,0.00061817473],"domain_scores_gemma":[0.9986731,0.0003390759,0.00008941722,0.0004942917,0.00035159884,0.000052554486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003504987,0.0001956451,0.0004992135,0.00036550834,0.00045612536,0.000040124753,0.00014996415,0.00025183638,0.000042908378],"category_scores_gemma":[0.00034892227,0.00017746618,0.0005652244,0.00030712108,0.00030885995,0.000268529,0.00019613595,0.0005467054,0.00006413339],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010892848,0.000024936195,0.001708026,0.00011035351,0.0007682738,0.00001127701,0.00044983893,0.00001629396,0.9786352,0.000034067725,0.000045158875,0.017107308],"study_design_scores_gemma":[0.0011103314,0.00013523498,0.063558966,0.000093012415,0.00009391237,0.000022533388,0.0006093656,0.000003717269,0.9306412,0.000038340848,0.0035263086,0.00016709631],"about_ca_topic_score_codex":0.00019989896,"about_ca_topic_score_gemma":0.0000011962829,"teacher_disagreement_score":0.061850935,"about_ca_system_score_codex":0.000103201186,"about_ca_system_score_gemma":0.000059750626,"threshold_uncertainty_score":0.72368604},"labels":[],"label_agreement":null},{"id":"W2125377218","doi":"10.1139/cjm-2013-0490","title":"The sugar 3-deoxy-<scp>d</scp>-<i>manno</i>-oct-2-ulosonic acid (Kdo) as a characteristic component of bacterial endotoxin — a review of its biosynthesis, function, and placement in the lipopolysaccharide core","year":2013,"lang":"en","type":"review","venue":"Canadian Journal of Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Lipid A; Biosynthesis; Lipopolysaccharide; Glucosamine; Chemistry; Sugar; Bacteria; Biochemistry; Function (biology); Microbiology; Stereochemistry; Biology; Enzyme; Cell biology; Immunology","score_opus":0.023008358052746012,"score_gpt":0.24905098311638077,"score_spread":0.22604262506363476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125377218","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031474467,0.96538,0.0000019347358,0.0002463561,0.0013070774,0.0012901984,0.00025279916,0.0000031790298,0.00004395777],"genre_scores_gemma":[0.0050649727,0.9939218,0.0000056138006,0.00022253685,0.0001047078,0.00006303421,0.00033568405,0.000031461757,0.0002501606],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9946906,0.0020797006,0.0022941893,0.00027901545,0.000051130035,0.00060535857],"domain_scores_gemma":[0.99463314,0.0016192783,0.002839824,0.00047988235,0.00034326434,0.00008461314],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022881331,0.00048274518,0.002148844,0.0005316,0.00022089983,0.000029515058,0.0009302479,0.0006074198,0.00054138416],"category_scores_gemma":[0.001372489,0.00028493904,0.00048539648,0.00022111252,0.0005707318,0.00008800776,0.000073964016,0.0009093803,0.00014842486],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034674953,0.00016525247,0.000036481033,0.02873347,0.0031719387,0.00008731202,0.0012252933,2.1102089e-7,0.7994218,0.0015194733,0.033481378,0.13181068],"study_design_scores_gemma":[0.0005839686,0.0005673817,0.000053186854,0.020876128,0.0008081772,0.0030344687,0.00021800947,5.390659e-8,0.0066982666,0.000017415883,0.96700037,0.00014260174],"about_ca_topic_score_codex":0.00043790977,"about_ca_topic_score_gemma":0.0008572773,"teacher_disagreement_score":0.93351895,"about_ca_system_score_codex":0.00018533763,"about_ca_system_score_gemma":0.002266999,"threshold_uncertainty_score":0.9999603},"labels":[],"label_agreement":null},{"id":"W2125760444","doi":"10.1164/rccm.200708-1261oc","title":"Lung Inflammation Induced by Lipoteichoic Acid or Lipopolysaccharide in Humans","year":2008,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lipoteichoic acid; Bronchoalveolar lavage; TLR4; Lipopolysaccharide; TLR2; Inflammation; Medicine; Immunology; Cytokine; Proinflammatory cytokine; In vivo; Microbiology; Lung; Biology; Staphylococcus aureus; Bacteria; Internal medicine","score_opus":0.018255069898202483,"score_gpt":0.29595677510590707,"score_spread":0.2777017052077046,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2125760444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98661685,0.01146826,0.00016710348,0.0012571306,0.00026812305,0.00008040281,0.0000018134411,0.000011707278,0.00012859542],"genre_scores_gemma":[0.9988546,0.00026826942,0.000021155356,0.00062560994,0.00017527373,0.000004709979,0.00000533401,0.000011258223,0.000033817552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983625,0.00045016318,0.0006864614,0.0001463441,0.000106472915,0.00024808763],"domain_scores_gemma":[0.99894476,0.00037530545,0.00023072695,0.0001346982,0.00025087257,0.00006360874],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049153896,0.00015493511,0.00047936093,0.00029518298,0.00015539702,0.0000061371275,0.00013520548,0.000113466755,0.00019855885],"category_scores_gemma":[0.0012356063,0.00010932936,0.000050554423,0.000200752,0.0008853259,0.00024337707,0.000025049278,0.0005154158,0.000008669789],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011198561,0.000027327993,0.0044743414,0.000039037597,0.00003713378,0.00011830448,0.0037579776,3.7894324e-7,0.9408544,0.0002169493,0.0006637309,0.048690576],"study_design_scores_gemma":[0.008302565,0.01985769,0.038921513,0.00096285366,0.0002656958,0.0013257253,0.028880281,0.0000036664287,0.85096276,0.000096714546,0.04975058,0.0006699533],"about_ca_topic_score_codex":0.000056471617,"about_ca_topic_score_gemma":0.0000146151815,"teacher_disagreement_score":0.08989162,"about_ca_system_score_codex":0.00006724077,"about_ca_system_score_gemma":0.00014765855,"threshold_uncertainty_score":0.4458322},"labels":[],"label_agreement":null},{"id":"W2126479453","doi":"10.1189/jlb.0809546","title":"Granulocyte-macrophage colony-stimulating factor (GM-CSF): a chemoattractive agent for murine leukocytes in vivo","year":2011,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Kuwait University; Canadian Institutes of Health Research; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Australasian Society of Clinical Immunology and Allergy","keywords":"In vivo; Intravital microscopy; Inflammation; Granulocyte; Biology; In vitro; Immunology; Chemotaxis; Granulocyte macrophage colony-stimulating factor; N-Formylmethionine leucyl-phenylalanine; Molecular biology; Cytokine; Neutrophile; Receptor; Biochemistry","score_opus":0.043864832525031774,"score_gpt":0.287000142973544,"score_spread":0.24313531044851222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126479453","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99373436,0.0025326922,0.0011887494,0.00011433145,0.0012152011,0.0004537316,0.000023926326,0.000023584014,0.0007134455],"genre_scores_gemma":[0.9977703,0.00026731618,0.00094849075,0.00014398956,0.00013085993,0.00002765366,0.000020795876,0.000027173994,0.0006633863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976182,0.000394882,0.0011280379,0.00026477524,0.000046762274,0.0005473415],"domain_scores_gemma":[0.99783975,0.000617529,0.00096997805,0.00021365577,0.00032005092,0.000039034774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00080032414,0.00029053105,0.00075910875,0.00044890473,0.00014286081,0.000012409177,0.00035323924,0.00048922584,0.0007371374],"category_scores_gemma":[0.0006170334,0.00023700944,0.00030921365,0.00016573329,0.00020673321,0.00028754855,0.000075401105,0.00054820796,0.00006049132],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005597486,0.00022749852,0.0069397883,0.00003689243,0.00028632718,0.000048324036,0.00158934,0.000018024457,0.97739124,0.00026403012,0.0005065874,0.007094454],"study_design_scores_gemma":[0.0054791444,0.002099476,0.030613007,0.00008303841,0.00006526458,0.00035761547,0.0002887731,0.00004070227,0.9322882,0.00032490626,0.028079968,0.00027989876],"about_ca_topic_score_codex":0.00012253181,"about_ca_topic_score_gemma":0.00003659385,"teacher_disagreement_score":0.04510304,"about_ca_system_score_codex":0.00028481838,"about_ca_system_score_gemma":0.00023724478,"threshold_uncertainty_score":0.96649647},"labels":[],"label_agreement":null},{"id":"W2126739732","doi":"10.1371/journal.pone.0055876","title":"Kinetics of IL-7 and IL-15 Levels after Allogeneic Peripheral Blood Stem Cell Transplantation following Nonmyeloablative Conditioning","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fonds De La Recherche Scientifique - FNRS; Fondation contre le Cancer; Terry Fox Foundation","keywords":"Transplantation; Medicine; Internal medicine; Conditioning; Stem cell; Immunology; Andrology; Gastroenterology; Biology","score_opus":0.016533311297537476,"score_gpt":0.198041168418813,"score_spread":0.18150785712127554,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2126739732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977683,0.0011844644,0.00023927292,0.00006164518,0.00005096734,0.00030453614,0.000045541594,0.00002311436,0.00032219413],"genre_scores_gemma":[0.9980528,0.00011074875,0.00043306538,0.00003946436,0.000012995741,0.000059557755,0.00010041153,0.000013303014,0.0011777019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992129,0.00014086094,0.0002746527,0.00014851062,0.000045689943,0.00017735334],"domain_scores_gemma":[0.99960154,0.00009396881,0.000108545755,0.00010608022,0.0000765184,0.000013321824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007357824,0.00012008607,0.00022361797,0.000071849245,0.00006598787,0.000014712537,0.000055147328,0.0001470218,0.0004720918],"category_scores_gemma":[0.000007922041,0.00011685202,0.000051049807,0.000055673805,0.00007062994,0.00020083872,0.000016047117,0.000112322195,0.00008002821],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000992938,0.00021801022,0.0026798917,0.00009374812,0.00037113545,0.0000035467415,0.0026263902,0.0000043287905,0.99341196,0.000020966398,0.000006125917,0.00046462307],"study_design_scores_gemma":[0.001153166,0.00025556047,0.06355472,0.00012570934,0.0003092388,0.000007313386,0.00028186658,0.000011009131,0.934113,0.000037007525,0.000024297744,0.0001270846],"about_ca_topic_score_codex":0.000020462938,"about_ca_topic_score_gemma":0.000004192934,"teacher_disagreement_score":0.060874823,"about_ca_system_score_codex":0.0000122171605,"about_ca_system_score_gemma":0.000012097671,"threshold_uncertainty_score":0.5169074},"labels":[],"label_agreement":null},{"id":"W2127088766","doi":"10.1016/j.jim.2008.04.013","title":"Polychromatic flow cytometric high-throughput assay to analyze the innate immune response to Toll-like receptor stimulation","year":2008,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":48,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; Canadian Child Health Clinician Scientist Program; National Center for Research Resources; Burroughs Wellcome Fund","keywords":"Innate immune system; Flow cytometry; TLR3; Toll-like receptor; Immune system; TLR7; Immunology; Acquired immune system; Biology; Cytometry; TLR9","score_opus":0.02966885487559169,"score_gpt":0.3344316338678644,"score_spread":0.3047627789922727,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127088766","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8787433,0.005449942,0.10892133,0.00405472,0.0022519017,0.00046605896,0.0000055406354,0.000048290935,0.000058909904],"genre_scores_gemma":[0.8161453,0.0005176513,0.18004042,0.0007802236,0.00012678493,0.000031342068,0.000014615096,0.000035263853,0.0023083836],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9883417,0.008928706,0.0016260558,0.00031402946,0.00021242454,0.0005770715],"domain_scores_gemma":[0.99355817,0.0043593487,0.00079600065,0.0006717023,0.00053993246,0.00007482694],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.010381211,0.00035790168,0.00091799174,0.0012068574,0.0005882633,0.00004978969,0.0009015598,0.00046713898,0.00073165086],"category_scores_gemma":[0.012259654,0.00022057568,0.00039831066,0.002158848,0.00024200822,0.0002572501,0.0002994829,0.0009399727,0.00072069763],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010526716,0.00016521059,0.00010353002,0.000004879804,0.0004212639,0.000028689154,0.0008074289,0.0008256362,0.91574836,0.00004744251,0.0017974841,0.069523364],"study_design_scores_gemma":[0.0029416792,0.0055077258,0.32352042,0.00014554738,0.00015783632,0.0014490994,0.00038396617,0.00006283799,0.5910694,0.00027533007,0.07395425,0.00053191953],"about_ca_topic_score_codex":0.000026488444,"about_ca_topic_score_gemma":3.8945848e-7,"teacher_disagreement_score":0.324679,"about_ca_system_score_codex":0.00027110166,"about_ca_system_score_gemma":0.00020326555,"threshold_uncertainty_score":0.9960605},"labels":[],"label_agreement":null},{"id":"W2127094590","doi":"10.1111/iji.12175","title":"The Pekin duck programmed death‐ligand 1: <scp>cDNA</scp> cloning, genomic structure, molecular characterization and <scp>mRNA</scp> expression analysis","year":2014,"lang":"en","type":"article","venue":"International Journal of Immunogenetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Liver Foundation","keywords":"Complementary DNA; Biology; Coding region; Molecular biology; Peptide sequence; Exon; Conserved sequence; Messenger RNA; Amino acid; Gene; Genetics","score_opus":0.005178539084195292,"score_gpt":0.22569110256292127,"score_spread":0.22051256347872597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127094590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9838743,0.006795579,0.0077635576,0.00014503999,0.0011538803,0.0001682357,0.000018625193,0.000016839478,0.00006395128],"genre_scores_gemma":[0.99618393,0.002024963,0.0004786943,0.00009027519,0.00018529483,0.000006353509,0.00021463678,0.000028443383,0.00078742014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978769,0.00044354855,0.00088754116,0.00022286944,0.00023576945,0.0003333978],"domain_scores_gemma":[0.997313,0.00052172376,0.0011313078,0.00029419572,0.0006956334,0.000044130236],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007124569,0.00025655847,0.0003593017,0.00041036628,0.00028691787,0.00024640048,0.0006855216,0.0002524978,0.0000120316645],"category_scores_gemma":[0.0008480775,0.00019238102,0.00025030714,0.00020237832,0.00015894623,0.00018407266,0.00017495982,0.00038861207,0.00001674485],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006679942,0.000039743732,0.012691835,0.0000049084106,0.0016918189,0.000008812928,0.00054107746,0.00017900033,0.97145987,0.00028221332,0.000110171015,0.012923734],"study_design_scores_gemma":[0.0011610655,0.00020865822,0.1580251,0.000050221654,0.0003694663,0.00021249431,0.00020797778,0.00017305688,0.7827321,0.00022114663,0.056582622,0.000056090135],"about_ca_topic_score_codex":0.000014741591,"about_ca_topic_score_gemma":0.000004975938,"teacher_disagreement_score":0.18872778,"about_ca_system_score_codex":0.00007896042,"about_ca_system_score_gemma":0.00009427551,"threshold_uncertainty_score":0.78450704},"labels":[],"label_agreement":null},{"id":"W2127139510","doi":"10.1186/1479-5876-9-92","title":"Trauma is danger","year":2011,"lang":"en","type":"review","venue":"Journal of Translational Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Armed Forces; University of Toronto","funders":"Office of Naval Research; U.S. Navy; Bureau of Medicine and Surgery; Henry M. Jackson Foundation","keywords":"Context (archaeology); Immune system; Effector; Medicine; Innate immune system; Inflammatory response; Immunology; Intensive care medicine; Function (biology); Neuroscience; Bioinformatics; Inflammation; Biology","score_opus":0.07562408277511727,"score_gpt":0.3372134780862116,"score_spread":0.2615893953110943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127139510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000012705939,0.9954463,0.00024339426,0.00055837916,0.0013894262,0.00016687266,0.0000118681155,0.0000070803317,0.002163949],"genre_scores_gemma":[0.00005649466,0.99742085,0.000111753965,0.00009061207,0.00044726726,0.000003955652,0.00010794263,0.000023523397,0.0017376089],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99799156,0.00028374113,0.0013475465,0.00011907365,0.00009262633,0.00016544835],"domain_scores_gemma":[0.99827904,0.00032620013,0.001013105,0.00015268188,0.00020247347,0.000026530899],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00072168483,0.0002550611,0.0013883817,0.00049652724,0.000060143295,0.0000032937799,0.00028121323,0.0004432949,0.005560087],"category_scores_gemma":[0.00007467616,0.00015695355,0.0005089531,0.00016294116,0.00015877646,0.00012870456,0.000007004064,0.0006877414,0.0003079462],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100443605,0.000034706518,7.2983147e-7,0.0011343663,0.0005964025,0.000013550656,0.00056534744,5.809173e-8,0.00008637177,0.0003374575,0.00862114,0.9885094],"study_design_scores_gemma":[0.0008897118,0.0002965704,0.000024670713,0.0068957927,0.0013955388,0.0016666873,0.000016612408,1.07824825e-7,0.00007778943,0.0002200183,0.98838204,0.00013444452],"about_ca_topic_score_codex":0.000004724463,"about_ca_topic_score_gemma":4.5024592e-7,"teacher_disagreement_score":0.988375,"about_ca_system_score_codex":0.000028570006,"about_ca_system_score_gemma":0.0002417295,"threshold_uncertainty_score":0.995349},"labels":[],"label_agreement":null},{"id":"W2127163051","doi":"10.4049/jimmunol.173.11.6890","title":"Viral Activation of Macrophages through TLR-Dependent and -Independent Pathways","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Biology; Cell biology; Signal transduction; Signal transducing adaptor protein; Cytokine; Interferon; Cell culture; Toll-like receptor; Innate immune system; Immune system; Virology; Immunology","score_opus":0.011587685254115524,"score_gpt":0.2283656725718418,"score_spread":0.21677798731772627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127163051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987586,0.009191509,0.0015891015,0.00080427196,0.00047547146,0.00011256114,0.0000021327048,0.00000892745,0.00022997744],"genre_scores_gemma":[0.99748087,0.0021797866,0.00008587756,0.00007031072,0.000029739647,0.0000014258883,0.0000037119692,0.000009709376,0.00013859561],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987038,0.00038520395,0.00057166064,0.00007760604,0.00006196053,0.00019981072],"domain_scores_gemma":[0.99876,0.00018605239,0.00068259693,0.00020150143,0.00016298973,0.0000068951404],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068062055,0.00012877073,0.00030492333,0.00012166463,0.00014432044,0.0000068413906,0.00026994114,0.00019734526,0.00008657248],"category_scores_gemma":[0.000117290125,0.00008311853,0.00007997465,0.00007563597,0.0003005727,0.00025676342,0.00009364358,0.00042986774,0.000034862373],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001370534,0.00007986419,0.000048498605,0.00000838444,0.00031941285,0.0000056726008,0.0028882043,0.00008932128,0.9873946,0.0034948683,0.000038289283,0.0042624027],"study_design_scores_gemma":[0.0025522541,0.0009541746,0.010122964,0.00005408522,0.00007235156,0.0012807351,0.0015571526,3.517426e-7,0.9777789,0.0046929047,0.0008515741,0.0000825605],"about_ca_topic_score_codex":0.000101138336,"about_ca_topic_score_gemma":0.0000029995215,"teacher_disagreement_score":0.010074466,"about_ca_system_score_codex":0.00006397583,"about_ca_system_score_gemma":0.00011080185,"threshold_uncertainty_score":0.33894753},"labels":[],"label_agreement":null},{"id":"W2127978413","doi":"10.3389/fimmu.2013.00347","title":"Evolving Bacterial Envelopes and Plasticity of TLR2-Dependent Responses: Basic Research and Translational Opportunities","year":2013,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; TLR2; Pattern recognition receptor; Immune system; Innate immune system; Acquired immune system; Toll-like receptor; Cell biology; Receptor; TLR4; Computational biology; Microbiology; Genetics","score_opus":0.0935884581054131,"score_gpt":0.319706340874862,"score_spread":0.22611788276944889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2127978413","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013942497,0.98341376,0.00010057595,0.00006415644,0.0013257554,0.00080100674,0.00010184826,0.000020698753,0.00022967954],"genre_scores_gemma":[0.0011529488,0.9956198,0.00039016895,0.0000037346924,0.00003621424,0.00016480344,0.00033997564,0.000036782072,0.0022556013],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99534184,0.002496933,0.00105503,0.0004789368,0.00008437238,0.0005428675],"domain_scores_gemma":[0.9977136,0.0014472263,0.00035922395,0.00027996156,0.00017735857,0.000022595117],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012992362,0.00038211647,0.0016454548,0.0014977978,0.00020921575,0.000037594153,0.00033646778,0.0011337792,0.00041776034],"category_scores_gemma":[0.00049591385,0.00034370876,0.00010471291,0.00020243617,0.001592696,0.00024236923,0.00024993165,0.0010443829,0.00002987401],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012685185,0.00011075212,0.00019393269,0.0029862237,0.0009980419,0.000019177109,0.001117784,9.272622e-8,0.0043357476,0.00111324,0.0028149998,0.9850415],"study_design_scores_gemma":[0.001373996,0.00043894167,0.0009767642,0.0032477677,0.0001704666,0.00025717076,0.0010601815,0.0000025288837,0.0008484695,0.00062587496,0.9905751,0.00042276594],"about_ca_topic_score_codex":0.000112976806,"about_ca_topic_score_gemma":0.000011389415,"teacher_disagreement_score":0.98776007,"about_ca_system_score_codex":0.0000828712,"about_ca_system_score_gemma":0.0006241712,"threshold_uncertainty_score":0.9999015},"labels":[],"label_agreement":null},{"id":"W2128075161","doi":"10.1126/scisignal.2000934","title":"TPL-2–Mediated Activation of MAPK Downstream of TLR4 Signaling Is Coupled to Arginine Availability","year":2010,"lang":"en","type":"article","venue":"Science Signaling","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Cancer Research UK","keywords":"MAPK/ERK pathway; Cell biology; Downstream (manufacturing); TLR4; Arginine; Signal transduction; Chemistry; Biology; Biochemistry; Amino acid; Business","score_opus":0.009894798736706133,"score_gpt":0.2501374144859937,"score_spread":0.24024261574928757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128075161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980614,0.000035002347,0.0007080884,0.0002217748,0.00042999967,0.00026189277,0.000009424108,0.000032739477,0.0002396348],"genre_scores_gemma":[0.9990511,0.000002430498,0.00067183125,0.00007740593,0.000020103458,0.000008074804,0.000023522101,0.000007033714,0.00013851064],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986022,0.00007333287,0.00054219767,0.00031522886,0.0001459602,0.0003210647],"domain_scores_gemma":[0.9984804,0.0003110263,0.00031300413,0.00036242083,0.0004990729,0.000034110304],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018268428,0.0001303908,0.00026738373,0.0003565047,0.00019624333,0.0000151492,0.00037642912,0.00014985575,0.0013746266],"category_scores_gemma":[0.0011922418,0.00011559019,0.00006862961,0.0008937811,0.0006327429,0.0003171024,0.000079949394,0.00025226158,0.00014870384],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018528172,0.000056144912,0.0012071717,0.00001970379,0.000016358472,1.6429196e-7,0.0012890332,0.00011759659,0.9955405,0.0001535535,0.000040034316,0.0013744495],"study_design_scores_gemma":[0.0004290646,0.00014538335,0.003655063,0.00006092012,0.000012036765,0.0000026972737,0.0003330946,0.00026989318,0.9944473,0.000096423755,0.0004297814,0.000118322976],"about_ca_topic_score_codex":0.00018154141,"about_ca_topic_score_gemma":0.0000038533767,"teacher_disagreement_score":0.0024478913,"about_ca_system_score_codex":0.000030820447,"about_ca_system_score_gemma":0.00032048754,"threshold_uncertainty_score":0.99953824},"labels":[],"label_agreement":null},{"id":"W2128814992","doi":"10.1083/jcb.201111136","title":"T granules in human platelets function in TLR9 organization and signaling","year":2012,"lang":"en","type":"article","venue":"The Journal of Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":192,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"National Heart, Lung, and Blood Institute","keywords":"TLR9; Cell biology; Biology; Toll-Like Receptor 9; Platelet; Receptor; Intracellular; Innate immune system; Compartment (ship); Inflammation; Platelet activation; Signal transduction; Immune system; Immunology; Gene; Biochemistry; Gene expression","score_opus":0.008072085934878754,"score_gpt":0.21583967732710263,"score_spread":0.20776759139222387,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2128814992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953155,0.003904037,0.00024244242,0.00007003982,0.00028749497,0.00005112446,2.4259757e-7,0.000003144795,0.00012596408],"genre_scores_gemma":[0.9995057,0.00034059634,0.000009035582,0.000040846546,0.00004340602,3.4279168e-7,0.000010575303,0.0000046291466,0.00004489592],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990198,0.00047850754,0.00030625626,0.000035491863,0.000010822143,0.00014913382],"domain_scores_gemma":[0.9995494,0.00015648625,0.00019416334,0.000050093804,0.000043057295,0.0000068233608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009936015,0.00006072355,0.00013979494,0.00017133466,0.00006148414,0.0000028251043,0.00006978811,0.0001377061,0.000099835175],"category_scores_gemma":[0.00005561163,0.00003959404,0.000014271851,0.00011081389,0.00006285515,0.00011533247,0.000020475363,0.00022428451,0.000019005383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021140242,0.000042421016,0.011155772,0.000004109944,0.000011197377,6.488881e-7,0.0010793229,0.000018010916,0.98584896,0.00027775296,0.00001596765,0.0013344333],"study_design_scores_gemma":[0.0010699178,0.00023980081,0.041302048,0.00001735605,0.000020716312,0.00013902342,0.00036598262,0.0000019137176,0.9547625,0.00042376784,0.0015975462,0.000059424743],"about_ca_topic_score_codex":0.000019736763,"about_ca_topic_score_gemma":0.0000066288194,"teacher_disagreement_score":0.03108646,"about_ca_system_score_codex":0.000022222848,"about_ca_system_score_gemma":0.00001550317,"threshold_uncertainty_score":0.16145982},"labels":[],"label_agreement":null},{"id":"W2129040062","doi":"10.1128/iai.01068-08","title":"Nonhematopoietic Cells Control the Outcome of Infection with<i>Listeria monocytogenes</i>in a Nucleotide Oligomerization Domain 1-Dependent Manner","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vetenskapsrådet; Karolinska Institutet; University of Toronto; Deutsche Forschungsgemeinschaft","keywords":"NOD1; Biology; Listeria monocytogenes; Microbiology; Intracellular; Immunology; Immune system; Innate immune system; Cell biology; Bacteria","score_opus":0.010657364981400658,"score_gpt":0.23878694210697476,"score_spread":0.2281295771255741,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129040062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960303,0.00020465991,0.0022432327,0.00025106446,0.00027356463,0.00039969134,0.000003310476,0.00004191684,0.0005523013],"genre_scores_gemma":[0.9993639,0.00019636693,0.000014332698,0.00017775508,0.000011215267,0.000020075182,0.000022044453,0.00000880419,0.0001855018],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986384,0.00057103013,0.00042881176,0.00013896973,0.000042112275,0.00018070782],"domain_scores_gemma":[0.99935377,0.0000796511,0.00022482444,0.00025742478,0.0000725247,0.0000118089265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059616537,0.00015668049,0.00025833087,0.00017190215,0.00022028477,0.000025451847,0.000061562576,0.00014979919,0.00008005554],"category_scores_gemma":[0.00003152279,0.00011130973,0.000060253285,0.0002113268,0.000120990466,0.00020332466,0.000022032267,0.00024940152,0.00003930042],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006800951,0.00017328633,0.04961917,0.000028540939,0.00005546188,0.0000011295086,0.00065378426,0.00021314449,0.9455161,0.0006931585,0.000019216104,0.0023468817],"study_design_scores_gemma":[0.002813908,0.00046697285,0.6844143,0.000049003447,0.000048817237,0.00008642238,0.0001182513,0.000036090423,0.30909672,0.00026219635,0.0024367278,0.00017056064],"about_ca_topic_score_codex":0.0010834994,"about_ca_topic_score_gemma":0.00018224493,"teacher_disagreement_score":0.6364194,"about_ca_system_score_codex":0.00004213932,"about_ca_system_score_gemma":0.000018904671,"threshold_uncertainty_score":0.4539079},"labels":[],"label_agreement":null},{"id":"W2129454070","doi":"10.4049/jimmunol.1000872","title":"Distinct Roles of Hepatocyte- and Myeloid Cell-Derived IL-1 Receptor Antagonist during Endotoxemia and Sterile Inflammation in Mice","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Université de Genève; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Novartis Foundation; Fondation Rheumasearch; Arthritis Foundation; National Science Foundation","keywords":"Inflammation; Proinflammatory cytokine; Myeloid; Hepatocyte; Interleukin 1 receptor antagonist; Biology; Receptor antagonist; Immunology; Systemic inflammation; Receptor; In vitro; Antagonist","score_opus":0.0043222972172302365,"score_gpt":0.200180261886374,"score_spread":0.19585796466914376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129454070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958634,0.0031813106,0.000008261805,0.00036142353,0.00037574748,0.00013958279,0.000006276262,0.0000064621854,0.000057561316],"genre_scores_gemma":[0.9979713,0.0018157769,0.00005570419,0.0000074511913,0.000035399906,0.0000030768467,0.000009075122,0.0000097456095,0.0000924777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986715,0.00040587207,0.00061507017,0.0000862235,0.000031539366,0.00018984346],"domain_scores_gemma":[0.99883324,0.00028546527,0.0006208509,0.00014943632,0.00009992576,0.000011066621],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006449788,0.00013171246,0.0003221766,0.00017671824,0.00013245258,0.0000106283405,0.00019024842,0.00020750178,0.00006847644],"category_scores_gemma":[0.00014394404,0.00009456838,0.000040029085,0.00007310974,0.00042633936,0.00023041737,0.00008420773,0.00057575415,0.000010716655],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025773356,0.000026208005,0.0019036864,0.00002873595,0.0000715837,0.0000029877863,0.002009387,0.0000013865472,0.9901732,0.000063615815,0.000013569466,0.0031282958],"study_design_scores_gemma":[0.0018786349,0.00024405544,0.09714488,0.00004558431,0.000030331008,0.000480022,0.00091979123,0.0000029955681,0.8974658,0.00005123034,0.0016543246,0.00008229876],"about_ca_topic_score_codex":0.0000624396,"about_ca_topic_score_gemma":0.00007060046,"teacher_disagreement_score":0.0952412,"about_ca_system_score_codex":0.000020784772,"about_ca_system_score_gemma":0.000055360953,"threshold_uncertainty_score":0.38563865},"labels":[],"label_agreement":null},{"id":"W2129550967","doi":"10.1128/iai.74.2.1050-1061.2006","title":"Role for Inducible Costimulator in Control of<i>Salmonella enterica</i>Serovar Typhimurium Infection in Mice","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto; University of Minnesota","keywords":"Salmonella enterica; Biology; CD8; Salmonella; Immune system; T cell; Cytotoxic T cell; Ovalbumin; Microbiology; Antibody; Antigen; Effector; Immunology; In vitro; Bacteria","score_opus":0.00750743270917717,"score_gpt":0.23270507499813892,"score_spread":0.22519764228896175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129550967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968884,0.000812547,0.0008709407,0.000043442065,0.00029408265,0.00044125135,0.000006088441,0.000030800384,0.0006124626],"genre_scores_gemma":[0.99943125,0.00020220852,0.000013470567,0.000035625646,0.0000186695,0.000055057193,0.00007261538,0.0000098248165,0.00016128886],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99892205,0.00030507668,0.00041183524,0.00014582669,0.000020491041,0.00019474556],"domain_scores_gemma":[0.999437,0.00018826529,0.0001516773,0.0001349449,0.00008028645,0.00000788073],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051931647,0.00012466223,0.00025458046,0.00033271816,0.00009592669,0.000011099371,0.00004294138,0.00022919038,0.00003899242],"category_scores_gemma":[0.000112406036,0.00012811,0.0000609089,0.00024304539,0.00007384472,0.00019189424,0.000024212932,0.0002454351,0.00002120683],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007227208,0.0002647666,0.19677173,0.000033838387,0.000023619627,2.2226699e-7,0.0001474896,0.00025151265,0.79925305,0.00022382554,0.000067137575,0.002240096],"study_design_scores_gemma":[0.0036792804,0.0002550102,0.7283548,0.000043417465,0.000015998114,0.000012053186,0.000030500576,0.0002711265,0.26022023,0.0003061837,0.006689739,0.00012161192],"about_ca_topic_score_codex":0.012098102,"about_ca_topic_score_gemma":0.0008407837,"teacher_disagreement_score":0.5390328,"about_ca_system_score_codex":0.000060669772,"about_ca_system_score_gemma":0.00003401707,"threshold_uncertainty_score":0.99448043},"labels":[],"label_agreement":null},{"id":"W2129703385","doi":"10.3389/fimmu.2013.00060","title":"Modulation of Neutrophil Apoptosis and the Resolution of Inflammation through β2 Integrins","year":2013,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Cell biology; Apoptosis; Phagocytosis; Neutrophil extracellular traps; Efferocytosis; Receptor; Integrin; Immunology; FADD; Signal transduction; Biology; Programmed cell death; Macrophage; Caspase; Biochemistry","score_opus":0.006047132896017294,"score_gpt":0.19841985488948832,"score_spread":0.19237272199347102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129703385","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9872459,0.004914811,0.005080752,0.0009456929,0.0007958678,0.00047164352,0.000001976505,0.000015744017,0.00052758795],"genre_scores_gemma":[0.99763775,0.001228609,0.00081540993,0.000016219652,0.000011791439,0.0000630245,0.000044577533,0.000008038405,0.00017456555],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985106,0.0005411901,0.0005839213,0.00014549227,0.00003110627,0.00018771684],"domain_scores_gemma":[0.9991133,0.00014097619,0.00034870772,0.0002737013,0.000119870274,0.0000034412672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035891813,0.0001179127,0.00036415784,0.00021640754,0.000069849346,0.0000051803004,0.00016321965,0.00028145761,0.00005473406],"category_scores_gemma":[0.0001947431,0.00008776194,0.00006346475,0.00019886483,0.0008224886,0.00030289666,0.00007570296,0.0002332269,0.000018487186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013436239,0.000037225273,0.002295133,0.000031067546,0.00020780381,8.0100925e-8,0.0030669342,0.00014756223,0.9494087,0.016553998,0.00084397517,0.026063912],"study_design_scores_gemma":[0.007456764,0.0003426714,0.15217009,0.00011430188,0.00006999305,0.000018736622,0.0033358422,0.0018047153,0.8089375,0.022105515,0.0034122735,0.00023157363],"about_ca_topic_score_codex":0.0008476869,"about_ca_topic_score_gemma":0.000007048991,"teacher_disagreement_score":0.14987496,"about_ca_system_score_codex":0.00004190856,"about_ca_system_score_gemma":0.000030115623,"threshold_uncertainty_score":0.3578828},"labels":[],"label_agreement":null},{"id":"W2129928982","doi":"10.1053/j.gastro.2004.05.052","title":"Discussion on toll-like receptor 9 signaling mediates the anti-inflammatory effects of probiotics in murine experimental colitis","year":2004,"lang":"en","type":"letter","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Lallemand (Canada); Western University","funders":"","keywords":"Toll-like receptor; Colitis; Receptor; Immunology; Medicine; Internal medicine; Innate immune system","score_opus":0.004928580734568925,"score_gpt":0.20647877262870418,"score_spread":0.20155019189413526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129928982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9297064,0.0006768858,0.000017980381,0.065638915,0.0028480445,0.0010159791,0.00002852911,0.00004618029,0.000021087484],"genre_scores_gemma":[0.9468591,0.0001355185,0.00003764976,0.05020521,0.0005143706,0.00019264854,0.0012379759,0.00007879817,0.000738692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99682236,0.0011535999,0.0007672679,0.0004391767,0.00009260937,0.0007249871],"domain_scores_gemma":[0.99866605,0.00031406834,0.0004911109,0.00046880124,0.000044805183,0.00001514953],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029969335,0.00043933102,0.00075697567,0.00034311463,0.00011151321,0.0000112525995,0.00045174288,0.0010002714,0.00019902347],"category_scores_gemma":[0.00007152502,0.00027092866,0.0002101123,0.00007807205,0.00045281893,0.00006713395,0.0001678291,0.0015738995,0.0001760535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034299036,0.00037389342,0.0024244983,0.0005807358,0.00043710484,0.00028786922,0.00160461,0.000094988834,0.8510806,0.000039705446,0.13938561,0.00026050225],"study_design_scores_gemma":[0.0056865723,0.0041018063,0.0067513576,0.0012351375,0.000098801174,0.00019500473,0.00021254945,0.000002511097,0.910305,0.0000387577,0.07102822,0.0003442764],"about_ca_topic_score_codex":0.000026105632,"about_ca_topic_score_gemma":0.000014199791,"teacher_disagreement_score":0.06835739,"about_ca_system_score_codex":0.00018832147,"about_ca_system_score_gemma":0.000085440406,"threshold_uncertainty_score":0.9999743},"labels":[],"label_agreement":null},{"id":"W2129970320","doi":"10.3346/jkms.2004.19.1.123","title":"X-linked Severe Combined Immunodeficiency Syndrome: The First Korean Case with γc Chain Gene Mutation and Subsequent Genetic Counseling","year":2004,"lang":"en","type":"article","venue":"Journal of Korean Medical Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"Korea Science and Engineering Foundation","keywords":"Mutation; Molecular biology; Gene mutation; Genetic counseling; Biology; Point mutation; Immunology; Medicine; Gene; Genetics","score_opus":0.007299079180341734,"score_gpt":0.22694108105622257,"score_spread":0.21964200187588084,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2129970320","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9925551,0.0021325704,0.0012241177,0.0035724235,0.00029610438,0.00016150923,0.0000012429753,0.000011923951,0.00004502052],"genre_scores_gemma":[0.9990751,0.00037203296,0.0002197848,0.00026925287,0.000023401422,0.0000028467437,0.000002742303,0.000007086614,0.000027727216],"study_design_codex":"bench_or_experimental","study_design_gemma":"case_report","domain_scores_codex":[0.998515,0.000109155524,0.000531458,0.00018164408,0.00032407505,0.00033864548],"domain_scores_gemma":[0.9989518,0.00014928007,0.00037198848,0.0001929296,0.00025232206,0.00008167576],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025740243,0.00013877271,0.0002263096,0.00016089124,0.0010493661,0.00005004724,0.00043478186,0.00011665084,0.00006394036],"category_scores_gemma":[0.00045620432,0.00007711293,0.000049354916,0.00043741066,0.0014541219,0.00026562845,0.00007562101,0.00043588257,0.000009245318],"study_design_candidate":"case_report","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0054018092,0.002130401,0.0042058495,0.00022671008,0.0008746225,0.069086716,0.07291681,0.0074505834,0.702118,0.008135191,0.0003746174,0.12707873],"study_design_scores_gemma":[0.008875636,0.0048156786,0.03743483,0.0006850894,0.00018138815,0.90326715,0.0032388077,0.00068352406,0.03816521,0.0011155952,0.0010529782,0.00048409533],"about_ca_topic_score_codex":0.0001307465,"about_ca_topic_score_gemma":0.000046871726,"teacher_disagreement_score":0.8341805,"about_ca_system_score_codex":0.00012950297,"about_ca_system_score_gemma":0.0008223055,"threshold_uncertainty_score":0.80709815},"labels":[],"label_agreement":null},{"id":"W2130314740","doi":"10.1096/fasebj.24.1_supplement.753.7","title":"Roll of Toll‐like Receptor 9 in Mouse Lung Inflammation in Response to Chicken Barn Air","year":2010,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"TLR9; Inflammation; Barn; Lung; TLR4; Immunology; Lipopolysaccharide; Biology; Barn-owl; Tumor necrosis factor alpha; Andrology; Respiratory system; Pathology; Molecular biology; Medicine; Internal medicine; Gene expression; Gene; Anatomy","score_opus":0.005735171825743387,"score_gpt":0.22861004799876883,"score_spread":0.22287487617302545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130314740","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663216,0.00015587383,0.000041287978,0.0020412777,0.000659611,0.00024134248,0.000005021585,0.0000119207225,0.00021150059],"genre_scores_gemma":[0.9979161,0.000032885768,0.00008132721,0.00009350344,0.000054804346,0.000010319053,0.000010918511,0.000011391846,0.0017887219],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981259,0.0008919271,0.00055357604,0.00010627248,0.000059072514,0.000263258],"domain_scores_gemma":[0.9991531,0.00028901262,0.00020523893,0.0002572337,0.000072835755,0.000022591465],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028977876,0.00011772961,0.00021086767,0.0004307582,0.0001153269,0.000014501693,0.00030052947,0.0001956618,0.0004064788],"category_scores_gemma":[0.00054824044,0.00008610676,0.00006685678,0.00022606151,0.00007467409,0.00020112161,0.000058520494,0.000862126,0.00022214494],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0055397167,0.000033768127,0.0023970802,0.0000044720596,0.00002313205,0.00000485048,0.0032769975,0.00019593159,0.98598266,0.00007548621,0.00047263186,0.0019932615],"study_design_scores_gemma":[0.0016280027,0.0001334544,0.044309173,0.00005002741,0.000007256571,0.00015525677,0.00044311708,0.00003113794,0.9481256,0.00007295989,0.0049384865,0.00010552029],"about_ca_topic_score_codex":0.000052977924,"about_ca_topic_score_gemma":0.00020821874,"teacher_disagreement_score":0.041912094,"about_ca_system_score_codex":0.00006508746,"about_ca_system_score_gemma":0.00015000149,"threshold_uncertainty_score":0.44506577},"labels":[],"label_agreement":null},{"id":"W2130333976","doi":"10.1152/ajpgi.2001.281.3.g635","title":"Persistent epithelial dysfunction and bacterial translocation after resolution of intestinal inflammation","year":2001,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; University of Calgary","funders":"","keywords":"Inflammation; Ileitis; Colitis; Chromosomal translocation; Inflammatory bowel disease; Secretion; Immunology; Biology; Intestinal permeability; Dysbiosis; Internal medicine; Microbiology; Endocrinology; Medicine; Crohn's disease; Biochemistry; Disease; Gut flora","score_opus":0.006343018786356916,"score_gpt":0.1968759514865865,"score_spread":0.19053293270022958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130333976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980272,0.000690202,0.00066587643,0.00025378552,0.0002137404,0.0001146449,0.0000053170947,0.000012707469,0.000016503674],"genre_scores_gemma":[0.99832463,0.00048350933,0.0008618986,0.000028493745,0.00021845264,0.000007147749,0.00003589477,0.0000109162265,0.000029026622],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998266,0.00053440215,0.00064644654,0.00023193995,0.000051853513,0.00026935333],"domain_scores_gemma":[0.9984411,0.00023003625,0.00083558745,0.00012685714,0.0003253691,0.000041039828],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032944113,0.00021097288,0.00052161777,0.00022290001,0.00010200153,0.0000073171373,0.00010870461,0.00007702122,0.00011729291],"category_scores_gemma":[0.00013723322,0.00017393261,0.00014701599,0.0001411712,0.0010859411,0.00025430147,0.000050088238,0.00031132885,0.000012577932],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.011710651,0.000075180265,0.0006478536,0.000030698724,0.00009728781,0.000004164976,0.00044557112,0.00005671102,0.9640581,0.00017429452,0.000017377155,0.022682095],"study_design_scores_gemma":[0.00392927,0.01716529,0.8202121,0.0005496923,0.0003131094,0.0099901855,0.0015595071,0.00047956387,0.14344746,0.00078777433,0.0011548016,0.00041123465],"about_ca_topic_score_codex":0.00010533644,"about_ca_topic_score_gemma":0.000006266541,"teacher_disagreement_score":0.82061064,"about_ca_system_score_codex":0.000033373108,"about_ca_system_score_gemma":0.000070183014,"threshold_uncertainty_score":0.7092766},"labels":[],"label_agreement":null},{"id":"W2130527789","doi":"10.1007/978-1-4419-6612-4_19","title":"Role of 4-1BBL and TRAF1 in the CD8 T Cell Response to Influenza Virus and HIV","year":2010,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Cytotoxic T cell; Biology; CD8; Immunology; Interleukin 21; Immune system; Natural killer T cell; T cell; Cancer research","score_opus":0.024056265911373494,"score_gpt":0.3655180028767884,"score_spread":0.3414617369654149,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130527789","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20938148,0.7897415,5.692014e-7,0.00007342679,0.00013173162,0.0004323476,0.0000092442115,0.0000044404437,0.00022521535],"genre_scores_gemma":[0.04743025,0.95206624,0.000026083624,0.0002545875,0.000030876156,0.00010529875,0.000043888158,0.00001010478,0.000032683914],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99808246,0.0007758573,0.000582735,0.0003090097,0.000021243277,0.0002286994],"domain_scores_gemma":[0.9987302,0.00085673784,0.00018930146,0.00019312157,0.000011314711,0.00001933052],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068576663,0.00026135024,0.00093474606,0.00032691762,0.00005096451,0.000003211906,0.00016916046,0.00041935605,0.000030780415],"category_scores_gemma":[0.00013596796,0.0001521989,0.000035976565,0.00015583399,0.0006730085,0.00008117045,0.00010508834,0.0004291264,0.000007190709],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008868143,0.000067022964,0.00011939911,0.00031707739,0.000015356243,0.0000038375874,0.004251347,3.6509256e-8,0.49404556,0.00023020366,0.000021491256,0.50004184],"study_design_scores_gemma":[0.0010767565,0.0010458445,0.00009900933,0.0009553932,0.000035947305,0.00012645317,0.0031628814,1.6675521e-7,0.01371329,0.000067766894,0.97955596,0.00016051014],"about_ca_topic_score_codex":0.000053105436,"about_ca_topic_score_gemma":0.00003391009,"teacher_disagreement_score":0.9795345,"about_ca_system_score_codex":0.000016095453,"about_ca_system_score_gemma":0.000032982633,"threshold_uncertainty_score":0.6206491},"labels":[],"label_agreement":null},{"id":"W2130558223","doi":"10.1189/jlb.0506350","title":"The Fps/Fes kinase regulates the inflammatory response to endotoxin through down-regulation of TLR4, NF-κB activation, and TNF-α secretion in macrophages","year":2006,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"National Cancer Institute; Canadian Cancer Society","keywords":"Secretion; TLR4; Tumor necrosis factor alpha; Biology; NF-κB; Kinase; Inflammatory response; Inflammation; Cell biology; NFKB1; IκB kinase; Macrophage; Signal transduction; Immunology; Biochemistry; Gene; Transcription factor; In vitro","score_opus":0.006472245697552675,"score_gpt":0.23612322275773642,"score_spread":0.22965097706018375,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130558223","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.991786,0.0039020292,0.00022916474,0.003415842,0.00031494012,0.00027368503,0.0000030928024,0.000009156308,0.00006610591],"genre_scores_gemma":[0.99888486,0.00036408714,0.00008132554,0.00008111018,0.00009426445,0.000010810336,0.00001542063,0.000010256127,0.00045786952],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99720925,0.0014490224,0.00089226174,0.00014222856,0.000058577112,0.00024865926],"domain_scores_gemma":[0.9974541,0.0013095863,0.0007554399,0.00022869569,0.00023953324,0.000012648871],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020009524,0.00016027552,0.0003046686,0.00022652952,0.00025113462,0.00002145002,0.00022974105,0.0002572945,0.000033763055],"category_scores_gemma":[0.0005862939,0.00009361842,0.00008966447,0.0002093792,0.00039170668,0.00022989734,0.00006565271,0.00028906864,0.0000119400665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0063401377,0.000028443073,0.0022058554,0.00000900937,0.00005843863,0.000002860891,0.00071196764,0.00013002835,0.98284954,0.002088582,0.0006348838,0.004940265],"study_design_scores_gemma":[0.0010449329,0.0003424902,0.24492067,0.000054979115,0.000014348322,0.000099220706,0.00031378557,0.000006439919,0.7219363,0.0020412407,0.029145416,0.000080169935],"about_ca_topic_score_codex":0.0001104692,"about_ca_topic_score_gemma":0.000050697225,"teacher_disagreement_score":0.26091322,"about_ca_system_score_codex":0.00010259623,"about_ca_system_score_gemma":0.00014354654,"threshold_uncertainty_score":0.38176486},"labels":[],"label_agreement":null},{"id":"W2130827011","doi":"10.1172/jci16510","title":"Endothelium-derived Toll-like receptor-4 is the key molecule in LPS-induced neutrophil sequestration into lungs","year":2003,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":406,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale","keywords":"TLR4; Bone marrow; Intravital microscopy; Endothelium; Immunology; Lipopolysaccharide; Inflammation; Pulmonary sequestration; Microcirculation; Biology; Medicine; Pathology; Lung; Internal medicine; Endocrinology","score_opus":0.04664398978921872,"score_gpt":0.32455398685784503,"score_spread":0.2779099970686263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2130827011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911478,0.0004654568,0.00015171478,0.006272324,0.001367304,0.00020488635,7.855264e-7,0.000012048581,0.00037764868],"genre_scores_gemma":[0.9969339,0.00034152475,0.00045986316,0.0018165341,0.00012423741,0.000006878229,0.000014279514,0.00001359188,0.00028923096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959199,0.0019301712,0.0016843929,0.00016796673,0.00010422617,0.0001933336],"domain_scores_gemma":[0.99778736,0.0006120307,0.0010647412,0.00022713821,0.00026447015,0.000044266464],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030747706,0.00014988784,0.00037625115,0.00014131669,0.00012969357,0.000036024976,0.00021244588,0.00037243724,0.00016378552],"category_scores_gemma":[0.0021642514,0.00010656616,0.00020274142,0.00020757467,0.00021118428,0.0004005783,0.000018932598,0.0007953434,0.00015245262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036840056,0.000068975634,0.0026542249,0.0000085698,0.00007768416,0.0000051236284,0.0013664439,0.00002191613,0.98979104,0.0017290058,0.0020326355,0.0018760067],"study_design_scores_gemma":[0.00240016,0.0007884945,0.018137991,0.00011846926,0.000056940542,0.00007931093,0.0003443254,0.000040136576,0.9525432,0.004692109,0.020629155,0.0001697365],"about_ca_topic_score_codex":0.000038818143,"about_ca_topic_score_gemma":0.000013127208,"teacher_disagreement_score":0.03724784,"about_ca_system_score_codex":0.00006681127,"about_ca_system_score_gemma":0.00043675408,"threshold_uncertainty_score":0.4345642},"labels":[],"label_agreement":null},{"id":"W2131129064","doi":"10.1128/iai.00709-10","title":"Exposure to Cigarette Smoke Inhibits the Pulmonary T-Cell Response to Influenza Virus and<i>Mycobacterium tuberculosis</i>","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Kentucky","keywords":"Mycobacterium tuberculosis; Tuberculosis; Immunology; Virus; Biology; Influenza A virus; Virology; Interferon gamma; Tuberculosis vaccines; Orthomyxoviridae; Immune system; Microbiology; Medicine; Pathology","score_opus":0.009648064135921734,"score_gpt":0.23836229280460708,"score_spread":0.22871422866868535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131129064","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958335,0.00042521724,0.000020524662,0.0015524059,0.00093548995,0.00042863702,0.000013999423,0.00009517619,0.0006950565],"genre_scores_gemma":[0.9964136,0.00012863541,0.000008133005,0.0026382604,0.00004775872,0.0000663882,0.000020827923,0.000017766839,0.00065866706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983864,0.00073029887,0.00031388263,0.00023712884,0.000045397894,0.00028688178],"domain_scores_gemma":[0.99897796,0.00028725417,0.000080346144,0.00047641745,0.000119564145,0.000058434995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001186688,0.00021284823,0.00019737857,0.00020647954,0.0007034952,0.00007847078,0.00012431842,0.00030299101,0.00017067645],"category_scores_gemma":[0.0003867529,0.00016580854,0.000058753714,0.00026180738,0.00014478702,0.00023461797,0.0002395925,0.00079136965,0.00022649967],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001784671,0.000071620685,0.006725051,0.000011449795,0.000034346176,0.0000011879844,0.0013244244,0.000002409229,0.97948253,0.000035418885,0.0005762973,0.00995058],"study_design_scores_gemma":[0.00039470967,0.0003123904,0.3853642,0.00001641286,0.000021333184,0.0001230152,0.00009398973,9.53013e-7,0.4400489,0.000016181777,0.17345129,0.00015658981],"about_ca_topic_score_codex":0.0009786341,"about_ca_topic_score_gemma":0.00015425803,"teacher_disagreement_score":0.5394336,"about_ca_system_score_codex":0.000023059747,"about_ca_system_score_gemma":0.000043256714,"threshold_uncertainty_score":0.6761476},"labels":[],"label_agreement":null},{"id":"W2131243283","doi":"10.1093/intimm/dxp030","title":"Sequences derived from self-RNA containing certain natural modifications act as suppressors of RNA-mediated inflammatory immune responses","year":2009,"lang":"en","type":"article","venue":"International Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"U.S. Public Health Service; Pfizer","keywords":"RNA; RNA silencing; Immune system; Gene silencing; Biology; Small interfering RNA; Cell biology; Nucleic acid; Sense (electronics); Innate immune system; Methylation; RNA interference; Chemistry; Gene; Immunology; Genetics","score_opus":0.011149751535203091,"score_gpt":0.26089746823606524,"score_spread":0.24974771670086215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131243283","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874392,0.0054893326,0.000058647773,0.0024465057,0.0018163153,0.00027724152,0.00007796094,0.00020088635,0.0021939052],"genre_scores_gemma":[0.9965368,0.00057195115,0.00019589139,0.00020712933,0.000054036434,0.000039353094,0.0012213307,0.000019664969,0.0011538436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974267,0.0006903207,0.0009679976,0.0003853913,0.00012088523,0.00040873702],"domain_scores_gemma":[0.9972948,0.0011369183,0.000642711,0.0004649516,0.00043896696,0.000021663145],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038169342,0.00030223868,0.00046685303,0.00048990105,0.00021221962,0.00003511893,0.0008548779,0.00043771663,0.000869817],"category_scores_gemma":[0.0011230995,0.00029273325,0.00019529571,0.00017359156,0.000364237,0.0004643606,0.00011676464,0.00055814546,0.00055665773],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030192316,0.00014107347,0.0005401818,0.0000028447043,0.0010311865,0.000019100815,0.0019492783,0.000025952962,0.9862774,0.0035494203,0.000113736,0.0033306174],"study_design_scores_gemma":[0.0022006321,0.00039103266,0.120977536,0.0000735964,0.000061592495,0.000081103826,0.0009121733,0.0001223503,0.8651767,0.0011224521,0.008567026,0.00031385408],"about_ca_topic_score_codex":0.0005983601,"about_ca_topic_score_gemma":0.000018421528,"teacher_disagreement_score":0.121100724,"about_ca_system_score_codex":0.00016781037,"about_ca_system_score_gemma":0.0002991022,"threshold_uncertainty_score":0.9999525},"labels":[],"label_agreement":null},{"id":"W2131343547","doi":"10.1177/1753425907087588","title":"Structure of a novel lipid A obtained from the lipopolysaccharide of <i>Caulobacter crescentus</i>","year":2008,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health","keywords":"Caulobacter crescentus; Biochemistry; Chemistry; Fatty acid; Protein subunit; Lipid A; Lipopolysaccharide; Tetrasaccharide; Secretion; Molecular mass; Stereochemistry; Biology; Enzyme; Cell; Polysaccharide; Gene","score_opus":0.015778684914961323,"score_gpt":0.2248220362744317,"score_spread":0.2090433513594704,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131343547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975908,0.0010530325,0.00008680955,0.00024921683,0.00044249682,0.00019307273,0.0001940159,0.000028473538,0.00016212238],"genre_scores_gemma":[0.9991694,0.0001846229,0.000071790295,0.00015649383,0.00003251419,0.0000028484785,0.00018331326,0.000012999984,0.00018603019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987237,0.00035132768,0.0005098503,0.00013229263,0.00005991218,0.00022291181],"domain_scores_gemma":[0.99847084,0.00034886107,0.00035235405,0.00064047775,0.00017712312,0.000010356323],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019734669,0.00016728882,0.00033098308,0.000070474474,0.00022143876,0.0000048301426,0.00048496056,0.00023516484,0.00040754958],"category_scores_gemma":[0.0002505189,0.0001162348,0.00013437624,0.00016079938,0.00043421233,0.0001293075,0.0001623887,0.00045220144,0.00002578039],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00065489515,0.00013934063,0.002668258,0.000010572369,0.00021213843,8.105435e-7,0.002324295,0.0000048551146,0.99245596,0.00022888837,0.0006048136,0.0006951756],"study_design_scores_gemma":[0.0014339037,0.000085763306,0.05562268,0.000054226097,0.00004008571,0.000035194884,0.00027194133,0.0000057385732,0.9369739,0.00006339185,0.0053010485,0.00011210284],"about_ca_topic_score_codex":0.003396791,"about_ca_topic_score_gemma":0.00006176368,"teacher_disagreement_score":0.05548203,"about_ca_system_score_codex":0.000021633909,"about_ca_system_score_gemma":0.000114039794,"threshold_uncertainty_score":0.51349545},"labels":[],"label_agreement":null},{"id":"W2131416851","doi":"10.4049/jimmunol.1303083","title":"Intestinal Expression of Fas and Fas Ligand Is Upregulated by Bacterial Signaling through TLR4 and TLR5, with Activation of Fas Modulating Intestinal TLR-Mediated Inflammation","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Fas ligand; TLR5; TLR4; Intestinal epithelium; TLR2; Biology; Cell biology; Apoptosis; Toll-like receptor; Inflammation; Signal transduction; Receptor; Fas receptor; Immunology; Epithelium; Immune system; Innate immune system; Programmed cell death; Biochemistry","score_opus":0.007537679788040544,"score_gpt":0.20905767485352134,"score_spread":0.2015199950654808,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131416851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99269533,0.000937472,0.0057074404,0.0003052762,0.0001298065,0.00016954847,0.0000033353185,0.000012902385,0.00003887319],"genre_scores_gemma":[0.99908763,0.00018904098,0.00057208916,0.000019402549,0.00004160555,0.0000019998781,0.000037422396,0.000016466545,0.00003436433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794704,0.00070893875,0.00091018644,0.00013504892,0.000084970976,0.00021384009],"domain_scores_gemma":[0.9967722,0.00095130823,0.0016552636,0.00018564526,0.00042100353,0.0000145791155],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009201838,0.00020662167,0.00048989267,0.00016585168,0.00016497713,0.000014521234,0.0001876297,0.0002427467,0.000048620608],"category_scores_gemma":[0.00067622046,0.00013671083,0.000045752782,0.00015317748,0.00050824246,0.00043027342,0.00009647916,0.00042310733,0.0000021176752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044289418,0.000037675876,0.0008439262,0.00004271669,0.00017785084,5.669501e-7,0.0037490784,0.000060371094,0.98521245,0.000050221905,0.000043273085,0.00535294],"study_design_scores_gemma":[0.0026178008,0.0016446132,0.006305413,0.0007434109,0.00010279697,0.00047513758,0.0008004686,0.00019335141,0.9865529,0.0002681006,0.00016501405,0.00013102262],"about_ca_topic_score_codex":0.00007232226,"about_ca_topic_score_gemma":0.0000014651094,"teacher_disagreement_score":0.0063922633,"about_ca_system_score_codex":0.000025933261,"about_ca_system_score_gemma":0.00006746961,"threshold_uncertainty_score":0.55749065},"labels":[],"label_agreement":null},{"id":"W2131559384","doi":"10.1016/j.clim.2009.03.024","title":"OR.17. Ninjurin-1 is a Novel Adhesion Molecule of the Blood-brain Barrier Involved in the Recruitment of Monocytes to the Central Nervous System","year":2009,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences; Université de Montréal; Hôpital Notre-Dame","funders":"","keywords":"Blood–brain barrier; Central nervous system; Cell adhesion molecule; Adhesion; Neuroscience; Immunology; Medicine; Chemistry; Biology","score_opus":0.06436250368371683,"score_gpt":0.3315670810607327,"score_spread":0.26720457737701586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131559384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9857661,0.0020275998,0.000053382,0.010015447,0.0006432709,0.001186289,0.000017634424,0.000020102483,0.00027015587],"genre_scores_gemma":[0.9960382,0.00016298679,0.00004071835,0.0025844725,0.000034619716,0.000068982816,0.000013046428,0.000010167678,0.0010468293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962129,0.0017286965,0.0012644472,0.00029510926,0.00007130874,0.00042751228],"domain_scores_gemma":[0.99706197,0.0013730655,0.00045115597,0.0009993581,0.00009860966,0.000015860625],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016191971,0.00020157322,0.0005311137,0.000089133755,0.00014980113,0.0000089140685,0.0010302905,0.00044329916,0.00006614694],"category_scores_gemma":[0.0010255524,0.00009519492,0.00029346606,0.00034395992,0.0004283613,0.00004794989,0.00020574355,0.0005659283,0.0000522285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036205687,0.00095163455,0.0024057878,0.000023703751,0.00046375682,0.000005842139,0.0035824461,0.000017211838,0.9681907,0.0061626756,0.0038439014,0.0107317325],"study_design_scores_gemma":[0.0042919843,0.0031433317,0.35181168,0.00028046547,0.00020021353,0.000073503514,0.0030542011,0.00002562267,0.596739,0.0001215981,0.04002517,0.00023323488],"about_ca_topic_score_codex":0.00013809583,"about_ca_topic_score_gemma":0.000049166403,"teacher_disagreement_score":0.37145174,"about_ca_system_score_codex":0.000039650105,"about_ca_system_score_gemma":0.0002017757,"threshold_uncertainty_score":0.3881936},"labels":[],"label_agreement":null},{"id":"W2131966979","doi":"10.1111/j.1600-065x.2011.01047.x","title":"Peptidoglycan: a critical activator of the mammalian immune system during infection and homeostasis","year":2011,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":134,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Peptidoglycan; Biology; Immune system; NOD1; Microbiology; Cell biology; Innate immune system; Cell wall; NOD2; Immunology; Genetics","score_opus":0.053186184661224496,"score_gpt":0.3072133030080091,"score_spread":0.2540271183467846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2131966979","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012859852,0.99555486,0.0000091243965,0.000025318106,0.0009827298,0.0016261834,0.00002367368,0.00007804565,0.00041408412],"genre_scores_gemma":[0.0026775496,0.99624723,0.000023310191,0.000005960806,0.00003928316,0.00038064108,0.00003969468,0.000040225164,0.00054609077],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9941336,0.0029004607,0.0018715679,0.00052739674,0.00005867031,0.00050831377],"domain_scores_gemma":[0.99724305,0.00043010074,0.0011891451,0.0010170749,0.00009303437,0.000027602568],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00097382604,0.00064234954,0.00302233,0.00020464695,0.0003856141,0.00002848765,0.000572377,0.0011676815,0.00037062354],"category_scores_gemma":[0.0014850546,0.00035061454,0.00119637,0.00043571688,0.00073428213,0.00015781229,0.0005458421,0.0011606524,0.00061684864],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000084562016,0.00007118324,0.000004318507,0.017195348,0.00025207477,0.0000029560117,0.00007652107,4.420577e-9,0.002585472,0.002835462,0.00002440547,0.9768677],"study_design_scores_gemma":[0.00027696352,0.00015824845,0.0005942828,0.019408919,0.00080557214,0.0006393265,0.000028744495,2.6745877e-8,0.0027544564,0.0000120866625,0.9749616,0.00035976872],"about_ca_topic_score_codex":0.00008510402,"about_ca_topic_score_gemma":0.0000016559212,"teacher_disagreement_score":0.9765079,"about_ca_system_score_codex":0.00018623442,"about_ca_system_score_gemma":0.00011443773,"threshold_uncertainty_score":0.99989456},"labels":[],"label_agreement":null},{"id":"W2132009816","doi":"10.1186/s12876-014-0206-x","title":"Toll-like receptor 4 Asp299Gly and Thr399Ile polymorphisms: New data and a meta-analysis","year":2014,"lang":"en","type":"review","venue":"BMC Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Heart Institute","funders":"","keywords":"Medicine; Immunology; Ulcerative colitis; NOD2; Inflammatory bowel disease; Pathogenesis; Single-nucleotide polymorphism; Crohn's disease; Hepatology; Population; Disease; Immune system; TLR4; Gastroenterology; Internal medicine; Genotype; Genetics; Gene; Biology","score_opus":0.10179352197307648,"score_gpt":0.32168882318578323,"score_spread":0.21989530121270676,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132009816","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00025803305,0.99621326,0.0018605522,0.00024021567,0.00035219837,0.000587717,0.00038426547,0.000057684356,0.000046073474],"genre_scores_gemma":[0.00011319628,0.9876976,0.0008085123,0.00036738213,0.00008733697,0.00008682749,0.0048296982,0.000054314572,0.00595514],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.99519664,0.001976034,0.0010511267,0.0010980444,0.00005282795,0.0006253344],"domain_scores_gemma":[0.99708295,0.00042481502,0.00076265004,0.0016172485,0.000036200432,0.00007615051],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008375487,0.0006704136,0.0049382984,0.00062152435,0.00015272936,0.00005069446,0.0007953914,0.00075860723,0.0016502915],"category_scores_gemma":[0.0001204068,0.0004973616,0.00095759623,0.00020006232,0.00031767975,0.00016503583,0.00093187613,0.0005319752,0.0004405255],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014263608,0.00020793125,0.00076501764,0.0047281133,0.59330034,0.00001893157,0.0002766372,0.0000015472085,0.00019205268,0.00030941577,0.07980977,0.3189639],"study_design_scores_gemma":[0.00047895912,0.00033362897,0.000051480565,0.000039613045,0.2489249,0.00031432527,0.000009127769,0.000003503995,0.000002721929,0.000007665434,0.74964374,0.00019035576],"about_ca_topic_score_codex":0.00012321825,"about_ca_topic_score_gemma":0.0002438962,"teacher_disagreement_score":0.66983396,"about_ca_system_score_codex":0.000025049269,"about_ca_system_score_gemma":0.00013804548,"threshold_uncertainty_score":0.9997478},"labels":[],"label_agreement":null},{"id":"W2132015115","doi":"10.1080/01902140802130105","title":"ALVEOLAR EPITHELIUM DOWN-MODULATES ENDOTOXIN—BUT NOT TUMOR NECROSIS FACTOR ALPHA—INDUCED ACTIVATION OF ENDOTHELIUM AND SELECTIVELY INHIBITS NEUTROPHIL TRANSENDOTHELIAL MIGRATION","year":2008,"lang":"en","type":"article","venue":"Experimental Lung Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Respiratory epithelium; Endothelium; Alveolar Epithelium; Tumor necrosis factor alpha; Interleukin 8; Cell biology; Epithelium; Chemokine; Lipopolysaccharide; TLR4; Proinflammatory cytokine; Biology; A549 cell; Immunology; Chemistry; Inflammation; Signal transduction; Endocrinology; Cell; Biochemistry","score_opus":0.04131780013714314,"score_gpt":0.31090926661196217,"score_spread":0.269591466474819,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132015115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970042,0.0012598071,0.000029214723,0.00030668377,0.00017145427,0.00091977196,0.00005824494,0.00006194152,0.0001886651],"genre_scores_gemma":[0.9984112,0.00019410334,0.000063827334,0.000042694912,0.00006974472,0.00015111396,0.00007689044,0.00004118889,0.0009492675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99739504,0.0007678718,0.00051083235,0.00048327682,0.00025268254,0.0005903167],"domain_scores_gemma":[0.99887055,0.0003770348,0.00015860914,0.00027812066,0.0002634689,0.000052197272],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00046758234,0.00027926738,0.0003830007,0.00045327633,0.00062861264,0.000032435073,0.000209653,0.00023883894,0.00028372617],"category_scores_gemma":[0.00014671726,0.00025902104,0.00012858374,0.00030789044,0.00042870917,0.0004891999,0.00009366048,0.00053635344,0.00008671261],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025410382,0.0002816843,0.00078169216,0.000031922333,0.00012410048,0.0000058827745,0.0069462904,0.0000016948404,0.9884051,0.00015687368,0.00013697096,0.00058672146],"study_design_scores_gemma":[0.0024378782,0.00087148,0.013209221,0.000054867694,0.000009240322,0.00010322968,0.00059432915,0.000055024437,0.98187524,0.00001621063,0.0005404206,0.00023285134],"about_ca_topic_score_codex":0.0012551593,"about_ca_topic_score_gemma":0.000010662303,"teacher_disagreement_score":0.012427528,"about_ca_system_score_codex":0.00026540176,"about_ca_system_score_gemma":0.0002759846,"threshold_uncertainty_score":0.9999862},"labels":[],"label_agreement":null},{"id":"W2132027014","doi":"10.1073/pnas.0710445105","title":"Differential function of the NACHT-LRR (NLR) members Nod1 and Nod2 in arthritis","year":2008,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Dutch Arthritis Association","keywords":"NOD1; Proinflammatory cytokine; NOD2; Inflammation; Immunology; Rheumatoid arthritis; Arthritis; Pathogenesis; Medicine; Biology; Innate immune system; Immune system","score_opus":0.02163860983304921,"score_gpt":0.24400302085627745,"score_spread":0.22236441102322824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132027014","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970863,0.00066358974,3.093723e-7,0.0009573485,0.00005801715,0.00010707219,0.0000031072932,0.0000033639483,0.0011209033],"genre_scores_gemma":[0.9995127,0.00018289848,0.000015806632,0.000050426424,0.00001282839,0.0000040001946,1.8520664e-7,0.0000016009571,0.00021959271],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993409,0.000018681543,0.00027182387,0.00011241261,0.00016315492,0.00009304818],"domain_scores_gemma":[0.99953264,0.00006547464,0.0002909289,0.000007416244,0.00009934883,0.000004167258],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044830088,0.00005769687,0.000118734664,0.00011563459,0.00018820244,0.0000034749473,0.0002727399,0.000100339086,0.000037248683],"category_scores_gemma":[0.00023794851,0.000034257926,0.00004891443,0.00031566434,0.0011106541,0.00022931356,0.00009160922,0.0001439905,0.0000012141145],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000071192175,0.000023734923,0.0136122,0.000016016045,0.000011269682,1.665746e-9,0.00038109647,0.0000054714706,0.9790273,0.005970353,0.00019555872,0.0006858489],"study_design_scores_gemma":[0.00027841874,0.000028246044,0.3826067,0.00006589798,0.000004849463,0.000014428268,0.00011472725,0.000020922824,0.61519027,0.0014598026,0.00018680024,0.000028979011],"about_ca_topic_score_codex":0.00001612553,"about_ca_topic_score_gemma":3.602948e-7,"teacher_disagreement_score":0.36899447,"about_ca_system_score_codex":0.000011993069,"about_ca_system_score_gemma":0.000025711046,"threshold_uncertainty_score":0.40922514},"labels":[],"label_agreement":null},{"id":"W2132427034","doi":"10.1111/j.1744-313x.2011.01077.x","title":"Evaluation of Toll‐like receptor and adaptor molecule polymorphisms for susceptibility to tuberculosis in a Colombian population","year":2012,"lang":"en","type":"article","venue":"International Journal of Immunogenetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Heart Institute; Université du Québec à Chicoutimi","funders":"Universidad de Antioquia; Harvard University","keywords":"Toll; Tuberculosis; Toll-like receptor; Receptor; Population; Biology; Immunology; Signal transducing adaptor protein; Genetics; Medicine; Environmental health; Innate immune system; Pathology","score_opus":0.022891578099828783,"score_gpt":0.3031891700190005,"score_spread":0.2802975919191717,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132427034","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99392444,0.0037513298,0.0004061905,0.00036647156,0.0011815835,0.0003136835,0.000026754218,0.0000027694148,0.00002680808],"genre_scores_gemma":[0.9986154,0.000116063224,0.0010465522,0.000050319533,0.00006206362,0.000012766792,0.000052511947,0.000009499619,0.000034843444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99859786,0.00029460326,0.00065970153,0.00008645518,0.00020606877,0.00015530165],"domain_scores_gemma":[0.99829465,0.00012375634,0.00035959145,0.00010714405,0.0010917969,0.000023078484],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022125535,0.000095545496,0.00019986148,0.00029240726,0.000030342302,0.0000122873735,0.00017285564,0.00011950505,0.00008933768],"category_scores_gemma":[0.000615735,0.00009249552,0.00008509089,0.00008311375,0.000037913513,0.00018177963,0.00004527844,0.00009207806,0.0000061234746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010764073,0.00017763054,0.0238095,0.000005725968,0.00024198834,1.7915511e-7,0.00080091116,0.0001284414,0.94857293,0.00011177148,0.00016312707,0.024911402],"study_design_scores_gemma":[0.002798954,0.00051372725,0.39848474,0.000104116545,0.00014370646,0.000068153604,0.0003053102,0.00011641509,0.5954512,0.00015006517,0.0017268157,0.0001368415],"about_ca_topic_score_codex":0.00008096163,"about_ca_topic_score_gemma":0.000038475537,"teacher_disagreement_score":0.3746752,"about_ca_system_score_codex":0.00022655108,"about_ca_system_score_gemma":0.0000956367,"threshold_uncertainty_score":0.37718576},"labels":[],"label_agreement":null},{"id":"W2132545831","doi":"10.1164/rccm.201001-0088oc","title":"Phosphoinositide-3 Kinase γ Activity Contributes to Sepsis and Organ Damage by Altering Neutrophil Recruitment","year":2010,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Federal Aviation Administration; Pfizer","keywords":"Sepsis; Medicine; PI3K/AKT/mTOR pathway; Immunology; Septic shock; Phosphoinositide 3-kinase; Chemokine; Pathogenesis; Inflammation; Systemic inflammation; Intensive care; Organ dysfunction; Signal transduction; Biology; Cell biology; Intensive care medicine","score_opus":0.014764311652825369,"score_gpt":0.3009525846501722,"score_spread":0.28618827299734684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2132545831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98687726,0.0071307137,0.0003655841,0.0050218203,0.00039883057,0.0001306979,0.0000085671145,0.000010219025,0.000056327477],"genre_scores_gemma":[0.9975629,0.0001037989,0.00006693773,0.0021462392,0.00008533817,0.000007083721,0.0000025888926,0.000010495903,0.000014612162],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989444,0.00026169055,0.0003304917,0.00016414584,0.000064249565,0.00023499715],"domain_scores_gemma":[0.9988799,0.00046691127,0.0001276332,0.00014370277,0.00025974115,0.0001221049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047161515,0.00015145371,0.00043851946,0.00013627755,0.00017011836,0.000017461909,0.00009872908,0.0000780344,0.00008890839],"category_scores_gemma":[0.0007883879,0.00011480744,0.000038701688,0.00013659812,0.00097299786,0.00012550394,0.000054410313,0.00049350515,0.00000441899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060284714,0.000023862543,0.0020914613,0.000021757522,0.00003641165,0.00003587907,0.0005135709,9.451747e-8,0.8903713,0.00027877113,0.00072469545,0.105299324],"study_design_scores_gemma":[0.0020429238,0.0072501465,0.031102445,0.00024835631,0.00018712744,0.0002020273,0.004133962,6.619163e-7,0.85523635,0.00006767559,0.099311486,0.00021682921],"about_ca_topic_score_codex":0.00004236476,"about_ca_topic_score_gemma":0.0000058133705,"teacher_disagreement_score":0.1050825,"about_ca_system_score_codex":0.00002777976,"about_ca_system_score_gemma":0.000052728097,"threshold_uncertainty_score":0.46817115},"labels":[],"label_agreement":null},{"id":"W2133206699","doi":"10.1186/1479-5876-8-6","title":"Robust TLR4-induced gene expression patterns are not an accurate indicator of human immunity","year":2010,"lang":"en","type":"article","venue":"Journal of Translational Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; Queen's University; University of British Columbia","funders":"Canadian Institutes of Health Research; Genome Prairie; Genome British Columbia; Michael Smith Health Research BC; University of British Columbia; Wellcome Trust","keywords":"Immunity; TLR4; Gene expression; Gene; Computational biology; Expression (computer science); Biology; Bioinformatics; Immunology; Medicine; Genetics; Computer science; Immune system","score_opus":0.051073552480003434,"score_gpt":0.3026444989607288,"score_spread":0.25157094648072537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133206699","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967573,0.00023861694,0.0006476772,0.0014465209,0.0007350239,0.00009698317,0.000014804375,0.000008322799,0.000054714168],"genre_scores_gemma":[0.99925226,0.000035679754,0.00022564523,0.00007456172,0.0002535817,0.0000017257464,0.00010746212,0.000011390941,0.000037672307],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851406,0.00026106887,0.00083315844,0.000099099154,0.00014954033,0.00014306071],"domain_scores_gemma":[0.99836475,0.00018185502,0.00092847325,0.00020362792,0.00028006197,0.000041233365],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00095319224,0.00013282541,0.0003735224,0.0003041278,0.00015162946,0.000004444067,0.0002740121,0.00023277095,0.0012227442],"category_scores_gemma":[0.00012998506,0.00009539538,0.000095319236,0.000081261314,0.00013106845,0.00030703188,0.000012561038,0.000733707,0.000008888626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005904794,0.00013935669,0.006113497,0.000020937237,0.00008180015,0.0000060289944,0.001049372,0.000017518742,0.9901176,0.000092367,0.000090693124,0.0016803367],"study_design_scores_gemma":[0.0021022458,0.000490804,0.28965935,0.00015581306,0.00005512896,0.0001245526,0.00022859668,0.00000483198,0.70672625,0.000060001,0.0003192916,0.00007313599],"about_ca_topic_score_codex":0.000031478925,"about_ca_topic_score_gemma":0.000021086777,"teacher_disagreement_score":0.28354585,"about_ca_system_score_codex":0.000010172889,"about_ca_system_score_gemma":0.00009086424,"threshold_uncertainty_score":0.9996903},"labels":[],"label_agreement":null},{"id":"W2133265454","doi":"10.1016/j.vaccine.2012.10.016","title":"Immune response to vaccine adjuvants during the first year of life","year":2012,"lang":"en","type":"review","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Immune system; Vaccination; Immunization; Immunology; Innate immune system; Adjuvant; Vaccine adjuvant; Biology; Population; Immunity; Medicine","score_opus":0.01865986747453652,"score_gpt":0.2660286467280311,"score_spread":0.2473687792534946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133265454","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.014882072,0.9826538,0.0000045905513,0.00037969163,0.0009477454,0.0009647638,0.000038713486,0.000055088905,0.000073549934],"genre_scores_gemma":[0.0071275616,0.9866556,0.000012844347,0.000040877854,0.00018636488,0.00011528836,0.00012305104,0.00007381664,0.005664606],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99721366,0.0007343283,0.0011816169,0.00030163265,0.00006026054,0.00050852774],"domain_scores_gemma":[0.9975787,0.00058916677,0.00062061386,0.0010730647,0.00009811939,0.000040359526],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012287378,0.0004412242,0.0016598549,0.0004140516,0.00023031268,0.000012025258,0.00068449817,0.00051093375,0.0015329379],"category_scores_gemma":[0.0005470248,0.0002772197,0.0004401374,0.00049310975,0.000012956849,0.00009672509,0.0003608658,0.000525219,0.004124248],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.027382497,0.0006253867,0.00047832646,0.023257991,0.0049658488,0.000021400623,0.0019870533,0.000006402437,0.03870707,0.00026339534,0.019033898,0.88327074],"study_design_scores_gemma":[0.001167475,0.00013991419,0.00654795,0.0024335799,0.00046722736,0.000071524824,0.00003504304,4.3806438e-8,0.0015863456,0.000001161557,0.9872624,0.00028729395],"about_ca_topic_score_codex":0.00003346305,"about_ca_topic_score_gemma":0.000009646092,"teacher_disagreement_score":0.9682285,"about_ca_system_score_codex":0.0000851368,"about_ca_system_score_gemma":0.00017068854,"threshold_uncertainty_score":0.999968},"labels":[],"label_agreement":null},{"id":"W2133309260","doi":"10.4049/jimmunol.0901800","title":"Cysteinyl-Leukotriene Receptor Type 1 Expression and Function Is Down-Regulated during Monocyte-Derived Dendritic Cell Maturation with Zymosan: Involvement of IL-10 and Prostaglandins","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Zymosan; Cell biology; TLR2; Chemistry; Chemotaxis; Leukotriene B4; Cyclooxygenase; Receptor; Biology; Signal transduction; Immunology; Inflammation; TLR4; Biochemistry; Enzyme","score_opus":0.006565545063767675,"score_gpt":0.1956888365029941,"score_spread":0.18912329143922643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133309260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9893518,0.009707115,0.0000990605,0.0003971596,0.00020136127,0.00020205733,0.0000026666291,0.000011114414,0.000027658047],"genre_scores_gemma":[0.99742967,0.0019334692,0.00007325535,0.00003608937,0.000020051111,0.0000016494596,0.00002166685,0.000008478,0.00047568427],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890107,0.0003182679,0.00045089898,0.000103043945,0.000050476465,0.00017624635],"domain_scores_gemma":[0.99897975,0.00007819403,0.0005369585,0.0001669682,0.0002247845,0.000013357072],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003203975,0.00014320634,0.00028193972,0.00016068194,0.00018171576,0.000011954954,0.0001012837,0.00018346353,0.000104271465],"category_scores_gemma":[0.00002993193,0.00008852404,0.000029997327,0.00011742077,0.00017014344,0.00021763347,0.0000385668,0.00025173687,0.000011909733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01486668,0.000055124532,0.000109973065,0.000024298515,0.00012730982,0.0000018021549,0.0018372027,0.000009486135,0.9815684,0.000019108244,0.0001563886,0.0012242208],"study_design_scores_gemma":[0.0032941622,0.0030644217,0.026951395,0.00014835951,0.00010530454,0.00036238265,0.0010304064,0.0000053665894,0.9638681,0.000053716725,0.0010184969,0.00009790468],"about_ca_topic_score_codex":0.000009764909,"about_ca_topic_score_gemma":0.0000015004,"teacher_disagreement_score":0.026841423,"about_ca_system_score_codex":0.000038169987,"about_ca_system_score_gemma":0.00005243977,"threshold_uncertainty_score":0.36099055},"labels":[],"label_agreement":null},{"id":"W2133412753","doi":"10.1242/bio.2012554","title":"Phenotyping of Nod1/2 double deficient mice and characterization of Nod1/2 in systemic inflammation and associated renal disease","year":2012,"lang":"en","type":"article","venue":"Biology Open","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Nierstichting","keywords":"NOD1; NOD2; Inflammation; Biology; Immunology; Septic shock; Vascular permeability; Kidney; Endocrinology; Internal medicine; Immune system; Sepsis; Medicine; Innate immune system","score_opus":0.01756128739869596,"score_gpt":0.25366209175759014,"score_spread":0.2361008043588942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2133412753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976734,0.0014427183,0.00007438469,0.00007550456,0.0001475133,0.00044274374,0.000023342098,0.0000074966056,0.00011292356],"genre_scores_gemma":[0.99920213,0.00014166709,0.000010291552,0.000011641065,0.000010550912,0.00002463227,0.0004815015,0.000005528862,0.00011206336],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990049,0.00029366658,0.00038611944,0.0001273424,0.000014511247,0.00017343422],"domain_scores_gemma":[0.99941796,0.00007520644,0.0003249644,0.000106501895,0.000059536567,0.000015855847],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068045175,0.00008905275,0.0002531197,0.00012374637,0.000054250682,0.0000070777514,0.00010436292,0.00017111676,0.00002605602],"category_scores_gemma":[0.000088118555,0.000080037935,0.000016854225,0.000100030804,0.00010823626,0.00024405526,0.00013289216,0.00007327392,0.000008739184],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000720816,0.000044248456,0.07421064,0.000046141584,0.00003800157,1.17819766e-7,0.0006957738,0.00000126875,0.92069733,0.00149222,0.0000035829266,0.002049845],"study_design_scores_gemma":[0.00239768,0.00006948482,0.62036806,0.00022746575,0.000046479225,0.000009858839,0.00012802758,0.000074133815,0.37591133,0.000031611296,0.00060591823,0.00012997584],"about_ca_topic_score_codex":0.00014302693,"about_ca_topic_score_gemma":0.000011539318,"teacher_disagreement_score":0.5461574,"about_ca_system_score_codex":0.000023803586,"about_ca_system_score_gemma":0.000045229444,"threshold_uncertainty_score":0.32638523},"labels":[],"label_agreement":null},{"id":"W2134596993","doi":"10.1152/ajplung.00173.2001","title":"Distribution of intranasal instillations in mice: effects of volume, time, body position, and anesthesia","year":2002,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":345,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Joseph’s Healthcare Hamilton; McMaster University; St. Joseph's Hospital","funders":"","keywords":"Nasal administration; Distribution (mathematics); Respiratory tract; Gastrointestinal tract; Volume of distribution; Anesthesia; Chemistry; Respiratory system; Medicine; Nuclear medicine; Pharmacokinetics; Pharmacology; Internal medicine","score_opus":0.0015001983751183352,"score_gpt":0.18193110641025767,"score_spread":0.18043090803513934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134596993","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99465054,0.0045123943,0.0004018791,0.00020215205,0.00006292923,0.000142663,0.000004873272,0.0000053074664,0.0000172509],"genre_scores_gemma":[0.999082,0.0006625008,0.00006726174,0.000057797697,0.000017368864,0.0000032911976,0.000079389676,0.000011014749,0.00001934422],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983577,0.00062582793,0.0005751655,0.00018317452,0.000039129813,0.00021896986],"domain_scores_gemma":[0.9988647,0.0001746155,0.0006379784,0.0001438829,0.00015097638,0.000027814878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016822267,0.00016926067,0.00066215737,0.00019871874,0.000053712094,0.0000026110001,0.00011752912,0.0001460805,0.00003388886],"category_scores_gemma":[0.00006942861,0.00015314539,0.00011488823,0.00021663046,0.0008400705,0.00009174803,0.00003600701,0.00023600543,0.00000445538],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036768572,0.00014666062,0.0002691608,0.00007809122,0.00018540569,0.000011957243,0.000290531,0.00006294602,0.99691916,0.00030519313,0.0001344605,0.0012287545],"study_design_scores_gemma":[0.001473972,0.0018406737,0.13385534,0.000105924664,0.0001469993,0.00023610245,0.00008306297,0.000329241,0.86122143,0.000270459,0.00026879853,0.00016800156],"about_ca_topic_score_codex":0.00003823312,"about_ca_topic_score_gemma":3.0615058e-7,"teacher_disagreement_score":0.13569772,"about_ca_system_score_codex":0.000019916952,"about_ca_system_score_gemma":0.000030547537,"threshold_uncertainty_score":0.62450874},"labels":[],"label_agreement":null},{"id":"W2134969728","doi":"10.1093/jac/46.1.19","title":"Apoptosis, oxidative metabolism and interleukin-8 production in human neutrophils exposed to azithromycin: effects of Streptococcus pneumoniae","year":2000,"lang":"en","type":"article","venue":"Journal of Antimicrobial Chemotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Streptococcus pneumoniae; Azithromycin; Apoptosis; Microbiology; Biology; Tumor necrosis factor alpha; Immunology; Interleukin; Cytokine; Antibiotics; Biochemistry","score_opus":0.005419391290292546,"score_gpt":0.23295994279644391,"score_spread":0.22754055150615138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2134969728","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99762475,0.0004889021,0.000016744172,0.0010432606,0.00035841312,0.00041940162,0.0000018766771,0.000009084351,0.000037574235],"genre_scores_gemma":[0.99854624,0.0007588374,0.00010930435,0.0002110584,0.00008363684,0.000004105849,0.0000051205357,0.000019124569,0.00026254597],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986367,0.00023988307,0.0006761867,0.00018286073,0.000046645488,0.0002177208],"domain_scores_gemma":[0.9992552,0.000054750573,0.00037897265,0.00016366947,0.00012375254,0.000023651057],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032057558,0.00018818499,0.00053792616,0.00035734283,0.000067466455,0.00001689304,0.00016713598,0.00015358091,0.00013994565],"category_scores_gemma":[0.000037287296,0.00016134449,0.00011740972,0.00021644619,0.000114108945,0.00025529627,0.000017169446,0.00028828884,0.000011950348],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009219294,0.00022004367,0.00026192993,0.000044077406,0.00015435691,0.0000031987447,0.0025537212,0.000021395337,0.9786321,0.000011866112,0.00075460016,0.016420785],"study_design_scores_gemma":[0.0028472166,0.00052475685,0.016187055,0.00029679606,0.0000329657,0.00006295409,0.000072247,2.1257948e-7,0.9768381,0.000026107486,0.002969137,0.00014242985],"about_ca_topic_score_codex":0.000020687508,"about_ca_topic_score_gemma":0.0000042695347,"teacher_disagreement_score":0.016278354,"about_ca_system_score_codex":0.00004232758,"about_ca_system_score_gemma":0.000046396006,"threshold_uncertainty_score":0.6579438},"labels":[],"label_agreement":null},{"id":"W2135021119","doi":"10.1016/j.jamcollsurg.2005.06.070","title":"Hemorrhagic shock recruits Toll-like receptor 4 to the plasma membrane in macrophages: A novel mechanism of cell priming for LPS signaling","year":2005,"lang":"en","type":"article","venue":"Journal of the American College of Surgeons","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"Medicine; Priming (agriculture); Cell biology; Mechanism (biology); Receptor; Toll-like receptor; Shock (circulatory); Toll; Hemorrhagic shock; Immunology; Innate immune system; Internal medicine","score_opus":0.014968831086315864,"score_gpt":0.23636184176181294,"score_spread":0.22139301067549708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135021119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99397486,0.00029954084,0.0007684796,0.0037317504,0.00057524996,0.00048133178,0.000087857305,0.0000045291017,0.0000763849],"genre_scores_gemma":[0.99536896,0.000093577364,0.0027773886,0.00022911179,0.000042579373,0.000013853375,0.0000022645343,0.000019103532,0.0014531559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998258,0.00028728315,0.00093029824,0.00012553956,0.00010849956,0.00029040102],"domain_scores_gemma":[0.99723744,0.0008915602,0.0013446361,0.00026771112,0.0002331275,0.00002551884],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013668742,0.00015843764,0.00060678343,0.0002948035,0.0001394624,0.0000055788773,0.0005191345,0.00007587742,0.00007271813],"category_scores_gemma":[0.000318282,0.00010116526,0.0003171741,0.0005238402,0.00013596374,0.000098078126,0.00009152247,0.00028227584,0.000009185645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018729493,0.00016069756,0.000046274847,0.000030088282,0.0001100141,0.0000022043782,0.0007504361,0.0009858784,0.9924054,0.00016609467,0.0014917745,0.0019781527],"study_design_scores_gemma":[0.0013722427,0.00044205927,0.0001821241,0.00017639223,0.00007477057,0.00015042374,0.0023553723,0.00012801331,0.979254,0.000017816345,0.015732631,0.000114174836],"about_ca_topic_score_codex":0.000056498517,"about_ca_topic_score_gemma":0.00005151453,"teacher_disagreement_score":0.014240857,"about_ca_system_score_codex":0.00009412651,"about_ca_system_score_gemma":0.00025887552,"threshold_uncertainty_score":0.41253993},"labels":[],"label_agreement":null},{"id":"W2135452775","doi":"10.4049/jimmunol.175.10.6702","title":"The MHC of the Duck (<i>Anas platyrhynchos</i>) Contains Five Differentially Expressed Class I Genes","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":94,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Biology; Genetics; Gene; MHC class I; Locus (genetics); Major histocompatibility complex; Anas; Allele; MHC class II","score_opus":0.007097855730792605,"score_gpt":0.21415285452346247,"score_spread":0.20705499879266986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135452775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96433645,0.02598487,0.00009773561,0.0076524094,0.0014091542,0.00020276986,0.0000052115365,0.000009734487,0.00030166746],"genre_scores_gemma":[0.99175894,0.0043657534,0.000010636428,0.00020561811,0.00011794936,0.000004177874,0.0000030695546,0.000014971286,0.003518884],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997306,0.0013017068,0.0008607594,0.00009169354,0.00008508695,0.0003547919],"domain_scores_gemma":[0.996878,0.0011267107,0.001101622,0.0005900033,0.0002928975,0.000010756025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010591848,0.000187917,0.00038346567,0.00008447296,0.0005692022,0.000016950517,0.0012204583,0.0002446269,0.00014848929],"category_scores_gemma":[0.00028381788,0.0000830836,0.00026710826,0.000118131735,0.0008290735,0.00013425098,0.00021434332,0.00072772487,0.00007325565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021382496,0.000070378934,0.000097471035,0.0000035632,0.0007779165,0.0000012694005,0.0023789564,0.00008121185,0.9789544,0.0011261539,0.0025452198,0.011825226],"study_design_scores_gemma":[0.0020904837,0.00040855148,0.017620847,0.00005337385,0.00018537723,0.00048469228,0.002063482,0.000009003288,0.8392379,0.00035677632,0.13737395,0.00011551786],"about_ca_topic_score_codex":0.000058695707,"about_ca_topic_score_gemma":0.00009443652,"teacher_disagreement_score":0.13971645,"about_ca_system_score_codex":0.000060436865,"about_ca_system_score_gemma":0.00018822846,"threshold_uncertainty_score":0.43779007},"labels":[],"label_agreement":null},{"id":"W2135637410","doi":"10.1097/shk.0b013e31825a1982","title":"Apocynin Attenuates Lipopolysaccharide-Induced Lung Injury in an Isolated and Perfused Rat Lung Model","year":2012,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Apocynin; Bronchoalveolar lavage; Myeloperoxidase; Medicine; Lipopolysaccharide; Tumor necrosis factor alpha; Lung; Pharmacology; Immunology; NADPH oxidase; Endocrinology; Internal medicine; Inflammation; Oxidative stress","score_opus":0.014453902948391755,"score_gpt":0.270501253382975,"score_spread":0.2560473504345832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2135637410","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968246,0.001964141,0.000217123,0.00016613168,0.00036247267,0.0002395885,0.0000037870277,0.00006947483,0.00015264038],"genre_scores_gemma":[0.9987994,0.00006980361,0.000048365124,0.00012445923,0.000036467296,0.000015972584,0.00006909242,0.0000214214,0.00081506063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878407,0.00023512855,0.00029919686,0.00020909509,0.000025051937,0.0004474821],"domain_scores_gemma":[0.9995493,0.000050633615,0.00007787623,0.0002484954,0.000039551767,0.000034132296],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003662018,0.00017925787,0.00023640925,0.00018629058,0.0001351045,0.000021575566,0.00012311866,0.00030558638,0.00013518879],"category_scores_gemma":[0.000048997194,0.00016589333,0.000038143615,0.00010050842,0.000047806338,0.0005715602,0.00007048896,0.00031047492,0.00011944679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044507868,0.000057070305,0.010499405,0.000013013062,0.00003139954,7.241794e-7,0.0020292068,0.000013142277,0.98269314,0.00026143744,0.00047523316,0.00348113],"study_design_scores_gemma":[0.0014800339,0.00017643014,0.0054836995,0.00005189063,0.000053530937,0.000031362295,0.00040462258,0.026450356,0.96500355,0.000082305356,0.0003805141,0.0004016954],"about_ca_topic_score_codex":0.00008834206,"about_ca_topic_score_gemma":0.000018858394,"teacher_disagreement_score":0.026437214,"about_ca_system_score_codex":0.00005712133,"about_ca_system_score_gemma":0.00004961022,"threshold_uncertainty_score":0.67649335},"labels":[],"label_agreement":null},{"id":"W2136174903","doi":"10.1016/j.ajpath.2012.05.011","title":"Kinetics of Proinflammatory Monocytes in a Model of Multiple Sclerosis and Its Perturbation by Laquinimod","year":2012,"lang":"en","type":"article","venue":"American Journal Of Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Alberta Innovates; Teva Pharmaceutical Industries","keywords":"Proinflammatory cytokine; Multiple sclerosis; Kinetics; Monocyte; Medicine; Neuroscience; Immunology; Inflammation; Physics; Biology; Classical mechanics","score_opus":0.021139632631365594,"score_gpt":0.22796897379187425,"score_spread":0.20682934116050866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136174903","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935498,0.0054868604,0.00069016597,0.00008127626,0.00006808146,0.000076801305,0.00000789365,0.000002695725,0.000036394005],"genre_scores_gemma":[0.99878794,0.00059104833,0.0005323869,0.000022642262,0.0000102818985,0.0000030612428,0.0000046952086,0.000007898275,0.000040063638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887323,0.00029486127,0.0005639297,0.0000646818,0.000031846983,0.00017144054],"domain_scores_gemma":[0.99883157,0.00018174053,0.00076817255,0.00008235392,0.00011879835,0.000017353093],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038024585,0.0000872412,0.0003755902,0.00020039592,0.00001390732,0.000001170904,0.0000877967,0.00008876325,0.0000096281465],"category_scores_gemma":[0.00023661874,0.00007545327,0.000052153144,0.00009381588,0.00025254206,0.00014676541,0.000030165244,0.00015174445,0.0000024285248],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004741811,0.0001276596,0.008962344,0.00001547321,0.000031677046,0.0000010511123,0.0022547347,0.00011321933,0.9799842,0.00014013003,0.000036693447,0.007858612],"study_design_scores_gemma":[0.0012328071,0.001034523,0.030048318,0.000058891943,0.000034944092,0.00016337504,0.0008125745,0.0003876514,0.96600145,0.00005892816,0.000080617516,0.00008590278],"about_ca_topic_score_codex":0.000006425649,"about_ca_topic_score_gemma":0.0000010453192,"teacher_disagreement_score":0.021085974,"about_ca_system_score_codex":0.000019748824,"about_ca_system_score_gemma":0.0000263179,"threshold_uncertainty_score":0.30768952},"labels":[],"label_agreement":null},{"id":"W2136253179","doi":"10.4049/jimmunol.176.11.6982","title":"STAT1 Regulates IFN-αβ- and IFN-γ-Dependent Control of Infection with <i>Chlamydia pneumoniae</i> by Nonhemopoietic Cells","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Vetenskapsrådet; Karolinska Institutet; York University","keywords":"STAT1; Biology; Chlamydophila pneumoniae; Interferon; Microbiology; Intracellular parasite; CD8; Chlamydia; Indoleamine 2,3-dioxygenase; Immunity; Streptococcus pneumoniae; Virology; Immunology; Chlamydiaceae; Immune system","score_opus":0.001944852576030677,"score_gpt":0.17011302590688887,"score_spread":0.1681681733308582,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136253179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9843296,0.01328925,0.0010766569,0.0005792137,0.0003551384,0.0001794599,0.000009155167,0.000012790908,0.00016873547],"genre_scores_gemma":[0.99743766,0.0013464235,0.000018127057,0.00005052052,0.000027559732,0.0000027849603,0.000008673075,0.000016657646,0.0010915898],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981215,0.0007533939,0.00067742163,0.000104079285,0.00006427946,0.00027930556],"domain_scores_gemma":[0.99823695,0.0004044023,0.0008817289,0.00023194423,0.00023396872,0.000011015627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00089782395,0.00018493056,0.00044682968,0.00015268745,0.0001502415,0.000011436863,0.0001811571,0.0002268605,0.000074189855],"category_scores_gemma":[0.000033300552,0.0001154917,0.00007723726,0.00010703801,0.0005097144,0.00016393364,0.000040884883,0.00045061496,0.000027788354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022785694,0.00011325654,0.0013390164,0.000013059771,0.00040284544,0.0000042393476,0.0003280174,0.0001277279,0.99300504,0.00012265833,0.00093844556,0.0013271087],"study_design_scores_gemma":[0.0040193866,0.0015349169,0.025170133,0.000061027156,0.0002641404,0.0018016514,0.00019307047,0.000007649338,0.9615962,0.00032490815,0.0048805494,0.00014638912],"about_ca_topic_score_codex":0.00035311523,"about_ca_topic_score_gemma":0.000033818684,"teacher_disagreement_score":0.031408876,"about_ca_system_score_codex":0.000050440703,"about_ca_system_score_gemma":0.00010232987,"threshold_uncertainty_score":0.47096148},"labels":[],"label_agreement":null},{"id":"W2136369336","doi":"10.2174/156720109787048221","title":"Enhancement of Immunoprotective Effect of CpG-ODN by Formulation with Polyphosphazenes Against E. coli Septicemia in Neonatal Chickens","year":2009,"lang":"en","type":"article","venue":"Current Drug Delivery","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"College of Pharmacy and Nutrition, University of Saskatchewan; University of Saskatchewan","keywords":"CpG Oligodeoxynucleotide; Biology; CpG site; Saline; Microbiology; Emulsion; Liposome; Biochemistry","score_opus":0.0037576478188627764,"score_gpt":0.22268753605630023,"score_spread":0.21892988823743745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136369336","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9831991,0.015477984,0.0003123892,0.000027846478,0.00022788129,0.0006128356,0.00001926649,0.000016919268,0.00010573837],"genre_scores_gemma":[0.9990899,0.00049577735,0.0000108913455,0.0000094999095,0.0000082282695,0.000038813534,0.0002651781,0.000008062632,0.00007364292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885046,0.0002110977,0.00042620496,0.00019086801,0.00006925812,0.00025210172],"domain_scores_gemma":[0.99927837,0.00011609303,0.00029914564,0.00019655551,0.0000983606,0.000011497513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032029173,0.00018603455,0.00034975045,0.00015999256,0.000059972066,0.0000045153843,0.00012724905,0.000107089596,0.00004799336],"category_scores_gemma":[0.000030362351,0.00015202079,0.00007929915,0.00018780086,0.00008450908,0.00019864296,0.000029810732,0.00021648347,0.000025804604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036646677,0.00013058244,0.0010063596,0.000087291446,0.00008318917,9.903027e-7,0.0011687968,0.00003359001,0.8653675,0.00009128456,0.00018723453,0.12817855],"study_design_scores_gemma":[0.0027607912,0.0008472371,0.005363745,0.00036393997,0.00003826647,0.0000023118873,0.00012345554,0.00006140957,0.9891591,0.00003029807,0.0010928331,0.00015661493],"about_ca_topic_score_codex":0.00007218482,"about_ca_topic_score_gemma":0.0000077234245,"teacher_disagreement_score":0.12802194,"about_ca_system_score_codex":0.00008691838,"about_ca_system_score_gemma":0.00006719776,"threshold_uncertainty_score":0.6199228},"labels":[],"label_agreement":null},{"id":"W2136437831","doi":"10.1084/jem.20031237","title":"Toll-like Receptors Induce a Phagocytic Gene Program through p38","year":2003,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":433,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"National Institute of Allergy and Infectious Diseases; National Center for Research Resources; National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; Canadian Institutes of Health Research; Leukemia and Lymphoma Society; Stop Cancer; U.S. Public Health Service; U.S. Department of Defense","keywords":"Phagocytosis; Biology; Cell biology; Innate immune system; Receptor; TLR2; Microbiology; TLR9; Toll-like receptor; Signal transduction; Macrophage; Scavenger receptor; Immune system; TLR4; Immunology; Gene; Gene expression; Biochemistry","score_opus":0.02474793688489882,"score_gpt":0.3093915593644403,"score_spread":0.28464362247954145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136437831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9549676,0.038028665,0.00007815802,0.0007431593,0.0031115348,0.00026982787,2.2191529e-7,0.000019313116,0.0027814773],"genre_scores_gemma":[0.9973361,0.0005446139,0.00021622934,0.000391187,0.000128617,0.000008217499,0.000005147921,0.000013630842,0.0013562477],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99855053,0.0005274562,0.00052282494,0.00007844697,0.00009215233,0.00022856935],"domain_scores_gemma":[0.99921715,0.0001445044,0.00034988386,0.00019040727,0.000075283555,0.00002278342],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00083230296,0.00014921575,0.0002991325,0.00007392667,0.00015891292,0.000005010888,0.0002242824,0.00010370499,0.0012561093],"category_scores_gemma":[0.00014574997,0.00008191096,0.00007271651,0.00014151301,0.00031512932,0.00016282564,0.000024215675,0.0003288867,0.000102507474],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006280942,0.00018093389,0.000015270103,0.0000029802468,0.0001582914,0.000009728784,0.0056289337,0.000001273616,0.98190975,0.00029821135,0.009026211,0.0021403155],"study_design_scores_gemma":[0.0024934623,0.0021657238,0.000065991226,0.0000777655,0.00006903294,0.0018266534,0.005803724,4.8846584e-7,0.86431557,0.000075554606,0.1230252,0.000080811405],"about_ca_topic_score_codex":0.000022274811,"about_ca_topic_score_gemma":4.399677e-7,"teacher_disagreement_score":0.11759417,"about_ca_system_score_codex":0.00009004529,"about_ca_system_score_gemma":0.00007664565,"threshold_uncertainty_score":0.99965686},"labels":[],"label_agreement":null},{"id":"W2136807721","doi":"10.1093/intimm/dxh295","title":"Ets-1 deficiency leads to altered B cell differentiation, hyperresponsiveness to TLR9 and autoimmune disease","year":2005,"lang":"en","type":"article","venue":"International Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":118,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"International Myeloma Foundation","keywords":"TLR9; CD40; Adoptive cell transfer; Biology; B cell; Cellular differentiation; Cell biology; Molecular biology; Immunology; Immune system; T cell; Antibody; Cytotoxic T cell; DNA methylation; Gene expression; In vitro; Gene; Genetics","score_opus":0.007789708861918784,"score_gpt":0.24367801645834622,"score_spread":0.23588830759642743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2136807721","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98209906,0.0028613778,0.0016101262,0.010082702,0.0019559574,0.00034084157,0.00003109888,0.00009544984,0.00092337886],"genre_scores_gemma":[0.9906399,0.00012157696,0.00021701698,0.001118495,0.000088225985,0.000095852985,0.00019240822,0.000023029623,0.007503483],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984215,0.00023511935,0.00046488584,0.00041266932,0.000078152436,0.00038768625],"domain_scores_gemma":[0.9990556,0.00017451514,0.00011825049,0.00035749312,0.00024162624,0.00005247293],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022093649,0.00023128437,0.00025092263,0.00049260224,0.000208711,0.000047784648,0.000464198,0.00016719518,0.0008720254],"category_scores_gemma":[0.0003311476,0.00022861573,0.0000773136,0.00016401232,0.000111170775,0.00023549626,0.0003084766,0.00021962203,0.0030785715],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016761759,0.00018614728,0.002139283,0.000006159551,0.00008369134,0.0000041340286,0.0009299918,0.00018327562,0.9727855,0.0025693895,0.001398346,0.018037917],"study_design_scores_gemma":[0.0016789881,0.00025512846,0.5225847,0.000042455704,0.00003945191,0.0000678235,0.00013123012,0.00006428646,0.25597218,0.00014854086,0.21862857,0.0003866921],"about_ca_topic_score_codex":0.000048242437,"about_ca_topic_score_gemma":0.000016144082,"teacher_disagreement_score":0.7168133,"about_ca_system_score_codex":0.00013591831,"about_ca_system_score_gemma":0.00009325011,"threshold_uncertainty_score":0.99769765},"labels":[],"label_agreement":null},{"id":"W2137781960","doi":"10.4049/jimmunol.179.7.4711","title":"Differential Role of TLR- and RLR-Signaling in the Immune Responses to Influenza A Virus Infection and Vaccination","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":306,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Biology; Virus; Immune system; Hemagglutinin (influenza); Virology; Influenza A virus; Interferon; Signal transduction; TLR7; Vaccination; Innate immune system; Immunology; Acquired immune system; Cell biology; Toll-like receptor","score_opus":0.010012898606361526,"score_gpt":0.2616510702710975,"score_spread":0.251638171664736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137781960","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865993,0.012269148,0.00038905695,0.00032061661,0.0002031327,0.0001681112,9.3566746e-7,0.00000449623,0.00004517482],"genre_scores_gemma":[0.9988437,0.0010074528,0.00001634862,0.000072150426,0.000023591278,0.0000019708414,0.0000013670312,0.000006258456,0.000027103046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99810934,0.00094634655,0.0006415596,0.00006736321,0.000046347843,0.00018902954],"domain_scores_gemma":[0.9983422,0.0009543453,0.00042415672,0.00014961572,0.00012216953,0.0000074817876],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002624268,0.00010731991,0.00025133655,0.0004042169,0.00013965958,0.000010946155,0.00017320274,0.00015762735,0.000042066655],"category_scores_gemma":[0.00041236344,0.00006434666,0.000045750916,0.00018117433,0.000118141565,0.00014064198,0.00007277152,0.0003935175,0.0000060278753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005666302,0.000051108724,0.002943247,0.000005714244,0.000108645196,0.0000018840472,0.0060586203,0.000008117587,0.9666613,0.00036018254,0.0000072374737,0.018127643],"study_design_scores_gemma":[0.00095854624,0.0005804566,0.4468745,0.00003307978,0.000043759286,0.0005122906,0.0014249566,0.0000014727652,0.54823536,0.00030328048,0.0009827755,0.00004955388],"about_ca_topic_score_codex":0.00025184525,"about_ca_topic_score_gemma":0.0000609502,"teacher_disagreement_score":0.44393125,"about_ca_system_score_codex":0.000031033196,"about_ca_system_score_gemma":0.000036730104,"threshold_uncertainty_score":0.26239806},"labels":[],"label_agreement":null},{"id":"W2137904098","doi":"10.4049/jimmunol.167.11.6601","title":"Involvement of Phosphoinositide 3-Kinases in Neutrophil Activation and the Development of Acute Lung Injury","year":2001,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":194,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Amgen (Canada); University of Toronto; Ontario Institute for Cancer Research","funders":"National Heart, Lung, and Blood Institute","keywords":"Proinflammatory cytokine; Kinase; Protein kinase B; Phosphoinositide 3-kinase; PI3K/AKT/mTOR pathway; Tumor necrosis factor alpha; Immunology; Phosphorylation; Pulmonary edema; Signal transduction; Lung; Inflammation; Medicine; Biology; Chemistry; Cell biology; Internal medicine","score_opus":0.008466832390217787,"score_gpt":0.23551181294525075,"score_spread":0.22704498055503297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2137904098","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928778,0.0056464016,0.00021120004,0.0008713887,0.00016911147,0.00015247706,8.340387e-7,0.0000023509692,0.000068432295],"genre_scores_gemma":[0.9966716,0.003121986,0.000058833597,0.00005524791,0.000008392206,0.0000036660008,0.0000040085806,0.000005187415,0.00007105741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998414,0.00055264065,0.0007911908,0.000051913546,0.000043633772,0.00014661187],"domain_scores_gemma":[0.9985481,0.0003732608,0.0007778632,0.00015781143,0.000138678,0.0000042858337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012572462,0.00009690415,0.0003252843,0.00018342267,0.000091229806,0.0000027183457,0.00023973816,0.00009945245,0.000043854794],"category_scores_gemma":[0.00007204394,0.000053558077,0.00005576912,0.00014802189,0.0004028183,0.0001155687,0.00009122931,0.00027744754,0.000002780522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009840999,0.00007306824,0.0012154166,0.000009791826,0.00063018507,0.0000014761515,0.0049199606,0.000010938053,0.9743585,0.00061021815,0.00007032715,0.008259123],"study_design_scores_gemma":[0.0028773234,0.0002933879,0.07137684,0.00010590738,0.00009352358,0.00016080389,0.0012691156,0.0000035423,0.9226341,0.00024296298,0.00088842557,0.000054051874],"about_ca_topic_score_codex":0.0000715556,"about_ca_topic_score_gemma":0.00000966676,"teacher_disagreement_score":0.070161425,"about_ca_system_score_codex":0.000048518206,"about_ca_system_score_gemma":0.0001280118,"threshold_uncertainty_score":0.21840349},"labels":[],"label_agreement":null},{"id":"W2138035164","doi":"10.1128/iai.01662-06","title":"Surface Expression of Toll-Like Receptor 9 Is Upregulated on Intestinal Epithelial Cells in Response to Pathogenic Bacterial DNA","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":149,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Alberta","funders":"Fondation pour la Recherche Médicale; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Biology; Salmonella enterica; Microbiology; Secretion; TLR9; Toll-Like Receptor 9; Molecular biology; Gene expression; Salmonella; Gene; Bacteria; DNA methylation","score_opus":0.010604075586078012,"score_gpt":0.24512586484603768,"score_spread":0.23452178925995967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138035164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998198,0.000051101262,0.00018021534,0.000065217915,0.0010237001,0.0002672181,0.000018785724,0.000040459672,0.00015535194],"genre_scores_gemma":[0.9991726,0.000046271987,0.000058088604,0.00007449477,0.000018128216,0.0000040335112,0.000040939736,0.000011491449,0.00057394104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982435,0.0008498552,0.00044245776,0.00018290675,0.0000429589,0.00023832604],"domain_scores_gemma":[0.99910796,0.0003742664,0.00014385102,0.00025781244,0.000088308036,0.000027780556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015592166,0.00015850666,0.00023171146,0.00026008175,0.00014538306,0.000012064299,0.000083509236,0.0002598011,0.0005596516],"category_scores_gemma":[0.00024977018,0.0001476889,0.00006176064,0.00024267191,0.00008753544,0.000119626355,0.000077613055,0.00030577165,0.00019896234],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017960701,0.00016132434,0.00085691456,0.000010465536,0.0000136558165,0.0000012375456,0.0012295942,0.000012696416,0.9753935,0.000007629919,0.00032491298,0.0040273787],"study_design_scores_gemma":[0.0013780307,0.00077433424,0.115154214,0.000106140455,0.0000066097905,0.000017480894,0.00008871596,0.000002194449,0.8693355,0.000009999008,0.012994891,0.00013189799],"about_ca_topic_score_codex":0.00033195835,"about_ca_topic_score_gemma":0.000026136731,"teacher_disagreement_score":0.1142973,"about_ca_system_score_codex":0.000068138375,"about_ca_system_score_gemma":0.00004836405,"threshold_uncertainty_score":0.61277926},"labels":[],"label_agreement":null},{"id":"W2138102959","doi":"10.1074/jbc.m201366200","title":"Involvement of Toll-like Receptor (TLR) 2 and TLR4 in Cell Activation by Mannuronic Acid Polymers","year":2002,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":195,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research","funders":"Norges Forskningsråd; Kreftforeningen","keywords":"Toll; TLR4; Toll-like receptor; Receptor; Chemistry; Cell biology; Innate immune system; Immunology; Biochemistry; Biology","score_opus":0.012932933498988004,"score_gpt":0.20667052808774666,"score_spread":0.19373759458875867,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138102959","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99124664,0.0077219787,0.000014099279,0.0002972451,0.000076284174,0.000045215274,0.000004082994,0.0000041503017,0.00059031683],"genre_scores_gemma":[0.997445,0.0015512963,0.00002898256,0.000062400206,0.000019687324,0.0000017052486,0.000023074692,0.0000034150062,0.00086443295],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991882,0.00008363931,0.0004461089,0.00009930518,0.00003401858,0.00014876145],"domain_scores_gemma":[0.9994306,0.00007100253,0.00036307704,0.00007604565,0.000041422623,0.00001786402],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022626572,0.000098427394,0.00022879931,0.000038729293,0.000028781904,0.000004499858,0.000111931105,0.00026581722,0.0013484082],"category_scores_gemma":[0.00006463709,0.000072018105,0.00006386297,0.00006604794,0.00010827703,0.00007463634,0.00003268033,0.00026933904,0.0000106297675],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027143033,0.00014526997,0.00094128866,0.000024721458,0.000028062266,0.0000014861538,0.00010957442,6.3670905e-7,0.9929146,0.0000018873423,0.0023483573,0.0032126945],"study_design_scores_gemma":[0.0010528981,0.00025414742,0.00090835796,0.000042217627,0.000007200647,0.000026484542,0.0003088009,0.0000019339318,0.98372656,0.000012781177,0.013581879,0.00007672921],"about_ca_topic_score_codex":0.000003603101,"about_ca_topic_score_gemma":1.00743975e-7,"teacher_disagreement_score":0.011233523,"about_ca_system_score_codex":0.00004911151,"about_ca_system_score_gemma":0.000014980774,"threshold_uncertainty_score":0.99956447},"labels":[],"label_agreement":null},{"id":"W2138129058","doi":"10.1093/toxsci/kfu068","title":"Aryl Hydrocarbon Receptor (AhR) Attenuation of Subchronic Cigarette Smoke-induced Pulmonary Neutrophilia Is Associated with Retention of Nuclear RelB and Suppression of Intercellular Adhesion Molecule-1 (ICAM-1)","year":2014,"lang":"en","type":"article","venue":"Toxicological Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada); McGill University Health Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Aryl hydrocarbon receptor; RELB; Neutrophilia; Inflammation; Chemistry; Intercellular Adhesion Molecule-1; Immunology; Lung; Medicine; Pharmacology; Internal medicine; NFKB1; Biochemistry","score_opus":0.02373739927003143,"score_gpt":0.23447130194861962,"score_spread":0.2107339026785882,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138129058","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986018,0.00033647552,0.0000126896575,0.00034998666,0.00009373462,0.0002059163,0.0000034821987,0.00002182844,0.00037410422],"genre_scores_gemma":[0.99971014,0.00014466803,0.000020502774,0.000035030407,0.0000068116897,0.0000046111536,0.000033465512,0.0000057661427,0.000038991584],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984822,0.0004338073,0.00044454477,0.0002968423,0.0001342254,0.00020832679],"domain_scores_gemma":[0.99898833,0.00020832122,0.00052224105,0.00016064581,0.00010116422,0.000019272376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009809044,0.00013205678,0.00033630934,0.00012773155,0.00013248094,0.0000073201218,0.00021636885,0.00031399284,0.00018173431],"category_scores_gemma":[0.0003132721,0.000089026835,0.000070961476,0.0003175442,0.00064578326,0.00016179668,0.00008057659,0.00016778846,0.0000046984155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047008556,0.00012471047,0.0026432737,0.000024329576,0.000025942145,8.04126e-7,0.0001995062,0.000007448537,0.99444264,0.00024598785,0.000048741244,0.0017665168],"study_design_scores_gemma":[0.0005140233,0.0036527293,0.089384,0.0003177491,0.000037854512,0.000006329064,0.0001127404,0.00069176045,0.9049204,0.00020921123,0.000042313455,0.00011089647],"about_ca_topic_score_codex":0.000029267729,"about_ca_topic_score_gemma":0.0000017343178,"teacher_disagreement_score":0.08952226,"about_ca_system_score_codex":0.00003163371,"about_ca_system_score_gemma":0.000030480323,"threshold_uncertainty_score":0.3630409},"labels":[],"label_agreement":null},{"id":"W2138167941","doi":"10.1097/ccm.0b013e3181b07b78","title":"Phase 2 trial of eritoran tetrasodium (E5564), a Toll-like receptor 4 antagonist, in patients with severe sepsis*","year":2009,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":226,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Eisai","keywords":"Medicine; Placebo; Internal medicine; Sepsis; Tolerability; Proinflammatory cytokine; Immunology; Adverse effect; Gastroenterology; Inflammation; Pathology","score_opus":0.009388701819016675,"score_gpt":0.284480393267328,"score_spread":0.2750916914483113,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138167941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940896,0.0011962672,0.000038759663,0.0019755745,0.00095397426,0.00047121345,0.000030820058,0.00003243712,0.0012113715],"genre_scores_gemma":[0.99890035,0.000015671802,0.00003728371,0.0003064123,0.00011730417,0.000011621687,0.0004764252,0.000009918955,0.00012503094],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9986887,0.00021306486,0.0004665654,0.00022521357,0.00010347842,0.0003029854],"domain_scores_gemma":[0.99919426,0.00021876323,0.00006129353,0.00024867093,0.0002404482,0.00003653682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001882918,0.0001725475,0.00045457057,0.00015339139,0.00007150153,0.0000047426984,0.0001303932,0.00020865172,0.0005035118],"category_scores_gemma":[0.0005309787,0.00012497844,0.000050134167,0.00018525447,0.0003757123,0.00009943538,0.000015088249,0.0002710716,0.00003202425],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.5491234,0.006848567,0.0063259355,0.00056492334,0.00019326976,0.00008259094,0.008876254,0.000001885163,0.27988613,0.0025620046,0.024444839,0.12109018],"study_design_scores_gemma":[0.6945421,0.089927204,0.027569225,0.0013999604,0.00041943975,0.0000470937,0.007497019,0.0000035903365,0.097589016,0.00020213683,0.079826824,0.0009763594],"about_ca_topic_score_codex":0.000027465032,"about_ca_topic_score_gemma":0.000005574505,"teacher_disagreement_score":0.18229711,"about_ca_system_score_codex":0.000056969435,"about_ca_system_score_gemma":0.000077444456,"threshold_uncertainty_score":0.5513101},"labels":[],"label_agreement":null},{"id":"W2138230377","doi":"10.4049/jimmunol.1401605","title":"TRAM Is Required for TLR2 Endosomal Signaling to Type I IFN Induction","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":109,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Wellcome Trust","keywords":"Endosome; Cell biology; TLR2; Chemistry; Signal transduction; Biology","score_opus":0.019839588433517262,"score_gpt":0.2577133236561203,"score_spread":0.23787373522260305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138230377","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873238,0.0020402127,0.0047257845,0.0033498341,0.0021618821,0.0002075192,0.000001652855,0.000016622256,0.0001726685],"genre_scores_gemma":[0.9979321,0.00011971443,0.00027030995,0.000470959,0.00018045798,0.000004608336,0.0000065768377,0.000015477659,0.0009998347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853265,0.0005346875,0.0005276016,0.00008923225,0.000036247307,0.00027955056],"domain_scores_gemma":[0.9985823,0.00046595404,0.00039767186,0.00022920023,0.00031164355,0.000013227953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013413674,0.00012568706,0.00029357232,0.0001926913,0.000221795,0.000010627163,0.00034371743,0.00022312488,0.0001809929],"category_scores_gemma":[0.0005298192,0.00008528607,0.00011493003,0.00014363222,0.000114100796,0.00014089138,0.00004259562,0.00032617865,0.00023565977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033821862,0.000032002736,0.000012170757,0.000004598074,0.0002625275,4.3824014e-7,0.0016187346,0.000036632133,0.96742934,0.0005486701,0.00269876,0.02397397],"study_design_scores_gemma":[0.0015351791,0.0023886818,0.0010408461,0.000037373775,0.000103522514,0.0006053762,0.00058470375,0.000007297542,0.86669624,0.0008367863,0.12605457,0.00010940602],"about_ca_topic_score_codex":0.0000149405405,"about_ca_topic_score_gemma":0.0000016659725,"teacher_disagreement_score":0.123355806,"about_ca_system_score_codex":0.000043922904,"about_ca_system_score_gemma":0.000077573386,"threshold_uncertainty_score":0.3477865},"labels":[],"label_agreement":null},{"id":"W2138291177","doi":"10.1073/pnas.0404722101","title":"A β-oxidation-resistant lipoxin A <sub>4</sub> analog treats hapten-induced colitis by attenuating inflammation and immune dysfunction","year":2004,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":146,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Università degli Studi di Perugia; Fondation pour la Recherche Médicale","keywords":"Colitis; Tumor necrosis factor alpha; Immunology; Immune system; Cytokine; Inflammation; Pharmacology; Medicine; Chemistry","score_opus":0.019014647812110957,"score_gpt":0.249560006256382,"score_spread":0.23054535844427104,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138291177","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99610776,0.0004386271,0.0000053265294,0.0023880063,0.00003465557,0.00026035125,0.000009998668,0.000019847088,0.0007354431],"genre_scores_gemma":[0.99966383,0.00007935035,0.0000906654,0.00004725304,0.000027069718,0.00002258611,0.000003996016,0.000004995192,0.000060270893],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879706,0.000026526135,0.000513761,0.00023131502,0.00025154342,0.00017980355],"domain_scores_gemma":[0.99888706,0.00012478758,0.0006689812,0.000012739706,0.00029317936,0.000013264753],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012193104,0.00012500181,0.00019117093,0.00022305433,0.0004237441,0.000029317302,0.00025716194,0.00017738054,0.0000074840937],"category_scores_gemma":[0.00064772053,0.00009487013,0.00006426325,0.00050717493,0.0004835684,0.00067522965,0.000074947304,0.00017323242,0.000008148479],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012684641,0.000024113082,0.00019897592,0.000030997875,0.000035826637,5.61458e-9,0.00029893854,0.000016220272,0.98290074,0.012672927,0.00007802445,0.003616382],"study_design_scores_gemma":[0.0006868129,0.00012667719,0.06920017,0.000138872,0.000023296456,0.000016083033,0.00021880839,0.00003533303,0.9214732,0.007917876,0.000070954025,0.00009188993],"about_ca_topic_score_codex":0.000038336882,"about_ca_topic_score_gemma":7.36808e-7,"teacher_disagreement_score":0.0690012,"about_ca_system_score_codex":0.00007590275,"about_ca_system_score_gemma":0.000057343765,"threshold_uncertainty_score":0.38686913},"labels":[],"label_agreement":null},{"id":"W2138298422","doi":"10.4049/jimmunol.172.10.6202","title":"Toll-Like Receptor 4 Dependence of Innate and Adaptive Immunity to <i>Salmonella</i> : Importance of the Kupffer Cell Network","year":2004,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Center for Research Resources; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"TLR4; Innate immune system; Biology; Acquired immune system; Salmonella; Toll-like receptor; Immune system; Receptor; Chemokine; Microbiology; Immunology; Bacteria; Cell biology; Genetics","score_opus":0.008266445902507028,"score_gpt":0.20729997024579347,"score_spread":0.19903352434328644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138298422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9802195,0.01736838,0.00025705202,0.000848649,0.00079925434,0.0002104081,0.000004480207,0.000005018025,0.0002872809],"genre_scores_gemma":[0.99765444,0.0016239505,0.0001823967,0.00018584447,0.000024589877,0.000002264878,0.0000014554213,0.000011809453,0.0003132689],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997952,0.0008052956,0.000800436,0.00009313983,0.00006811718,0.00028099914],"domain_scores_gemma":[0.9978386,0.0003592828,0.0010602826,0.00043672905,0.0002908445,0.000014272926],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012943535,0.00016176376,0.00044155537,0.00008945203,0.0001857653,0.0000036923132,0.00067500514,0.00020705657,0.00006514688],"category_scores_gemma":[0.00014092815,0.00009425191,0.00012263097,0.0002611899,0.0005198125,0.00011441049,0.00026406228,0.0006453106,0.000021369851],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032088505,0.00007739262,0.001000482,0.0000104837,0.00027331637,0.0000018407382,0.0021803393,0.00061318174,0.99062127,0.0005133803,0.00049761514,0.0010018336],"study_design_scores_gemma":[0.0018485519,0.001335654,0.035288457,0.0001796909,0.00012016832,0.0005449538,0.0014375594,9.273145e-7,0.9552041,0.0011608745,0.0027418472,0.00013721136],"about_ca_topic_score_codex":0.00013590103,"about_ca_topic_score_gemma":0.00003377919,"teacher_disagreement_score":0.035417177,"about_ca_system_score_codex":0.00004920952,"about_ca_system_score_gemma":0.0001898019,"threshold_uncertainty_score":0.38434812},"labels":[],"label_agreement":null},{"id":"W2138541168","doi":"10.2746/042516401776249246","title":"Equine neutrophils express mRNA for tumour necrosis factor‐α, interleukin (IL)‐1β, IL‐6, IL‐8, macrophage‐inflammatory‐protein‐2 but not for IL‐4, IL‐5 and interferon‐γ","year":2001,"lang":"en","type":"article","venue":"Equine Veterinary Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe","funders":"Université de Montréal","keywords":"Tumor necrosis factor alpha; Medicine; Immunology","score_opus":0.03252890365356218,"score_gpt":0.27535344435501496,"score_spread":0.2428245407014528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138541168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870774,0.0017663263,0.005818483,0.0013582809,0.0019599905,0.0013111833,0.00051217503,0.00013075313,0.00006538227],"genre_scores_gemma":[0.9921562,0.00065295596,0.0010155145,0.000220453,0.0007373665,0.00029076054,0.00017850236,0.00013217263,0.0046160454],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99588734,0.00045542954,0.0015225244,0.00068550993,0.00014671977,0.0013024509],"domain_scores_gemma":[0.9977354,0.00033514143,0.0008310965,0.00054399786,0.00037834578,0.00017601153],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00097456295,0.00074459944,0.0009236991,0.0005304154,0.0008770932,0.0002879297,0.00075019145,0.0005405471,0.0007521933],"category_scores_gemma":[0.0002693069,0.00067133456,0.0005145069,0.00015757984,0.0003297972,0.00096478785,0.00045865364,0.0009417943,0.00013105909],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.015167926,0.00014129447,0.00006454451,0.00017128937,0.0003676834,0.00023017624,0.0007392316,0.000011215631,0.96103644,0.00008487988,0.0019231467,0.020062152],"study_design_scores_gemma":[0.008943375,0.02345192,0.0010612713,0.0005453487,0.00015061612,0.00980693,0.00047370992,0.00018599018,0.7208624,0.00033081646,0.23319784,0.0009897861],"about_ca_topic_score_codex":0.000026562322,"about_ca_topic_score_gemma":0.0000042550796,"teacher_disagreement_score":0.24017406,"about_ca_system_score_codex":0.00023149364,"about_ca_system_score_gemma":0.00013941011,"threshold_uncertainty_score":0.99957377},"labels":[],"label_agreement":null},{"id":"W2138836263","doi":"10.1080/0962935031000096962","title":"Upregulation of expression of the chemokine receptor CCR5 by hydrogen peroxide in human monocytes","year":2003,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Chemokine; Hydrogen peroxide; Downregulation and upregulation; Oxidative stress; Chemistry; Chemokine receptor; Receptor; Monocyte; Cell biology; Molecular biology; Chemotaxis; Flow cytometry; C-C chemokine receptor type 6; Gene expression; Biology; Immunology; Biochemistry; Gene","score_opus":0.004773714689792741,"score_gpt":0.2092194375100476,"score_spread":0.20444572282025486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2138836263","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860346,0.0006048394,0.00004083917,0.000054398857,0.00014220699,0.0002832592,0.0000061915175,0.00000993265,0.00025487258],"genre_scores_gemma":[0.99961287,0.000042267402,0.000054697655,0.000002676062,0.000010016844,0.000017060676,0.000104165214,0.000009143563,0.00014709357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861383,0.00033981513,0.00072056893,0.0001153955,0.000085176755,0.00012522053],"domain_scores_gemma":[0.9988548,0.00010984194,0.0006598327,0.0002646627,0.00010321337,0.000007650183],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055256544,0.000109781795,0.0002485125,0.00014430945,0.000047110407,0.0000017737698,0.00015206524,0.00020689586,0.00017025301],"category_scores_gemma":[0.00042187565,0.00008526018,0.00007904216,0.00020313959,0.00013090254,0.00017340209,0.000029548359,0.00010516552,0.000006486781],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000086820284,0.00003551381,0.007759988,0.000053036183,0.000016059557,2.5663107e-8,0.0010308819,0.000106063075,0.98937625,0.000527862,0.00020931003,0.00079821236],"study_design_scores_gemma":[0.0009433904,0.000049274993,0.010733678,0.00011671532,0.000012791349,7.4337254e-7,0.00020710174,0.00001003631,0.98673266,0.00018780206,0.0009334575,0.0000723519],"about_ca_topic_score_codex":0.00004312091,"about_ca_topic_score_gemma":0.0000065886056,"teacher_disagreement_score":0.0029736906,"about_ca_system_score_codex":0.000051660518,"about_ca_system_score_gemma":0.000053294156,"threshold_uncertainty_score":0.34768093},"labels":[],"label_agreement":null},{"id":"W2139101608","doi":"10.1007/978-3-642-59672-8_12","title":"Use of CpG DNA for Enhancing Specific Immune Responses","year":2000,"lang":"en","type":"review","venue":"Current topics in microbiology and immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agricultural Research Institute of Ontario","funders":"","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Antigen; Immune system; CpG site; Immunology; Biology; Medicine; Gene; Genetics; DNA methylation; Gene expression","score_opus":0.0694471210997794,"score_gpt":0.3222497947614644,"score_spread":0.252802673661685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139101608","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0072061424,0.98817754,0.00008121903,0.000038364167,0.0029048175,0.0012624757,0.0002609278,0.000038060272,0.000030459789],"genre_scores_gemma":[0.00016742927,0.99569327,0.00008629993,0.000011749408,0.0000829327,0.00028973224,0.0019117589,0.000047680634,0.0017091376],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99516237,0.0014156605,0.0019354086,0.00073340314,0.000016226475,0.00073691393],"domain_scores_gemma":[0.9968344,0.0016020733,0.0007616073,0.000691466,0.00009496789,0.000015491336],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00064095913,0.00064921175,0.0026715046,0.00091250613,0.00018245245,0.000019031635,0.00048214578,0.0017448924,0.00036019014],"category_scores_gemma":[0.00029395087,0.0005765749,0.00052099925,0.00026680116,0.0009033033,0.00014418589,0.00023063151,0.0011165644,0.00012385812],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007700532,0.00016862836,0.000011993699,0.002453837,0.0004366428,0.0000033158356,0.00018087217,1.7216512e-7,0.044788737,0.0020903884,0.00063854584,0.9484568],"study_design_scores_gemma":[0.0009453149,0.00031589926,0.00004869778,0.0037900931,0.00022746285,0.00031771202,0.000023796621,1.2811233e-7,0.010540587,0.00011559974,0.9831893,0.0004854018],"about_ca_topic_score_codex":0.000013453584,"about_ca_topic_score_gemma":0.000017022749,"teacher_disagreement_score":0.98255074,"about_ca_system_score_codex":0.000106870204,"about_ca_system_score_gemma":0.0002833263,"threshold_uncertainty_score":0.9996686},"labels":[],"label_agreement":null},{"id":"W2139150306","doi":"10.4049/jimmunol.0901481","title":"Neonatal Innate TLR-Mediated Responses Are Distinct from Those of Adults","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":462,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Infectious Diseases Centre; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Innate immune system; Immunology; Biology; Medicine; Immune system","score_opus":0.009298852574924837,"score_gpt":0.23429512979279504,"score_spread":0.22499627721787022,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139150306","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9711604,0.026035583,0.00013432727,0.0017393553,0.0006754183,0.00010639147,0.00003282541,0.00001775932,0.000097917924],"genre_scores_gemma":[0.9979399,0.0015111682,0.00004301348,0.00013721838,0.00004904915,9.080981e-7,0.000038749262,0.000009991532,0.00026998782],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974645,0.0012479778,0.000848593,0.00010005784,0.00006418967,0.00027470372],"domain_scores_gemma":[0.99691784,0.001150538,0.0012446168,0.00035888932,0.0003145312,0.000013560949],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087886874,0.00017770137,0.00048784103,0.00023217985,0.0001328955,0.0000061288288,0.0005761548,0.00027220187,0.00028623265],"category_scores_gemma":[0.001070989,0.00011316908,0.0001512377,0.00017913202,0.00036043228,0.00016642366,0.00007009368,0.0006221698,0.000147105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02465032,0.00011423202,0.00058583426,0.0000041086923,0.0004309384,0.00003205804,0.0025703614,0.0000037520492,0.94421285,0.000095644275,0.00075019855,0.02654971],"study_design_scores_gemma":[0.0043113544,0.0020538047,0.380169,0.00028860243,0.00015060123,0.0008624026,0.0023086362,0.0000047169992,0.5967354,0.0007935098,0.012128687,0.00019328666],"about_ca_topic_score_codex":0.00008839468,"about_ca_topic_score_gemma":0.000012889112,"teacher_disagreement_score":0.37958318,"about_ca_system_score_codex":0.00003752998,"about_ca_system_score_gemma":0.00012532528,"threshold_uncertainty_score":0.46149012},"labels":[],"label_agreement":null},{"id":"W2139265563","doi":"10.4049/jimmunol.179.9.6237","title":"The Role of IκB Kinase 2, but Not Activation of NF-κB, in the Release of CXCR3 Ligands from IFN-γ-Stimulated Human Bronchial Epithelial Cells","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"CXCR3; CXCL10; Cytotoxic T cell; CD8; Chemokine; IκB kinase; Chemistry; CXCL9; Molecular biology; Stimulation; T cell; Pharmacology; Signal transduction; NF-κB; Biology; Immunology; Biochemistry; Endocrinology; In vitro; Immune system; Receptor; Chemokine receptor","score_opus":0.006868943597649022,"score_gpt":0.23010965427830013,"score_spread":0.2232407106806511,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2139265563","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959084,0.002843249,0.000102353835,0.00038286214,0.0003853966,0.0001965928,0.00001488518,0.000004304917,0.00016199434],"genre_scores_gemma":[0.9992986,0.00046707236,0.000013210645,0.000047237594,0.000062655985,0.000001295062,0.000014952837,0.000011842725,0.00008318472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972395,0.00096887664,0.0013137828,0.00008837538,0.00010759004,0.00028187543],"domain_scores_gemma":[0.9956778,0.0019769324,0.0016285464,0.0004363694,0.00027138618,0.000008926075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027763604,0.0001613273,0.00045216788,0.00022183901,0.00019536736,0.000005364105,0.00074625976,0.0003040376,0.0000662802],"category_scores_gemma":[0.0002942818,0.00008661038,0.00017624613,0.00021297869,0.00063337013,0.000116531446,0.00008234107,0.0007112972,0.000011673893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009967614,0.00019614722,0.00012417356,0.000005283756,0.00032802715,0.0000029247944,0.0032094673,0.000104849954,0.9764036,0.0004840048,0.000059138496,0.009114788],"study_design_scores_gemma":[0.0024180012,0.0009597483,0.020756148,0.000061968625,0.00010577097,0.000050569408,0.002699478,0.00000934015,0.9703723,0.00088583987,0.0016038612,0.00007695083],"about_ca_topic_score_codex":0.0010065499,"about_ca_topic_score_gemma":0.000053275246,"teacher_disagreement_score":0.020631975,"about_ca_system_score_codex":0.000042337517,"about_ca_system_score_gemma":0.00012406576,"threshold_uncertainty_score":0.35318688},"labels":[],"label_agreement":null},{"id":"W2140019582","doi":"10.1371/journal.pone.0006818","title":"Serum Lipopolysaccharide Binding Protein Levels Predict Severity of Lung Injury and Mortality in Patients with Severe Sepsis","year":2009,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":61,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Instituto de Salud Carlos III; Fundación Canaria de Investigación y Salud","keywords":"Medicine; ARDS; Lipopolysaccharide binding protein; Sepsis; Internal medicine; Gastroenterology; Biomarker; Odds ratio; Prospective cohort study; Intensive care unit; Severity of illness; C-reactive protein; Systemic inflammatory response syndrome; Respiratory distress; White blood cell; Acute-phase protein; Lung; Surgery; Inflammation","score_opus":0.015841537995173623,"score_gpt":0.22224709258607425,"score_spread":0.20640555459090063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140019582","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9990434,0.00008256955,0.0000032240039,0.000072072944,0.00001672801,0.0005892489,0.000073310985,0.00003016404,0.000089301175],"genre_scores_gemma":[0.9995331,0.00000865678,0.00008614362,0.00002371659,0.000005598564,0.000014361625,0.000044767585,0.00000734131,0.00027628962],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99909794,0.00014688383,0.00028894073,0.00018457863,0.000070864895,0.00021076284],"domain_scores_gemma":[0.9995496,0.000023513443,0.00014688833,0.00019637494,0.00006972971,0.000013882614],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022151606,0.00012609149,0.000288297,0.00012703353,0.00006462925,0.0000073074425,0.0000842773,0.00015639832,0.00008892224],"category_scores_gemma":[0.00006654037,0.00011101372,0.000021918258,0.000118581615,0.00006261173,0.00023798563,0.000037312428,0.0002002,0.000009832289],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056710927,0.0005453489,0.5547027,0.00007128612,0.00018784727,6.797053e-7,0.00021263745,2.8274766e-7,0.44273713,0.000028239947,0.000008496786,0.0009382193],"study_design_scores_gemma":[0.0008034901,0.00026671693,0.5930027,0.00023210644,0.000044368815,4.6726467e-7,0.000016557218,0.00000591207,0.4055119,0.00002671377,0.000002160341,0.00008694959],"about_ca_topic_score_codex":0.000048870672,"about_ca_topic_score_gemma":0.00001101199,"teacher_disagreement_score":0.038299974,"about_ca_system_score_codex":0.00003924964,"about_ca_system_score_gemma":0.000041572508,"threshold_uncertainty_score":0.4527008},"labels":[],"label_agreement":null},{"id":"W2140229797","doi":"10.1111/j.1365-2567.2007.02619.x","title":"Differential regulation of lipopolysaccharide and Gram‐positive bacteria induced cytokine and chemokine production in macrophages by Gα<sub>i</sub> proteins","year":2007,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; National Institutes of Health","keywords":"Chemokine; Cytokine; Lipopolysaccharide; Macrophage inflammatory protein; Biology; Tumor necrosis factor alpha; Microbiology; Macrophage; Immunology; Chemistry; Interleukin; Inflammation; Biochemistry; In vitro","score_opus":0.004908305534933586,"score_gpt":0.20943063654950772,"score_spread":0.20452233101457412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140229797","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99719924,0.001412162,0.0001521009,0.00022920316,0.0004308915,0.0005105815,0.000010501942,0.000033775403,0.000021521055],"genre_scores_gemma":[0.99928916,0.00034702275,0.000032492084,0.00001252896,0.000036919595,0.000025156722,0.00016793584,0.000016743972,0.00007206753],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986026,0.00025620306,0.00048327868,0.00031620325,0.00003360661,0.00030810316],"domain_scores_gemma":[0.9993543,0.00009861076,0.00025733098,0.00019880816,0.000078972815,0.0000119677225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037272891,0.00019364504,0.00034269947,0.00029439267,0.00010537568,0.000011251733,0.00007751519,0.0004237331,0.000038688504],"category_scores_gemma":[0.00015345373,0.00018821843,0.00003121757,0.00013966762,0.00038052732,0.00019011046,0.00008973564,0.00030253414,0.000008936855],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017216868,0.000110171284,0.00074400863,0.000021980683,0.00010637822,0.0000020222924,0.00055615033,1.4577967e-7,0.9460395,0.00019121148,0.000020369866,0.050486393],"study_design_scores_gemma":[0.0011935068,0.00026293733,0.2911985,0.000037584305,0.000020800519,0.00008667553,0.000088316236,0.0000012078078,0.7068187,0.000111463414,0.00006364694,0.000116669544],"about_ca_topic_score_codex":0.00018815717,"about_ca_topic_score_gemma":0.000033650624,"teacher_disagreement_score":0.29045448,"about_ca_system_score_codex":0.000052886997,"about_ca_system_score_gemma":0.000024845216,"threshold_uncertainty_score":0.76753247},"labels":[],"label_agreement":null},{"id":"W2140472119","doi":"10.1189/jlb.0311124","title":"SHIP-deficient, alternatively activated macrophages protect mice during DSS-induced colitis","year":2011,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Crohn's and Colitis Foundation of Canada","keywords":"Inflammation; Colitis; Adoptive cell transfer; Immune system; In vivo; Immunology; Biology; Infiltration (HVAC); T cell","score_opus":0.036346203546658545,"score_gpt":0.26176988804184387,"score_spread":0.22542368449518532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140472119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99623704,0.0012015775,0.00011087763,0.000103312355,0.0010376251,0.00022077601,0.0000059195927,0.000032378826,0.0010505076],"genre_scores_gemma":[0.9987819,0.00019486046,0.0001331109,0.000051993746,0.0001018882,0.000009575979,0.000008923474,0.000019412522,0.0006983106],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790835,0.0006891687,0.0007176207,0.00020476022,0.00004345205,0.00043662038],"domain_scores_gemma":[0.9984909,0.00012172197,0.0008865456,0.00018195336,0.00028320015,0.000035629895],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056130724,0.00021815988,0.0004603977,0.00034127577,0.0001851792,0.000012439473,0.0003957113,0.000348649,0.00058470125],"category_scores_gemma":[0.00024987676,0.00017206998,0.000185327,0.00014638937,0.00016492393,0.00022351136,0.00008795305,0.00058212836,0.00023893136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033573122,0.000098687604,0.0006495747,0.000017094742,0.00032111446,0.00007183709,0.0010033838,7.458437e-7,0.9913655,0.00027481178,0.000065890505,0.002774049],"study_design_scores_gemma":[0.002132764,0.0010151905,0.0536846,0.000060561015,0.000040052673,0.0012981623,0.00022650807,6.990741e-7,0.9376003,0.0001456566,0.0036218262,0.00017365832],"about_ca_topic_score_codex":0.00012759115,"about_ca_topic_score_gemma":0.0000050995573,"teacher_disagreement_score":0.053765174,"about_ca_system_score_codex":0.00014943998,"about_ca_system_score_gemma":0.00016469616,"threshold_uncertainty_score":0.701681},"labels":[],"label_agreement":null},{"id":"W2140541855","doi":"10.1038/sj.gene.6364398","title":"The role of the Toll receptor pathway in susceptibility to inflammatory bowel diseases","year":2007,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":147,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Heart Institute; University of Toronto; Mount Sinai Hospital; Hôpital Fleurimont; Centre Hospitalier Universitaire de Sherbrooke; McGill University Health Centre; McGill University; Jewish General Hospital; Montreal General Hospital","funders":"National Institute of Neurological Disorders and Stroke; Fonds De La Recherche Scientifique - FNRS; Pfizer; National Institute of Diabetes and Digestive and Kidney Diseases; Crohn's and Colitis Foundation of America","keywords":"Inflammatory bowel disease; Biology; Immunology; Allele; Ulcerative colitis; Odds ratio; TLR4; Genotyping; Toll-like receptor; Haplotype; NOD2; Disease; Genetics; Genotype; Gene; Internal medicine; Inflammation; Medicine; Immune system; Innate immune system","score_opus":0.005251646108765755,"score_gpt":0.21246318961391844,"score_spread":0.2072115435051527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140541855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869698,0.011974951,0.0000073987817,0.00016571506,0.0002867485,0.00026364508,0.000010956835,0.000011559386,0.00030918053],"genre_scores_gemma":[0.999189,0.0003045148,0.0000061553746,0.00004090325,0.00001468245,0.00000961437,0.000010454665,0.0000055388823,0.00041911085],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998933,0.00036885554,0.00032187082,0.000108692715,0.000033343582,0.00023424337],"domain_scores_gemma":[0.99912393,0.00026844957,0.00009192757,0.00044156227,0.000058024223,0.000016119504],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009643802,0.000098994045,0.00012729148,0.00004498396,0.0003655377,0.000011094518,0.0002510916,0.000101336664,0.000043375814],"category_scores_gemma":[0.00019653984,0.000058102698,0.00006400574,0.00011624141,0.00021687684,0.000060834398,0.00019943547,0.00017335088,0.0000279765],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005278234,0.00004727301,0.08427514,0.0000097606,0.000020767544,1.5174687e-7,0.0008672183,0.0000025355357,0.83498734,0.00063621055,0.00007480599,0.078550994],"study_design_scores_gemma":[0.00021035197,0.0000477524,0.48284087,0.000015228912,0.0000038012977,0.0000017516703,0.0016881279,0.0000010472953,0.44527262,0.00016682206,0.06969437,0.000057257697],"about_ca_topic_score_codex":0.00033286944,"about_ca_topic_score_gemma":0.00047664766,"teacher_disagreement_score":0.3985657,"about_ca_system_score_codex":0.000028024051,"about_ca_system_score_gemma":0.00006167753,"threshold_uncertainty_score":0.28114575},"labels":[],"label_agreement":null},{"id":"W2140734135","doi":"10.1378/chest.126.3.860","title":"Experimental Human Endotoxemia Is Associated With Depression of Load-Independent Contractility Indices","year":2004,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Health Sciences Centre","funders":"","keywords":"Medicine; Contractility; Depression (economics); Cardiology; Internal medicine","score_opus":0.012821240842392976,"score_gpt":0.259694390451673,"score_spread":0.24687314960928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140734135","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99700284,0.0016498107,0.00007787497,0.000058044578,0.00016310225,0.00010605715,0.0000027566575,0.000017322387,0.000922215],"genre_scores_gemma":[0.9996578,0.00001730921,0.000020482445,0.000037476217,0.000023916598,0.000004521847,0.00001710718,0.0000089568,0.00021244741],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99909884,0.00013016012,0.00033805773,0.00012421337,0.00009699949,0.00021175735],"domain_scores_gemma":[0.999226,0.000050797942,0.00044771098,0.0001274386,0.0001237188,0.000024363007],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004254748,0.00012250383,0.00022371543,0.00006761521,0.00027930626,0.000020989426,0.00014639331,0.00019835608,0.0005581317],"category_scores_gemma":[0.00007178303,0.00009126518,0.00007691781,0.00005544652,0.00012585966,0.00023008663,0.000029104825,0.00043667216,0.000033524106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046846565,0.00027218074,0.007957661,0.000005972506,0.00018792342,0.00002284719,0.0018728068,0.0000058526957,0.9887892,0.00002260715,0.00009122333,0.00030327594],"study_design_scores_gemma":[0.0035865167,0.00026341024,0.10780319,0.00012252895,0.0000306818,0.0003466041,0.00055878726,1.6117383e-7,0.8865512,0.000058269103,0.0005880372,0.00009058268],"about_ca_topic_score_codex":0.000050951214,"about_ca_topic_score_gemma":0.000009324823,"teacher_disagreement_score":0.102237955,"about_ca_system_score_codex":0.00023737419,"about_ca_system_score_gemma":0.00020423741,"threshold_uncertainty_score":0.6111151},"labels":[],"label_agreement":null},{"id":"W2140783807","doi":"10.1155/2009/193970","title":"Interleukin (IL)-4 Induces Leukocyte Infiltration In Vivo by an Indirect Mechanism","year":2009,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Canadian Institutes of Health Research; Armand-Frappier Foundation","keywords":"In vivo; Pouch; Cytokine; Infiltration (HVAC); Ex vivo; Immunology; Interleukin; Interleukin 8; Molecular biology; Biology; Chemistry; Anatomy; Materials science","score_opus":0.0070337433746725745,"score_gpt":0.2265333885101562,"score_spread":0.21949964513548362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2140783807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979028,0.00022483968,0.00029865056,0.00025245245,0.0003716189,0.00031352404,0.000008192757,0.00007365654,0.0005542806],"genre_scores_gemma":[0.999246,0.00009251635,0.000075271506,0.000049650043,0.000052134994,0.00002306405,0.00031709814,0.000010629275,0.0001336458],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983379,0.00033409143,0.00077329826,0.0002167993,0.0000914904,0.000246415],"domain_scores_gemma":[0.9991482,0.00008426158,0.00041877874,0.00023711423,0.000089620415,0.000022007032],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007645983,0.00018436054,0.00029600022,0.00045205347,0.0000672036,0.000020000345,0.00020279372,0.0003541704,0.00019870306],"category_scores_gemma":[0.00024142665,0.00018037464,0.000054785505,0.00026443816,0.000055710414,0.00084860896,0.000017340992,0.00023256429,0.00006765038],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022259387,0.000057794015,0.00030595827,0.000010622028,0.000018117604,0.0000011171326,0.0023295418,0.000015500085,0.97466886,0.0013930985,0.00034438152,0.02063239],"study_design_scores_gemma":[0.0010066363,0.00040011946,0.0036647273,0.000048337624,0.000013055176,0.0000078381845,0.0003472167,0.00006282888,0.99145955,0.0012983141,0.0015154713,0.00017588212],"about_ca_topic_score_codex":0.0000658648,"about_ca_topic_score_gemma":0.000058587044,"teacher_disagreement_score":0.020456508,"about_ca_system_score_codex":0.00009512976,"about_ca_system_score_gemma":0.000082483115,"threshold_uncertainty_score":0.73554647},"labels":[],"label_agreement":null},{"id":"W2141040025","doi":"10.1126/science.1158298","title":"Pyogenic Bacterial Infections in Humans with MyD88 Deficiency","year":2008,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1281,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"National Institute of Allergy and Infectious Diseases; U.S. Public Health Service; Howard Hughes Medical Institute","keywords":"Immunology; Immunity; Receptor; Innate immune system; Disease; Biology; Medicine; Microbiology; Immune system; Internal medicine","score_opus":0.010815025972491224,"score_gpt":0.2253049527303628,"score_spread":0.21448992675787157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141040025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99577016,0.00017048036,0.00009416096,0.00004909875,0.0003380027,0.00009026797,6.905145e-7,0.000032394255,0.0034547339],"genre_scores_gemma":[0.9991593,0.00003321037,0.0000314362,0.000020982801,0.000009400879,0.0000101537335,0.0000041973663,0.0000028720722,0.0007284541],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99935824,0.00004577034,0.0001243133,0.0001780038,0.000038672566,0.0002549899],"domain_scores_gemma":[0.9997142,0.000026255628,0.000037631467,0.00016698016,0.00004587009,0.000009049199],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027693954,0.00006181268,0.000075495554,0.00021138627,0.0004588307,0.000010944878,0.00017807604,0.000046236288,0.00023263709],"category_scores_gemma":[0.00006997785,0.00004841623,0.000016973305,0.0005710963,0.0007957182,0.00028824375,0.000035819223,0.00010471245,0.0003525951],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004908441,0.00005574779,0.012867582,0.000001179132,0.0000017305948,0.000003915344,0.0008682455,0.000016962755,0.9849859,0.0005739828,0.000041040854,0.0005346412],"study_design_scores_gemma":[0.0012047498,0.00049035274,0.5911629,0.000020444017,0.0000056685353,0.00043937704,0.00017475821,0.000005312827,0.3910729,0.00007725518,0.015135199,0.0002110747],"about_ca_topic_score_codex":0.00006166586,"about_ca_topic_score_gemma":0.00008071027,"teacher_disagreement_score":0.59391296,"about_ca_system_score_codex":0.0000457571,"about_ca_system_score_gemma":0.00030161688,"threshold_uncertainty_score":0.4532014},"labels":[],"label_agreement":null},{"id":"W2141345225","doi":"10.1016/j.jaci.2006.11.514","title":"Ethnicity Plays a Role in Differential Human Toll-like Receptor Responsiveness","year":2007,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"TLR2; Stimulation; CXCL10; TLR4; Chemokine; CCL2; Immunology; TLR9; Receptor; Innate immune system; Toll-like receptor; Ethnic group; Peripheral blood mononuclear cell; Medicine; Inflammation; Immune system; Biology; Endocrinology; Internal medicine; Gene; Gene expression; Genetics; In vitro","score_opus":0.020673792820768262,"score_gpt":0.3183269861744363,"score_spread":0.297653193353668,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141345225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924985,0.0047450135,0.00024853917,0.00037665907,0.0016976641,0.00008878408,0.0000013807845,0.000012263755,0.0003311893],"genre_scores_gemma":[0.99638695,0.0023576126,0.000050401577,0.00014469918,0.00012574466,0.0000015626166,0.000014249255,0.000013416981,0.0009053618],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99665457,0.0010412649,0.0016381723,0.00021111585,0.00005471342,0.00040017467],"domain_scores_gemma":[0.99786395,0.0010424568,0.00067166676,0.00021090286,0.00017267802,0.000038375274],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023398816,0.00018507277,0.0006621257,0.00033295288,0.00015430995,0.000012056213,0.0002949919,0.00080059544,0.00054702297],"category_scores_gemma":[0.00047321402,0.00015277263,0.0002300825,0.00012626682,0.00046141283,0.00016706316,0.00013230508,0.0012385906,0.00006304022],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017737161,0.00070317904,0.005375319,0.000005539913,0.0014927632,0.00009768441,0.0006089488,0.0000029162736,0.94869655,0.0018650301,0.0005135471,0.022901362],"study_design_scores_gemma":[0.0090037435,0.0035102365,0.83602285,0.00014355933,0.00007499133,0.00062064856,0.0013412421,0.0000028864138,0.06747296,0.0008055717,0.08066507,0.00033624424],"about_ca_topic_score_codex":0.000056913665,"about_ca_topic_score_gemma":0.00026790108,"teacher_disagreement_score":0.8812236,"about_ca_system_score_codex":0.000049115897,"about_ca_system_score_gemma":0.00010544761,"threshold_uncertainty_score":0.6229887},"labels":[],"label_agreement":null},{"id":"W2141506792","doi":"10.1079/ahr2005107","title":"Passive and active components of neonatal innate immune defenses","year":2005,"lang":"en","type":"review","venue":"Animal Health Research Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Beef Cattle Research Council","keywords":"Innate immune system; Immune system; Neuroscience; Biology; Immunology; Chemistry","score_opus":0.28525979274605534,"score_gpt":0.482303220523706,"score_spread":0.19704342777765066,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141506792","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002124541,0.9957832,0.0000023171478,0.00032694405,0.00014029496,0.003236067,0.0001015631,0.000020691261,0.00017644303],"genre_scores_gemma":[0.0001695244,0.9977669,0.00006888535,0.000041913638,0.00007164605,0.0003250757,0.00078493304,0.00004686154,0.0007242461],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.989038,0.00714753,0.0020888913,0.0005715746,0.00017041256,0.0009835855],"domain_scores_gemma":[0.99657935,0.0011619497,0.0012916952,0.00058646465,0.000291385,0.00008913727],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004280511,0.00047268905,0.0034309616,0.0006796275,0.00045080786,0.000021877355,0.0005056428,0.00056119944,0.00028342495],"category_scores_gemma":[0.00081775367,0.0003491686,0.00047441685,0.0005897896,0.00059942296,0.00019124281,0.00044624176,0.001865235,0.0013111734],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002484672,0.00006424222,3.7319893e-7,0.01772973,0.00015879572,0.0000045949714,0.00029345596,3.0553986e-9,0.00024813396,0.00037486156,0.0025031767,0.9783742],"study_design_scores_gemma":[0.00037186575,0.000815773,0.000107694985,0.01868265,0.00007402053,0.0001423044,0.00006477743,2.1244303e-7,0.00014079276,0.000010540744,0.979363,0.00022636796],"about_ca_topic_score_codex":0.00031192484,"about_ca_topic_score_gemma":0.00002330948,"teacher_disagreement_score":0.9781478,"about_ca_system_score_codex":0.00023745692,"about_ca_system_score_gemma":0.0008459871,"threshold_uncertainty_score":0.99989605},"labels":[],"label_agreement":null},{"id":"W2141753982","doi":"10.1084/jem.20041964","title":"A type I interferon autocrine–paracrine loop is involved in Toll-like receptor-induced interleukin-12p70 secretion by dendritic cells","year":2005,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":535,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Biology; Toll-like receptor; Autocrine signalling; TLR7; Cell biology; Interferon; Secretion; STAT1; Paracrine signalling; TLR3; Receptor; Signal transduction; Immunology; Innate immune system; Biochemistry","score_opus":0.017658178047169532,"score_gpt":0.2825892131731555,"score_spread":0.264931035125986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141753982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9813679,0.013723972,0.000027870046,0.0029262963,0.0015253728,0.0001911456,0.0000013979067,0.000012831488,0.0002232406],"genre_scores_gemma":[0.9969182,0.0005090243,0.00002554511,0.0009120329,0.0001696999,0.000004233342,0.000025531943,0.000017126386,0.0014185788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983726,0.00038051576,0.0007684709,0.000116938994,0.00010545266,0.0002559886],"domain_scores_gemma":[0.9992046,0.00013561701,0.0003327231,0.00019993073,0.000093984105,0.000033168937],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00070144306,0.00019137192,0.0003734647,0.00020282967,0.00007136445,0.000007996857,0.00032708165,0.00011841285,0.0021397637],"category_scores_gemma":[0.00005709699,0.000124361,0.00006169816,0.00015663324,0.00015790413,0.0002226652,0.00007048402,0.0004882058,0.00022506803],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026780297,0.00015382105,0.000025356623,0.0000062161917,0.00008429746,0.000005410953,0.0054249517,0.00000193654,0.96122336,0.000013507849,0.028553067,0.0018300534],"study_design_scores_gemma":[0.0031758014,0.0027831274,0.00009059555,0.00032309364,0.00004590378,0.0002031096,0.0057521644,0.000032859618,0.9681483,0.0000074561626,0.019318959,0.00011862172],"about_ca_topic_score_codex":0.000088593915,"about_ca_topic_score_gemma":0.000011551198,"teacher_disagreement_score":0.0155503545,"about_ca_system_score_codex":0.0002203685,"about_ca_system_score_gemma":0.000046646328,"threshold_uncertainty_score":0.99877244},"labels":[],"label_agreement":null},{"id":"W2141774394","doi":"10.1159/000347132","title":"Damage-Associated Molecular Patterns Control Neutrophil Recruitment","year":2013,"lang":"en","type":"review","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":242,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fondation pour la Recherche Médicale; Canadian Institutes of Health Research; Alberta Innovates; Alberta Innovates - Health Solutions","keywords":"Innate immune system; Neutrophil extracellular traps; Inflammation; Cell biology; Damp; Biology; Inflammatory response; Immune system; Extracellular; Immunology","score_opus":0.05686916729478553,"score_gpt":0.3209535159684124,"score_spread":0.26408434867362685,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141774394","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013766815,0.98274535,0.000059632006,0.00011291865,0.002049992,0.0010215365,0.000049669583,0.000026129672,0.00016796331],"genre_scores_gemma":[0.0055960566,0.99297994,0.000010590984,0.00009202123,0.000054828495,0.000064321284,0.0002492948,0.00006102906,0.0008919023],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99335754,0.0038627274,0.0020178962,0.00017651702,0.00011742477,0.00046791098],"domain_scores_gemma":[0.99502707,0.00043227128,0.0033622487,0.00058490015,0.00054827274,0.000045245568],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0016963256,0.00054197886,0.002415312,0.00056486396,0.0002051243,0.0000673218,0.0008940897,0.0009279588,0.0006235484],"category_scores_gemma":[0.00044793653,0.00039656172,0.0011424066,0.00025391055,0.00011092844,0.00026883357,0.00014920114,0.0024430512,0.0005037489],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023716688,0.00062274403,0.000013629821,0.0021785675,0.007260094,0.00022159627,0.00028471008,0.000005980087,0.016651284,0.00008743158,0.0036645872,0.96877223],"study_design_scores_gemma":[0.0021865163,0.0006566445,0.00014104912,0.008246336,0.001755103,0.0005669314,0.00006316909,6.572592e-7,0.0021011163,0.000031954823,0.9838001,0.00045039805],"about_ca_topic_score_codex":0.00008148775,"about_ca_topic_score_gemma":0.0000021835838,"teacher_disagreement_score":0.98013556,"about_ca_system_score_codex":0.00038144196,"about_ca_system_score_gemma":0.00045074278,"threshold_uncertainty_score":0.9998584},"labels":[],"label_agreement":null},{"id":"W2141801137","doi":"10.1128/iai.00286-06","title":"Toll-Like Receptors Differentially Regulate CC and CXC Chemokines in Skeletal Muscle via NF-κB and Calcineurin","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada); McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé","keywords":"Biology; Chemokine; TLR4; TLR2; Calcineurin; Pyrrolidine dithiocarbamate; Innate immune system; Cell biology; CXCL10; TLR5; Toll-like receptor; Receptor; Signal transduction; Immunology; Inflammation; Internal medicine; NF-κB; Biochemistry; Transplantation; Medicine","score_opus":0.005056735366836845,"score_gpt":0.2069740216201827,"score_spread":0.20191728625334585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141801137","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974708,0.0011375449,0.00005836956,0.00013513169,0.0005660334,0.00015889441,0.0000016425987,0.000054700442,0.00041688018],"genre_scores_gemma":[0.99757946,0.00064089,0.000006686817,0.00003583988,0.000026805174,0.000010772824,0.000071586735,0.000010596137,0.001617355],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990432,0.0002758786,0.00027599043,0.00018292834,0.000023891029,0.00019805711],"domain_scores_gemma":[0.9996505,0.00006951109,0.000085281055,0.0001464904,0.00003267787,0.00001553206],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024447372,0.00016347706,0.00021433647,0.00017929528,0.0002535295,0.000033688906,0.000037024085,0.00021425656,0.00009808754],"category_scores_gemma":[0.000033377484,0.00015074383,0.000033957425,0.00011557837,0.00018826209,0.00020375302,0.00008378079,0.00027807907,0.000013416999],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019653272,0.00040028745,0.031288,0.00006409307,0.000052053932,0.0000028393242,0.0004863426,0.0000029308098,0.8646345,0.00022287565,0.00043984095,0.10220967],"study_design_scores_gemma":[0.0031250734,0.0001623446,0.8693655,0.000035163117,0.00002312567,0.00012462394,0.000048006557,0.00003675696,0.09367605,0.00023889358,0.032953817,0.00021060999],"about_ca_topic_score_codex":0.0036218227,"about_ca_topic_score_gemma":0.00069620006,"teacher_disagreement_score":0.83807755,"about_ca_system_score_codex":0.00002227781,"about_ca_system_score_gemma":0.0000123452655,"threshold_uncertainty_score":0.61471546},"labels":[],"label_agreement":null},{"id":"W2141831260","doi":"10.1111/j.1365-2249.2004.02513.x","title":"Disruption of MAP kinase activation and nuclear factor binding to the IL-12 p40 promoter in HIV-infected myeloid cells","year":2004,"lang":"en","type":"article","venue":"Clinical & Experimental Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network","keywords":"Transcription factor; Biology; p38 mitogen-activated protein kinases; Phosphorylation; Kinase; Molecular biology; Binding site; Promoter; Cytokine; Myeloid; MAPK/ERK pathway; Cell biology; Immunology; Gene expression; Gene; Genetics","score_opus":0.02395046777933318,"score_gpt":0.310882461741403,"score_spread":0.2869319939620698,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2141831260","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99706596,0.0004102036,0.0000747491,0.0010338222,0.0007536581,0.0005436204,0.000013908156,0.00003983472,0.000064242384],"genre_scores_gemma":[0.9993551,0.00007165313,0.00009679297,0.00016626743,0.000031077496,0.000032624102,0.00006495704,0.00002021109,0.00016135025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99818224,0.00045038864,0.0007077502,0.0003203254,0.00003679238,0.00030250612],"domain_scores_gemma":[0.9992249,0.00020170934,0.0002162626,0.00030238982,0.00003413944,0.000020578],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031568785,0.00018474858,0.00035253185,0.00015986581,0.00013739064,0.000015154156,0.0001937327,0.00038629948,0.00024085563],"category_scores_gemma":[0.00014020712,0.00014392413,0.00009861982,0.00012921962,0.00037202737,0.00018415632,0.00020018255,0.00040375048,0.0006062349],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011699011,0.00036887598,0.0007843976,0.000006990985,0.00007427799,0.0000023843031,0.002836218,0.000003909787,0.99117213,0.00047386868,0.00006181883,0.0030452309],"study_design_scores_gemma":[0.0025988806,0.0010512513,0.05148947,0.000073651405,0.000010343191,0.000012610133,0.0013187171,0.000002371256,0.9368528,0.000030300613,0.0064013884,0.00015820666],"about_ca_topic_score_codex":0.000079997124,"about_ca_topic_score_gemma":0.000006909071,"teacher_disagreement_score":0.054319315,"about_ca_system_score_codex":0.000108942055,"about_ca_system_score_gemma":0.000038930943,"threshold_uncertainty_score":0.77921253},"labels":[],"label_agreement":null},{"id":"W2142604167","doi":"10.1177/1753425909104782","title":"Endotoxin-induced translocation of interleukin-6 from lungs to the systemic circulation","year":2009,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Michael Smith Health Research BC; British Columbia Lung Association; AstraZeneca","keywords":"Medicine; Dexamethasone; Interquartile range; Venous blood; Systemic inflammation; Lung; Cytokine; Internal medicine; Inflammation; Immunology; Endocrinology","score_opus":0.014591971105480293,"score_gpt":0.24449688700329963,"score_spread":0.22990491589781933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142604167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995587,0.0011235614,0.0010010754,0.0010274205,0.00040515387,0.00043777013,0.000010627261,0.000052154108,0.00035523777],"genre_scores_gemma":[0.9994675,0.00004260579,0.000015341022,0.00019948294,0.000022623291,0.000017822895,0.00014374038,0.0000075497087,0.00008336728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862844,0.0005624059,0.00045349557,0.00013479101,0.000047680496,0.00017321619],"domain_scores_gemma":[0.9990514,0.0001439267,0.00017918217,0.0004898462,0.00012492736,0.000010698443],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053263275,0.00012944656,0.00021214914,0.0001269105,0.00017028031,0.000015085687,0.0003379499,0.00016654299,0.000090788555],"category_scores_gemma":[0.00012543079,0.00009993991,0.00008152264,0.00022812127,0.00003664613,0.00014719926,0.000025976698,0.0002765981,0.00026658914],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026251713,0.000044769007,0.00008708504,0.000005095961,0.000058688027,3.587542e-7,0.0047789165,0.00003656125,0.9557168,0.00031023822,0.00009157307,0.038607422],"study_design_scores_gemma":[0.0006000195,0.00014540397,0.046670232,0.00012494119,0.000027073842,0.000019021689,0.00056732586,0.000031564916,0.9502627,0.00021046953,0.0012299145,0.000111317386],"about_ca_topic_score_codex":0.0007106917,"about_ca_topic_score_gemma":0.00003508499,"teacher_disagreement_score":0.046583146,"about_ca_system_score_codex":0.000065252156,"about_ca_system_score_gemma":0.000051696392,"threshold_uncertainty_score":0.40754312},"labels":[],"label_agreement":null},{"id":"W2142769339","doi":"10.4049/jimmunol.1200776","title":"Sialoadhesin Promotes Rapid Proinflammatory and Type I IFN Responses to a Sialylated Pathogen, <i>Campylobacter jejuni</i>","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Wellcome Trust; University of Dundee","keywords":"Campylobacter jejuni; Proinflammatory cytokine; Microbiology; Pathogen; Biology; Immunology; Virology; Bacteria; Inflammation","score_opus":0.01237162200034887,"score_gpt":0.23217964484659373,"score_spread":0.21980802284624487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142769339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9731735,0.02352092,0.00003544099,0.0016853028,0.0011081565,0.00030546248,0.0000035638839,0.000027525053,0.00014014269],"genre_scores_gemma":[0.99776304,0.00093960954,0.000107425905,0.0002879432,0.00012626227,0.000004795672,0.000007176795,0.000023649067,0.0007401098],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997006,0.001660742,0.0006724627,0.00010454256,0.000058522768,0.00049771066],"domain_scores_gemma":[0.99832517,0.0005441655,0.0004759621,0.00033521774,0.00027741396,0.00004208478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002353843,0.0002167164,0.00041049553,0.00028938462,0.00023618575,0.000017526783,0.00034292322,0.00028212022,0.00025186146],"category_scores_gemma":[0.0007629716,0.00014000939,0.00008628115,0.0002349296,0.00028204714,0.00030895724,0.0001452374,0.00051971775,0.00041855627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006964572,0.000103903316,0.0014989359,0.000008785998,0.00035944488,0.0000070087062,0.0033613525,6.247525e-7,0.9785518,0.00015214394,0.0014114586,0.007579957],"study_design_scores_gemma":[0.0019408691,0.0025734482,0.11868425,0.00010430266,0.00023538742,0.0050818315,0.00089800375,6.013491e-7,0.70805645,0.00012280048,0.16199015,0.000311932],"about_ca_topic_score_codex":0.000013037229,"about_ca_topic_score_gemma":0.0000023817825,"teacher_disagreement_score":0.27049538,"about_ca_system_score_codex":0.000049617644,"about_ca_system_score_gemma":0.0001587905,"threshold_uncertainty_score":0.57094175},"labels":[],"label_agreement":null},{"id":"W2142865224","doi":"10.1165/rcmb.2010-0450oc","title":"Steroid-Insensitive ERK1/2 Activity Drives CXCL8 Synthesis and Neutrophilia by Airway Smooth Muscle","year":2011,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Christie (Canada)","funders":"","keywords":"Neutrophilia; Interleukin 8; Airway; Medicine; Internal medicine; Cardiology; Chemistry; Inflammation; Anesthesia","score_opus":0.0071639300547167,"score_gpt":0.213496968354143,"score_spread":0.2063330382994263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2142865224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99294424,0.00535555,0.0009674664,0.000106602754,0.00013261246,0.00008662306,0.000010224384,0.000010909072,0.0003857497],"genre_scores_gemma":[0.9987418,0.00056633394,0.00014315428,0.00047466176,0.000016937951,0.0000040307714,0.0000021532596,0.000015813332,0.000035138124],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981566,0.0009790038,0.0003304426,0.00023278102,0.000030025592,0.00027112453],"domain_scores_gemma":[0.99897206,0.00017861425,0.0005234137,0.00016813524,0.00009956615,0.000058209338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00037021184,0.00020510459,0.0004785693,0.00017505158,0.00011382067,0.0000091112115,0.00012694877,0.00014927633,0.000044783763],"category_scores_gemma":[0.00007719714,0.0001618701,0.000103691935,0.00009021055,0.00091107073,0.00009536035,0.000069719856,0.00028642663,0.000010482353],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060276146,0.0000619926,0.0006235083,0.000006227958,0.00010717228,0.000025419653,0.0003989515,1.4166123e-7,0.88454694,0.000041791056,0.00012127628,0.113463834],"study_design_scores_gemma":[0.0006933559,0.0026064552,0.011694883,0.000019150213,0.0000795885,0.00006793336,0.00046293912,5.9661073e-7,0.96125317,0.000046026038,0.022877827,0.00019809273],"about_ca_topic_score_codex":0.00007030189,"about_ca_topic_score_gemma":0.000002790735,"teacher_disagreement_score":0.11326574,"about_ca_system_score_codex":0.000017658149,"about_ca_system_score_gemma":0.00006430584,"threshold_uncertainty_score":0.66008717},"labels":[],"label_agreement":null},{"id":"W2143180162","doi":"10.1034/j.1399-3003.2000.15e18.x","title":"The response of human bone marrow to chronic cigarette smoking","year":2000,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":163,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Human bone; Bone marrow; Medicine; Cigarette smoking; Environmental health; Internal medicine; Biology","score_opus":0.01522945446208725,"score_gpt":0.24859708440497066,"score_spread":0.2333676299428834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143180162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98608977,0.006450764,0.000011594239,0.00049745524,0.000329989,0.00011553783,0.0000020797795,0.000030278767,0.0064725634],"genre_scores_gemma":[0.9909528,0.000080116275,0.000003839368,0.00052043766,0.00019041281,0.0000022124934,0.0000020374152,0.000032696258,0.008215479],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99549216,0.0032253445,0.00065991114,0.00015769417,0.00009537782,0.00036950252],"domain_scores_gemma":[0.99902123,0.00018489991,0.00024347301,0.00040748584,0.000100903344,0.00004198438],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.005143744,0.00015052469,0.00018546573,0.00015588367,0.0009964736,0.00006828928,0.00046829862,0.000067856614,0.0017746147],"category_scores_gemma":[0.00021077304,0.000109035085,0.00013456806,0.00015139207,0.0001727959,0.0001165903,0.00006791395,0.00055494625,0.0008491592],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018520581,0.000018283336,0.00018699461,0.000003139106,0.00009172727,0.000073595016,0.00042053094,0.000025248139,0.8936071,0.000063153624,0.013689477,0.08996873],"study_design_scores_gemma":[0.0009981873,0.00083665684,0.05053281,0.00009535799,0.000023315783,0.00025237259,0.00007619587,3.4532832e-7,0.1664478,0.0000103312095,0.7805854,0.0001411848],"about_ca_topic_score_codex":0.0000013002326,"about_ca_topic_score_gemma":0.0000019420183,"teacher_disagreement_score":0.76689595,"about_ca_system_score_codex":0.0000951229,"about_ca_system_score_gemma":0.00012359401,"threshold_uncertainty_score":0.9999288},"labels":[],"label_agreement":null},{"id":"W2143541969","doi":"10.1186/1746-6148-2-34","title":"Characterization of ovine hepatic gene expression profiles in response to Escherichia coli lipopolysaccharide using a bovine cDNA microarray","year":2006,"lang":"en","type":"article","venue":"BMC Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microarray; Complementary DNA; Escherichia coli; Gene expression; Gene; Microarray analysis techniques; Lipopolysaccharide; Gene expression profiling; Molecular biology; Real-time polymerase chain reaction; Housekeeping gene; Immunology; Genetics","score_opus":0.060015796894433995,"score_gpt":0.3317550541150793,"score_spread":0.2717392572206453,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143541969","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977101,0.00027624215,0.0007566529,0.00012538614,0.00015141752,0.00088872545,0.00002292852,0.000030335501,0.000038182567],"genre_scores_gemma":[0.9958768,0.00001849812,0.0019310822,0.000012775981,0.000051111554,0.00012237093,0.00017579774,0.000031535594,0.0017800382],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959704,0.00233406,0.0006325059,0.000370412,0.00014306835,0.00054950314],"domain_scores_gemma":[0.998841,0.00032458897,0.00014730655,0.00044833985,0.00020987562,0.000028910348],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0022689488,0.00018395258,0.00033195742,0.0008188729,0.00018815101,0.000026185286,0.000286333,0.00022809261,0.00022872486],"category_scores_gemma":[0.00038022563,0.00017747936,0.00006413734,0.0005655697,0.00015203288,0.00022099509,0.0002668896,0.00031055318,0.00013501078],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02016001,0.0002176491,0.0041564708,0.00010343565,0.000010220859,0.000022003736,0.00034277033,0.000020166182,0.97463816,0.000016575563,0.000046531764,0.0002659726],"study_design_scores_gemma":[0.00091287825,0.0012328599,0.078537285,0.00022391636,0.0000047960766,0.00004577708,0.00008201604,0.00014007112,0.91750604,0.000011679276,0.001141071,0.00016159462],"about_ca_topic_score_codex":0.00066018145,"about_ca_topic_score_gemma":0.000025570187,"teacher_disagreement_score":0.074380815,"about_ca_system_score_codex":0.00016053217,"about_ca_system_score_gemma":0.0003000063,"threshold_uncertainty_score":0.7237398},"labels":[],"label_agreement":null},{"id":"W2143760680","doi":"10.1093/infdis/jis505","title":"Differential Roles of MyD88 and TRIF in Hematopoietic and Resident Cells During Murine Gram-Negative Pneumonia","year":2012,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TRIF; Pneumonia; Signal transducing adaptor protein; Haematopoiesis; Immunology; Biology; Innate immune system; Pathogen; Immune system; Toll-like receptor; Myeloid; Signal transduction; Microbiology; Medicine; Cell biology; Stem cell; Internal medicine","score_opus":0.0038576721533525177,"score_gpt":0.20947160590263492,"score_spread":0.20561393374928238,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143760680","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916715,0.007975199,0.000013482101,0.000057404555,0.00015280074,0.0000944563,0.0000031961317,0.0000053376557,0.000026605043],"genre_scores_gemma":[0.9982102,0.001688536,0.000001221149,0.0000067178294,0.000034138986,0.000001784737,8.0747094e-7,0.0000060024563,0.000050576116],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991,0.0003355654,0.00033631208,0.000043488646,0.000037251826,0.00014735373],"domain_scores_gemma":[0.9992796,0.00027476533,0.0002952771,0.00007780637,0.00004808357,0.000024438941],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020282475,0.00009304988,0.00023121116,0.00014779624,0.00008776338,0.0000081459975,0.000057437817,0.000051912135,0.000052833195],"category_scores_gemma":[0.000106603875,0.000059974605,0.000050350634,0.000059649294,0.00014934049,0.0001582707,0.000049330112,0.00015404826,0.0000033394608],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011168505,0.00018425597,0.08773037,0.00007700091,0.00014205008,0.000003265982,0.0031338036,0.000011329573,0.9069574,0.00006935952,0.00002453483,0.00054979295],"study_design_scores_gemma":[0.0015368841,0.00017077176,0.5420571,0.000102074126,0.00012395628,0.00029462887,0.0008422257,9.0221397e-7,0.45457715,0.00021943128,0.000016427675,0.000058484642],"about_ca_topic_score_codex":0.000054386353,"about_ca_topic_score_gemma":0.000018508545,"teacher_disagreement_score":0.4543267,"about_ca_system_score_codex":0.000026699285,"about_ca_system_score_gemma":0.000021831134,"threshold_uncertainty_score":0.24456935},"labels":[],"label_agreement":null},{"id":"W2143922165","doi":"10.1183/09031936.00076510","title":"Host defence during<i>Klebsiella</i>pneumonia relies on haematopoietic-expressed Toll-like receptors 4 and 2","year":2010,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":76,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Universiteit van Amsterdam","keywords":"TLR2; Haematopoiesis; Klebsiella pneumoniae; Biology; Klebsiella pneumonia; TLR4; Microbiology; Spleen; Toll-like receptor; Immunology; Innate immune system; Bacterial pneumonia; Pneumonia; Immune system; Staphylococcus aureus; Bacteria; Antibiotics; Medicine; Escherichia coli; Gene; Stem cell; Cell biology; Internal medicine","score_opus":0.008714813739450385,"score_gpt":0.21272701618357653,"score_spread":0.20401220244412616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2143922165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98967624,0.0011599513,0.000011690197,0.00028339744,0.0025780557,0.000127174,0.0000027809333,0.00008349066,0.006077232],"genre_scores_gemma":[0.9954639,0.00026244312,0.000059615602,0.00057156326,0.00023589184,0.0000032095475,0.0000039252577,0.000052635623,0.0033467924],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99772817,0.0009109526,0.0005359911,0.00031668588,0.00009439167,0.00041381488],"domain_scores_gemma":[0.9989392,0.00013464196,0.0003110373,0.00042703058,0.000107386804,0.00008068749],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011089888,0.00026515612,0.00025876422,0.00022826926,0.0007880323,0.00013471006,0.00035845992,0.00015744356,0.0005998703],"category_scores_gemma":[0.00031110426,0.00022374846,0.000106056075,0.00009818615,0.00029777642,0.00023064092,0.00012730653,0.0013458678,0.0017190985],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000428772,0.00004785332,0.0017227824,0.000014135269,0.00004886431,0.00015471404,0.0005395504,0.0000032329056,0.9890453,0.00015103414,0.0058544497,0.001989292],"study_design_scores_gemma":[0.001585141,0.00041515712,0.07341823,0.00011544916,0.000026045465,0.0013325978,0.00020701598,4.8198035e-7,0.41539988,0.000024998473,0.5071359,0.0003390964],"about_ca_topic_score_codex":0.0000015141815,"about_ca_topic_score_gemma":0.000002773862,"teacher_disagreement_score":0.5736454,"about_ca_system_score_codex":0.00002168977,"about_ca_system_score_gemma":0.000065457054,"threshold_uncertainty_score":0.9990582},"labels":[],"label_agreement":null},{"id":"W2144308207","doi":"10.4049/jimmunol.180.11.7134","title":"TLR Ligand-Induced Type I IFNs Affect Thymopoiesis","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hôpital Saint-Luc; Sunnybrook Health Science Centre; Université de Montréal; Sunnybrook Hospital; McGill University; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"TLR3; TLR7; Biology; Immune system; Acquired immune system; Regulator; Vesicular stomatitis virus; Immunology; Thymocyte; Cell biology; TLR9; Immunity; Innate immune system; T cell; Virus; Toll-like receptor; Gene expression; Gene; Genetics","score_opus":0.020166087946043708,"score_gpt":0.24441680402980379,"score_spread":0.22425071608376007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144308207","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96882844,0.026957067,0.00005041808,0.0014894087,0.0018062629,0.00010222885,6.49484e-7,0.000023731984,0.00074178743],"genre_scores_gemma":[0.99173856,0.005889711,0.00001608274,0.00026982726,0.000080307604,0.0000012729544,0.00000351219,0.000015707405,0.001985001],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982018,0.00083158584,0.00051945413,0.000081357866,0.000050777697,0.00031501518],"domain_scores_gemma":[0.9983927,0.0005421794,0.00046774917,0.00033335693,0.00025176542,0.000012221205],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00082811614,0.00016171302,0.00038042216,0.00020087262,0.000369441,0.0000054786296,0.0004935283,0.00026725038,0.00039982147],"category_scores_gemma":[0.0003763736,0.00009965058,0.00015030173,0.00021869646,0.00029681833,0.00019669945,0.00008247827,0.000642597,0.0008424277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018795409,0.00005114989,0.00019020477,0.0000028014545,0.000504345,0.000024688183,0.0014655071,0.00000478921,0.98524296,0.00013219706,0.008612432,0.0018893634],"study_design_scores_gemma":[0.0015304832,0.0016297307,0.024417445,0.000032845528,0.00011422465,0.008490482,0.00042026254,8.5304424e-7,0.9154327,0.000088679204,0.047699776,0.00014254755],"about_ca_topic_score_codex":0.000034429162,"about_ca_topic_score_gemma":0.0000024336643,"teacher_disagreement_score":0.06981031,"about_ca_system_score_codex":0.00004854835,"about_ca_system_score_gemma":0.00020196041,"threshold_uncertainty_score":0.9999355},"labels":[],"label_agreement":null},{"id":"W2144318479","doi":"10.4049/jimmunol.169.10.5660","title":"Differential Regulation of CD44 Expression by Lipopolysaccharide (LPS) and TNF-α in Human Monocytic Cells: Distinct Involvement of c-Jun N-Terminal Kinase in LPS-Induced CD44 Expression","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Canada; University of British Columbia; Children's Hospital of Eastern Ontario; Vancouver Hospital and Health Sciences Centre; University of British Columbia Hospital; University of Ottawa","funders":"Ontario HIV Treatment Network; Natural Sciences and Engineering Research Council of Canada; Medical Research Council Canada; Cancer Research Society; Medical Research Council; University of Ottawa","keywords":"Lipopolysaccharide; Terminal (telecommunication); Cell biology; CD44; Tumor necrosis factor alpha; Kinase; Expression (computer science); THP1 cell line; Chemistry; Molecular biology; Biology; Immunology; Cell culture; Cell; Biochemistry; Computer science; Telecommunications; Genetics","score_opus":0.017087915870123215,"score_gpt":0.23691252850801195,"score_spread":0.21982461263788874,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144318479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951296,0.0040889224,0.0001155669,0.0000988263,0.0003136875,0.00021386646,0.000003982184,0.0000053307444,0.000030217467],"genre_scores_gemma":[0.99909204,0.00066498877,0.000021796777,0.000008944094,0.000021303784,0.000005533975,0.000013233104,0.000013708212,0.00015842236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99720883,0.001049636,0.0012262485,0.00014949744,0.00008906829,0.00027673988],"domain_scores_gemma":[0.9981753,0.00026865708,0.0011426546,0.00030349722,0.00009397887,0.000015887232],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006523407,0.00020279325,0.0005540374,0.00043431533,0.000105787454,0.000006786869,0.00033240108,0.00029670767,0.00033160963],"category_scores_gemma":[0.0000902202,0.0001451805,0.00008810822,0.0001217321,0.00026345236,0.00021385726,0.00015763,0.0005077288,0.0000053511626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017111095,0.00033408313,0.0005940408,0.000038000788,0.000056050085,0.0000072285693,0.0023942974,0.0000142775625,0.9902598,0.00003634154,0.00016426636,0.004390478],"study_design_scores_gemma":[0.0034222875,0.00085126236,0.0139028365,0.00046452603,0.000050362345,0.00009350811,0.00075917394,0.000040694966,0.9800506,0.00016637403,0.00007411178,0.00012424051],"about_ca_topic_score_codex":0.00019881137,"about_ca_topic_score_gemma":0.000023623432,"teacher_disagreement_score":0.013308795,"about_ca_system_score_codex":0.000088681285,"about_ca_system_score_gemma":0.00003096667,"threshold_uncertainty_score":0.5920289},"labels":[],"label_agreement":null},{"id":"W2144819671","doi":"10.1128/iai.02832-14","title":"Uncoupling of Pro- and Anti-Inflammatory Properties of Staphylococcus aureus","year":2015,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; Centre Hospitalier de l’Université de Montréal; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"Proinflammatory cytokine; TLR2; Staphylococcus aureus; Biology; Microbiology; Population; Phagocytosis; Protein kinase B; PI3K/AKT/mTOR pathway; Immunology; TLR4; Signal transduction; Inflammation; Cell biology; Bacteria; Medicine","score_opus":0.030095728209729677,"score_gpt":0.23936159628519846,"score_spread":0.2092658680754688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144819671","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953413,0.00384612,0.000051749594,0.000025727657,0.00020528304,0.00017104456,0.0000016736299,0.000028262803,0.0003288575],"genre_scores_gemma":[0.9994895,0.00034535516,0.0000092512255,0.000007485733,0.000007988468,0.0000066988428,0.0000069751727,0.00000566561,0.00012112294],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993378,0.0001759233,0.00027598412,0.000080953585,0.000027565073,0.0001018108],"domain_scores_gemma":[0.9994597,0.000030323316,0.00016381708,0.00014764964,0.00018425277,0.000014274582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005057862,0.000090645866,0.00019947781,0.0001246937,0.00009494995,0.000006987347,0.000039920913,0.00012648833,0.00001372132],"category_scores_gemma":[0.00016359841,0.00007467307,0.000029065293,0.00008022303,0.00026240136,0.00016610042,0.00006387836,0.00015433805,0.000006826044],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020765276,0.0000531519,0.030097943,0.000102858605,0.000063495296,1.6740047e-7,0.0015074443,0.000012729443,0.96491045,0.0001736177,0.000047485217,0.0028230331],"study_design_scores_gemma":[0.000919351,0.00021396548,0.08605091,0.00008580665,0.000023765862,0.000012808912,0.0006266352,0.000023736957,0.9089372,0.000056470974,0.00295854,0.00009077841],"about_ca_topic_score_codex":0.00058845,"about_ca_topic_score_gemma":0.00001643859,"teacher_disagreement_score":0.055973195,"about_ca_system_score_codex":0.000013074935,"about_ca_system_score_gemma":0.00006972721,"threshold_uncertainty_score":0.30450794},"labels":[],"label_agreement":null},{"id":"W2144829794","doi":"10.1189/jlb.0509359","title":"Macrophages from BALB/c and CBA/Ca mice differ in their cellular responses to <i>Streptococcus pneumoniae</i>","year":2009,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Biology; Streptococcus pneumoniae; Microbiology; Pathogen; Secretion; Immune system; Immunology; Macrophage; Pneumococcal infections; Antibiotics; In vitro; Genetics","score_opus":0.008819011282555172,"score_gpt":0.23993856877192396,"score_spread":0.2311195574893688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2144829794","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98572034,0.011171352,0.00011189086,0.0022140066,0.00047680063,0.00016278544,0.000021629556,0.00001241038,0.000108805696],"genre_scores_gemma":[0.9978742,0.0007678279,0.00008351306,0.0006978341,0.00010523823,0.0000035499081,0.000024698496,0.000009996088,0.000433125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800605,0.0007047409,0.0006918792,0.00022252608,0.000029941697,0.00034483697],"domain_scores_gemma":[0.9988661,0.0004770249,0.0003246531,0.00019656673,0.00009128906,0.00004440172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051875744,0.00021858956,0.0005312286,0.0003410146,0.000082247774,0.000019524507,0.00026865493,0.00033949633,0.00014822585],"category_scores_gemma":[0.00021883758,0.00016084699,0.00011225757,0.00013458601,0.000114969414,0.00012567102,0.00006189204,0.00043272186,0.00010186431],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002096283,0.00006747248,0.007588087,0.0000027800634,0.000071938564,0.00005879914,0.0005626313,0.0000023878301,0.97758687,0.00005209412,0.0009374022,0.010973262],"study_design_scores_gemma":[0.001697635,0.0012163802,0.16440746,0.00006187435,0.000026036309,0.00019260602,0.00020324321,0.0000024745948,0.7868155,0.0005202668,0.044673916,0.00018256454],"about_ca_topic_score_codex":0.000044369215,"about_ca_topic_score_gemma":0.000012425445,"teacher_disagreement_score":0.19077131,"about_ca_system_score_codex":0.00007242294,"about_ca_system_score_gemma":0.00009278428,"threshold_uncertainty_score":0.655915},"labels":[],"label_agreement":null},{"id":"W2145256807","doi":"10.1152/ajpgi.2001.280.4.g755","title":"Colonic production and expression of IL-4, IL-6, and IL-10 in neonatal suckling rats after LPS challenge","year":2001,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Lipopolysaccharide; Cytokine; Internal medicine; Interleukin; Endocrinology; Inflammation; Proinflammatory cytokine; Interleukin 10; Medicine; Immunology; Biology","score_opus":0.00659905221774403,"score_gpt":0.21302575059779189,"score_spread":0.20642669838004785,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145256807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961586,0.0032479074,0.000021787624,0.00028744357,0.00012251904,0.00013130427,0.000007892288,0.000009341166,0.000013205914],"genre_scores_gemma":[0.9971014,0.0022382953,0.00041571018,0.000041787876,0.00010476885,0.000008810001,0.000012061936,0.000013224204,0.00006391871],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981581,0.0005364055,0.0005646922,0.0003403785,0.00004381915,0.00035660487],"domain_scores_gemma":[0.9987034,0.00027733922,0.00065070955,0.00014949469,0.00017314783,0.000045859466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031668812,0.00024417206,0.0006823523,0.00025343697,0.000093099734,0.000005552347,0.00011976341,0.00009272052,0.000082465434],"category_scores_gemma":[0.00016962097,0.00019629355,0.00007465309,0.00014168002,0.0013028458,0.00023987172,0.00013753297,0.0004562408,0.0000068360596],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0063212304,0.00010620736,0.002272039,0.00004399287,0.000043792425,0.000023884253,0.00085543795,0.00002078193,0.98105973,0.000046976358,0.00003924493,0.009166693],"study_design_scores_gemma":[0.0024320513,0.012859206,0.8240697,0.0009322103,0.00010703875,0.007926432,0.0030844412,0.00007147584,0.14562926,0.0008949316,0.0015391634,0.00045412118],"about_ca_topic_score_codex":0.00006948569,"about_ca_topic_score_gemma":0.000014640488,"teacher_disagreement_score":0.83543044,"about_ca_system_score_codex":0.000022210052,"about_ca_system_score_gemma":0.00005894874,"threshold_uncertainty_score":0.8004619},"labels":[],"label_agreement":null},{"id":"W2145427795","doi":"10.1016/j.cellimm.2011.05.016","title":"B-cell activating factor (BAFF) promotes CpG ODN-induced B cell activation and proliferation","year":2011,"lang":"en","type":"article","venue":"Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"TLR9; B-cell activating factor; Biology; B cell; CpG Oligodeoxynucleotide; CD40; Cell biology; Cytokine; Naive B cell; IL-2 receptor; Polyclonal B cell response; Molecular biology; Immunology; T cell; Antigen-presenting cell; B-cell receptor; Antibody; Immune system; Cytotoxic T cell; DNA methylation; In vitro","score_opus":0.02468936586043957,"score_gpt":0.20538947883613476,"score_spread":0.1807001129756952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145427795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99231976,0.0013274307,0.0017314523,0.00010099695,0.0004975963,0.0006023151,0.0000031808443,0.0001556412,0.0032616307],"genre_scores_gemma":[0.99763423,0.00006720837,0.00022325692,0.000051164865,0.00003936896,0.00009760941,0.00015841903,0.00004004133,0.001688688],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980782,0.00046531283,0.00048156583,0.00044092676,0.000045943703,0.00048805028],"domain_scores_gemma":[0.9989802,0.00012997538,0.00035439507,0.00040552855,0.00010732376,0.000022559923],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002480349,0.00031319907,0.00034026284,0.00025170448,0.00038251287,0.000029374838,0.00021344647,0.0006179907,0.0006841219],"category_scores_gemma":[0.000109955625,0.00029803644,0.00007978116,0.00016112608,0.00015376566,0.00045432165,0.00012639447,0.0005097106,0.0004395548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003734073,0.0002014379,0.00044306813,0.00003877354,0.00008345733,0.000003891227,0.0031548862,1.8733937e-7,0.9890243,0.00056160195,0.000056906127,0.0060581206],"study_design_scores_gemma":[0.0016118726,0.00052501366,0.005337038,0.000023784693,0.000021212,0.00003434969,0.00044806243,0.00001687435,0.9890786,0.00024662277,0.0023433906,0.0003132259],"about_ca_topic_score_codex":0.00007510243,"about_ca_topic_score_gemma":0.0000015788575,"teacher_disagreement_score":0.0057448945,"about_ca_system_score_codex":0.000062952444,"about_ca_system_score_gemma":0.00010123022,"threshold_uncertainty_score":0.9999472},"labels":[],"label_agreement":null},{"id":"W2145588631","doi":"10.1189/jlb.0312125","title":"Length of dsRNA (poly I:C) drives distinct innate immune responses, depending on the cell type","year":2013,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Biology; Myeloid; Cytokine; Cell biology; Cell; Immune system; RNA silencing; Cell type; Molecular biology; Immunology; RNA; Biochemistry; RNA interference; Gene","score_opus":0.015676603489015267,"score_gpt":0.24486170072640784,"score_spread":0.22918509723739258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145588631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98887825,0.007524499,0.00006100322,0.0010069447,0.0011074062,0.00015563717,0.0000033972606,0.000010940245,0.0012519177],"genre_scores_gemma":[0.99750936,0.0007014371,0.00006212439,0.00010158085,0.00007549641,0.0000037264376,0.000011879989,0.000014586685,0.0015197896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976735,0.0009984584,0.00084511284,0.00012937821,0.00004741827,0.00030615003],"domain_scores_gemma":[0.9972861,0.0011118023,0.0010005955,0.00028712724,0.00029403542,0.000020383628],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010055382,0.00018122852,0.00043885724,0.00027257885,0.00015749046,0.00001367743,0.0004500883,0.0002673407,0.0007460511],"category_scores_gemma":[0.0006590266,0.00010640024,0.00017970438,0.00016409028,0.0002845523,0.00013796441,0.00008540807,0.00056117965,0.00040750374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019173903,0.00007332454,0.001221923,0.000008772229,0.00018625571,0.0000056122726,0.00027318092,0.0000021635128,0.9858251,0.0012535889,0.0011981893,0.008034491],"study_design_scores_gemma":[0.0011763594,0.0014958425,0.041764926,0.00006320515,0.00004541237,0.0001962377,0.00031929812,0.0000048886027,0.9194359,0.00038542887,0.034974173,0.00013829379],"about_ca_topic_score_codex":0.00006942454,"about_ca_topic_score_gemma":0.0000023492516,"teacher_disagreement_score":0.06638917,"about_ca_system_score_codex":0.0000620743,"about_ca_system_score_gemma":0.00017533016,"threshold_uncertainty_score":0.81687367},"labels":[],"label_agreement":null},{"id":"W2145708021","doi":"10.4049/jimmunol.171.6.3119","title":"Toll-Like Receptor 4-Mediated Innate IL-10 Activates Antigen-Specific Regulatory T Cells and Confers Resistance to <i>Bordetella pertussis</i> by Inhibiting Inflammatory Pathology","year":2003,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":262,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Bordetella pertussis; TLR4; Immunology; Chemokine; Toll-like receptor; Cytokine; Biology; Innate immune system; Inflammation; Pertussis toxin; Cell biology; Immune system; Signal transduction; G protein","score_opus":0.0056517580715948566,"score_gpt":0.1940427342439803,"score_spread":0.18839097617238545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145708021","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96894974,0.027936121,0.00009079031,0.001153345,0.0011204006,0.00025911137,0.000018189072,0.00003332041,0.00043899057],"genre_scores_gemma":[0.9845937,0.012101206,0.000115644645,0.000504463,0.000040664585,0.000007756766,0.000021605469,0.00004393569,0.0025710233],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995964,0.002071732,0.0010285841,0.00025621572,0.000089577065,0.0005898765],"domain_scores_gemma":[0.9974626,0.0008977002,0.0008554172,0.00038608199,0.00034914882,0.00004908449],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0020705287,0.00033072525,0.00061376346,0.00032778244,0.0004117479,0.000027865712,0.00040928315,0.00047970036,0.0004185595],"category_scores_gemma":[0.0004154511,0.00024860498,0.00011045608,0.0002467282,0.00070507906,0.00023077514,0.00010783565,0.0008218985,0.00029224137],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025183272,0.00004785636,0.000079169775,0.000010202199,0.00024507035,0.000017869776,0.0016626691,0.000004432244,0.9694323,0.00028404559,0.02418329,0.0015147552],"study_design_scores_gemma":[0.0010560215,0.000264432,0.00070222985,0.000057253827,0.000015892134,0.00035513585,0.0010621346,1.465905e-7,0.5898839,0.000036745332,0.40639552,0.00017057963],"about_ca_topic_score_codex":0.0000037325137,"about_ca_topic_score_gemma":0.000003950235,"teacher_disagreement_score":0.38221222,"about_ca_system_score_codex":0.00010085587,"about_ca_system_score_gemma":0.00018352544,"threshold_uncertainty_score":0.9999966},"labels":[],"label_agreement":null},{"id":"W2145710202","doi":"10.1164/rccm.200808-1306oc","title":"Bacteria Challenge in Smoke-exposed Mice Exacerbates Inflammation and Skews the Inflammatory Profile","year":2009,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":110,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Medicine; Inflammation; Immunology; In vivo; Haemophilus influenzae; Lung; Ex vivo; Tumor necrosis factor alpha; Exacerbation; Pathogenesis; Mediator; Microbiology; Biology; Antibiotics; Internal medicine","score_opus":0.014564317250998427,"score_gpt":0.27417470930575216,"score_spread":0.2596103920547537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145710202","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9742412,0.019170582,0.000019534958,0.005929519,0.00016876061,0.00013378348,0.000001239688,0.00000982502,0.00032552835],"genre_scores_gemma":[0.9987025,0.00047465993,0.000026694415,0.0005985404,0.00016961296,0.0000047556646,0.0000039104557,0.000007217912,0.000012071932],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983467,0.00060626346,0.0006021017,0.00014046542,0.00008158384,0.00022291658],"domain_scores_gemma":[0.9988585,0.00050306757,0.00023521474,0.00013594718,0.00021764867,0.000049591803],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008568333,0.00015640588,0.0003913045,0.00019053675,0.00013117719,0.000015109266,0.00012503164,0.00009575347,0.00007542463],"category_scores_gemma":[0.00069285877,0.00009875081,0.000039069822,0.00013943415,0.00097050506,0.0002190054,0.000023711898,0.00042869052,0.000004429414],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012267175,0.000037192258,0.0030634801,0.00007609748,0.000040532697,0.00006233801,0.009474791,7.148802e-7,0.58074033,0.002323069,0.00017940327,0.40277535],"study_design_scores_gemma":[0.009111584,0.029668126,0.57643265,0.0015920459,0.00035931147,0.00093195075,0.07828445,0.000010757288,0.19332778,0.0013658013,0.1081015,0.0008140687],"about_ca_topic_score_codex":0.000010527581,"about_ca_topic_score_gemma":0.0000068008085,"teacher_disagreement_score":0.57336915,"about_ca_system_score_codex":0.00003228908,"about_ca_system_score_gemma":0.00007221788,"threshold_uncertainty_score":0.40269414},"labels":[],"label_agreement":null},{"id":"W2145741165","doi":"10.1074/mcp.m113.033340","title":"Discovery of Novel Disease-specific and Membrane-associated Candidate Markers in a Mouse Model of Multiple Sclerosis","year":2013,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Cancer Institute","keywords":"Experimental autoimmune encephalomyelitis; Multiple sclerosis; Peripheral blood mononuclear cell; Proteomics; Immune system; Encephalomyelitis; Proteome; Biology; Demyelinating disease; Autoimmune disease; Immunology; Pathology; Antibody; Medicine; Bioinformatics; Biochemistry; In vitro","score_opus":0.016531997562080344,"score_gpt":0.18361124797204956,"score_spread":0.1670792504099692,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2145741165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896148,0.00084568764,0.008437441,0.000061376435,0.000036546044,0.00087714073,0.00008656083,0.000013943602,0.000026514044],"genre_scores_gemma":[0.99824154,0.00024747645,0.00068356737,0.000019363033,0.0000016277221,0.000082918465,0.00016977661,0.000026182235,0.000527564],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99882764,0.00015987302,0.00045913912,0.00023964111,0.00005714776,0.00025655533],"domain_scores_gemma":[0.99931103,0.000043843425,0.00023644253,0.00030850168,0.00007835755,0.000021831971],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025713176,0.0001742877,0.0003242667,0.00016560487,0.00004394787,0.000017739882,0.00015195142,0.00018424344,0.000013794937],"category_scores_gemma":[0.000104774874,0.00015786545,0.00010075183,0.00012139271,0.00017401471,0.00020066058,0.00009606758,0.0001642168,0.0000072073644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005031364,0.000206801,0.0007723131,0.000060010447,0.00008721342,0.000001369889,0.00020659855,0.0013560812,0.99644595,0.00014052562,0.000013872641,0.00020610436],"study_design_scores_gemma":[0.0024145637,0.000048883863,0.0018282903,0.000089647416,0.000023897877,6.7272026e-7,0.00006373526,0.0126023395,0.9826937,0.000055694265,0.000010166614,0.00016841963],"about_ca_topic_score_codex":0.00055371004,"about_ca_topic_score_gemma":0.000016101882,"teacher_disagreement_score":0.013752284,"about_ca_system_score_codex":0.000046178582,"about_ca_system_score_gemma":0.0000732964,"threshold_uncertainty_score":0.64375657},"labels":[],"label_agreement":null},{"id":"W2146065571","doi":"10.4049/jimmunol.177.9.6540","title":"Human CD4+CD25+ Regulatory T Lymphocytes Inhibit Lipopolysaccharide-Induced Monocyte Survival through a Fas/Fas Ligand-Dependent Mechanism","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Christie (Canada)","funders":"Canadian Institutes of Health Research; Hospices Civils de Lyon","keywords":"Fas ligand; CD14; Monocyte; Immunology; Septic shock; Fas receptor; Apoptosis; Lipopolysaccharide; Biology; Cell biology; Cancer research; Immune system; Sepsis; Programmed cell death","score_opus":0.015908919547845894,"score_gpt":0.24282086296993136,"score_spread":0.22691194342208545,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146065571","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.985111,0.010156058,0.00042845221,0.0007915097,0.0022418336,0.0002518466,0.0000043344326,0.00006608936,0.0009488895],"genre_scores_gemma":[0.9963128,0.00060979626,0.000043488308,0.00014533463,0.000255426,0.000008066174,0.000015801355,0.000047068937,0.002562204],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962941,0.0012638139,0.0013903324,0.00023784956,0.00015866765,0.00065524323],"domain_scores_gemma":[0.99735624,0.00032033076,0.0013121984,0.0006630514,0.00032781283,0.00002037335],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0018670474,0.00039356807,0.00077739067,0.00030793506,0.0006494911,0.000039106013,0.0008673864,0.00060243165,0.00026110202],"category_scores_gemma":[0.00010547088,0.0002817808,0.000312198,0.00017015611,0.00035414213,0.000435681,0.00025116088,0.00092972454,0.00037814752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011693685,0.00014605738,0.00003926789,0.000008114104,0.00061955245,0.00003224967,0.0008908825,0.000026294838,0.97617424,0.019167328,0.0005112382,0.0012154162],"study_design_scores_gemma":[0.0035766496,0.0008986189,0.0026552249,0.00007777797,0.00021968769,0.002058336,0.0012512071,0.0000021742346,0.9775549,0.009084848,0.0023228694,0.00029769784],"about_ca_topic_score_codex":0.0009990189,"about_ca_topic_score_gemma":0.0000814151,"teacher_disagreement_score":0.011201827,"about_ca_system_score_codex":0.0003163197,"about_ca_system_score_gemma":0.0002948746,"threshold_uncertainty_score":0.99996346},"labels":[],"label_agreement":null},{"id":"W2146457764","doi":"10.1016/j.exphem.2007.02.015","title":"G-CSF treatment of canine cyclical neutropenia: A comprehensive mathematical model","year":2007,"lang":"en","type":"article","venue":"Experimental Hematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"University of Washington","keywords":"Haematopoiesis; Pharmacokinetics; Neutropenia; Hematopoietic growth factor; Granulocyte colony-stimulating factor; Granulocyte; Drug; Medicine; Pharmacology; Immunology; Biology; Internal medicine; Stem cell; Chemotherapy","score_opus":0.02531404669826776,"score_gpt":0.3088003671215914,"score_spread":0.28348632042332367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2146457764","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9821661,0.009494431,0.0018829373,0.00014739647,0.00018271602,0.00035807988,0.000005571995,0.0000593191,0.0057034297],"genre_scores_gemma":[0.9977594,0.000026391359,0.00067432347,0.00006830721,0.000014565566,0.000035127294,0.00005631529,0.000018260836,0.001347323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986947,0.00009571813,0.00054988894,0.00023504753,0.000039930404,0.000384683],"domain_scores_gemma":[0.9993205,0.00018350483,0.00013797262,0.00027523603,0.000050923518,0.000031878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007947301,0.00021029105,0.0005636464,0.00011685145,0.00009108152,0.00000363974,0.00012523726,0.00025789897,0.0008359699],"category_scores_gemma":[0.000012515535,0.00017198757,0.00013844656,0.000075636104,0.00031385187,0.00006684321,0.000060682047,0.00009145041,0.0005185568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011063379,0.0009016656,0.0001350763,0.000013089895,0.00013778813,0.00003385169,0.0016240398,0.000022998714,0.8791931,0.11581336,0.00042407084,0.0005945787],"study_design_scores_gemma":[0.002208951,0.00076693896,0.00024557387,0.000014777162,0.000023580491,0.00078138633,0.0008619524,0.00027672216,0.9926551,0.0002674161,0.001750845,0.00014675673],"about_ca_topic_score_codex":0.000037346716,"about_ca_topic_score_gemma":0.000005506304,"teacher_disagreement_score":0.11554594,"about_ca_system_score_codex":0.00009526751,"about_ca_system_score_gemma":0.000041677053,"threshold_uncertainty_score":0.91532844},"labels":[],"label_agreement":null},{"id":"W2147371361","doi":"10.3109/08820130009105141","title":"The Role of Inflammatory Mediators in the Mechanism of the Host Immune Response Induced by Ischemia-Reperfusion Injury","year":2000,"lang":"en","type":"article","venue":"Immunological Investigations","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver Hospital and Health Sciences Centre","funders":"","keywords":"Immune system; Immunology; CD8; MHC class II; Major histocompatibility complex; Flow cytometry; Medicine; Ex vivo; CD3; Internal medicine; Endocrinology; In vivo; Biology","score_opus":0.0070811782576381006,"score_gpt":0.21595003531762616,"score_spread":0.20886885705998806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147371361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98974335,0.0067423023,0.0000013313763,0.0022713805,0.00019339827,0.00048692402,0.000019079145,0.000028088185,0.0005141237],"genre_scores_gemma":[0.9988744,0.00047024127,0.00001174182,0.00013122887,0.000010714987,0.00010942776,0.000029263709,0.000011065383,0.00035189444],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963756,0.0021437032,0.0008360704,0.00017507181,0.00012499584,0.000344524],"domain_scores_gemma":[0.99743605,0.0013529126,0.00035893766,0.0007512154,0.000085897474,0.0000150069445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018997478,0.00019729699,0.00025911749,0.000078474324,0.00054302724,0.000016149754,0.0009145815,0.0004269853,0.00031349552],"category_scores_gemma":[0.0012334483,0.00009889458,0.00015886078,0.00052146876,0.00112845,0.00015248444,0.00014812952,0.00070760417,0.00009590795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006173608,0.0000958076,0.00032493193,0.0000027998476,0.000046641002,1.7068349e-7,0.0017225702,0.0000015293333,0.9838947,0.009411036,0.000104289364,0.003778186],"study_design_scores_gemma":[0.00042348672,0.0001534739,0.025630621,0.0000446824,0.00002573723,0.000009140324,0.0014936901,0.000004837827,0.9539079,0.002468931,0.015722007,0.000115507326],"about_ca_topic_score_codex":0.00011914545,"about_ca_topic_score_gemma":0.000005483318,"teacher_disagreement_score":0.029986791,"about_ca_system_score_codex":0.000044849447,"about_ca_system_score_gemma":0.00015828777,"threshold_uncertainty_score":0.41765815},"labels":[],"label_agreement":null},{"id":"W2147647424","doi":"10.1186/1743-422x-5-154","title":"Central nervous system Toll-like receptor expression in response to Theiler's murine encephalomyelitis virus-induced demyelination disease in resistant and susceptible mouse strains","year":2008,"lang":"en","type":"article","venue":"Virology Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Multiple Sclerosis Society; Multiple Sclerosis Society of Canada","keywords":"Biology; TLR3; Immunology; Multiple sclerosis; TLR2; TLR7; TLR4; Innate immune system; Virology; Receptor; Toll-like receptor; Virus; Demyelinating disease; Immune system; Genetics","score_opus":0.010920307757428372,"score_gpt":0.22267696973411136,"score_spread":0.211756661976683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147647424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968849,0.0009671883,0.00013032554,0.0010266671,0.0005311369,0.0003668429,0.000021697466,0.000041958272,0.00002930226],"genre_scores_gemma":[0.99870515,0.00043674491,0.00011476148,0.00012761974,0.000075046366,0.000036686477,0.00003318302,0.000022473365,0.0004483592],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.996355,0.0018597174,0.0007180028,0.00034376179,0.00008559781,0.00063794974],"domain_scores_gemma":[0.9991674,0.00018811376,0.00021190742,0.00023816411,0.00006892003,0.00012548744],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010591792,0.00023749798,0.00037152495,0.00071790774,0.00035885055,0.000023239341,0.00021146965,0.00032543513,0.00018397503],"category_scores_gemma":[0.0003117528,0.00021334371,0.00007195771,0.00022662703,0.00013302435,0.00029560545,0.000088387744,0.0006330412,0.00007186087],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01671735,0.000110720095,0.005320995,0.000012986684,0.000021596044,0.0003927452,0.0023992045,0.0001859736,0.9731479,0.000043072963,0.00034209297,0.0013053432],"study_design_scores_gemma":[0.0046036784,0.001067638,0.8659656,0.00022768686,0.00001688181,0.0008857627,0.0011145753,0.000066520435,0.12196933,0.000029600153,0.0037142637,0.00033847603],"about_ca_topic_score_codex":0.00010323866,"about_ca_topic_score_gemma":0.00016410033,"teacher_disagreement_score":0.8606446,"about_ca_system_score_codex":0.0002899994,"about_ca_system_score_gemma":0.0002456839,"threshold_uncertainty_score":0.8699904},"labels":[],"label_agreement":null},{"id":"W2147890509","doi":"10.1093/hmg/ddt335","title":"Different selective pressures shape the evolution of Toll-like receptors in human and African great ape populations","year":2013,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"National Institute of General Medical Sciences; Agence Nationale de la Recherche; Howard Hughes Medical Institute","keywords":"Biology; Evolutionary biology; Negative selection; Innate immune system; Phylogenetics; Hominidae; Gene; Population; Genetics; Primate; Receptor; Genome; Ecology; Biological evolution","score_opus":0.012015844459077872,"score_gpt":0.23753661063572254,"score_spread":0.22552076617664465,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147890509","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99567044,0.003050284,0.00012968363,0.00007200629,0.0001021218,0.00043766253,0.0000016681585,0.0000147481915,0.0005214068],"genre_scores_gemma":[0.99928486,0.00003074657,0.000029419556,0.000017851029,0.000008595747,0.000050081446,0.000047225447,0.00001260171,0.00051860616],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99900705,0.00032033565,0.00027725508,0.00016717419,0.000043555192,0.0001846474],"domain_scores_gemma":[0.99954236,0.000029241397,0.00011449538,0.0002283689,0.00007418024,0.000011338907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000088020686,0.00012859912,0.00016627033,0.00013050392,0.00019482628,0.000015832476,0.00013080164,0.00013150461,0.00019815311],"category_scores_gemma":[0.000020168261,0.00009993748,0.000046722515,0.00010333579,0.00017133058,0.000037773858,0.00007093838,0.0001506255,0.000011977525],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020897354,0.000053009928,0.012640374,0.000011006845,0.000067500514,5.282779e-7,0.0010660072,0.00006771341,0.9806301,0.0032381793,0.0004893284,0.0017153685],"study_design_scores_gemma":[0.00064135593,0.0002674908,0.8828394,0.00002863624,0.00006885112,0.000008474861,0.00046889685,0.0001583823,0.11057609,0.003643847,0.0011216761,0.00017692926],"about_ca_topic_score_codex":0.0004054239,"about_ca_topic_score_gemma":0.0001793619,"teacher_disagreement_score":0.87019897,"about_ca_system_score_codex":0.000050674164,"about_ca_system_score_gemma":0.000016551036,"threshold_uncertainty_score":0.40753323},"labels":[],"label_agreement":null},{"id":"W2147990016","doi":"10.1152/ajpendo.00516.2010","title":"Neonatal programming of innate immune function","year":2010,"lang":"en","type":"review","venue":"American Journal of Physiology-Endocrinology and Metabolism","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Immune system; Endocrine system; Lipopolysaccharide; Physiology; Innate immune system; Biology; Disease; Neuroscience; Immunology; Medicine; Endocrinology; Internal medicine; Hormone","score_opus":0.010961147122322913,"score_gpt":0.26678081118544655,"score_spread":0.2558196640631236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2147990016","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.036336955,0.9607733,0.000041584764,0.00003809281,0.0024496892,0.00028383266,0.000016092607,0.000023549837,0.000036910038],"genre_scores_gemma":[0.015609841,0.9835896,0.00026796927,0.000028019866,0.00022727612,0.000025701194,0.00007817676,0.000041903913,0.00013151902],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960451,0.0012358234,0.0017123441,0.00035314047,0.00006153058,0.00059205067],"domain_scores_gemma":[0.9950543,0.0004586229,0.0037218207,0.00041482662,0.00030606278,0.00004437206],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005295328,0.00052274833,0.0036754701,0.0007936834,0.0001634285,0.000008990703,0.0004931836,0.0005545759,0.00010880558],"category_scores_gemma":[0.00021476806,0.00038442458,0.00078490406,0.00036898148,0.0020264895,0.00020304587,0.00019269678,0.002282464,0.000048665985],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004149801,0.00006981984,0.0000018153578,0.0004962717,0.0012732992,0.000009289681,0.00015423833,1.7623861e-7,0.056139495,0.0012558214,0.000033242122,0.9401516],"study_design_scores_gemma":[0.0008905486,0.00083197886,0.0008676557,0.000671693,0.001915962,0.003024026,0.00022991352,6.855705e-8,0.0028143912,0.00017732663,0.98826736,0.0003090498],"about_ca_topic_score_codex":0.00003434335,"about_ca_topic_score_gemma":0.000001393004,"teacher_disagreement_score":0.98823416,"about_ca_system_score_codex":0.00001824419,"about_ca_system_score_gemma":0.0003318665,"threshold_uncertainty_score":0.99986076},"labels":[],"label_agreement":null},{"id":"W2148079484","doi":"10.1128/cvi.00659-12","title":"Elevated Inflammatory Mediators in Adults with Oculorespiratory Syndrome following Influenza Immunization: a Public Health Agency of Canada/Canadian Institutes of Health Research Influenza Research Network Study","year":2013,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Public Health Agency of Canada; Izaak Walton Killam Health Centre; Dalhousie University; BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research; Health Canada; Michael Smith Health Research BC; Public Health Agency of Canada","keywords":"Medicine; Vaccination; Immunology; Adverse effect; Immunization; Internal medicine; Influenza vaccine; Immune system; Pediatrics","score_opus":0.10656059614967975,"score_gpt":0.380457315962112,"score_spread":0.27389671981243224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148079484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97583985,0.019825866,0.0000023897483,0.0018661136,0.0004938028,0.001877659,0.0000050952253,0.000024360626,0.000064884225],"genre_scores_gemma":[0.99860156,0.00071140204,0.000019702999,0.00039118048,0.000031757645,0.00011678742,0.000051241354,0.000030450523,0.000045951445],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.986385,0.00815988,0.0029277885,0.0005667459,0.00025238533,0.0017082347],"domain_scores_gemma":[0.99559814,0.0017334854,0.00065530144,0.0008156107,0.0010089163,0.00018855774],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.015544282,0.00028277832,0.0012586071,0.001204792,0.0007401,0.000022428303,0.0006283235,0.00042448295,0.00014474792],"category_scores_gemma":[0.0028644074,0.0002397817,0.00007937656,0.0019097866,0.00063924515,0.0003767627,0.00036404902,0.001745377,0.00003051834],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009862205,0.0004885401,0.9699038,0.00019278347,0.00070929166,0.00003635456,0.004458737,0.00002664839,0.000688224,0.00060479395,0.0016645847,0.020239986],"study_design_scores_gemma":[0.005725078,0.0045556473,0.976045,0.00045505204,0.000007561741,0.000022370848,0.0036616267,0.000006956469,0.00010660102,0.00011964061,0.0090893125,0.00020512476],"about_ca_topic_score_codex":0.5705342,"about_ca_topic_score_gemma":0.432853,"teacher_disagreement_score":0.13768123,"about_ca_system_score_codex":0.00030233015,"about_ca_system_score_gemma":0.010238248,"threshold_uncertainty_score":0.9953728},"labels":[],"label_agreement":null},{"id":"W2148236325","doi":"10.1189/jlb.1004607","title":"Local coordination verses systemic disregulation: complexities in leukocyte recruitment revealed by local and systemic activation of TLR4 in vivo","year":2005,"lang":"en","type":"review","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Biology; In vivo; Immunology; Cell biology; Genetics","score_opus":0.0567024050480467,"score_gpt":0.32529315364984696,"score_spread":0.26859074860180027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148236325","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.029522112,0.9672755,0.0015524062,0.00008456257,0.0005197175,0.00095888745,0.000024970379,0.0000106196685,0.00005123908],"genre_scores_gemma":[0.30772313,0.6917587,0.000020735728,0.000014797095,0.000059655074,0.000045079596,0.00017654862,0.000022027907,0.00017934926],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99478596,0.0019449582,0.0025660351,0.00029253258,0.000080739606,0.00032977108],"domain_scores_gemma":[0.9962569,0.0007117698,0.0025931187,0.0002167349,0.00019509919,0.000026404645],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001325755,0.0004085103,0.002344819,0.0010301828,0.00006045976,0.000012070114,0.00026940618,0.0009967556,0.000053671654],"category_scores_gemma":[0.00012613578,0.0003311154,0.00025752478,0.00030869892,0.00035650833,0.00026070583,0.00007352572,0.0006547726,0.000011040442],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001920464,0.00021189549,0.00024277359,0.007826418,0.0007046871,0.000021512486,0.0006864785,0.00019675452,0.039273787,0.0013182412,0.001362956,0.94623405],"study_design_scores_gemma":[0.006592521,0.0014439492,0.0003175815,0.043326475,0.0005722733,0.0046236506,0.0019382847,0.00009444088,0.009897664,0.00012078739,0.930283,0.0007893569],"about_ca_topic_score_codex":0.00009189412,"about_ca_topic_score_gemma":0.0000252804,"teacher_disagreement_score":0.9454447,"about_ca_system_score_codex":0.0013705168,"about_ca_system_score_gemma":0.000419289,"threshold_uncertainty_score":0.9999141},"labels":[],"label_agreement":null},{"id":"W2148673830","doi":"10.1128/cvi.00063-14","title":"Activation of Innate Immune Responses by Haemophilus influenzae Lipooligosaccharide","year":2014,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"NOSM University; National Research Council Canada; Lakehead University","funders":"","keywords":"Innate immune system; Haemophilus influenzae; Microbiology; Proinflammatory cytokine; Biology; Immunology; Tumor necrosis factor alpha; Immune system; Lipopolysaccharide; Acquired immune system; Antigen; Antigen-presenting cell; T cell; Inflammation","score_opus":0.01865276345053871,"score_gpt":0.2974023068988877,"score_spread":0.27874954344834896,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148673830","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99231154,0.0042175045,0.0003090104,0.0019645218,0.0006402306,0.00020309733,0.000009612979,0.00007101697,0.00027345773],"genre_scores_gemma":[0.9965428,0.0013375647,0.000045018285,0.00037207754,0.000054149587,0.000018031358,0.00011043387,0.000019518446,0.0015004198],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969042,0.0010674536,0.0012851811,0.000363599,0.00003456189,0.00034500632],"domain_scores_gemma":[0.99734294,0.0014924991,0.0004956439,0.00048102502,0.00016338888,0.00002448407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013246833,0.00023265075,0.00071676826,0.00019007378,0.00016517869,0.00001107892,0.00027452194,0.00052941573,0.00018270501],"category_scores_gemma":[0.0021604607,0.00019759363,0.00014517551,0.00017318352,0.00035344085,0.00019265199,0.00020813035,0.00053605816,0.00018827239],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039688447,0.00017763926,0.008041771,0.000021594251,0.0003000248,6.046524e-7,0.00010812843,8.498422e-7,0.8951471,0.0017460737,0.0020122603,0.08847514],"study_design_scores_gemma":[0.0046136514,0.0013684704,0.2895773,0.00006785682,0.0000642278,0.000049813152,0.000060850245,0.000019490546,0.5980591,0.0010362647,0.10481609,0.00026687165],"about_ca_topic_score_codex":0.00013148383,"about_ca_topic_score_gemma":0.0000023741818,"teacher_disagreement_score":0.29708797,"about_ca_system_score_codex":0.000011378053,"about_ca_system_score_gemma":0.000053561565,"threshold_uncertainty_score":0.8057635},"labels":[],"label_agreement":null},{"id":"W2148835099","doi":"10.4049/jimmunol.178.12.7833","title":"Identification and Characterization of Novel Bone Marrow Myeloid DEC205+Gr-1+ Cell Subsets That Differentially Express Chemokine and TLRs","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Discovery Centre","funders":"University of Pennsylvania","keywords":"Chemokine; Bone marrow; Identification (biology); Myeloid; Biology; Cell biology; Immunology; Inflammation","score_opus":0.009337618020551386,"score_gpt":0.2130366965086011,"score_spread":0.20369907848804972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2148835099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98861957,0.0044005355,0.005933854,0.00038300437,0.0004766765,0.0001375155,0.0000044069657,0.0000074522573,0.0000369821],"genre_scores_gemma":[0.9964789,0.0029320817,0.00004289438,0.00003167201,0.000028243272,0.0000011569284,0.000032386004,0.000012151509,0.0004405094],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99875575,0.00021840089,0.0006674934,0.000097775956,0.000054674998,0.00020590262],"domain_scores_gemma":[0.9983574,0.00022645989,0.0010164343,0.00020195471,0.0001840869,0.000013656824],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001268655,0.0001380892,0.00031923366,0.00022357031,0.0001095367,0.000012457861,0.0001906786,0.00021942728,0.00009187158],"category_scores_gemma":[0.00006654634,0.00009955561,0.0000513426,0.000086043794,0.0003224001,0.00022281439,0.00008306455,0.00028494126,0.000005561801],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016991347,0.00010044507,0.00054388796,0.00002357903,0.0001298636,0.0000016938552,0.0012093367,4.6395712e-7,0.9904877,0.000090703965,0.000020268364,0.0056929556],"study_design_scores_gemma":[0.0016067498,0.00016766238,0.18979177,0.000036659992,0.0000855955,0.00058545766,0.00033611536,0.0000037045247,0.80655,0.00002801445,0.00073198776,0.00007624345],"about_ca_topic_score_codex":0.000012746719,"about_ca_topic_score_gemma":0.000003506469,"teacher_disagreement_score":0.18924788,"about_ca_system_score_codex":0.000020151505,"about_ca_system_score_gemma":0.000031932344,"threshold_uncertainty_score":0.405976},"labels":[],"label_agreement":null},{"id":"W2149103864","doi":"10.1183/13993003/erj.42.suppl_57.4626","title":"Role of Toll-Like Receptors in Tuberculosis Infection","year":2013,"lang":"en","type":"article","venue":"European Respiratory Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Immunology; Tuberculosis; Medicine; TLR2; Mycobacterium tuberculosis; Immunity; Toll-like receptor; Disease; Receptor; Population; Immune system; Innate immune system; Internal medicine; Environmental health; Pathology","score_opus":0.009206645441676792,"score_gpt":0.21505959334476496,"score_spread":0.20585294790308817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149103864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98739547,0.0020810594,0.000016008993,0.000048040274,0.0007238185,0.00011283959,3.5953622e-7,0.000021217436,0.009601198],"genre_scores_gemma":[0.9988981,0.00015601607,0.000019036563,0.00014428234,0.00006851406,0.000003594472,0.0000035785574,0.000019420304,0.0006874638],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99782187,0.0012777586,0.0005283769,0.00011552098,0.00004281798,0.0002136693],"domain_scores_gemma":[0.9994322,0.000045927784,0.00023138497,0.0001614973,0.000106258434,0.000022739425],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0009282517,0.00011292896,0.00016861627,0.00032039647,0.00011310246,0.000026005217,0.00013128141,0.00008190146,0.0018128813],"category_scores_gemma":[0.000107451764,0.00009805079,0.00009322293,0.00015293287,0.000069099064,0.00031814893,0.000044786135,0.0004190679,0.0020773425],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008233997,0.00006613277,0.028555589,0.0000066588727,0.000052931806,0.0000055193327,0.000512524,0.000026187437,0.8947603,0.000039866994,0.0063686664,0.06952329],"study_design_scores_gemma":[0.0011847337,0.00033158733,0.46557075,0.00009175158,0.000015153002,0.00015646558,0.0002873811,0.0000031129123,0.16413532,0.000068835965,0.3679775,0.000177402],"about_ca_topic_score_codex":0.000042166215,"about_ca_topic_score_gemma":0.0000065795507,"teacher_disagreement_score":0.730625,"about_ca_system_score_codex":0.000049559992,"about_ca_system_score_gemma":0.00004341211,"threshold_uncertainty_score":0.9990996},"labels":[],"label_agreement":null},{"id":"W2149116091","doi":"10.1097/01.shk.0000180074.69143.77","title":"IMPLICATION OF TOLL-LIKE RECEPTOR AND TUMOR NECROSIS FACTOR α SIGNALING IN SEPTIC SHOCK","year":2005,"lang":"en","type":"review","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":152,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Toronto; University Health Network","funders":"","keywords":"Septic shock; Tumor necrosis factor alpha; TLR4; Sepsis; Lipopolysaccharide; Immunology; Toll-like receptor; Signal transduction; Cytokine; Medicine; Inflammation; Immune system; Proinflammatory cytokine; Biology; Innate immune system; Cell biology","score_opus":0.026049001768548737,"score_gpt":0.2970014441831835,"score_spread":0.2709524424146348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149116091","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0114225205,0.9873955,0.0000143770885,0.00002509269,0.00025925328,0.0006619945,0.00005422031,0.00003059578,0.0001364499],"genre_scores_gemma":[0.0027200093,0.9951128,0.00010031351,0.00002052065,0.000044677938,0.00006298859,0.00040478795,0.000037939768,0.0014960102],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981403,0.00032491938,0.0008629073,0.0003434958,0.00003664239,0.00029176794],"domain_scores_gemma":[0.99889535,0.0002530564,0.00045440407,0.00033180972,0.000048029677,0.000017346372],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00023749375,0.00031595913,0.0011336148,0.00031683763,0.00006301908,0.000014904901,0.00020761699,0.0004770224,0.0005776293],"category_scores_gemma":[0.00007491985,0.00027294172,0.0002216313,0.0002115129,0.000080573685,0.0001065805,0.000082007165,0.0003852383,0.00037082948],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000054279182,0.000040738934,0.000015252578,0.0021884574,0.0001439008,8.923877e-7,0.00025707245,5.5964364e-7,0.036160022,0.000054569315,0.00058023236,0.960504],"study_design_scores_gemma":[0.0003643204,0.000088263536,0.000056175097,0.002925887,0.00016602236,0.00005018467,0.000043398064,0.0000011799439,0.0053402814,0.000011625708,0.990658,0.00029465457],"about_ca_topic_score_codex":0.000037902457,"about_ca_topic_score_gemma":0.000010896213,"teacher_disagreement_score":0.9900778,"about_ca_system_score_codex":0.00012345187,"about_ca_system_score_gemma":0.00017815696,"threshold_uncertainty_score":0.9999723},"labels":[],"label_agreement":null},{"id":"W2149323922","doi":"10.1016/s0165-0270(00)00201-6","title":"The detection and quantitation of inflammation in the central nervous system during experimental allergic encephalomyelitis using the radiopharmaceutical 99mTc-RP128","year":2000,"lang":"en","type":"article","venue":"Journal of Neuroscience Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bayer (Canada)","funders":"","keywords":"Encephalomyelitis; Inflammation; In vivo; Central nervous system; Multiple sclerosis; Experimental autoimmune encephalomyelitis; Immunology; Medicine; Pharmacology; Pathology; Biology; Internal medicine","score_opus":0.03810574103611562,"score_gpt":0.3600076305825081,"score_spread":0.3219018895463925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2149323922","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940093,0.002067154,0.0028839726,0.00025391675,0.00060417753,0.00015616122,2.6907836e-7,0.0000040854325,0.000020959435],"genre_scores_gemma":[0.99918616,0.00036035138,0.0003662809,0.000019951372,0.000045485376,0.0000023834198,1.2028596e-7,0.000003696323,0.000015600084],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99677056,0.0023535127,0.000495177,0.000091725495,0.00009988226,0.0001891463],"domain_scores_gemma":[0.9990615,0.00046447886,0.0003031591,0.00011348268,0.000045824876,0.000011513541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025316507,0.00007919908,0.00013096104,0.000082703154,0.00044882266,0.000052934112,0.00023932454,0.00005265751,0.0000058410146],"category_scores_gemma":[0.00021530584,0.000040555373,0.000060807106,0.00023771975,0.0003036755,0.00031199408,0.000018772887,0.000255025,6.1895133e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002829588,0.000010754646,0.000056901485,0.000007548924,0.0000048400025,0.000005004591,0.0021532904,0.00052434555,0.959141,0.00010911609,4.642945e-7,0.037703756],"study_design_scores_gemma":[0.0005668637,0.00019428214,0.1148118,0.000044710046,0.000021869695,0.0019163856,0.003820493,0.0062985974,0.87140405,0.00002148389,0.0008428281,0.00005661348],"about_ca_topic_score_codex":0.000022521162,"about_ca_topic_score_gemma":0.0000018490521,"teacher_disagreement_score":0.1147549,"about_ca_system_score_codex":0.00005324874,"about_ca_system_score_gemma":0.000040063882,"threshold_uncertainty_score":0.34520262},"labels":[],"label_agreement":null},{"id":"W2150189819","doi":"10.1002/rcm.5084","title":"A new rapid and micro‐scale hydrolysis, using triethylamine citrate, for lipopolysaccharide characterization by mass spectrometry","year":2011,"lang":"en","type":"article","venue":"Rapid Communications in Mass Spectrometry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Chemistry; Lipid A; Lipopolysaccharide; Mass spectrometry; Escherichia coli; Triethylamine; Molecule; Hydrolysis; Moiety; Matrix-assisted laser desorption/ionization; Chromatography; Biochemistry; Combinatorial chemistry; Organic chemistry; Desorption","score_opus":0.024135745939112847,"score_gpt":0.25383542265408504,"score_spread":0.22969967671497218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150189819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83638084,0.019702123,0.13937014,0.00091789884,0.0003789818,0.0012031037,0.00012028982,0.00018277919,0.0017438331],"genre_scores_gemma":[0.89551,0.008061974,0.09344573,0.00011813034,0.000059838265,0.0001125064,0.0012033856,0.000068276786,0.0014201357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997567,0.0004805802,0.00083140394,0.00046972628,0.00007089646,0.0005803873],"domain_scores_gemma":[0.9976603,0.00032184442,0.00041491233,0.001457722,0.00008973617,0.00005549494],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008132458,0.000352752,0.00056498987,0.0010362719,0.00038998234,0.000061623585,0.0008936305,0.0004098829,0.00067515194],"category_scores_gemma":[0.00012600714,0.0003848488,0.00015615638,0.0009826699,0.00024139804,0.00045225793,0.00017896655,0.00057187723,0.000046742378],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032457078,0.00016542677,0.0015390143,0.000023621285,0.00018081523,5.3544335e-7,0.0005431107,3.1964515e-7,0.9918084,0.00092219375,0.000209274,0.004282714],"study_design_scores_gemma":[0.0024059308,0.0003512796,0.007070918,0.000058882626,0.00013612563,0.000046249163,0.00042410722,0.00033435115,0.9819359,0.001324223,0.0054261163,0.00048588598],"about_ca_topic_score_codex":0.00018288496,"about_ca_topic_score_gemma":0.000017223416,"teacher_disagreement_score":0.05912918,"about_ca_system_score_codex":0.00020097183,"about_ca_system_score_gemma":0.00013072448,"threshold_uncertainty_score":0.99986035},"labels":[],"label_agreement":null},{"id":"W2150532865","doi":"10.1084/jem.20081779","title":"Increased NOD2-mediated recognition of <i>N</i>-glycolyl muramyl dipeptide","year":2009,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":226,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Muramyl dipeptide; NOD2; Microbiology; Peptidoglycan; Secretion; Muramic acid; Biology; Tumor necrosis factor alpha; Innate immune system; Immunity; Immune system; Acquired immune system; Chemistry; Bacteria; Immunology; Biochemistry; Genetics","score_opus":0.015249141334990328,"score_gpt":0.26218966842222036,"score_spread":0.24694052708723002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150532865","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852554,0.011389848,0.000033260432,0.0015311576,0.0003967815,0.00013660335,0.000002205677,0.00000964224,0.0012451087],"genre_scores_gemma":[0.998897,0.00032991165,0.000023970812,0.0005089801,0.00010144688,0.0000011388632,0.0000323117,0.000006189253,0.00009904396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987542,0.00032983025,0.00062755466,0.00005388463,0.00008909219,0.00014541444],"domain_scores_gemma":[0.99884003,0.00030765787,0.0005593145,0.0001402063,0.0001297668,0.000023028673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083475903,0.00011429742,0.0003115183,0.0001377793,0.000074911775,0.0000021501683,0.00019018498,0.0000867079,0.0008592907],"category_scores_gemma":[0.00025638254,0.000065326516,0.00006930754,0.00013037717,0.00022158663,0.00014092334,0.000015327732,0.00023110987,0.000050433515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002538226,0.00014190258,0.000032337684,0.0000028732684,0.00007430282,0.0000056176727,0.0016591226,5.907846e-7,0.98838,0.000024396635,0.003223807,0.003916799],"study_design_scores_gemma":[0.0034340282,0.0028704938,0.0034285113,0.00020218569,0.00007933522,0.00044797256,0.00244042,0.000002273742,0.9844475,0.000095851305,0.0024826585,0.00006877398],"about_ca_topic_score_codex":0.00005450572,"about_ca_topic_score_gemma":6.815871e-7,"teacher_disagreement_score":0.013641614,"about_ca_system_score_codex":0.000038343933,"about_ca_system_score_gemma":0.000040013554,"threshold_uncertainty_score":0.9408631},"labels":[],"label_agreement":null},{"id":"W2150587815","doi":"10.1124/jpet.103.062216","title":"Tumor Necrosis Factor-α-Induced Cytokine-Induced Neutrophil Chemoattractant-1 (CINC-1) Production by Rat Gastric Epithelial Cells: Role of Reactive Oxygen Species and Nuclear Factor-κB","year":2004,"lang":"en","type":"article","venue":"Journal of Pharmacology and Experimental Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":65,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"","keywords":"Tumor necrosis factor alpha; Cytokine; Reactive oxygen species; Gastric mucosa; Stimulation; Biology; Oxidative stress; Molecular biology; Endocrinology; Chemistry; Internal medicine; Cell biology; Immunology; Medicine; Stomach; Biochemistry","score_opus":0.018427069258714245,"score_gpt":0.26783163763564494,"score_spread":0.2494045683769307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150587815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99489146,0.0031902676,0.0000034575705,0.0004704504,0.0011352386,0.00023358902,0.000020382593,0.000014716932,0.000040430692],"genre_scores_gemma":[0.9984693,0.001020816,0.000039581355,0.0002387058,0.0001375099,0.0000036389374,0.0000070552833,0.00002521945,0.00005815735],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868375,0.00021161724,0.0005436895,0.0002079132,0.000077465,0.00027553854],"domain_scores_gemma":[0.9990659,0.00006378621,0.00061951653,0.00008956445,0.0001212117,0.00004004079],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015521934,0.00025335193,0.0004431575,0.00016794803,0.00022798068,0.000018973826,0.00014367292,0.00021685314,0.00013665612],"category_scores_gemma":[0.000008231326,0.00021538693,0.00010705434,0.00010465162,0.00021681233,0.00034684854,0.000055979275,0.00048260478,0.0000076428105],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036308726,0.0004519672,0.000043076336,0.00001118119,0.00045581692,0.000007431602,0.0037601278,0.000002410697,0.99031734,0.000031264102,0.000085048465,0.0012034451],"study_design_scores_gemma":[0.0035016644,0.0018139676,0.0010140162,0.000018420142,0.00013440687,0.00043150957,0.0025546358,0.0000020372909,0.9851454,0.000041146952,0.0051561277,0.00018666992],"about_ca_topic_score_codex":0.000017441951,"about_ca_topic_score_gemma":3.868129e-7,"teacher_disagreement_score":0.0051719607,"about_ca_system_score_codex":0.00015615537,"about_ca_system_score_gemma":0.00009455684,"threshold_uncertainty_score":0.8783224},"labels":[],"label_agreement":null},{"id":"W2150669224","doi":"10.1186/cc12854","title":"Effects of ventilation strategy on distribution of lung inflammatory cell activity","year":2013,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Heart, Lung, and Blood Institute; Société de Pneumologie de Langue Française","keywords":"Medicine; Mechanical ventilation; Lung; Anesthesia; Ventilation (architecture); Perfusion; Fraction of inspired oxygen; Arterial blood; Pharmacology; Cardiology; Internal medicine","score_opus":0.005417557267926602,"score_gpt":0.24318033092063654,"score_spread":0.23776277365270992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150669224","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976827,0.0008740989,0.00046476122,0.000027347902,0.00017495934,0.0002205588,0.000011671585,0.000016053338,0.00052787963],"genre_scores_gemma":[0.999785,0.000006846043,0.0000033919823,0.0000050114795,0.000010480858,0.000012586931,0.00011667718,0.000004930794,0.00005509649],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99939704,0.0001677737,0.00017204741,0.00009748659,0.000034438064,0.00013123102],"domain_scores_gemma":[0.99930805,0.00030445025,0.000057247067,0.00012207041,0.00019727882,0.00001090472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000056786826,0.00007607639,0.00014191627,0.0000367102,0.000046046272,0.000004719202,0.00005536182,0.00016762459,0.00009873865],"category_scores_gemma":[0.00019494352,0.00007059431,0.00006483428,0.000047424946,0.00012331105,0.000118091,0.000019180627,0.00012411493,0.000096692565],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016919358,0.000060792747,0.00028060726,0.00078278244,0.000011069688,7.869039e-7,0.00015994313,0.000003988066,0.988574,0.0017543484,0.00020603517,0.007996454],"study_design_scores_gemma":[0.00032769074,0.00020787517,0.14115714,0.000059551614,0.000028327648,6.721402e-7,0.00012105746,0.000013497021,0.8578246,0.00008859087,0.00011627977,0.000054679374],"about_ca_topic_score_codex":0.000024428464,"about_ca_topic_score_gemma":4.680552e-7,"teacher_disagreement_score":0.14087653,"about_ca_system_score_codex":0.000034575605,"about_ca_system_score_gemma":0.000032425985,"threshold_uncertainty_score":0.28787524},"labels":[],"label_agreement":null},{"id":"W2150944106","doi":"10.1084/jem.20111171","title":"Synthetic double-stranded RNA induces innate immune responses similar to a live viral vaccine in humans","year":2011,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":269,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"National Center for Research Resources; Bill and Melinda Gates Foundation; National Institute of Allergy and Infectious Diseases; National Institutes of Health; Génome Québec; Foundation for the National Institutes of Health","keywords":"Innate immune system; Immune system; Pattern recognition receptor; Biology; Inflammasome; NOD1; Immunopotentiator; Interferon; Adjuvant; TLR3; Immunology; Agonist; Receptor; Immunity; Acquired immune system; Toll-like receptor; NOD2; Inflammation; Biochemistry","score_opus":0.03613078098885543,"score_gpt":0.2954756710512649,"score_spread":0.25934489006240946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150944106","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851637,0.01152659,0.000013826223,0.0014758339,0.00063130184,0.0002779762,9.1285943e-7,0.0000112380385,0.00089862046],"genre_scores_gemma":[0.99891543,0.00027909316,0.000029988463,0.00025008776,0.00007327901,0.000008653452,0.0000024609046,0.000015548949,0.00042543552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99814385,0.00054233964,0.0008344177,0.000112363625,0.000094767885,0.00027226596],"domain_scores_gemma":[0.99906594,0.0002059267,0.00035628706,0.00025272305,0.000084813975,0.000034312583],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0015915454,0.00019386152,0.00045546415,0.00038224884,0.00012531411,0.000004536719,0.00041381977,0.000115079114,0.0013727425],"category_scores_gemma":[0.00014151666,0.00011338933,0.00007493546,0.00016911824,0.00017033343,0.0001721936,0.00007368503,0.00042673777,0.00010079041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.023771355,0.00017229134,0.00004244038,0.0000040158575,0.000112185655,0.000036194433,0.04401172,0.0000018115311,0.93111306,0.00010342629,0.00022166081,0.00040981],"study_design_scores_gemma":[0.006216769,0.0032139078,0.005826023,0.0003458423,0.0000621953,0.0002801997,0.014271952,4.5279825e-7,0.9690345,0.0000995894,0.00052805635,0.000120545934],"about_ca_topic_score_codex":0.00027415616,"about_ca_topic_score_gemma":0.0000091388565,"teacher_disagreement_score":0.037921377,"about_ca_system_score_codex":0.00007695302,"about_ca_system_score_gemma":0.00005220789,"threshold_uncertainty_score":0.99954015},"labels":[],"label_agreement":null},{"id":"W2150951503","doi":"10.1139/y06-076","title":"hPepT1 selectively transports muramyl dipeptide but not Nod1-activating muramyl peptides","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":89,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Novartis Foundation","keywords":"Muramyl dipeptide; NOD2; NOD1; Peptidoglycan; Chemistry; Cytosol; Cell biology; Biology; Biochemistry; Biophysics; Receptor; Innate immune system; In vitro","score_opus":0.008504585217512585,"score_gpt":0.22420763287755915,"score_spread":0.21570304766004658,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2150951503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951289,0.0018375888,0.000070543596,0.00088547706,0.0013292014,0.0001616122,0.000026561154,0.000016629905,0.00054342777],"genre_scores_gemma":[0.99800134,0.000088005174,0.000076540506,0.000659858,0.000323259,0.000009169052,0.00005163673,0.000021857773,0.00076832296],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979764,0.00046744078,0.00064223557,0.000248142,0.000031928226,0.0006338246],"domain_scores_gemma":[0.99875957,0.00033840843,0.00045785907,0.000100761376,0.00022707031,0.00011630504],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003960829,0.00026124914,0.0005279513,0.00038742638,0.00046698085,0.000013810988,0.00022242079,0.00038574816,0.001966683],"category_scores_gemma":[0.000043066793,0.0002397847,0.0001524973,0.00015588026,0.0005688721,0.00026594196,0.000014194446,0.00074654625,0.000046584642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005558468,0.00003584706,0.0015687657,0.000033971715,0.00024498726,0.00008719984,0.00040375238,0.00010216579,0.9902866,0.00037979148,0.0044455538,0.0018555481],"study_design_scores_gemma":[0.0016263279,0.00036136972,0.087259814,0.00002358641,0.00010065351,0.0007055041,0.00014030382,0.000007639042,0.87252164,0.00062048406,0.03639398,0.00023872375],"about_ca_topic_score_codex":0.003622124,"about_ca_topic_score_gemma":0.0016034999,"teacher_disagreement_score":0.11776496,"about_ca_system_score_codex":0.00009750547,"about_ca_system_score_gemma":0.00069147395,"threshold_uncertainty_score":0.99894565},"labels":[],"label_agreement":null},{"id":"W2151072717","doi":"10.2147/rru.s58643","title":"IL-8 secretion in primary cultures of prostate cells is associated with prostate cancer aggressiveness","year":2014,"lang":"en","type":"article","venue":"Research and Reports in Urology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Prostate Cancer Canada; Canadian Urological Association","keywords":"Prostate cancer; Medicine; Prostate; Secretion; PCA3; Cancer research; Cancer; Carcinogenesis; Internal medicine","score_opus":0.010584093065802193,"score_gpt":0.28427286657072837,"score_spread":0.27368877350492615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151072717","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950302,0.0032407152,0.0000035221974,0.0005686293,0.00011307766,0.00044776456,0.000007925228,0.000011016836,0.0005771335],"genre_scores_gemma":[0.9966698,0.0014609211,0.000005126009,0.00006172248,0.000008820591,0.00009861373,0.00009636021,0.000010860521,0.0015877261],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978689,0.0008451278,0.00043371355,0.00031041732,0.000091135065,0.00045068425],"domain_scores_gemma":[0.9990591,0.00024774735,0.0002627384,0.00019182907,0.00021970684,0.000018894405],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019753692,0.00011432668,0.00032016542,0.0003345619,0.00008567222,0.000009066038,0.000072046154,0.00027994087,0.000050876086],"category_scores_gemma":[0.00023295014,0.00008297709,0.000020070187,0.000273078,0.0005397705,0.00009078531,0.00007664783,0.00048249163,0.0000033849956],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038809665,0.00027668022,0.22067013,0.00015050838,0.00010972443,0.00032199326,0.0034397172,0.0001342191,0.76126283,0.000094136165,0.000732688,0.0089264],"study_design_scores_gemma":[0.002988569,0.0019742826,0.55450714,0.00039694126,0.000017433353,0.00026604006,0.00025104254,0.000048823214,0.42045024,0.0017040257,0.017130064,0.00026538418],"about_ca_topic_score_codex":0.00044515246,"about_ca_topic_score_gemma":0.00025799236,"teacher_disagreement_score":0.3408126,"about_ca_system_score_codex":0.000060944458,"about_ca_system_score_gemma":0.00019567425,"threshold_uncertainty_score":0.33837074},"labels":[],"label_agreement":null},{"id":"W2151114733","doi":"10.4049/jimmunol.170.12.6141","title":"Overexpression of Toll-Like Receptor 4 Amplifies the Host Response to Lipopolysaccharide and Provides a Survival Advantage in Transgenic Mice","year":2003,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":92,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre; Montreal General Hospital","funders":"Canadian Institutes of Health Research","keywords":"TLR4; Biology; Innate immune system; Immune system; Transgene; Toll-like receptor; Microbiology; Receptor; Lipopolysaccharide; TLR2; Salmonella; Macrophage; Immunology; Gene; Bacteria; In vitro; Genetics","score_opus":0.009966859770406086,"score_gpt":0.24305718521995015,"score_spread":0.23309032544954406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151114733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9880907,0.0088139335,0.00011291052,0.0019708378,0.00068035047,0.00026456194,0.0000051682027,0.0000058301366,0.000055730983],"genre_scores_gemma":[0.9978551,0.0014373284,0.00005923765,0.00012419846,0.000014712177,0.0000058597475,0.0000011544133,0.000012448163,0.00048992474],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958326,0.0030431307,0.00068898115,0.000105438005,0.000058584304,0.00027127174],"domain_scores_gemma":[0.9975117,0.0016586831,0.00041898174,0.00028369055,0.0001135491,0.000013401172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0030262766,0.00015589307,0.00038226883,0.00023570516,0.00015032617,0.000009323441,0.00037956683,0.00017529618,0.00012344342],"category_scores_gemma":[0.0008449728,0.00008712823,0.00008779528,0.00015039934,0.0003287763,0.00015421674,0.00006337317,0.00049399695,0.000024511222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.017806947,0.00005679252,0.00023637779,0.000009470558,0.00014260152,0.0000012856971,0.0048554693,0.0000073777537,0.9753346,0.0003715898,0.00019339456,0.000984115],"study_design_scores_gemma":[0.0018865986,0.00094907,0.014125371,0.00016683234,0.00005048159,0.00047360157,0.008067761,4.38359e-7,0.95082974,0.00013235347,0.023199817,0.00011793266],"about_ca_topic_score_codex":0.000059228456,"about_ca_topic_score_gemma":0.000025671616,"teacher_disagreement_score":0.024504837,"about_ca_system_score_codex":0.000039351078,"about_ca_system_score_gemma":0.00015263444,"threshold_uncertainty_score":0.35529864},"labels":[],"label_agreement":null},{"id":"W2151127655","doi":"10.1158/0008-5472.can-10-2833","title":"LPS-Induced TLR4 Signaling in Human Colorectal Cancer Cells Increases β1 Integrin-Mediated Cell Adhesion and Liver Metastasis","year":2011,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":286,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Metastasis; TLR4; Medicine; Cancer research; Colorectal cancer; Cancer; Immunology; Receptor; Internal medicine","score_opus":0.08350852750680367,"score_gpt":0.34026465619218565,"score_spread":0.256756128685382,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151127655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908167,0.007933843,0.0000014414582,0.000037994083,0.0001573843,0.00043515553,0.000022537804,0.000032100776,0.0005628526],"genre_scores_gemma":[0.9969401,0.002181705,0.000013962736,0.000027083126,0.000036756916,0.00024284153,0.000041557494,0.000024269346,0.0004917343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976216,0.0010202746,0.00031733664,0.00036567185,0.00010245333,0.0005726918],"domain_scores_gemma":[0.9991027,0.00037315756,0.00008408945,0.00017976078,0.00021263024,0.00004764578],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010710591,0.00017470033,0.0002862333,0.000471636,0.00027877052,0.000024149054,0.0002416635,0.00026783918,0.0029400548],"category_scores_gemma":[0.00010682063,0.00015271346,0.00005176126,0.00037994896,0.0002478827,0.00018327875,0.00018665507,0.0007400283,0.00019891946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009292309,0.000119779594,0.0019274876,0.00005721846,0.00006085764,0.0000254397,0.0026228556,0.0000012479817,0.9902023,0.000035131972,0.0004433573,0.003575086],"study_design_scores_gemma":[0.0011284258,0.00031158142,0.007933819,0.00013604679,0.000021586578,0.0000038368935,0.0009322442,0.0000056990248,0.9882937,0.000028576993,0.0010319585,0.000172498],"about_ca_topic_score_codex":0.02813316,"about_ca_topic_score_gemma":0.0016035906,"teacher_disagreement_score":0.02652957,"about_ca_system_score_codex":0.00022241959,"about_ca_system_score_gemma":0.00023556947,"threshold_uncertainty_score":0.9979714},"labels":[],"label_agreement":null},{"id":"W2151375858","doi":"10.33549/physiolres.932054","title":"Experimental Endotoxemia Induces Leukocyte Adherence and Plasma Extravasation Within the Rat Pial Microcirculation","year":2011,"lang":"en","type":"article","venue":"Physiological Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Fakultní nemocnice Hradec Králové","keywords":"Extravasation; Microcirculation; Intravital microscopy; Vascular permeability; Blood–brain barrier; Sepsis; Lipopolysaccharide; Cytokine; Pathology; Medicine; Endothelium; Inflammation; Tumor necrosis factor alpha; Immunology; Internal medicine; Central nervous system","score_opus":0.20965364655140145,"score_gpt":0.360112921328865,"score_spread":0.15045927477746357,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151375858","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976759,0.0007694205,0.000013271689,0.00006129115,0.0001731116,0.00036705268,5.7784854e-7,0.00003285573,0.0009065145],"genre_scores_gemma":[0.9992955,0.000058752237,0.000041148687,0.000028652008,0.000043382257,0.00010319078,0.000032674507,0.0000065040754,0.00039022774],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99810463,0.000981623,0.00023214995,0.00027839807,0.00008802251,0.00031515292],"domain_scores_gemma":[0.9992796,0.0003360974,0.00007501115,0.00018983206,0.000098619545,0.000020846279],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090891565,0.000118524375,0.00014134526,0.000069452995,0.0005141865,0.000029589095,0.00023093449,0.00020879509,0.00046570666],"category_scores_gemma":[0.00029904774,0.0000713894,0.00004066404,0.00013905633,0.00064793613,0.0001666866,0.00016001044,0.0005250865,0.0003905183],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000716802,0.00006329165,0.000099859666,0.00000415191,0.00002121039,0.0000015201958,0.002076051,0.0000012295909,0.991911,0.0028570876,0.00028424093,0.0019635677],"study_design_scores_gemma":[0.0005007462,0.0005245634,0.02382819,0.000012895221,0.0000037865461,0.000015096335,0.0011880457,0.0000397986,0.9724631,0.00095774175,0.00037465233,0.00009141623],"about_ca_topic_score_codex":0.00014259522,"about_ca_topic_score_gemma":0.000003403433,"teacher_disagreement_score":0.02372833,"about_ca_system_score_codex":0.000045569665,"about_ca_system_score_gemma":0.00006137464,"threshold_uncertainty_score":0.5099161},"labels":[],"label_agreement":null},{"id":"W2151718282","doi":"10.1186/1742-2094-9-229","title":"Expression of myeloid differentiation factor 88 in neurons is not requisite for the induction of sickness behavior by interleukin-1β","year":2012,"lang":"en","type":"article","venue":"Journal of Neuroinflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Sickness behavior; Tumor necrosis factor alpha; Cytokine; Inflammation; Biology; Lipopolysaccharide; Interleukin; Immune system; Immunology; Microglia; Endocrinology; Nestin; Internal medicine; Medicine; Cell biology; Stem cell; Neural stem cell","score_opus":0.02368092127552158,"score_gpt":0.2660093889084792,"score_spread":0.24232846763295762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2151718282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99691707,0.0003797981,0.001010505,0.0003240136,0.0009753432,0.00036408976,0.000016081825,0.000005540375,0.0000075575213],"genre_scores_gemma":[0.9996168,0.00012263298,0.00003279916,0.000012734956,0.00007363249,0.000013767305,0.000027535134,0.0000133672065,0.0000867262],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840987,0.0002782218,0.00095154636,0.00008625175,0.0001025598,0.00017154067],"domain_scores_gemma":[0.9978567,0.00033418924,0.001384232,0.00017827522,0.00023204465,0.000014566645],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043478626,0.00012451744,0.00026892227,0.00025704075,0.000069089416,0.000009949283,0.0001689877,0.0001481769,0.00007628324],"category_scores_gemma":[0.00023014317,0.00008935538,0.00014617256,0.0001234048,0.000057036646,0.0007193067,0.000032201162,0.00025217558,0.0000047119966],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087120396,0.00012573604,0.0023311267,0.00003874763,0.00002188343,2.1953807e-7,0.0019255911,0.00001861364,0.9791589,0.000033655,0.00029468135,0.01517968],"study_design_scores_gemma":[0.00097937,0.00024330414,0.17430621,0.0000706795,0.000060619917,0.000032718646,0.00020139327,0.000026770045,0.82318944,0.000013582114,0.0008151202,0.000060799688],"about_ca_topic_score_codex":0.000009331899,"about_ca_topic_score_gemma":0.0000016738987,"teacher_disagreement_score":0.17197509,"about_ca_system_score_codex":0.000040639356,"about_ca_system_score_gemma":0.000032348693,"threshold_uncertainty_score":0.36438066},"labels":[],"label_agreement":null},{"id":"W2152098692","doi":"10.1002/ddr.1140","title":"Suppressive effects of adenosine on the 5‐lipoxygenase pathway in human polymorphonuclear leukocytes","year":2001,"lang":"en","type":"article","venue":"Drug Development Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"","keywords":"Adenosine; Arachidonic acid; Leukotriene; Arachidonate 5-lipoxygenase; Leukotriene B4; Chemistry; Biochemistry; Biosynthesis; Lipid signaling; Adenosine receptor; Pharmacology; Biology; Agonist; Receptor; Inflammation; Enzyme; Immunology","score_opus":0.0280855612135569,"score_gpt":0.29210777566194585,"score_spread":0.26402221444838897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152098692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99534553,0.0012470305,0.0000026704706,0.0009399065,0.000105156876,0.00051228865,8.481052e-7,0.000019768542,0.0018267848],"genre_scores_gemma":[0.9915389,0.00010009149,0.000011855287,0.00005227313,0.000015893807,0.000095766234,0.00004920241,0.000015684294,0.008120366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99772483,0.0010144253,0.00035236578,0.00023358637,0.0001666034,0.00050820154],"domain_scores_gemma":[0.99837685,0.0010758431,0.00007513148,0.00032576727,0.0001279894,0.000018419247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015478241,0.00014022972,0.00020491812,0.00043190512,0.00037338925,0.00001904836,0.00039266984,0.00012409054,0.0006315748],"category_scores_gemma":[0.0004003227,0.00009565076,0.000042878255,0.000431592,0.00030617317,0.00007406435,0.00017897501,0.0005505763,0.00075262337],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006299019,0.0002230311,0.0007722559,0.000042155727,0.000061028164,0.000059182574,0.0043155574,0.000002840749,0.9793059,0.002466492,0.0059745186,0.006147109],"study_design_scores_gemma":[0.0008716161,0.00010281426,0.028825518,0.0001814739,0.0000014027281,0.000008412903,0.0005149611,0.0000012512717,0.9212454,0.00007723571,0.04806804,0.00010186279],"about_ca_topic_score_codex":0.00012953386,"about_ca_topic_score_gemma":0.00003154259,"teacher_disagreement_score":0.058060516,"about_ca_system_score_codex":0.00012319721,"about_ca_system_score_gemma":0.00021440146,"threshold_uncertainty_score":0.96737015},"labels":[],"label_agreement":null},{"id":"W2152592401","doi":"10.1186/cc5178","title":"Dose effects of recombinant human IL-11 on the systemic hemodynamic function in hemorrhagic shock","year":2007,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Bayer Canada","keywords":"Medicine; Hemorrhagic shock; Recombinant DNA; Resuscitation; Shock (circulatory); Pharmacology; Hemodynamics; Systemic administration; Intensive care medicine; Anesthesia; Internal medicine; In vivo","score_opus":0.009262637121197183,"score_gpt":0.25957448549187956,"score_spread":0.2503118483706824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152592401","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995556,0.0017714866,0.0001595575,0.00019400496,0.0011003406,0.00030064423,0.0000017880344,0.000028992075,0.0008871645],"genre_scores_gemma":[0.9995766,0.0000059057566,0.0000028251122,0.00010125952,0.000018783174,0.00001929343,0.00004421493,0.000010989939,0.0002201095],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989063,0.00028670707,0.0003189049,0.00016838555,0.000041725278,0.00027798917],"domain_scores_gemma":[0.99872583,0.0008647455,0.000041680436,0.00026340355,0.00009199355,0.000012339088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039806953,0.00011990725,0.00020380667,0.00012069744,0.0001289345,0.0000069902785,0.00012258267,0.00021650559,0.000063741245],"category_scores_gemma":[0.00040874706,0.00008575973,0.00007788134,0.00012401586,0.0001428391,0.000047880967,0.000032608656,0.00026607126,0.00013823766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004898027,0.00011168651,0.0010985663,0.00064869877,0.000016634702,0.000031084255,0.00082293345,0.000002688055,0.938862,0.052803203,0.00015350111,0.004959187],"study_design_scores_gemma":[0.0030709011,0.0019894794,0.09401928,0.001219421,0.00012681932,0.00014155608,0.0072179767,0.000026235553,0.8884497,0.0019530087,0.0013782701,0.00040733474],"about_ca_topic_score_codex":0.000043935415,"about_ca_topic_score_gemma":0.00003886115,"teacher_disagreement_score":0.09292071,"about_ca_system_score_codex":0.00010619478,"about_ca_system_score_gemma":0.000022775213,"threshold_uncertainty_score":0.34971803},"labels":[],"label_agreement":null},{"id":"W2152651181","doi":"10.4049/jimmunol.178.7.4373","title":"Bcl10 Controls TCR- and FcγR-Induced Actin Polymerization","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research","funders":"Deutsche Krebshilfe; Schweizerische Akademie der Medizinischen Wissenschaften; Centre National de la Recherche Scientifique; Studienstiftung des Deutschen Volkes; Deutsche Forschungsgemeinschaft; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Cell biology; Phosphorylation; BCL10; Ionomycin; Biology; T-cell receptor; Actin; Jurkat cells; Chemistry; T cell; Immune system; Biochemistry; Immunology; Intracellular","score_opus":0.008898193397320507,"score_gpt":0.23876485689921864,"score_spread":0.22986666350189813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2152651181","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98637944,0.009506349,0.0012078417,0.0013528496,0.0008774881,0.00010915269,8.100457e-7,0.0000134872,0.0005525906],"genre_scores_gemma":[0.99850005,0.00069996173,0.00003233125,0.00018665184,0.00006339115,7.033546e-7,0.000003984306,0.000010427821,0.00050247356],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99861604,0.00046046163,0.00054887356,0.000066694665,0.000036223228,0.00027171234],"domain_scores_gemma":[0.99852127,0.0005917347,0.0005621047,0.0001761144,0.00013638336,0.000012376463],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016763847,0.000120101045,0.0002729382,0.00019531374,0.00019669473,0.0000099119625,0.00022143034,0.00022848225,0.0001332629],"category_scores_gemma":[0.00027719958,0.000077988494,0.000063000785,0.00011166094,0.0002004484,0.0001687542,0.00004969192,0.00046085552,0.00007298406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025393106,0.000029416859,0.0001363292,0.0000020133493,0.00026132577,0.000005242165,0.0007912731,7.7464944e-7,0.95932835,0.0005106642,0.00009912638,0.036296196],"study_design_scores_gemma":[0.0022267965,0.0007847305,0.027293164,0.000023941733,0.000093708004,0.0022920282,0.0012139729,0.0000017316356,0.95079803,0.00014777387,0.01502368,0.00010044141],"about_ca_topic_score_codex":0.000030005718,"about_ca_topic_score_gemma":0.000007412999,"teacher_disagreement_score":0.036195755,"about_ca_system_score_codex":0.000030306439,"about_ca_system_score_gemma":0.00006340298,"threshold_uncertainty_score":0.31802782},"labels":[],"label_agreement":null},{"id":"W2153134282","doi":"10.1093/infdis/jit807","title":"Toll-like Receptor Polymorphism Associations With HIV-1 Outcomes Among Sub-Saharan Africans","year":2013,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Allergy and Infectious Diseases; National Cancer Institute; National Human Genome Research Institute; National Institute of Mental Health; National Heart, Lung, and Blood Institute; Center for AIDS Research, University of Washington; National Institute on Drug Abuse; U.S. Public Health Service; National Institutes of Health; University of Cape Town; National Institute on Aging; University of Washington; Harvard University; Bill and Melinda Gates Foundation","keywords":"Single-nucleotide polymorphism; Haplotype; Immunology; Odds ratio; TLR9; Toll-like receptor; Medicine; TLR2; Biology; Genotype; Internal medicine; Genetics; Immune system; Gene; TLR4; Innate immune system; Gene expression","score_opus":0.0049980444268282595,"score_gpt":0.20057897707446443,"score_spread":0.19558093264763618,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153134282","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958294,0.0017679308,0.00014801713,0.0010678278,0.0004740049,0.00021584964,0.000022006416,0.00004360218,0.0004313726],"genre_scores_gemma":[0.9980452,0.00031090583,0.0000047364906,0.00019172426,0.000059112703,0.000014733685,0.000023084853,0.00001605303,0.0013344449],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987722,0.000440935,0.00039683748,0.00007161622,0.0000812232,0.00023719438],"domain_scores_gemma":[0.99851334,0.0004433132,0.00055355066,0.00019279888,0.0002579248,0.000039071172],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002497417,0.00015384832,0.00029252126,0.00015980123,0.00034213223,0.000039319082,0.00019832255,0.000089194764,0.0007281134],"category_scores_gemma":[0.00019864418,0.000086063,0.0001616502,0.000154058,0.00018599983,0.0004012055,0.000027188375,0.00026530764,0.000524118],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043129898,0.0004614157,0.8332669,0.00001123662,0.0016539473,0.000006126863,0.0011727742,0.00011802309,0.0803059,0.00009969993,0.08015151,0.0023211595],"study_design_scores_gemma":[0.0018421462,0.00041394954,0.9835974,0.000049594295,0.00041014768,0.00014573688,0.00035844237,0.0000023197454,0.009190886,0.00015943153,0.0036481665,0.00018180623],"about_ca_topic_score_codex":0.00019677814,"about_ca_topic_score_gemma":0.000031446274,"teacher_disagreement_score":0.15033047,"about_ca_system_score_codex":0.00009358873,"about_ca_system_score_gemma":0.00012206394,"threshold_uncertainty_score":0.7972331},"labels":[],"label_agreement":null},{"id":"W2153252006","doi":"10.4049/jimmunol.180.12.8020","title":"CD45 Regulates TLR-Induced Proinflammatory Cytokine and IFN-β Secretion in Dendritic Cells","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"University of British Columbia","keywords":"Proinflammatory cytokine; Protein tyrosine phosphatase; Secretion; Cell biology; TLR2; Cytokine; TLR4; Dendritic cell; Biology; Chemistry; Immunology; Signal transduction; Immune system; Inflammation; Endocrinology","score_opus":0.010564126457522994,"score_gpt":0.2106386092193551,"score_spread":0.2000744827618321,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153252006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9905936,0.00788502,0.000030704694,0.0006248994,0.00055974803,0.00016106799,8.395698e-7,0.000013697872,0.00013038568],"genre_scores_gemma":[0.99687207,0.00256315,0.000025027975,0.000052630556,0.000039565,0.0000029944547,0.00000462303,0.000013311217,0.0004266459],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809253,0.0008162509,0.00065913604,0.00009757315,0.000045130233,0.00028935832],"domain_scores_gemma":[0.9989016,0.0003163429,0.00041980005,0.0002210251,0.00012871705,0.00001249174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009412197,0.00015376811,0.0003528562,0.00029585394,0.00019222725,0.000005874553,0.00024829464,0.0002207009,0.00009641594],"category_scores_gemma":[0.00013752596,0.00010756064,0.00006792377,0.00012159073,0.0003540046,0.00021005611,0.000072019495,0.0006102571,0.000086126085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011511529,0.00004459726,0.00038487345,0.000008569622,0.00012398482,0.00005437067,0.0014822719,0.00000826003,0.9945893,0.00012842448,0.0002351176,0.0017890378],"study_design_scores_gemma":[0.002116183,0.0006160704,0.056743868,0.0000765223,0.000044728895,0.0090567,0.00048656305,0.000008622998,0.9282093,0.00031426514,0.002198288,0.00012887534],"about_ca_topic_score_codex":0.000038744925,"about_ca_topic_score_gemma":0.0000100440575,"teacher_disagreement_score":0.066380024,"about_ca_system_score_codex":0.00006135911,"about_ca_system_score_gemma":0.0001255804,"threshold_uncertainty_score":0.43861955},"labels":[],"label_agreement":null},{"id":"W2153348025","doi":"10.1128/iai.01364-09","title":"Modulation of the Local Neutrophil Response by a Novel Hyaluronic Acid-Binding Peptide Reduces Bacterial Burden during Staphylococcal Wound Infection","year":2010,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"CXCL1; Staphylococcus aureus; Microbiology; TLR2; Chemokine; Antibiotics; Antimicrobial peptides; Biology; Immunology; Innate immune system; Immune system; Sepsis; Antimicrobial; Staphylococcal infections; Medicine; Bacteria","score_opus":0.007304106215447782,"score_gpt":0.22301250538337253,"score_spread":0.21570839916792475,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153348025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99764454,0.00005760914,0.00017088393,0.00015330083,0.0015260758,0.00028078246,0.000014095521,0.00006026499,0.000092460155],"genre_scores_gemma":[0.99927604,0.000050611336,0.000006178995,0.0000074598147,0.000058859227,0.000019801542,0.000060263512,0.000015254472,0.00050551665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985519,0.0005933223,0.00038385822,0.00018749917,0.000054308133,0.00022909444],"domain_scores_gemma":[0.9991681,0.0001197804,0.0002746248,0.0003077641,0.00011011744,0.000019608106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070315937,0.00017901351,0.00019938753,0.00017092215,0.0007033102,0.000044344746,0.000101435486,0.00033713452,0.00018026459],"category_scores_gemma":[0.00028020225,0.00014903644,0.00010720392,0.000222508,0.0003659384,0.0003654724,0.00011950054,0.0007376609,0.000026374008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017623438,0.00008174327,0.003312248,0.000016842967,0.000061309576,8.4835726e-8,0.00047137093,0.00004117627,0.9919488,0.000044989694,0.000044892284,0.0022142387],"study_design_scores_gemma":[0.0010787344,0.0001393313,0.39118844,0.000023656406,0.00002015106,0.0000546915,0.000055452507,0.000046769586,0.6032077,0.000015919286,0.0040614665,0.00010770215],"about_ca_topic_score_codex":0.0015984809,"about_ca_topic_score_gemma":0.0001292946,"teacher_disagreement_score":0.38874108,"about_ca_system_score_codex":0.00007846676,"about_ca_system_score_gemma":0.00008231918,"threshold_uncertainty_score":0.6077529},"labels":[],"label_agreement":null},{"id":"W2153867600","doi":"10.1097/01.asn.0000094084.18567.cc","title":"Differential Usage of Class II Transactivator Promoters PI and PIV during Inflammation and Injury in Kidney","year":2003,"lang":"en","type":"article","venue":"Journal of the American Society of Nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"CIITA; Promoter; Transactivation; Biology; Molecular biology; IRF1; Kidney; Interferon gamma; Transcription factor; Gene expression; Immunology; Cytokine; Endocrinology; MHC class II; T cell; Gene; Immune system; Genetics","score_opus":0.005357077352299221,"score_gpt":0.21755358279000003,"score_spread":0.2121965054377008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153867600","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980177,0.00017343927,0.00009936684,0.0015158165,0.000078558434,0.00009875457,0.0000029077664,0.0000021997218,0.000011214711],"genre_scores_gemma":[0.99921876,0.00039417215,0.00015046496,0.0001713723,0.000014757813,0.0000013383238,7.0771557e-7,0.0000060394555,0.000042384523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99886674,0.00040770636,0.00045870862,0.000080766644,0.000041744755,0.00014433687],"domain_scores_gemma":[0.9989285,0.00007483587,0.0008245555,0.000102984544,0.00005190812,0.000017203014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029942222,0.00009517465,0.0003801751,0.00007476339,0.00008272446,0.0000027334663,0.00010468552,0.00010190559,0.000026269945],"category_scores_gemma":[0.0000639368,0.00006965892,0.00013279238,0.00012280466,0.0007032591,0.00011181767,0.00003454898,0.00027943208,2.159588e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008273347,0.000044430657,0.002752796,0.000039618626,0.0001810084,3.6279656e-7,0.0023354902,0.0000033819372,0.9912634,0.00003010908,0.0001531331,0.0023689268],"study_design_scores_gemma":[0.0019012733,0.0007549264,0.22366907,0.000069558504,0.00006360148,0.00015789647,0.00069565827,0.000012672361,0.76910776,0.00011011562,0.0033767277,0.000080724756],"about_ca_topic_score_codex":0.00002532671,"about_ca_topic_score_gemma":0.0000015152772,"teacher_disagreement_score":0.22215563,"about_ca_system_score_codex":0.000026083937,"about_ca_system_score_gemma":0.00007791145,"threshold_uncertainty_score":0.28406084},"labels":[],"label_agreement":null},{"id":"W2153891358","doi":"10.1093/intimm/dxs074","title":"TAK1 contributes to the enhanced responsiveness of LTB4-treated neutrophils to Toll-like receptor ligands","year":2012,"lang":"en","type":"article","venue":"International Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval; McGill University Health Centre; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research","keywords":"TLR2; Cell biology; p38 mitogen-activated protein kinases; TLR4; Proinflammatory cytokine; Receptor; Innate immune system; Toll-like receptor; Secretion; TLR9; Chemistry; Biology; Kinase; Signal transduction; Inflammation; Immune system; Immunology; MAPK/ERK pathway; Biochemistry; Gene expression","score_opus":0.008945662377642744,"score_gpt":0.2559787246608012,"score_spread":0.24703306228315844,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153891358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9820958,0.0021460406,0.0010042555,0.008535683,0.0048062713,0.0004551321,0.000047570586,0.0000501293,0.0008591133],"genre_scores_gemma":[0.99329704,0.00010494396,0.00004001767,0.00092250766,0.0000966062,0.00014513198,0.00017275725,0.00001772555,0.005203293],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847215,0.0002996274,0.00051609933,0.00021718176,0.00006233377,0.00043261895],"domain_scores_gemma":[0.9984783,0.00045979128,0.00018592516,0.00039828787,0.0004531806,0.000024534575],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00051135034,0.00019091279,0.00032416554,0.00036874818,0.00014166956,0.00001605151,0.00062332524,0.00025218923,0.0006388696],"category_scores_gemma":[0.0006072399,0.00014606987,0.000110234425,0.00028505822,0.00014951205,0.00016493835,0.00019233701,0.00022213333,0.0023915838],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037030184,0.00010820866,0.0007883868,0.000002569355,0.00057947804,7.821e-7,0.0008738561,0.0000243967,0.9805783,0.0043364824,0.0053586387,0.0036458974],"study_design_scores_gemma":[0.0006663851,0.00020460103,0.023845416,0.00003430916,0.000020227222,0.000023697403,0.00019797785,4.934927e-7,0.711127,0.000033264878,0.263739,0.00010768498],"about_ca_topic_score_codex":0.00010752345,"about_ca_topic_score_gemma":0.000010992077,"teacher_disagreement_score":0.26945132,"about_ca_system_score_codex":0.00011804719,"about_ca_system_score_gemma":0.0000619948,"threshold_uncertainty_score":0.9983852},"labels":[],"label_agreement":null},{"id":"W2153913370","doi":"10.1128/cvi.00734-13","title":"Topical CpG Adjuvantation of a Protein-Based Vaccine Induces Protective Immunity to Listeria monocytogenes","year":2014,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Immune system; Antigen; Immunology; Epitope; TLR9; Cytotoxic T cell; CD8; Medicine; Ovalbumin; T cell; Biology","score_opus":0.03250151658373545,"score_gpt":0.3227479287900288,"score_spread":0.2902464122062933,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153913370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9932987,0.00076720765,0.0023187862,0.002204059,0.00045313686,0.00078519154,0.000005174924,0.000060089616,0.000107672946],"genre_scores_gemma":[0.99880695,0.00004870836,0.00029068795,0.0002794927,0.00007210111,0.00018336778,0.00005147768,0.000015941196,0.00025125907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99705416,0.0012426128,0.0009894789,0.00037322007,0.0000331435,0.00030739498],"domain_scores_gemma":[0.99838966,0.0005859263,0.0003236672,0.00044597822,0.00021992341,0.00003482552],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00090383145,0.0002286378,0.0006972018,0.00018752116,0.00016201405,0.000011851199,0.00026082274,0.0004457482,0.00019832954],"category_scores_gemma":[0.001410935,0.00018645836,0.00012949684,0.0001871742,0.00012963288,0.000096897726,0.0001847999,0.0004509429,0.00012063159],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006257995,0.00029414773,0.005923388,0.000050378218,0.00020933535,0.0000011066445,0.00017567562,0.000003600928,0.85850596,0.0013552641,0.00010292891,0.12712018],"study_design_scores_gemma":[0.0049070725,0.0040188786,0.46251553,0.00009951889,0.000059044032,0.000020118341,0.0001038666,0.00003010993,0.5168979,0.0008653765,0.01023489,0.0002476611],"about_ca_topic_score_codex":0.00017218791,"about_ca_topic_score_gemma":0.000032960776,"teacher_disagreement_score":0.45659214,"about_ca_system_score_codex":0.000015474332,"about_ca_system_score_gemma":0.00007680179,"threshold_uncertainty_score":0.7603551},"labels":[],"label_agreement":null},{"id":"W2153917975","doi":"10.4049/jimmunol.175.11.7594","title":"Viral Inhibition of IL-1- and Neutrophil Elastase-Induced Inflammatory Responses in Bronchial Epithelial Cells","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Neutrophil elastase; Elastase; Immunology; Interleukin 8; Interleukin 22; Inflammation; Medicine; Chemistry; Interleukin; Cytokine; Enzyme; Biochemistry","score_opus":0.007674648315379383,"score_gpt":0.22034189470030743,"score_spread":0.21266724638492804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2153917975","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951055,0.0032369005,0.000026263646,0.0009369981,0.00048525105,0.00013431757,0.000009009323,0.000007800705,0.00005792771],"genre_scores_gemma":[0.9986116,0.0010490193,0.000035915273,0.00006796845,0.0000939094,0.0000019230324,0.0000038682433,0.000012091568,0.00012369802],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997398,0.0013215229,0.0008780625,0.00008985725,0.000051982413,0.0002605515],"domain_scores_gemma":[0.99855226,0.0004473966,0.0006680088,0.00020049646,0.0001201231,0.000011729425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013408501,0.00015391449,0.00037459703,0.00039586122,0.00009826271,0.0000060496636,0.00020003109,0.00025939228,0.0000766264],"category_scores_gemma":[0.00015292519,0.000110961766,0.00008788828,0.00010347208,0.000366761,0.00025722568,0.00008743537,0.00061617274,0.000050855717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008051251,0.00007973782,0.00009115671,0.0000075737403,0.000112593334,0.000009076738,0.0014908151,0.000041482926,0.980581,0.00036878473,0.00010152095,0.009065033],"study_design_scores_gemma":[0.0032000747,0.0010482928,0.021044482,0.000054353233,0.00004995988,0.00063335005,0.00048074327,0.000004037751,0.9686794,0.00022867584,0.00447129,0.00010533606],"about_ca_topic_score_codex":0.00003814899,"about_ca_topic_score_gemma":0.000023339484,"teacher_disagreement_score":0.020953324,"about_ca_system_score_codex":0.00006323123,"about_ca_system_score_gemma":0.00015958911,"threshold_uncertainty_score":0.45248896},"labels":[],"label_agreement":null},{"id":"W2154126938","doi":"10.4049/jimmunol.1001912","title":"CD8 T Cell-Intrinsic GITR Is Required for T Cell Clonal Expansion and Mouse Survival following Severe Influenza Infection","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"CD8; T cell; Cytotoxic T cell; Biology; Immune system; Immunology; Cell biology; In vitro; Genetics","score_opus":0.012146418362958855,"score_gpt":0.24474795182699863,"score_spread":0.23260153346403978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154126938","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926272,0.0031006094,0.00032034598,0.00041679927,0.003085167,0.00024125258,0.0000050311924,0.000021797592,0.00018181933],"genre_scores_gemma":[0.99799395,0.0007535125,0.000116358024,0.00018664688,0.000109450484,0.00000604214,0.000010522157,0.000022974198,0.0008005484],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984108,0.00043700245,0.0006293685,0.00013346742,0.00005650463,0.00033282954],"domain_scores_gemma":[0.9982125,0.0006882312,0.0005819308,0.00028331572,0.00021480698,0.000019199912],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013411408,0.00019692596,0.0003809146,0.00021156447,0.00045048303,0.000022349137,0.0002501886,0.00042151753,0.00010405898],"category_scores_gemma":[0.00023276535,0.00014044474,0.0002116806,0.000103762046,0.00020054544,0.00032607774,0.00010128169,0.00079242716,0.00005997422],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024640895,0.00007711623,0.0008483873,0.000018667159,0.00021472239,0.00000246718,0.00115374,0.000005100517,0.9905218,0.00008821266,0.00065327354,0.003952456],"study_design_scores_gemma":[0.0047769947,0.0010095227,0.006864709,0.000027275584,0.00019108463,0.00050141086,0.0004378639,0.0000047874546,0.9501665,0.00029595208,0.03552655,0.000197325],"about_ca_topic_score_codex":0.000075062955,"about_ca_topic_score_gemma":0.00002624572,"teacher_disagreement_score":0.040355247,"about_ca_system_score_codex":0.000033413686,"about_ca_system_score_gemma":0.00013680581,"threshold_uncertainty_score":0.572717},"labels":[],"label_agreement":null},{"id":"W2154165492","doi":"10.1136/mp.55.2.110","title":"CD40 activation in epithelial ovarian carcinoma cells modulates growth, apoptosis, and cytokine secretion","year":2002,"lang":"en","type":"article","venue":"Molecular Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; British Medical Association; McMaster University","keywords":"Biology; Cytokine; Cancer research; CD40; Molecular biology; Apoptosis; Cell culture; Cell growth; Cell biology; Immunology; Cytotoxic T cell; In vitro","score_opus":0.0064614522616035855,"score_gpt":0.18704146480484501,"score_spread":0.18058001254324144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154165492","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955214,0.00052760093,0.0023572687,0.0006126777,0.00023188796,0.00022345595,0.0000055009523,0.000039116112,0.00048108588],"genre_scores_gemma":[0.99917644,0.000104150546,0.00014036242,0.00021035383,0.00001873717,0.000030083542,0.000111443595,0.000017765688,0.00019064925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862045,0.00047584943,0.00027904863,0.00030151955,0.000029449739,0.00029370192],"domain_scores_gemma":[0.9995897,0.000051943876,0.00009583267,0.00020103207,0.000046860096,0.000014675778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00021843675,0.00016509664,0.00022633144,0.00025214878,0.0000865698,0.000011703445,0.00009099895,0.00036333577,0.00013833813],"category_scores_gemma":[0.00007744072,0.00016826754,0.000047812096,0.00014800344,0.000117848285,0.00011392624,0.00005530784,0.00023476184,0.00015137471],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010225675,0.00012486747,0.00040592504,0.000011926617,0.000016754917,0.000027259732,0.0005686165,0.0000072399894,0.9948531,0.0012590846,0.00006252578,0.0025604602],"study_design_scores_gemma":[0.0026260826,0.00016806509,0.010050498,0.0000139516005,0.000016069886,0.00010011608,0.000048726666,0.00015042095,0.98554176,0.0005047614,0.0006094767,0.00017007194],"about_ca_topic_score_codex":0.00007301269,"about_ca_topic_score_gemma":0.0000028631034,"teacher_disagreement_score":0.009644574,"about_ca_system_score_codex":0.00003710035,"about_ca_system_score_gemma":0.000009674854,"threshold_uncertainty_score":0.6861751},"labels":[],"label_agreement":null},{"id":"W2154353399","doi":"10.1186/1471-2466-10-57","title":"Mechanical ventilation modulates Toll-like receptor-3-induced lung inflammation via a MyD88-dependent, TLR4-independent pathway: a controlled animal study","year":2010,"lang":"en","type":"article","venue":"BMC Pulmonary Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"National Heart, Lung, and Blood Institute","keywords":"Medicine; TLR4; Toll-like receptor; Inflammation; Toll; Receptor; Lung; Immunology; Innate immune system; Internal medicine","score_opus":0.0138272377510604,"score_gpt":0.2565408840936781,"score_spread":0.2427136463426177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154353399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914854,0.00047152545,0.0012548247,0.00045409708,0.003171678,0.0024546054,0.0000053116246,0.00023004136,0.00047249623],"genre_scores_gemma":[0.9969954,0.000020591859,0.00006189975,0.000046657413,0.0005315033,0.0002839534,0.00042177085,0.000048330738,0.0015899171],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964546,0.0008397285,0.0012294714,0.00063594297,0.00029872093,0.0005415415],"domain_scores_gemma":[0.9980693,0.0003885755,0.00055357383,0.0006648562,0.0002461059,0.00007760436],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022212388,0.00044640453,0.0008428474,0.0004118734,0.00038520136,0.000027989969,0.00037213726,0.0005863113,0.001725656],"category_scores_gemma":[0.0005233047,0.00035975038,0.00018029757,0.00025489373,0.000107145956,0.00042826385,0.00014771037,0.0008928464,0.00049176463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009777076,0.0004428602,0.0028092193,0.000032874486,0.00024109319,0.000045663015,0.0007627464,0.0000075518246,0.9794925,0.00031578794,0.0001469577,0.0059257117],"study_design_scores_gemma":[0.053274274,0.005675709,0.13751142,0.0003100305,0.00093947555,0.0012180876,0.0037207415,0.010856283,0.7779531,0.000656763,0.0063282927,0.0015558447],"about_ca_topic_score_codex":0.000189116,"about_ca_topic_score_gemma":0.00019046215,"teacher_disagreement_score":0.20153938,"about_ca_system_score_codex":0.00010228873,"about_ca_system_score_gemma":0.00015416107,"threshold_uncertainty_score":0.99988544},"labels":[],"label_agreement":null},{"id":"W2154536286","doi":"10.1080/08830180600785868","title":"Immune Mechanisms and Therapeutic Potential of CpG Oligodeoxynucleotides","year":2006,"lang":"en","type":"review","venue":"International Reviews of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Toll-Like Receptor 9; CpG Oligodeoxynucleotide; Immune system; CpG site; Immunology; Biology; Toll-like receptor; TLR9; Immunotherapy; Receptor; Innate immune system; Cancer research; DNA methylation; Gene; Genetics; Gene expression","score_opus":0.022057046980197028,"score_gpt":0.29740127023481944,"score_spread":0.27534422325462243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2154536286","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00012815888,0.9961942,0.0005564758,0.000047047586,0.0014520593,0.0007197222,0.00005723408,0.000021788119,0.0008233107],"genre_scores_gemma":[0.00084372004,0.99711764,0.0002202051,0.000014464394,0.000032611206,0.0001247087,0.0004914051,0.00003999924,0.0011152221],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962031,0.0008155451,0.0022687349,0.00036132778,0.000075357355,0.00027589186],"domain_scores_gemma":[0.9968133,0.0002875574,0.002180719,0.0005050875,0.00020423814,0.000009111734],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007591209,0.00045601313,0.0027267686,0.00054431916,0.000059432376,0.000010406112,0.00076307316,0.00068295223,0.00085462607],"category_scores_gemma":[0.00020502035,0.00035921484,0.0008309039,0.00015537876,0.0004404818,0.00008778361,0.0002783356,0.00045387525,0.0002509019],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000078951096,0.00010294966,6.510596e-7,0.0023278892,0.0014282621,0.0000028513243,0.000021325894,5.162906e-7,0.03452667,0.017031949,0.00018522434,0.9442928],"study_design_scores_gemma":[0.0004644098,0.00017727882,0.000048243517,0.0039300877,0.00070617825,0.0003184786,0.000011578301,0.0000010310989,0.0042239255,0.0009152445,0.9889399,0.0002636902],"about_ca_topic_score_codex":0.000104301434,"about_ca_topic_score_gemma":0.000002375839,"teacher_disagreement_score":0.98875463,"about_ca_system_score_codex":0.00005943248,"about_ca_system_score_gemma":0.00013072284,"threshold_uncertainty_score":0.999886},"labels":[],"label_agreement":null},{"id":"W2155305990","doi":"10.1126/science.1124256","title":"A Critical Role for the Innate Immune Signaling Molecule IRAK-4 in T Cell Activation","year":2006,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":111,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; Ontario Institute for Cancer Research","funders":"","keywords":"Innate immune system; Cell biology; Acquired immune system; Biology; Signal transduction; Lipid raft; Immune system; T cell; Regulator; ZAP70; Innate lymphoid cell; T-cell receptor; Immunology; Biochemistry; Gene","score_opus":0.007319329745454724,"score_gpt":0.24734569828660694,"score_spread":0.24002636854115222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155305990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9919029,0.0011810034,0.0049731326,0.0005900759,0.00018816021,0.0002077765,0.0000010199982,0.000015947868,0.00094002264],"genre_scores_gemma":[0.99927044,0.00000468247,0.000112662805,0.00006313066,0.000015004552,0.000032425316,0.000006750775,0.0000035501864,0.0004913246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993782,0.000048894366,0.00015686385,0.00014234503,0.000035957797,0.00023773704],"domain_scores_gemma":[0.99950206,0.00024208296,0.000037567355,0.00013323559,0.000081184175,0.000003889839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007438258,0.000054358425,0.00006045603,0.00009716526,0.00031230325,0.00003273828,0.0002157716,0.000050587885,0.000025721281],"category_scores_gemma":[0.00027693468,0.000040027997,0.000026482348,0.00028854716,0.00031023484,0.00018678105,0.00003972188,0.000090792506,0.000037320257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005729419,0.000023332474,0.000059795595,0.0000029527807,8.856554e-7,1.4238736e-7,0.00013804583,0.00018069618,0.99607867,0.0025624176,0.00002790191,0.0008678681],"study_design_scores_gemma":[0.00029123857,0.00004168285,0.008741664,0.000011329742,0.000002850993,0.0000022209504,0.00017876837,0.0004871054,0.98651725,0.0010005024,0.0026696406,0.000055732206],"about_ca_topic_score_codex":0.00009559125,"about_ca_topic_score_gemma":0.0000039409374,"teacher_disagreement_score":0.009561403,"about_ca_system_score_codex":0.000028907201,"about_ca_system_score_gemma":0.00008792777,"threshold_uncertainty_score":0.24020158},"labels":[],"label_agreement":null},{"id":"W2155752130","doi":"10.1074/jbc.m110.109736","title":"A Role for the Human Nucleotide-binding Domain, Leucine-rich Repeat-containing Family Member NLRC5 in Antiviral Responses","year":2010,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":168,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Universität zu Köln; Ministry of Education, Culture, Sports, Science and Technology; University of Toronto; Deutsche Forschungsgemeinschaft; European Commission","keywords":"Innate immune system; Sendai virus; Biology; NOD2; NOD1; HEK 293 cells; Gene knockdown; Interferon; Immune system; Cell biology; Pattern recognition receptor; Virus; Receptor; Virology; Immunology; Cell culture; Biochemistry; Genetics","score_opus":0.024237489443734186,"score_gpt":0.277926368389603,"score_spread":0.25368887894586883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2155752130","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99699897,0.0009067253,0.000027952923,0.00037125067,0.00024396507,0.00012857509,0.000006280544,0.000015616131,0.0013006767],"genre_scores_gemma":[0.9987438,0.00005872888,0.00015437005,0.00008446168,0.00017775875,0.000011115907,0.00001494812,0.000009951097,0.00074488594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986465,0.0001598319,0.00065697957,0.00017123419,0.00004589229,0.00031957726],"domain_scores_gemma":[0.99834085,0.0008684505,0.0004475905,0.00020064313,0.00012337658,0.000019099887],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001778183,0.00016450576,0.00034515117,0.000061811435,0.00024907113,0.000028519724,0.00035586927,0.0004094085,0.0001940278],"category_scores_gemma":[0.0009359259,0.00009684592,0.00020036427,0.000101523525,0.0002085976,0.0001032076,0.00007214179,0.0008960333,0.000013637475],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016130839,0.000057919024,0.0068731215,0.000009286779,0.00007022643,0.000015969646,0.00021808033,0.0000012373879,0.98937416,0.000081418926,0.00027714358,0.0014083257],"study_design_scores_gemma":[0.0017180063,0.000290888,0.035344146,0.000046605324,0.000023085604,0.00025465357,0.0017218271,0.0000025135628,0.93983084,0.00040997303,0.020203441,0.00015401145],"about_ca_topic_score_codex":0.000008224542,"about_ca_topic_score_gemma":0.0000035911157,"teacher_disagreement_score":0.049543336,"about_ca_system_score_codex":0.00003893378,"about_ca_system_score_gemma":0.000069952475,"threshold_uncertainty_score":0.3949262},"labels":[],"label_agreement":null},{"id":"W2156613610","doi":"10.1016/j.cell.2008.02.043","title":"Identification of Oxidative Stress and Toll-like Receptor 4 Signaling as a Key Pathway of Acute Lung Injury","year":2008,"lang":"en","type":"article","venue":"Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1356,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Toronto; Lawson Health Research Institute; Western University","funders":"Defense Threat Reduction Agency; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Canadian Institutes of Health Research; European Commission; University of Pittsburgh","keywords":"TRIF; TLR4; Oxidative stress; Biology; Immunology; Innate immune system; Influenza A virus subtype H5N1; Lung; Toll-like receptor; Receptor; Signal transduction; Inflammation; Immune system; Medicine; Cell biology; Internal medicine; Virus; Biochemistry","score_opus":0.006945992174811727,"score_gpt":0.22396490936352806,"score_spread":0.21701891718871633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156613610","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978016,0.001254486,0.00020893505,0.000019809659,0.00017894423,0.00014273443,0.000045435707,0.000011821148,0.00033623038],"genre_scores_gemma":[0.99664223,0.00040007386,0.000054470438,0.000009840482,0.00000728408,0.0000070170295,0.000113713875,0.0000065386175,0.002758857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99929696,0.00013470609,0.00031847076,0.00012252964,0.00002698758,0.00010037246],"domain_scores_gemma":[0.9994225,0.0000682358,0.00026003885,0.00014699178,0.00009452939,0.0000077230225],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014898254,0.0000777542,0.00016598143,0.00008552406,0.00007489699,0.0000027534,0.0000803268,0.00012151666,0.00014907184],"category_scores_gemma":[0.000023779075,0.00007320052,0.000041122174,0.00007406743,0.00014121417,0.00010520247,0.000033561973,0.00008525896,0.00006590913],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030588562,0.000052702482,0.00030456792,0.00004385642,0.00008551777,0.0000010022475,0.002630765,0.0000021769144,0.9957374,0.00009190739,0.00034406834,0.0004001867],"study_design_scores_gemma":[0.0003804439,0.0001215524,0.00077735435,0.000036767553,0.000033742424,0.000007460197,0.00031059334,0.0000056078966,0.9974792,0.000024267927,0.0007533689,0.000069614405],"about_ca_topic_score_codex":0.000019223435,"about_ca_topic_score_gemma":3.5163944e-7,"teacher_disagreement_score":0.0024226268,"about_ca_system_score_codex":0.000011136199,"about_ca_system_score_gemma":0.000051262523,"threshold_uncertainty_score":0.29850304},"labels":[],"label_agreement":null},{"id":"W2156635682","doi":"10.2174/138161209787846775","title":"Antiviral Role of Toll-Like Receptor-3 Agonists Against Seasonal and Avian Influenza Viruses","year":2009,"lang":"en","type":"review","venue":"Current Pharmaceutical Design","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Defence Research and Development Canada","funders":"","keywords":"Biology; Proinflammatory cytokine; Influenza A virus subtype H5N1; Virus; Virology; Influenza A virus; Innate immune system; Antigenic drift; Immunology; Antiviral drug; Immune system; Inflammation","score_opus":0.11360327170216698,"score_gpt":0.3950348244608122,"score_spread":0.2814315527586452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156635682","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00035623662,0.9970817,0.000115394745,0.0000109293715,0.0011288337,0.0009200975,0.00008011519,0.00007401296,0.00023270387],"genre_scores_gemma":[0.0005076899,0.99871767,0.00006176748,0.000107792686,0.00011863835,0.00005491307,0.000302465,0.000040710587,0.000088340625],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962853,0.0015613311,0.0009779152,0.0005146642,0.000101650156,0.0005591438],"domain_scores_gemma":[0.99857205,0.000516672,0.00043676153,0.00031402713,0.00008717778,0.00007331951],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006325902,0.0005916976,0.0015446062,0.00025124615,0.0001641808,0.000041235813,0.00036971594,0.000597421,0.00018265194],"category_scores_gemma":[0.00013329662,0.000497559,0.00040615673,0.00023676125,0.00040031923,0.00018833621,0.00013451236,0.0010045163,0.0006726466],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027840337,0.00019002015,0.0000108775685,0.002092846,0.0002842795,0.0000030872334,0.00005096448,2.7569374e-7,0.00719599,0.00024834994,0.0020002502,0.9876447],"study_design_scores_gemma":[0.0008048931,0.00015359018,0.000012925661,0.0041025346,0.00064638903,0.000032443273,0.0000070435817,0.000010985491,0.009190443,0.000037183592,0.9845257,0.00047586436],"about_ca_topic_score_codex":8.071025e-7,"about_ca_topic_score_gemma":5.7317234e-8,"teacher_disagreement_score":0.9871688,"about_ca_system_score_codex":0.00007409527,"about_ca_system_score_gemma":0.0003534315,"threshold_uncertainty_score":0.99974763},"labels":[],"label_agreement":null},{"id":"W2156666186","doi":"10.1038/ni1471","title":"Cell surface 4-1BBL mediates sequential signaling pathways 'downstream' of TLR and is required for sustained TNF production in macrophages","year":2007,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Western University","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Eye Institute","keywords":"TLR4; TRIF; Tumor necrosis factor alpha; Cell biology; Toll-like receptor; Stimulation; Lipopolysaccharide; Receptor; Cytokine; Transcription factor; Biology; Signal transduction; Immunology; Innate immune system; Endocrinology; Biochemistry; Gene","score_opus":0.007381186230525865,"score_gpt":0.24193245038886893,"score_spread":0.23455126415834307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156666186","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9650979,0.03238753,0.00013996815,0.00050806545,0.0011242578,0.0005513924,0.000022230148,0.00004594758,0.00012272113],"genre_scores_gemma":[0.9979768,0.0004922643,0.0004230249,0.000053828582,0.00005290743,0.00001232817,0.0001897672,0.00002204855,0.00077707745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983139,0.00020833903,0.0005740945,0.00036818272,0.00004309927,0.0004923828],"domain_scores_gemma":[0.9988162,0.00037651457,0.00030078125,0.0002613518,0.00023314593,0.000012007932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010509484,0.00021785352,0.0004010072,0.00030192535,0.00012777357,0.000008337394,0.00016907913,0.0011294062,0.00006120318],"category_scores_gemma":[0.00037647216,0.00020448148,0.000084836545,0.00024288407,0.00029814945,0.0001633053,0.000072548224,0.0006028208,0.000012957127],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002446522,0.0000897862,0.00049245503,0.00008666646,0.00011027092,0.0000075449116,0.0015408685,0.000008548251,0.98956513,0.00044528703,0.00033755606,0.004869343],"study_design_scores_gemma":[0.0022429281,0.00035187352,0.0031499425,0.000039283546,0.000038723523,0.00004824113,0.0014996887,0.000004231656,0.9890694,0.0004635667,0.0029097246,0.0001824085],"about_ca_topic_score_codex":0.000058469945,"about_ca_topic_score_gemma":0.000022295106,"teacher_disagreement_score":0.032878865,"about_ca_system_score_codex":0.00007235415,"about_ca_system_score_gemma":0.00010221086,"threshold_uncertainty_score":0.87110144},"labels":[],"label_agreement":null},{"id":"W2156856697","doi":"10.4049/jimmunol.0901518","title":"TRIL, a Functional Component of the TLR4 Signaling Complex, Highly Expressed in Brain","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Cell biology; TLR4; Biology; HEK 293 cells; Gene knockdown; Signal transduction; Stimulation; Transmembrane protein; Molecular biology; Cell culture; Receptor; Neuroscience; Biochemistry; Genetics","score_opus":0.018941155623691468,"score_gpt":0.22997157677933708,"score_spread":0.2110304211556456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156856697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98584855,0.0039675636,0.00031700032,0.00893829,0.00061177724,0.00013663493,0.0000025883742,0.0000064833284,0.00017113978],"genre_scores_gemma":[0.9990962,0.0001428526,0.00002609019,0.00043594203,0.000035449877,0.0000011018426,0.0000062407576,0.000005834937,0.00025027947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99751866,0.0013224996,0.00079297024,0.000070719696,0.00006751917,0.0002276417],"domain_scores_gemma":[0.99816513,0.00070743007,0.0007123545,0.00026498237,0.00014354833,0.00000653975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013002199,0.00012561517,0.0003622289,0.0001937653,0.0001439825,0.000005077512,0.00049636466,0.00015922317,0.00021253567],"category_scores_gemma":[0.00020991724,0.000070425034,0.00015957051,0.00019703968,0.00028129772,0.000098192206,0.000060210452,0.0005689749,0.000025019173],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002929313,0.0001274823,0.00010370998,0.0000029401835,0.00015010472,0.0000023159917,0.00084838417,0.00036285515,0.9904063,0.0010127955,0.0017173485,0.0023364823],"study_design_scores_gemma":[0.0039522694,0.000769007,0.18003099,0.00011233682,0.000059473554,0.00064778025,0.00071682606,0.000015643473,0.79708886,0.0015061024,0.014987894,0.000112849004],"about_ca_topic_score_codex":0.00003164902,"about_ca_topic_score_gemma":0.000003912264,"teacher_disagreement_score":0.19331743,"about_ca_system_score_codex":0.000055020013,"about_ca_system_score_gemma":0.0001161815,"threshold_uncertainty_score":0.28718495},"labels":[],"label_agreement":null},{"id":"W2156926406","doi":"10.4049/jimmunol.0901374","title":"CD36 and TLR Interactions in Inflammation and Phagocytosis: Implications for Malaria","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Hospital for Sick Children; Toronto General Hospital; University Health Network; University of Toronto; Centre for Global Health Research; Toronto Rehabilitation Institute","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"Phagocytosis; CD36; Inflammation; Malaria; Immunology; Biology; Microbiology; Receptor; Genetics","score_opus":0.014751334981098256,"score_gpt":0.2767183160896996,"score_spread":0.26196698110860134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156926406","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750832,0.007266079,0.00090762164,0.016229881,0.00020496562,0.00019161805,0.0000020728394,0.0000072053963,0.00010737897],"genre_scores_gemma":[0.99807334,0.0015332524,0.00011677643,0.000088654466,0.000030155532,0.000006803795,0.0000064101414,0.0000042035454,0.0001403951],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99915004,0.00022732645,0.0004121589,0.000059791797,0.000010837271,0.0001398317],"domain_scores_gemma":[0.9990978,0.00037854744,0.00029114628,0.00011906034,0.00010658397,0.0000068190243],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060000375,0.000080353384,0.00018043324,0.00020643558,0.00014822536,0.000011447145,0.00011646726,0.00008521953,0.000016867516],"category_scores_gemma":[0.00018288681,0.000057191894,0.000034909255,0.00007971113,0.00010950888,0.00023296819,0.000022723387,0.00025421852,0.0000059003332],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008598129,0.000026765103,0.00026302534,0.0000030488245,0.00008555095,2.859871e-7,0.00096800417,0.0000057195084,0.9401114,0.005796258,0.0001790479,0.051701073],"study_design_scores_gemma":[0.004355983,0.0012000977,0.70147973,0.00009658019,0.00017975413,0.0029411109,0.0014159732,0.000026464539,0.24815302,0.013233184,0.026734453,0.0001836612],"about_ca_topic_score_codex":0.000011225114,"about_ca_topic_score_gemma":0.0000145727745,"teacher_disagreement_score":0.7012167,"about_ca_system_score_codex":0.000029274694,"about_ca_system_score_gemma":0.00003742639,"threshold_uncertainty_score":0.23322177},"labels":[],"label_agreement":null},{"id":"W2156961003","doi":"10.1111/j.1365-2958.2005.04711.x","title":"The lipid A palmitoyltransferase PagP: molecular mechanisms and role in bacterial pathogenesis","year":2005,"lang":"en","type":"review","venue":"Molecular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Bacterial outer membrane; Biology; Biochemistry; Bacteria; Palmitoylation; Lipid A; Phospholipid; Lipid bilayer; Enzyme; Cell biology; Biophysics; Microbiology; Membrane; Escherichia coli; Gene","score_opus":0.0069765964926005635,"score_gpt":0.23304782927395684,"score_spread":0.22607123278135627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2156961003","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0033417384,0.9940435,0.00030486562,0.00012253133,0.00078130636,0.0011378089,0.000109982706,0.000053336033,0.00010492354],"genre_scores_gemma":[0.0008187354,0.99678665,0.00011296937,0.00013381016,0.00005711142,0.0003059778,0.0014633003,0.00009493347,0.00022652924],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99480915,0.002435611,0.001077517,0.0007877274,0.000029061917,0.00086093857],"domain_scores_gemma":[0.9985647,0.0003204139,0.00030615306,0.0007193616,0.000053770807,0.000035601133],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007207249,0.00073880836,0.0015965528,0.00033410036,0.00024923484,0.00005884521,0.0005938266,0.0015710071,0.00014833416],"category_scores_gemma":[0.00010471231,0.0005391833,0.0005210059,0.000255974,0.00032677912,0.000050969997,0.00023651434,0.00076544215,0.00041052682],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006959079,0.00003869166,1.651665e-7,0.00019319594,0.00022084317,0.00005710048,0.000035383295,3.8107092e-7,0.56487286,0.0007323129,0.00004338627,0.43373612],"study_design_scores_gemma":[0.0007824531,0.00014583787,0.0000015967584,0.0006360187,0.00037502672,0.0010251555,0.000022886034,2.671613e-7,0.040880375,0.00007940333,0.9555093,0.0005416604],"about_ca_topic_score_codex":0.000030423014,"about_ca_topic_score_gemma":0.000035740955,"teacher_disagreement_score":0.9554659,"about_ca_system_score_codex":0.00011015775,"about_ca_system_score_gemma":0.0002495222,"threshold_uncertainty_score":0.99972516},"labels":[],"label_agreement":null},{"id":"W2157169298","doi":"10.2174/138945011794751555","title":"The Molecular Mechanisms of Glucocorticoids-Mediated Neutrophil Survival","year":2011,"lang":"en","type":"review","venue":"Current Drug Targets","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":153,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Apotex (Canada); University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Immunology; Medicine; Asthma; Glucocorticoid; Cystic fibrosis; Bronchiolitis; Disease; Innate immune system; Immune system; Pathology; Internal medicine; Virus","score_opus":0.02834411754700061,"score_gpt":0.28573387889940677,"score_spread":0.25738976135240615,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157169298","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000053017084,0.9932753,0.00023176728,0.000020494841,0.0052158977,0.0007979624,0.000051634273,0.00005908093,0.0002948519],"genre_scores_gemma":[0.00021836905,0.99814457,0.000008597014,0.000004526014,0.000039121973,0.00013625667,0.0009907003,0.0000521732,0.00040568275],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968868,0.0011055345,0.0010601335,0.0003668827,0.000072633644,0.0005079974],"domain_scores_gemma":[0.99782276,0.00039755285,0.00088495447,0.00071958965,0.000146197,0.000028941211],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00066329597,0.00047773158,0.0013083665,0.00017317226,0.00021395407,0.000015290947,0.0007230959,0.00037452384,0.00018231323],"category_scores_gemma":[0.00023103545,0.00030577133,0.00066991517,0.00022420578,0.0002342004,0.000060310045,0.00021697498,0.00071114296,0.0012672313],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006472315,0.0001639623,4.0592926e-7,0.0026768981,0.0006362273,0.0000057291454,0.00013465185,1.328439e-7,0.002139947,0.025283657,0.0014558373,0.9674378],"study_design_scores_gemma":[0.00031920354,0.000045008743,0.00000340934,0.0015780311,0.00049006677,0.000013535151,0.000017484512,4.0688698e-7,0.0043395488,0.0006301738,0.99226093,0.00030218888],"about_ca_topic_score_codex":0.000014112561,"about_ca_topic_score_gemma":0.0000022023987,"teacher_disagreement_score":0.9908051,"about_ca_system_score_codex":0.000051356976,"about_ca_system_score_gemma":0.00030668578,"threshold_uncertainty_score":0.99993944},"labels":[],"label_agreement":null},{"id":"W2157310133","doi":"10.1016/j.immuni.2007.02.012","title":"The Toll–Interleukin-1 Receptor Member SIGIRR Regulates Colonic Epithelial Homeostasis, Inflammation, and Tumorigenesis","year":2007,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":334,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Azoxymethane; Biology; Homeostasis; Colitis; Immunology; Carcinogenesis; Inflammation; Intestinal epithelium; Epithelium; Immune system; Downregulation and upregulation; Proinflammatory cytokine; Receptor; Cancer research; Cell biology; Gene; Biochemistry","score_opus":0.009549740124022425,"score_gpt":0.24253102118841546,"score_spread":0.23298128106439303,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157310133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99022335,0.006786807,0.00004087486,0.00075997174,0.00085393543,0.000296333,0.0000103831835,0.000086845735,0.00094149477],"genre_scores_gemma":[0.9949927,0.0011883068,0.000041514882,0.000036893685,0.000073902,0.00002008331,0.000094743955,0.000016464728,0.003535396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983244,0.00048324084,0.0005161598,0.0001815086,0.000056758705,0.0004379586],"domain_scores_gemma":[0.9981974,0.000916734,0.00021501323,0.00048091583,0.00016449168,0.000025452458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018918404,0.00019924298,0.00022741414,0.000108092754,0.0010794784,0.00006595692,0.00029414412,0.00022925026,0.00028995101],"category_scores_gemma":[0.00037828417,0.00014632361,0.00008392523,0.00017043953,0.00040178827,0.00020457679,0.000143378,0.0003387103,0.0005287398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010762865,0.000036894948,0.00051619747,0.000012881744,0.00016769093,0.0000022085733,0.0012484436,0.0000012716698,0.93606436,0.0016170674,0.0015626247,0.057694074],"study_design_scores_gemma":[0.00062521186,0.00012821348,0.028776217,0.00002247386,0.000026429816,0.00004417145,0.0007094127,0.0000014801391,0.7186845,0.0002351134,0.25059107,0.00015572054],"about_ca_topic_score_codex":0.00033603137,"about_ca_topic_score_gemma":0.00028940372,"teacher_disagreement_score":0.24902844,"about_ca_system_score_codex":0.000084323154,"about_ca_system_score_gemma":0.0000812316,"threshold_uncertainty_score":0.8302585},"labels":[],"label_agreement":null},{"id":"W2157494890","doi":"10.1186/1476-9255-7-57","title":"The role of toll-like receptors in acute and chronic lung inflammation","year":2010,"lang":"en","type":"article","venue":"Journal of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Deutsche Forschungsgemeinschaft; McGill University Health Centre; McGill University","keywords":"Medicine; Inflammation; Toll; Receptor; Human physiology; Molecular medicine; Immunology; Lung; Toll-like receptor; Intensive care medicine; Internal medicine; Innate immune system","score_opus":0.002469161216935541,"score_gpt":0.21467854661542987,"score_spread":0.21220938539849432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157494890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958551,0.0019890696,0.00006299155,0.0005995962,0.0010582046,0.0001648209,5.255349e-7,0.0000067098767,0.00026298477],"genre_scores_gemma":[0.99868304,0.00088710594,0.000063177,0.000003538796,0.00012606806,0.0000052802557,0.000010004407,0.000007653228,0.00021415824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99870384,0.000178177,0.0008193261,0.00007008568,0.00007248369,0.000156076],"domain_scores_gemma":[0.9985817,0.00021395067,0.000832227,0.00014561594,0.00021305749,0.000013463772],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011801503,0.000101552585,0.00020057673,0.000239479,0.000121245954,0.000026399073,0.00015557489,0.00019721902,0.000055658737],"category_scores_gemma":[0.000221915,0.00007180271,0.00006627268,0.0001310519,0.00011417191,0.00050654064,0.00003222117,0.00044193846,0.000015049963],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031306397,0.0000067407923,0.0017447761,0.000011889905,0.00007517578,0.000001176663,0.0007059775,0.000026895612,0.87244326,0.0016918677,0.0001010695,0.12287813],"study_design_scores_gemma":[0.0011689847,0.00015183851,0.012971793,0.000077223165,0.00004753621,0.00016634482,0.00033397856,0.00039708937,0.9346965,0.0008908697,0.049005724,0.000092114584],"about_ca_topic_score_codex":0.000008664369,"about_ca_topic_score_gemma":0.000097742384,"teacher_disagreement_score":0.122786015,"about_ca_system_score_codex":0.00005973592,"about_ca_system_score_gemma":0.00013483335,"threshold_uncertainty_score":0.29280293},"labels":[],"label_agreement":null},{"id":"W2157651734","doi":"10.1152/ajpregu.00301.2006","title":"Circulating interleukin-6 induces fever through a STAT3-linked activation of COX-2 in the brain","year":2006,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":180,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Douglas Mental Health University Institute","funders":"","keywords":"Interleukin; Medicine; Immunology; Neuroscience; Biology; Cytokine","score_opus":0.022282622609290818,"score_gpt":0.28332919510175275,"score_spread":0.26104657249246194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2157651734","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9979213,0.00056090177,0.00029285764,0.00047907935,0.00016329582,0.00024929974,0.000007923551,0.000008830648,0.00031650977],"genre_scores_gemma":[0.9991925,0.000029468938,0.0001763477,0.00036791476,0.00009316692,0.000020399555,0.0000546443,0.000010591356,0.000054989447],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9960068,0.0022526865,0.0010070628,0.0003058709,0.0000887423,0.00033887272],"domain_scores_gemma":[0.99630517,0.0013980715,0.0016551224,0.00025394178,0.00037295156,0.000014762634],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005494394,0.00033818057,0.0011285575,0.00024996698,0.00015533289,0.000011595077,0.00037380258,0.0001490463,0.000072859155],"category_scores_gemma":[0.00010112847,0.0002110272,0.00020262295,0.00041840386,0.002013886,0.00037366495,0.000061734514,0.00071048294,0.000010813867],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011352228,0.00022481533,0.00045090175,0.000012170759,0.00026207996,0.0000014816414,0.008930534,0.00025346244,0.97810775,0.008804835,0.001001086,0.00081563584],"study_design_scores_gemma":[0.0017066135,0.0021656193,0.54623014,0.00017764558,0.000048511352,0.00009035999,0.027187467,0.000046267975,0.4121849,0.00855058,0.001336816,0.00027505722],"about_ca_topic_score_codex":0.00048624515,"about_ca_topic_score_gemma":0.000040576317,"teacher_disagreement_score":0.56592286,"about_ca_system_score_codex":0.00006979605,"about_ca_system_score_gemma":0.00013957942,"threshold_uncertainty_score":0.86054397},"labels":[],"label_agreement":null},{"id":"W2158014646","doi":"10.1189/jlb.0411183","title":"Nod-like receptors in intestinal homeostasis, inflammation, and cancer","year":2011,"lang":"en","type":"review","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; H2020 European Research Council; Howard Hughes Medical Institute; Canadian Association of Gastroenterology; Crohn's and Colitis Foundation of Canada; Institut Pasteur","keywords":"Biology; Inflammation; Homeostasis; Nod; Receptor; Cancer; Glucose homeostasis; Immunology; Cancer research; Cell biology; Diabetes mellitus; Endocrinology; Genetics","score_opus":0.04079395514719277,"score_gpt":0.31619110940795553,"score_spread":0.2753971542607628,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158014646","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0028077709,0.9940738,0.000019853313,0.00005706855,0.0026687349,0.00024455864,0.0000055347887,0.000011074341,0.00011160298],"genre_scores_gemma":[0.00016072161,0.99899155,0.00008310659,0.000019628447,0.00019655094,0.000023426403,0.00007262586,0.00002740257,0.00042497806],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967554,0.0010058783,0.0016250159,0.00023670316,0.000027633027,0.00034934186],"domain_scores_gemma":[0.9973547,0.0003878839,0.0018265474,0.00019388185,0.00020390621,0.000033071938],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009757549,0.00037404514,0.0017481007,0.0009114866,0.000068205845,0.000013329062,0.0003579088,0.0008913528,0.00045402758],"category_scores_gemma":[0.00031139352,0.0002699157,0.00028607177,0.00025014798,0.00026456764,0.00017110673,0.000111673995,0.0010503287,0.00011173094],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022203015,0.000024396555,0.00013451184,0.00079465,0.00032990985,0.000013750958,0.00021743627,1.2549091e-7,0.00052350806,0.00022489713,0.0011154423,0.99639934],"study_design_scores_gemma":[0.0007086933,0.0003438428,0.00008676506,0.0040400666,0.00030292734,0.00125604,0.00003797203,1.1302494e-7,0.0005656514,0.000069491456,0.9923342,0.00025427237],"about_ca_topic_score_codex":0.000096339514,"about_ca_topic_score_gemma":0.00003358808,"teacher_disagreement_score":0.99614507,"about_ca_system_score_codex":0.00023301192,"about_ca_system_score_gemma":0.0007265538,"threshold_uncertainty_score":0.9999753},"labels":[],"label_agreement":null},{"id":"W2158342892","doi":"10.1371/journal.ppat.1000500","title":"NOD2, RIP2 and IRF5 Play a Critical Role in the Type I Interferon Response to Mycobacterium tuberculosis","year":2009,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":286,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Peptidoglycan; IRF3; Biology; Mycobacterium tuberculosis; Interferon regulatory factors; Pattern recognition receptor; NOD2; IRF5; Microbiology; Interferon; Innate immune system; TLR2; Cell biology; Immune system; Bacteria; Tuberculosis; Immunology; Genetics; Medicine","score_opus":0.010749798597023939,"score_gpt":0.2475157043238006,"score_spread":0.23676590572677667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158342892","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933047,0.0008513883,0.0000124011685,0.0048925113,0.00014468926,0.00023411469,0.000015129774,0.000033456796,0.0005116072],"genre_scores_gemma":[0.99845064,0.000048979353,0.000056982033,0.0011500729,0.000028189426,0.000019724606,0.000024400011,0.000009082774,0.00021192658],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984829,0.00070394424,0.00023868501,0.00022375006,0.000041119463,0.0003095945],"domain_scores_gemma":[0.99919945,0.00041609816,0.00002571252,0.00028093407,0.00005532947,0.000022465458],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005435183,0.00014259241,0.0001867028,0.00014881678,0.00011297542,0.000031584907,0.00015645164,0.00017394015,0.00013269414],"category_scores_gemma":[0.0007518291,0.000106226726,0.00004062892,0.0001857459,0.000061876344,0.000092056165,0.000046406658,0.00023694859,0.00054601085],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034732309,0.00012938761,0.00051546335,0.00000536878,0.000018930737,0.000018528646,0.004477966,6.4323467e-7,0.9884934,0.0002011021,0.0003651775,0.0023008226],"study_design_scores_gemma":[0.0013485954,0.003744449,0.52130526,0.00017714273,0.00011731367,0.0002317089,0.0021732291,0.000030384555,0.44047174,0.00038213062,0.029523157,0.0004948824],"about_ca_topic_score_codex":0.000009159032,"about_ca_topic_score_gemma":0.0000075818625,"teacher_disagreement_score":0.5480217,"about_ca_system_score_codex":0.000033037493,"about_ca_system_score_gemma":0.0000299899,"threshold_uncertainty_score":0.70180476},"labels":[],"label_agreement":null},{"id":"W2158476520","doi":"10.1152/ajpregu.90335.2008","title":"Immune-to-brain signaling and central prostaglandin E<sub>2</sub>synthesis in fasted rats with altered lipopolysaccharide-induced fever","year":2008,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Douglas Mental Health University Institute","funders":"","keywords":"Endocrinology; Lipopolysaccharide; Internal medicine; Prostaglandin E2; Immune system; Cytokine; SOCS3; Hypothalamus; Inflammation; Prostaglandin; Central nervous system; Receptor; Cyclooxygenase; Hypothermia; Receptor antagonist; Tumor necrosis factor alpha; Innate immune system; Chemistry; Biology; Medicine; Antagonist; Immunology; Enzyme; Suppressor; Biochemistry","score_opus":0.017063749876221373,"score_gpt":0.24090079192881036,"score_spread":0.223837042052589,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158476520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826556,0.00062988617,0.00010603949,0.0003239588,0.00021591932,0.0004064435,0.000013258262,0.000019409092,0.000019512301],"genre_scores_gemma":[0.99921113,0.00013070047,0.00016280985,0.0002740899,0.0000910545,0.00005267258,0.000021716747,0.000023438388,0.00003238902],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99621433,0.0016184469,0.00089356414,0.0005355461,0.0000902606,0.0006478225],"domain_scores_gemma":[0.9974789,0.000863097,0.0009591085,0.00026459008,0.00032872718,0.00010558945],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00029693625,0.0005346229,0.0016751422,0.00049518,0.00029449243,0.000014754073,0.00026781048,0.00017617368,0.00004173999],"category_scores_gemma":[0.00011846119,0.00037061333,0.0001549,0.0003688314,0.0016626392,0.0003127722,0.000098673394,0.0007684504,0.000019007402],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056769075,0.00017446045,0.001408951,0.00001160389,0.00054826576,0.000009370903,0.0066361167,0.000118699034,0.9829823,0.00034622036,0.00018684956,0.0019002928],"study_design_scores_gemma":[0.0012225521,0.0024948034,0.30654436,0.00015195485,0.00004030067,0.0002067973,0.004068037,0.000026751053,0.68475497,0.00010378541,0.00008209578,0.00030358485],"about_ca_topic_score_codex":0.00011313809,"about_ca_topic_score_gemma":0.00004703936,"teacher_disagreement_score":0.30513543,"about_ca_system_score_codex":0.00009984494,"about_ca_system_score_gemma":0.00024498088,"threshold_uncertainty_score":0.9998746},"labels":[],"label_agreement":null},{"id":"W2158602538","doi":"10.1002/eji.200838185","title":"TLR2 and TLR4 signaling shapes specific antibody responses to <i>Salmonella typhi</i> antigens","year":2009,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":60,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"Universidad Nacional Autónoma de México; Consejo Nacional de Ciencia y Tecnología","keywords":"Biology; TLR2; Antigen; Salmonella typhi; TLR4; Immune system; Microbiology; Antibody; CD11c; Innate immune system; Immunology; Gene","score_opus":0.014079894004747953,"score_gpt":0.24612818029036249,"score_spread":0.23204828628561452,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158602538","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9740283,0.020614924,0.0010624198,0.0015562096,0.0006456349,0.00011684228,0.0000032427743,0.0000366296,0.0019358266],"genre_scores_gemma":[0.9957111,0.002254217,0.000521447,0.00050479436,0.00013354067,2.6818884e-7,0.00000876097,0.000026626869,0.000839236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.996912,0.0015314951,0.00082663813,0.0002266665,0.00005622421,0.00044698757],"domain_scores_gemma":[0.99885356,0.00022584254,0.0004350174,0.0002276116,0.00021250735,0.00004543192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016431677,0.0002356547,0.00045485364,0.00049564586,0.0002278825,0.000045308636,0.00038750368,0.00010583745,0.00019383217],"category_scores_gemma":[0.0002608333,0.00020294519,0.00013049306,0.00020470531,0.00017762618,0.00018967513,0.00008741463,0.00050990743,0.0006890775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002620955,0.00006738763,0.00021413025,0.0000031058594,0.00015365404,0.0002831282,0.0009239873,0.000012692514,0.9676247,0.00033029352,0.0014858386,0.026280085],"study_design_scores_gemma":[0.0026061335,0.0042102356,0.21753554,0.00021237321,0.000063798805,0.0046703396,0.00082839123,0.000001065819,0.5000375,0.00009084047,0.26932004,0.0004237486],"about_ca_topic_score_codex":0.0000016003111,"about_ca_topic_score_gemma":1.744485e-7,"teacher_disagreement_score":0.46758726,"about_ca_system_score_codex":0.00002953776,"about_ca_system_score_gemma":0.000059125454,"threshold_uncertainty_score":0.8856927},"labels":[],"label_agreement":null},{"id":"W2158737537","doi":"10.4049/jimmunol.181.10.7157","title":"NOD2-Deficient Mice Have Impaired Resistance to <i>Mycobacterium tuberculosis</i> Infection through Defective Innate and Adaptive Immunity","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":210,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; McGill University; Howard Hughes Medical Institute","keywords":"NOD2; Biology; Innate immune system; Immunity; Immunology; Mycobacterium tuberculosis; Acquired immune system; Immune system; Microbiology; Tuberculosis; Medicine; Pathology","score_opus":0.014076165929668878,"score_gpt":0.22956764894267986,"score_spread":0.215491483013011,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158737537","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9845118,0.01125354,0.0012976107,0.0010670043,0.00084311544,0.00028815327,0.000007062292,0.000027631098,0.0007041167],"genre_scores_gemma":[0.9941384,0.004763245,0.00012814962,0.00032174715,0.00004151904,0.000009460736,0.0000069360653,0.000019605144,0.0005709042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99713236,0.0015731476,0.0006739435,0.00015994789,0.00007023862,0.00039038144],"domain_scores_gemma":[0.998042,0.0005065629,0.00059161644,0.00033536577,0.0005028816,0.000021587904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010411077,0.00024649035,0.00046988812,0.00021842681,0.00066742447,0.000012314801,0.00027672306,0.00027497072,0.00004518221],"category_scores_gemma":[0.00032846376,0.00017565326,0.00014299036,0.0002597595,0.00055996026,0.00035837223,0.00018599248,0.0008478813,0.000110912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007779637,0.00014047617,0.00072149443,0.000011276527,0.00068793306,0.0000151304685,0.014008295,0.000058956422,0.9740889,0.00023906984,0.0014966652,0.0007521625],"study_design_scores_gemma":[0.0032392656,0.0027946576,0.18281507,0.00019433635,0.00029280275,0.0073826434,0.002860583,0.0000047212257,0.76759434,0.0005939501,0.031800006,0.0004276045],"about_ca_topic_score_codex":0.0004347417,"about_ca_topic_score_gemma":0.0001023955,"teacher_disagreement_score":0.20649454,"about_ca_system_score_codex":0.0001835248,"about_ca_system_score_gemma":0.00014156,"threshold_uncertainty_score":0.7162932},"labels":[],"label_agreement":null},{"id":"W2158766590","doi":"10.1124/jpet.104.072421","title":"Comparative Study of Glucocorticoids, Cyclosporine A, and JTE-607 [(-)-Ethyl-N-{3,5-dichloro-2-hydroxy-4-[2-(4-methylpiperazin-1-yl)ethoxy]benzoyl}-l-phenylalaninate Dihydrochloride] in a Mouse Septic Shock Model","year":2004,"lang":"en","type":"article","venue":"Journal of Pharmacology and Experimental Therapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Gambling Research Exchange Ontario; Shionogi; Cell Science Research Foundation","keywords":"Proinflammatory cytokine; Myeloperoxidase; Prednisolone; Medicine; Cytokine; Methylprednisolone; Pharmacology; Septic shock; Immunosuppression; Subcutaneous injection; Immunology; Sepsis; Internal medicine; Inflammation","score_opus":0.024253987002594356,"score_gpt":0.3307518109519031,"score_spread":0.30649782394930875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2158766590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865544,0.0121705,0.00010890693,0.00019118954,0.0004217216,0.00047707692,0.0000053844096,0.000014684144,0.000056159603],"genre_scores_gemma":[0.9981421,0.0011492409,0.00017448628,0.0002834461,0.00004627789,0.000020786205,0.0000050508047,0.000023039034,0.00015552389],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790347,0.00036382343,0.0010061574,0.00025661854,0.00010592776,0.00036402897],"domain_scores_gemma":[0.9989582,0.00015623977,0.0005818573,0.00013235517,0.0001195876,0.00005181494],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005551562,0.00032438475,0.0008300599,0.0003324182,0.00015862304,0.000015347423,0.00021267765,0.00023882353,0.00005805203],"category_scores_gemma":[0.000008529603,0.00028171742,0.00009565245,0.00016759196,0.00036539842,0.00032731515,0.00011512928,0.0006636234,0.0000067653777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038531364,0.0020867735,0.0011858061,0.000019702482,0.00077081006,0.00004202897,0.019864809,0.0029080044,0.96889174,0.00015782243,0.000020291824,0.00019906723],"study_design_scores_gemma":[0.014267767,0.003320559,0.00104849,0.000034368208,0.00023719622,0.00021464363,0.008431688,0.00057735766,0.9711723,0.00025065208,0.00018689208,0.0002581384],"about_ca_topic_score_codex":0.000046090303,"about_ca_topic_score_gemma":0.000011638904,"teacher_disagreement_score":0.011587772,"about_ca_system_score_codex":0.00013550317,"about_ca_system_score_gemma":0.00013835312,"threshold_uncertainty_score":0.9999635},"labels":[],"label_agreement":null},{"id":"W2159085103","doi":"10.1093/ndt/gfn185","title":"Association between cytokine gene polymorphisms and outcomes in renal transplantation: a meta-analysis of individual patient data","year":2008,"lang":"en","type":"review","venue":"Nephrology Dialysis Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Medicine; Haplotype; Transplantation; Meta-analysis; Internal medicine; Logistic regression; Genotype; Kidney transplantation; Human leukocyte antigen; Oncology; Immunology; Gene; Genetics; Biology","score_opus":0.0622405662913295,"score_gpt":0.2997662769525426,"score_spread":0.23752571066121309,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159085103","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.031729612,0.9583972,0.0003838998,0.00013022676,0.00010912571,0.0008251529,0.00835713,0.00004389267,0.000023754064],"genre_scores_gemma":[0.0072600646,0.91274154,0.00013611127,0.000070216796,0.000022773342,0.00014375562,0.079529494,0.000030184989,0.000065882305],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9940781,0.0022745854,0.0021613627,0.0008247148,0.00023800849,0.00042319935],"domain_scores_gemma":[0.9955098,0.0020044167,0.0016491911,0.0007134972,0.00009294383,0.000030124387],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0009924422,0.00059039355,0.005273118,0.0023243213,0.00014189354,0.000020576914,0.00056314067,0.0013096776,0.00024662123],"category_scores_gemma":[0.00006671558,0.00048943545,0.0013701903,0.0013167445,0.00015809556,0.00032790416,0.000060267786,0.0005496157,0.000029211102],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044856372,0.00027716876,0.004237473,0.0011561097,0.8276216,0.00008007009,0.003932769,0.00007887875,0.0009582479,0.00003025463,0.00014971483,0.16102917],"study_design_scores_gemma":[0.0014805777,0.00017239602,0.022795739,0.000090918,0.92604655,0.0001021992,0.000012778053,0.00000533166,0.000732771,0.000008574416,0.04802525,0.0005269131],"about_ca_topic_score_codex":0.00027726832,"about_ca_topic_score_gemma":0.00048459024,"teacher_disagreement_score":0.16050225,"about_ca_system_score_codex":0.00008678629,"about_ca_system_score_gemma":0.0001751095,"threshold_uncertainty_score":0.9999868},"labels":[],"label_agreement":null},{"id":"W2159272038","doi":"10.4049/jimmunol.1302980","title":"SARM Regulates CCL5 Production in Macrophages by Promoting the Recruitment of Transcription Factors and RNA Polymerase II to the <i>Ccl5</i> Promoter","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"National Institute of Allergy and Infectious Diseases","keywords":"CCL5; Biology; TRIF; Transcription factor; Cell biology; Immune system; Gene; Innate immune system; Toll-like receptor; Immunology; T cell; Genetics; IL-2 receptor","score_opus":0.0134486454196404,"score_gpt":0.231637433934749,"score_spread":0.21818878851510862,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159272038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97584707,0.008515454,0.00005556366,0.014372435,0.0006028147,0.0005711494,0.0000022269455,0.0000069915045,0.000026311693],"genre_scores_gemma":[0.99870807,0.00075227785,0.0000097303155,0.000113496084,0.000041441195,0.000011598633,0.0000051346537,0.0000111512245,0.00034707857],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971824,0.001775364,0.00063884223,0.000111896064,0.00005562447,0.00023583144],"domain_scores_gemma":[0.9988454,0.00025562564,0.0005129213,0.00027786056,0.00009860597,0.000009566321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027875877,0.0001522969,0.0002832287,0.00011968192,0.00032071868,0.000011011897,0.0003228941,0.00013131388,0.00003243891],"category_scores_gemma":[0.00029919654,0.000068445275,0.00007037113,0.0001581794,0.0002878009,0.00013361522,0.00006818616,0.0004614734,0.0000057068432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007888608,0.00007831277,0.0001409605,0.000009665495,0.00014649762,3.083816e-7,0.011506329,0.000010114378,0.9534099,0.00005674891,0.00034691152,0.033505388],"study_design_scores_gemma":[0.0006830188,0.0010128551,0.009602648,0.000078076424,0.00007014697,0.00024553871,0.0012947182,0.000004539792,0.97766685,0.000117189324,0.009150478,0.00007390956],"about_ca_topic_score_codex":0.000105896266,"about_ca_topic_score_gemma":0.000023668184,"teacher_disagreement_score":0.03343148,"about_ca_system_score_codex":0.000036558107,"about_ca_system_score_gemma":0.000037296628,"threshold_uncertainty_score":0.27911174},"labels":[],"label_agreement":null},{"id":"W2159323729","doi":"10.1016/j.jaci.2013.09.038","title":"Pattern recognition receptor-mediated cytokine response in infants across 4 continents⋆","year":2013,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; Wellcome Trust","keywords":"Innate immune system; Immunology; Biology; Pattern recognition receptor; Immune system; Cytokine; Immunity; Acquired immune system; Stimulation; Neuroscience","score_opus":0.020190774855766976,"score_gpt":0.2991853995349722,"score_spread":0.2789946246792052,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159323729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99354047,0.0024709809,0.00005315207,0.0022889902,0.0014220807,0.00014564437,0.00000795174,0.000014732496,0.000055976],"genre_scores_gemma":[0.99224263,0.0067550847,0.000045621644,0.0004595815,0.000073766685,0.000008812386,0.00005369866,0.000014525708,0.00034627737],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9961156,0.0016316527,0.001627059,0.00019457616,0.000046762907,0.0003843292],"domain_scores_gemma":[0.99706405,0.0016149858,0.0007838052,0.000183447,0.00031756872,0.00003612792],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0020770594,0.00017765503,0.00058470876,0.0001931313,0.000091293536,0.000023851702,0.00022101148,0.00066854135,0.0012868064],"category_scores_gemma":[0.0020460016,0.00014519341,0.00015963199,0.00013614024,0.00037870606,0.00037172803,0.00010742422,0.00095534854,0.0009015529],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03154329,0.0008290477,0.023583494,0.000008497354,0.0023154086,0.000062995685,0.0010683957,0.0000016910424,0.62215555,0.000009846126,0.0035312239,0.31489053],"study_design_scores_gemma":[0.010348398,0.0030619565,0.9261852,0.00017618827,0.000023048027,0.00037279155,0.00091983145,0.000010162434,0.011796568,0.0001883331,0.04665781,0.00025969773],"about_ca_topic_score_codex":0.00012099515,"about_ca_topic_score_gemma":0.000050590224,"teacher_disagreement_score":0.9026017,"about_ca_system_score_codex":0.00003352376,"about_ca_system_score_gemma":0.00007990465,"threshold_uncertainty_score":0.9998764},"labels":[],"label_agreement":null},{"id":"W2159545888","doi":"10.4049/jimmunol.0903843","title":"CXCL1 Regulates Pulmonary Host Defense to <i>Klebsiella</i> Infection via CXCL2, CXCL5, NF-κB, and MAPKs","year":2010,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":124,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Heart, Lung, and Blood Institute; National Jewish Health; National Institutes of Health; Louisiana State University; University of Toronto; Flight Attendant Medical Research Institute","keywords":"CXCL1; CXCL2; Chemokine; CXC chemokine receptors; Microbiology; CXCL5; Haematopoiesis; Immunology; Biology; Klebsiella pneumoniae; CXCR4; Chemokine receptor; Cell biology; Inflammation; Stem cell; Escherichia coli","score_opus":0.004683303466002854,"score_gpt":0.20679032353674554,"score_spread":0.2021070200707427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159545888","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9891979,0.0051140157,0.00027061286,0.002331092,0.002220365,0.00020451608,0.0000021399017,0.00003072505,0.0006285941],"genre_scores_gemma":[0.9972126,0.001298433,0.00008555989,0.00032721,0.00012508106,0.0000046798305,0.000007532831,0.000023256529,0.0009156504],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817944,0.0005850999,0.000647029,0.00014879557,0.000055115466,0.00038454993],"domain_scores_gemma":[0.9983947,0.00043773718,0.00047675072,0.00040467383,0.00025376887,0.00003236933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013113567,0.00022387515,0.00039152105,0.0003190041,0.0003480543,0.000022893426,0.00033262858,0.00042855163,0.00028742562],"category_scores_gemma":[0.00028104286,0.0001550815,0.00012052582,0.00020168966,0.00039639906,0.00023193365,0.0001710578,0.0011265706,0.0003756476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018160335,0.000068462476,0.0007998172,0.0000070086357,0.00025233804,0.000013069146,0.0006783999,0.000006545957,0.9785812,0.0002858822,0.0010383346,0.016452897],"study_design_scores_gemma":[0.0010624863,0.0009317988,0.05395126,0.000045769226,0.0001427064,0.011805702,0.00023268937,0.000006075871,0.86556965,0.0008767302,0.06514758,0.00022754201],"about_ca_topic_score_codex":0.00015625723,"about_ca_topic_score_gemma":0.00004702076,"teacher_disagreement_score":0.113011554,"about_ca_system_score_codex":0.00003180621,"about_ca_system_score_gemma":0.00007540446,"threshold_uncertainty_score":0.632404},"labels":[],"label_agreement":null},{"id":"W2159585370","doi":"10.1128/iai.01199-06","title":"Contribution of Phagocytosis and Intracellular Sensing for Cytokine Production by <i>Staphylococcus aureus</i> -Activated Macrophages","year":2006,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Biology; TLR2; NOD1; Phagocytosis; Muramyl dipeptide; TLR4; Peptidoglycan; Microbiology; Cytokine; Lipoteichoic acid; NOD2; Tumor necrosis factor alpha; Cell biology; Staphylococcus aureus; Receptor; Bacteria; Innate immune system; Immunology; Immune system; Signal transduction; Biochemistry","score_opus":0.005565924159064068,"score_gpt":0.21738374743403135,"score_spread":0.2118178232749673,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159585370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933512,0.0024464158,0.0031792829,0.00019583783,0.00029146395,0.00040037767,0.000023696903,0.000059455,0.000052273594],"genre_scores_gemma":[0.99879295,0.00038072714,0.0000325425,0.000016272867,0.000031613607,0.000011603175,0.00041029177,0.000009522647,0.00031445554],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991565,0.00021944434,0.00028573725,0.0001540939,0.000022488139,0.00016173623],"domain_scores_gemma":[0.9993653,0.000093168,0.00019374078,0.00012653838,0.00021214869,0.0000090478],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003695327,0.00013007037,0.00020856982,0.000107381864,0.00033996624,0.000018077715,0.000023357137,0.0001786093,0.000014050561],"category_scores_gemma":[0.0001644226,0.00012515704,0.000043387823,0.00012457438,0.00016890689,0.00019427478,0.000024015237,0.00012675155,0.0000025994907],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004461768,0.00008113058,0.0008299832,0.00003646812,0.000060800296,1.2587623e-7,0.00007063222,0.0000056751555,0.98987424,0.00010412006,0.0013159596,0.007174711],"study_design_scores_gemma":[0.0012327478,0.00020270061,0.009046073,0.00002835929,0.000050153318,0.000022966233,0.00004162882,0.000025130774,0.9621568,0.00014828367,0.026926376,0.000118780255],"about_ca_topic_score_codex":0.0009203987,"about_ca_topic_score_gemma":0.000022777029,"teacher_disagreement_score":0.027717415,"about_ca_system_score_codex":0.000032081534,"about_ca_system_score_gemma":0.000014881164,"threshold_uncertainty_score":0.5103756},"labels":[],"label_agreement":null},{"id":"W2159614117","doi":"10.1034/j.1399-6576.2003.00059.x","title":"Differential release of matrix metalloproteinase‐9 and nitric oxide following infusion of endotoxin to human volunteers","year":2003,"lang":"en","type":"article","venue":"Acta Anaesthesiologica Scandinavica","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Medicine; Lipopolysaccharide; Nitric oxide; Nitrite; Sepsis; Matrix metalloproteinase; Zymography; Pharmacology; Anesthesia; Internal medicine; Immunology; Nitrate; Chemistry","score_opus":0.010111102558695299,"score_gpt":0.2483738591719381,"score_spread":0.2382627566132428,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159614117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981694,0.0008102834,0.000045257108,0.00005912183,0.00005448154,0.00047044846,0.000005289264,0.000033207616,0.00035249043],"genre_scores_gemma":[0.99904865,0.00015525008,0.00025613682,0.000034674973,0.0000043062246,0.000035167624,0.000035042114,0.000014145413,0.0004166379],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826956,0.0004712758,0.0005551769,0.00030662605,0.00006822455,0.00032914284],"domain_scores_gemma":[0.999167,0.0001403059,0.00024942964,0.00033824332,0.000060610713,0.000044394594],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003557979,0.00022701277,0.00056600117,0.00030839693,0.00019502321,0.000008399483,0.0002183753,0.0002663814,0.00031690183],"category_scores_gemma":[0.00044833572,0.00017737114,0.00019156164,0.0002780285,0.0001576585,0.00009435303,0.00008984354,0.00017852033,0.000021030395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035224378,0.000100943274,0.005966852,0.00002487135,0.00009036635,0.0000073452507,0.0001026128,0.00000234154,0.9905612,0.0013687548,0.00009613339,0.0013263563],"study_design_scores_gemma":[0.0011774283,0.0010675567,0.1266933,0.000087064385,0.00011003096,0.000018820216,0.00022085372,0.0000017654593,0.8669921,0.0002444126,0.0031560964,0.00023058665],"about_ca_topic_score_codex":0.0002365926,"about_ca_topic_score_gemma":0.000005862321,"teacher_disagreement_score":0.123569086,"about_ca_system_score_codex":0.00002977338,"about_ca_system_score_gemma":0.00003708198,"threshold_uncertainty_score":0.72329855},"labels":[],"label_agreement":null},{"id":"W2159695093","doi":"10.4049/jimmunol.0803044","title":"Bacterial DNA Activates Endothelial Cells and Promotes Neutrophil Adherence through TLR9 Signaling","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"TLR9; CpG site; CpG Oligodeoxynucleotide; Biology; DNA; Toll-Like Receptor 9; Cell biology; CD18; Innate immune system; Molecular biology; Integrin; Gene; Immune system; Receptor; Immunology; Gene expression; DNA methylation; Biochemistry","score_opus":0.0120834512531173,"score_gpt":0.22881305131439636,"score_spread":0.21672960006127906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159695093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931426,0.004209898,0.00011812331,0.0012137666,0.0010112541,0.00013830063,0.0000041620137,0.000017268796,0.00014461676],"genre_scores_gemma":[0.99792665,0.0014428112,0.000114909155,0.00013115266,0.00014693844,0.0000011357283,0.0000042663755,0.000009837062,0.00022229512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99834263,0.00067929964,0.00053063617,0.000104318104,0.00004015387,0.0003029673],"domain_scores_gemma":[0.99873203,0.00038715257,0.0005458013,0.00019698091,0.0001274808,0.000010526505],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005701101,0.00017781141,0.00036069055,0.000091030866,0.0002355831,0.000023144552,0.00034672476,0.00021428683,0.00025313906],"category_scores_gemma":[0.00011506589,0.000112622816,0.00008895815,0.00008384367,0.00029594006,0.00031128174,0.000054222495,0.0005134639,0.000069492125],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029090794,0.000060272432,0.0000073972424,0.000003485647,0.00019001565,0.0000067676083,0.0018699263,0.000004145347,0.9860292,0.00029394327,0.00017037666,0.008455379],"study_design_scores_gemma":[0.0016596147,0.0020422577,0.0012683512,0.00005299137,0.00007798108,0.0010711118,0.00038671514,7.3424525e-7,0.9842843,0.0014742888,0.007563507,0.000118140066],"about_ca_topic_score_codex":0.00002276628,"about_ca_topic_score_gemma":8.65643e-7,"teacher_disagreement_score":0.008337239,"about_ca_system_score_codex":0.00002654715,"about_ca_system_score_gemma":0.000088024746,"threshold_uncertainty_score":0.45926252},"labels":[],"label_agreement":null},{"id":"W2159816032","doi":"10.1007/s00441-010-1017-1","title":"Insights into the role of Toll-like receptors in modulation of T cell responses","year":2010,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Cell biology; Acquired immune system; Biology; Innate immune system; Antigen-presenting cell; Immune system; T cell; Toll-like receptor; Natural killer T cell; Context (archaeology); Receptor; Immunology","score_opus":0.035328060357111134,"score_gpt":0.3417285118885732,"score_spread":0.3064004515314621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2159816032","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06112725,0.93628,0.0000011315672,0.000014009068,0.00022914553,0.00065242517,0.0000018936486,0.0000054665925,0.0016886957],"genre_scores_gemma":[0.063552886,0.92874086,0.000015246363,8.740091e-7,0.000023637727,0.0000529427,0.000092763854,0.000019837478,0.007500981],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99668545,0.002042117,0.00063253794,0.00026825911,0.00010834741,0.00026327858],"domain_scores_gemma":[0.99784356,0.0012688689,0.000254046,0.00045341955,0.00016283679,0.000017260247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001350299,0.00019042443,0.00074209087,0.00066625053,0.00014704544,0.00001218893,0.00035321355,0.000712161,0.0001249967],"category_scores_gemma":[0.00015362477,0.00012399744,0.00009981459,0.00046092944,0.00045850995,0.000069078946,0.00019758241,0.0010214847,0.00012348109],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001439006,0.0000742793,0.00001103288,0.0019444708,0.000021877164,0.0000015790288,0.0017242968,2.4268246e-7,0.23461093,0.00020791622,0.00009668386,0.76116276],"study_design_scores_gemma":[0.0001930224,0.00014845195,0.000030610594,0.00077650946,0.000027346458,0.0000039316024,0.00025456172,0.0000017447502,0.17159998,0.00023078131,0.82663774,0.00009528039],"about_ca_topic_score_codex":0.00032457578,"about_ca_topic_score_gemma":0.000056261626,"teacher_disagreement_score":0.82654107,"about_ca_system_score_codex":0.000033497025,"about_ca_system_score_gemma":0.0003005357,"threshold_uncertainty_score":0.5492838},"labels":[],"label_agreement":null},{"id":"W2160231689","doi":"10.1128/cvi.00080-06","title":"Immunotargeting with CD154 (CD40 Ligand) Enhances DNA Vaccine Responses in Ducks","year":2006,"lang":"en","type":"article","venue":"Clinical and Vaccine Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canadian Liver Foundation; Canadian Association for the Study of the Liver","keywords":"CD154; CD40; DNA vaccination; Virology; DNA; Biology; Ligand (biochemistry); Immune system; Computational biology; Immunology; Genetics; Immunization; Receptor; In vitro","score_opus":0.011520313764422958,"score_gpt":0.2786205038236141,"score_spread":0.2671001900591911,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160231689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9804474,0.015697878,0.000041795214,0.0021255214,0.00066289847,0.00030998842,0.000004371532,0.00010986753,0.0006002798],"genre_scores_gemma":[0.9937912,0.0019961747,0.0001022946,0.00018626406,0.0001392845,0.000041719602,0.00009607194,0.00003013288,0.0036168492],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9964695,0.0008731101,0.0013697618,0.0005959483,0.00004130534,0.00065035623],"domain_scores_gemma":[0.9976919,0.0013375429,0.00036185197,0.00046822184,0.0001185994,0.000021884205],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012722982,0.00035487523,0.0008529495,0.00029943394,0.00025281217,0.000029286135,0.0002910257,0.0005294901,0.00022908684],"category_scores_gemma":[0.0005253101,0.00026795373,0.000113028815,0.00030886114,0.00023382122,0.00022649083,0.00018227579,0.0008217097,0.00028279895],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.01468301,0.00053402106,0.18941471,0.00002847575,0.00030751803,0.000059920334,0.00017446428,0.0000034745726,0.7748746,0.0010380413,0.0011875698,0.017694198],"study_design_scores_gemma":[0.0077067846,0.001372601,0.77825046,0.00011565891,0.000056451743,0.0002560012,0.00021338042,0.0000040828304,0.18329546,0.00059377536,0.027749805,0.00038556912],"about_ca_topic_score_codex":0.00031647456,"about_ca_topic_score_gemma":0.0002778092,"teacher_disagreement_score":0.59157914,"about_ca_system_score_codex":0.000024332556,"about_ca_system_score_gemma":0.00010630655,"threshold_uncertainty_score":0.9999773},"labels":[],"label_agreement":null},{"id":"W2160591940","doi":"10.4049/jimmunol.169.11.6324","title":"GM-CSF Transgene-Based Adjuvant Allows the Establishment of Protective Mucosal Immunity Following Vaccination with Inactivated <i>Chlamydia trachomatis</i>","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; McMaster University; BC Centre for Disease Control","funders":"","keywords":"Immunology; Immunization; Immune system; Biology; Immunity; Vaccination; Chlamydia trachomatis; Adjuvant; Virology","score_opus":0.010167009603948916,"score_gpt":0.20999726807960173,"score_spread":0.1998302584756528,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160591940","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871168,0.007676153,0.0022446134,0.0015321585,0.00042878036,0.00062528095,0.0000051296906,0.000019979394,0.0003510732],"genre_scores_gemma":[0.9993062,0.00033989825,0.00007645866,0.00009101435,0.000021186812,0.000023895069,0.000015493768,0.00002228519,0.00010354135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99636614,0.0021746866,0.0008590453,0.00011922352,0.00013065057,0.00035025785],"domain_scores_gemma":[0.9972682,0.00078767806,0.0010914004,0.00045144482,0.0003874174,0.000013877797],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017521523,0.000250284,0.0005337648,0.00024557867,0.00041004416,0.000018241317,0.00067160564,0.00025249575,0.00036483203],"category_scores_gemma":[0.00023495773,0.00013233516,0.0002305636,0.00038291214,0.00025391096,0.00038185544,0.000041418152,0.001029059,0.000021437045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003749223,0.00034725445,0.00029407215,0.000018123654,0.0012498865,0.000009647431,0.004959957,0.0003144804,0.9695308,0.00007715347,0.00019587962,0.01925353],"study_design_scores_gemma":[0.0058202837,0.0017750919,0.060032833,0.00013232102,0.00042723073,0.00057034835,0.0027299072,0.000092943745,0.9270248,0.00011525063,0.0010756478,0.0002033618],"about_ca_topic_score_codex":0.00018638451,"about_ca_topic_score_gemma":0.000036081707,"teacher_disagreement_score":0.05973876,"about_ca_system_score_codex":0.00012980854,"about_ca_system_score_gemma":0.00014066449,"threshold_uncertainty_score":0.53964716},"labels":[],"label_agreement":null},{"id":"W2160603335","doi":"10.4049/jimmunol.1102696","title":"The Importance of Adjuvant Formulation in the Development of a Tuberculosis Vaccine","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":107,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Research & Development Corporation","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Adjuvant; Alum; Tuberculosis vaccines; Immune system; Emulsion; Immunology; Mycobacterium tuberculosis; Lipid A; Medicine; Tuberculosis; Pharmacology; Biology; Chemistry; Biochemistry; Lipopolysaccharide","score_opus":0.012208934343331543,"score_gpt":0.24962509812067307,"score_spread":0.23741616377734154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2160603335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97357583,0.024734765,0.00012168691,0.0009989955,0.00030782374,0.00013063454,5.109839e-7,0.000001714999,0.00012806183],"genre_scores_gemma":[0.998975,0.0008547633,0.0000581527,0.00003763443,0.000018269751,0.0000035360304,0.0000031566792,0.0000047285976,0.00004478073],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99805146,0.00068692706,0.0009538296,0.000032869804,0.000054126533,0.00022079998],"domain_scores_gemma":[0.9979656,0.00075530243,0.0008937187,0.0002422107,0.00013916136,0.0000040387963],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003616171,0.00008682077,0.00024447328,0.00009954301,0.00014760028,0.000002242379,0.00041828555,0.000103652405,0.00004275265],"category_scores_gemma":[0.00022078371,0.00003733998,0.000074504256,0.00015381463,0.0000962903,0.00013855798,0.000054445765,0.00030105741,0.000012129545],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002141906,0.00014670359,0.017379066,0.000011465587,0.00044417774,4.115814e-7,0.01785382,0.00001320618,0.936995,0.0018446931,0.00022304228,0.022946462],"study_design_scores_gemma":[0.001103831,0.00024923278,0.5926386,0.000047328424,0.00006813491,0.00029861665,0.0041758614,0.0000025515367,0.39343622,0.0002658963,0.007655714,0.00005797833],"about_ca_topic_score_codex":0.000012177379,"about_ca_topic_score_gemma":0.00003876848,"teacher_disagreement_score":0.57525957,"about_ca_system_score_codex":0.000036082107,"about_ca_system_score_gemma":0.00008905896,"threshold_uncertainty_score":0.15226802},"labels":[],"label_agreement":null},{"id":"W2161029954","doi":"10.1152/ajpheart.2000.278.3.h853","title":"LPS tolerance in human endothelial cells: reduced PMN adhesion, E-selectin expression, and NF-κB mobilization","year":2000,"lang":"en","type":"article","venue":"American Journal of Physiology-Heart and Circulatory Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":74,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"","keywords":"Cell adhesion molecule; Lipopolysaccharide; Umbilical vein; Tumor necrosis factor alpha; E-selectin; Endothelial stem cell; Cell biology; Stimulation; Cytokine; Cell adhesion; Endothelial activation; Chemistry; Adhesion; CD14; Inflammation; Immunology; Molecular biology; Biology; Endocrinology; In vitro; Biochemistry; Flow cytometry","score_opus":0.006922859513515286,"score_gpt":0.2302551472883094,"score_spread":0.2233322877747941,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161029954","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9980753,0.0013454099,0.000001306908,0.00008232042,0.00025966566,0.0001575412,0.00000395694,0.00002035572,0.00005413924],"genre_scores_gemma":[0.998818,0.00051790365,0.000048946582,0.00030340793,0.00014156064,0.000012456121,0.000018693561,0.000021962667,0.00011707954],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997578,0.000867774,0.00069828704,0.00040620728,0.00005051786,0.00039918322],"domain_scores_gemma":[0.9989832,0.00017587842,0.00042600418,0.0002523336,0.00011101975,0.00005157081],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036106684,0.00025835936,0.0007580482,0.00022370463,0.0002411299,0.000009331239,0.0001676666,0.00021262962,0.00041516192],"category_scores_gemma":[0.0000355612,0.00022394255,0.00011191432,0.0002120847,0.0008118213,0.0002172111,0.000039156006,0.00048098352,0.000035653822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076273346,0.00011796647,0.0005052285,0.000018196793,0.00005010366,5.3818803e-7,0.00068978546,0.0001556805,0.995617,0.000045066194,0.00031733664,0.001720389],"study_design_scores_gemma":[0.0016391575,0.001005566,0.35783044,0.00008383809,0.000028380551,0.00016074908,0.00039741033,0.000020788786,0.6338951,0.0006102424,0.0040767146,0.0002516236],"about_ca_topic_score_codex":0.000054507782,"about_ca_topic_score_gemma":0.0000032855041,"teacher_disagreement_score":0.3617219,"about_ca_system_score_codex":0.000034320565,"about_ca_system_score_gemma":0.00008555755,"threshold_uncertainty_score":0.9132112},"labels":[],"label_agreement":null},{"id":"W2161035695","doi":"10.1086/590431","title":"A Functional Toll‐Like Receptor 8 Variant Is Associated with HIV Disease Restriction","year":2008,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":120,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"Robert Koch Institut","keywords":"Biology; Immunology; Immune system; Innate immune system; Population; Toll-like receptor; Virus; Virology; Genotype; Receptor; Gene; Genetics; Medicine","score_opus":0.00871175158127363,"score_gpt":0.1955605802553104,"score_spread":0.18684882867403677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161035695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952054,0.002274978,0.000706215,0.00069068384,0.0007068258,0.00013007807,0.000034180837,0.000047682322,0.00020397358],"genre_scores_gemma":[0.9967848,0.0009994002,0.0000024228013,0.00029510353,0.00011426869,0.0000059311405,0.000058898724,0.000013978906,0.0017251659],"study_design_codex":"not_applicable","study_design_gemma":"observational","domain_scores_codex":[0.9987719,0.00048511376,0.0003499575,0.00008893742,0.000114027665,0.00019006389],"domain_scores_gemma":[0.9986672,0.00033424946,0.00046251906,0.00017054587,0.00031342765,0.00005208823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026260607,0.00014284217,0.0002082844,0.00015977683,0.0005381125,0.0000135884175,0.00011647381,0.00007841742,0.0008154339],"category_scores_gemma":[0.00035514298,0.000085623265,0.00014263106,0.00022095737,0.00017736544,0.000256305,0.000022153461,0.0002649735,0.00019391383],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.03304084,0.0031312574,0.19797988,0.000044981993,0.004742638,0.00047850548,0.0025440909,0.002102631,0.06891865,0.00054953684,0.68472373,0.0017432589],"study_design_scores_gemma":[0.0073102787,0.0015805537,0.95690286,0.00024942818,0.0012635129,0.003787598,0.00029455812,0.000025358873,0.0055480157,0.00046810086,0.022156904,0.0004128496],"about_ca_topic_score_codex":0.00001534529,"about_ca_topic_score_gemma":0.0000024006338,"teacher_disagreement_score":0.75892293,"about_ca_system_score_codex":0.000119151526,"about_ca_system_score_gemma":0.00036901873,"threshold_uncertainty_score":0.89284295},"labels":[],"label_agreement":null},{"id":"W2161583399","doi":"10.4049/jimmunol.1102991","title":"<i>Runx1</i> Deficiency in CD4+ T Cells Causes Fatal Autoimmune Inflammatory Lung Disease Due to Spontaneous Hyperactivation of Cells","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"RUNX1; Biology; Immunology; Immune system; Cytokine; Transcription factor; Autoimmunity; Cell biology; Cancer research; Gene; Genetics","score_opus":0.0066018044781931675,"score_gpt":0.2185111115205715,"score_spread":0.21190930704237834,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2161583399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98341876,0.013920873,0.00021224392,0.00032080468,0.0017020694,0.00028827303,0.000007597596,0.000013976474,0.000115423296],"genre_scores_gemma":[0.9990221,0.00045564485,0.000037743433,0.00009191874,0.000052740997,0.000005970709,0.000009282664,0.00002102456,0.000303533],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972736,0.0009626271,0.001054654,0.0001072695,0.00009303034,0.00050881464],"domain_scores_gemma":[0.99792415,0.0006578398,0.000781401,0.00040212425,0.00019743956,0.00003705785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001468156,0.00021831787,0.00049045123,0.00046057915,0.00013980373,0.000007949602,0.0005012469,0.00020688637,0.00018799784],"category_scores_gemma":[0.0002643697,0.00016035057,0.00013561377,0.00027268444,0.0002254997,0.0004268438,0.00014297011,0.00058884843,0.00018509822],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034670925,0.0002451357,0.00084996276,0.000026329784,0.0001253662,0.000070577946,0.0029277054,0.00037396848,0.98980117,0.00021116834,0.00031834576,0.0015832045],"study_design_scores_gemma":[0.0012381943,0.00030626883,0.102914296,0.00012288305,0.00012231755,0.0021536055,0.0009824213,0.0000069734965,0.88712734,0.00003484107,0.004787993,0.00020286387],"about_ca_topic_score_codex":0.00007276387,"about_ca_topic_score_gemma":0.000011140215,"teacher_disagreement_score":0.1026738,"about_ca_system_score_codex":0.00014793202,"about_ca_system_score_gemma":0.00022553385,"threshold_uncertainty_score":0.6538906},"labels":[],"label_agreement":null},{"id":"W2162440799","doi":"10.4049/jimmunol.177.11.8008","title":"The IFN-Independent Response to Virus Particle Entry Provides a First Line of Antiviral Defense That Is Independent of TLRs and Retinoic Acid-Inducible Gene I","year":2006,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":108,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"McMaster University","keywords":"IRF3; Innate immune system; Biology; Interferon; Immune system; RIG-I; DNA virus; Pattern recognition receptor; Cell biology; Virology; Gene; Immunology; Genetics; Genome","score_opus":0.01165191766856267,"score_gpt":0.2296255357429352,"score_spread":0.21797361807437254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162440799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9781301,0.018120807,0.000117796546,0.0029357893,0.00035048954,0.0002756947,0.000010822515,0.0000074327186,0.000051048733],"genre_scores_gemma":[0.9971091,0.0021166613,0.00003201263,0.00008282258,0.000030547497,0.0000055878,0.0000019951376,0.000015613552,0.0006056192],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971124,0.0013012829,0.0009365293,0.0001445498,0.00012609792,0.00037915382],"domain_scores_gemma":[0.9973771,0.00093396363,0.00095020735,0.00046566632,0.00025538777,0.000017684268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0029526143,0.00019180648,0.0004484319,0.00017713444,0.0002990327,0.00001692671,0.00046795534,0.00023842002,0.00004892874],"category_scores_gemma":[0.00041277974,0.000114259055,0.00014239491,0.00018575783,0.00049160863,0.00011976455,0.00022044209,0.00045231727,0.000030431765],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020804454,0.00014432363,0.0015699592,0.000011713656,0.00037203098,0.000010876181,0.0020029088,0.000025289884,0.97077763,0.00011646998,0.0003585663,0.0038058038],"study_design_scores_gemma":[0.0019110439,0.001554252,0.04700453,0.00006888276,0.00013493786,0.00066100917,0.0010147436,0.0000048667584,0.9430785,0.0002691522,0.004190653,0.00010742285],"about_ca_topic_score_codex":0.00027182102,"about_ca_topic_score_gemma":0.00011343431,"teacher_disagreement_score":0.045434568,"about_ca_system_score_codex":0.00005639915,"about_ca_system_score_gemma":0.00016484623,"threshold_uncertainty_score":0.4659349},"labels":[],"label_agreement":null},{"id":"W2162813051","doi":"10.1007/s10522-006-9067-1","title":"GM-CSF activates the Jak/STAT pathway to rescue polymorphonuclear neutrophils from spontaneous apoptosis in young but not elderly individuals","year":2006,"lang":"en","type":"article","venue":"Biogerontology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":96,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health and Social Services Centre University Institute of Geriatrics of Sherbrooke; Université de Sherbrooke","funders":"","keywords":"STAT protein; STAT5; Janus kinase; Granulocyte colony-stimulating factor; Granulocyte; STAT3; Granulocyte macrophage colony-stimulating factor; Apoptosis; Janus kinase 2; Immunology; Internal medicine; JAK-STAT signaling pathway; Medicine; Endocrinology; Signal transduction; Proinflammatory cytokine; Haematopoiesis; Granulocyte colony-stimulating factor receptor; Biology; Cytokine; Receptor; Inflammation; Cell biology; Chemotherapy; Biochemistry; Stem cell","score_opus":0.009094000131519528,"score_gpt":0.2106015671518303,"score_spread":0.20150756702031075,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162813051","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99250305,0.0012508663,0.00002600478,0.0032306402,0.00091788813,0.0005181151,0.00013405108,0.00008846033,0.0013309527],"genre_scores_gemma":[0.9972795,0.00005669657,0.00011630528,0.00051887415,0.00012388163,0.000080173406,0.00040074505,0.0000354547,0.0013883349],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971565,0.00080009556,0.00065406295,0.0005343424,0.000075053205,0.0007799458],"domain_scores_gemma":[0.99862176,0.000499928,0.0001779641,0.00060798693,0.00006119169,0.00003114319],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00037803338,0.00034379298,0.0005260759,0.00028949088,0.00028505005,0.00005282718,0.00054311944,0.0005980552,0.00073278113],"category_scores_gemma":[0.00014524632,0.0002687325,0.00013669535,0.00023011476,0.00022870646,0.00016763623,0.00015965916,0.00041536914,0.0011792532],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013858915,0.000112715345,0.0040652906,0.000003739456,0.00010870069,0.00006933101,0.0009217737,0.000012080891,0.9844336,0.0010684298,0.0020764458,0.005742028],"study_design_scores_gemma":[0.0013324074,0.00044390926,0.16065536,0.000028863971,0.000037899987,0.0003931806,0.0005787744,0.000001887706,0.8045328,0.00023856373,0.03139514,0.00036118625],"about_ca_topic_score_codex":0.032239646,"about_ca_topic_score_gemma":0.0075524817,"teacher_disagreement_score":0.17990075,"about_ca_system_score_codex":0.0001398132,"about_ca_system_score_gemma":0.00009452117,"threshold_uncertainty_score":0.9999765},"labels":[],"label_agreement":null},{"id":"W2162883372","doi":"10.1002/pros.20694","title":"<i>TNF</i> polymorphisms and prostate cancer risk","year":2008,"lang":"en","type":"article","venue":"The Prostate","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"National Cancer Institute; National Institutes of Health","keywords":"Prostate cancer; Single-nucleotide polymorphism; Medicine; Oncology; Internal medicine; Cohort; Odds ratio; Prostate; Case-control study; Haplotype; Cancer; SNP; Cohort study; Risk factor; Biology; Genotype; Genetics","score_opus":0.008215493053257914,"score_gpt":0.21397945889884212,"score_spread":0.2057639658455842,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162883372","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9843687,0.012476855,0.0000116744795,0.0018685356,0.00026295576,0.000353964,0.000035749337,0.00006602699,0.00055553997],"genre_scores_gemma":[0.97115815,0.010136063,0.000013348649,0.00026782777,0.000022209377,0.00007494588,0.000024735635,0.000014725483,0.01828799],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991483,0.00020948985,0.00018266932,0.00015793554,0.00002726988,0.00027435535],"domain_scores_gemma":[0.9995395,0.00007477198,0.00011975779,0.00021428026,0.00003919303,0.000012523334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002600496,0.00012439664,0.00013583539,0.00003979858,0.00056550873,0.000011604499,0.00010805838,0.000069064445,0.00012562507],"category_scores_gemma":[0.00003222684,0.00007810703,0.000035414287,0.000088581975,0.00035861233,0.00011285566,0.000069357964,0.0002279672,0.00035017534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015855251,0.000051587605,0.022061499,0.00001659282,0.00022792864,0.000016655638,0.019004477,0.000024491374,0.87780076,0.00037685182,0.011736569,0.06709708],"study_design_scores_gemma":[0.0022855492,0.00018610715,0.08723338,0.00003952192,0.00008160481,0.00039407652,0.00028147627,0.0000151337035,0.68404555,0.0007066407,0.22440438,0.00032656634],"about_ca_topic_score_codex":0.00055072655,"about_ca_topic_score_gemma":0.00001741365,"teacher_disagreement_score":0.21266781,"about_ca_system_score_codex":0.000014978262,"about_ca_system_score_gemma":0.00005723679,"threshold_uncertainty_score":0.45009124},"labels":[],"label_agreement":null},{"id":"W2162972188","doi":"10.1139/o10-014","title":"Characterization of LRRFIP1","year":2010,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Phosphorylation; Biology; Serine; Lipopolysaccharide; Cell biology; Signal transduction; Receptor; Intracellular; Molecular biology; Biochemistry; Immunology","score_opus":0.0035782875104150252,"score_gpt":0.1934824542563216,"score_spread":0.18990416674590657,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162972188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962893,0.00029916636,0.000028167424,0.00006427394,0.00026940042,0.0000424535,0.000012472696,0.0000151638405,0.0029795733],"genre_scores_gemma":[0.99750173,0.00008564902,0.000020968366,0.000024888326,0.000027811087,0.00000437942,0.00037590752,0.000003267153,0.001955394],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995939,0.000029176032,0.00014677017,0.00011981699,0.0000057326765,0.00010456663],"domain_scores_gemma":[0.9997155,0.000027602624,0.00008847452,0.00012813728,0.000031902106,0.00000837491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009197174,0.00006893395,0.000105891806,0.000022642736,0.000044425917,0.0000022570662,0.00006559557,0.00029983398,0.00034840047],"category_scores_gemma":[0.000026390753,0.00006010648,0.000024471288,0.000033516015,0.0001742624,0.000021657763,0.00002953022,0.00012909705,0.000034779147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006043939,0.00002445523,0.0007640132,0.000021195667,0.000010248464,1.5063061e-7,0.00003842371,5.3713944e-9,0.99377614,0.00032396283,0.00002449592,0.0049564666],"study_design_scores_gemma":[0.0002793067,0.00004077451,0.0018137732,0.0000029235832,0.0000073606934,0.000012170284,0.000017978162,7.558317e-7,0.9603322,0.00003437012,0.037395187,0.00006317126],"about_ca_topic_score_codex":0.0000051788893,"about_ca_topic_score_gemma":3.5214197e-7,"teacher_disagreement_score":0.037370693,"about_ca_system_score_codex":0.000001725808,"about_ca_system_score_gemma":0.00002278343,"threshold_uncertainty_score":0.3814741},"labels":[],"label_agreement":null},{"id":"W2162983390","doi":"10.1378/chest.119.6.1724","title":"BAL Induces an Increase in Peripheral Blood Neutrophils and Cytokine Levels in Healthy Volunteers and Patients With Pneumonia","year":2001,"lang":"en","type":"article","venue":"CHEST Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Medicine; Volunteer; Saline; Cytokine; Granulocyte colony-stimulating factor; Bronchus; Pneumonia; Gastroenterology; Internal medicine; Tumor necrosis factor alpha; Peripheral; Interleukin 8; Granulocyte; Bronchoalveolar lavage; Immunology; Respiratory disease; Lung","score_opus":0.010385657960718988,"score_gpt":0.2277578358741958,"score_spread":0.2173721779134768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2162983390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99848396,0.000935174,0.000004124846,0.00033389055,0.00007690716,0.00011547643,0.0000036611482,0.000007273957,0.00003954697],"genre_scores_gemma":[0.9994057,0.00034137035,0.000041039453,0.0001167682,0.000031022413,0.0000039491197,0.000016097865,0.000010150945,0.00003392663],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9989703,0.00024460105,0.00028630212,0.00015566847,0.000035121935,0.0003079895],"domain_scores_gemma":[0.99969333,0.00003247126,0.00009886217,0.0000815671,0.00004464575,0.000049140577],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003387142,0.00013301343,0.00020641457,0.00019875965,0.00014029512,0.00003845224,0.000072734605,0.00013391663,0.00005884473],"category_scores_gemma":[0.000039205606,0.00010650465,0.000013575218,0.000117264884,0.00010985882,0.00040140282,0.00002847796,0.00045255278,0.0000031671652],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034369272,0.0003576964,0.7943716,0.000019471972,0.000044992255,0.00010770064,0.002009392,0.00001312115,0.19122037,0.000022424027,0.000007193964,0.008389088],"study_design_scores_gemma":[0.006029473,0.0011330316,0.9891799,0.000060692248,0.000013725827,0.00081289385,0.00030062636,0.000007665984,0.0017946326,0.00002554241,0.0005123373,0.00012948281],"about_ca_topic_score_codex":0.00019206484,"about_ca_topic_score_gemma":0.00020987068,"teacher_disagreement_score":0.19480827,"about_ca_system_score_codex":0.00004719256,"about_ca_system_score_gemma":0.00008377978,"threshold_uncertainty_score":0.4343134},"labels":[],"label_agreement":null},{"id":"W2164010813","doi":"10.1086/432000","title":"Lipopolysaccharide: An Endotoxin or an Exogenous Hormone?","year":2005,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":85,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Lipopolysaccharide; Sepsis; Endogeny; Hormone; Receptor; Pathogenesis; Immunology; Medicine; Homeostasis; Biology; Cell biology; Microbiology; Endocrinology; Internal medicine","score_opus":0.11365976234597412,"score_gpt":0.4319449545448219,"score_spread":0.31828519219884777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164010813","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0031548988,0.99271375,0.00002139166,0.000011453868,0.0017930742,0.0011823548,0.00020502294,0.000631465,0.0002865757],"genre_scores_gemma":[0.0013390282,0.99248654,0.0000063031102,0.00023100493,0.0012019478,0.00033403392,0.002220375,0.00012500846,0.002055784],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9931652,0.0029895285,0.0020929254,0.0009775192,0.000078316436,0.0006965339],"domain_scores_gemma":[0.99596786,0.0014470355,0.0008956266,0.0013367156,0.00013039999,0.00022236131],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00074521225,0.00076505943,0.002657137,0.0003279117,0.00043356945,0.000110347704,0.0006867012,0.0015932976,0.0020628595],"category_scores_gemma":[0.0012611487,0.00055999495,0.0012674792,0.00023128606,0.00046104696,0.0005104275,0.00017657831,0.00114606,0.004334621],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018732739,0.0017687456,0.00005040469,0.00051984505,0.0005824921,0.000047125297,0.000028102975,5.5309005e-7,0.00004827015,0.0001226498,0.0017546421,0.99488986],"study_design_scores_gemma":[0.001047964,0.0022733745,0.00019943946,0.0007212356,0.0021935606,0.00022708953,0.000020341033,0.000001320952,0.000022581857,0.00005215047,0.9924901,0.0007508554],"about_ca_topic_score_codex":0.0000535473,"about_ca_topic_score_gemma":0.000078134166,"teacher_disagreement_score":0.994139,"about_ca_system_score_codex":0.0001422511,"about_ca_system_score_gemma":0.0010790102,"threshold_uncertainty_score":0.9997029},"labels":[],"label_agreement":null},{"id":"W2164840648","doi":"10.1016/j.crohns.2014.04.004","title":"Novel de novo mutations of the interleukin-10 receptor gene lead to infantile onset inflammatory bowel disease","year":2014,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto","funders":"","keywords":"Missense mutation; Nonsense mutation; Medicine; Mutation; Peripheral blood mononuclear cell; Exon; Interleukin 12 receptor, beta 1 subunit; Inflammatory bowel disease; Immunology; Allele; Interleukin 10; Cytokine; Genetics; Disease; Gene; Biology; Internal medicine","score_opus":0.006357585158441707,"score_gpt":0.22816780032207118,"score_spread":0.22181021516362948,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2164840648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99714535,0.0003592132,0.0009106002,0.00089230004,0.00034977772,0.00010279897,0.00003621573,0.0000045594447,0.00019919066],"genre_scores_gemma":[0.9981047,0.000056124412,0.0001813652,0.0002574511,0.000059394697,0.0000053196977,0.0000069525363,0.000007861902,0.0013208397],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99911153,0.00018821924,0.00042077078,0.00007098605,0.00004826034,0.00016020995],"domain_scores_gemma":[0.9991653,0.00014675265,0.00029450213,0.00014923487,0.0002002569,0.0000439525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043698022,0.00008741947,0.00017320053,0.000108646156,0.00013931938,0.00001950259,0.00016581127,0.000078620564,0.00020598683],"category_scores_gemma":[0.00041047376,0.000063907944,0.00010731784,0.00006837983,0.00013656603,0.00011180618,0.000055276076,0.00018223916,0.00002990623],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009762257,0.00023883319,0.00973514,0.000113933995,0.0003093298,0.000015843549,0.0040843706,0.00012652986,0.9420622,0.0023601546,0.012067116,0.019124271],"study_design_scores_gemma":[0.000971187,0.0001997558,0.74553657,0.0001551578,0.00005763998,0.0002852675,0.0002127892,0.000010830262,0.1759434,0.00019610598,0.0763363,0.0000949808],"about_ca_topic_score_codex":0.000018894412,"about_ca_topic_score_gemma":0.0000127689,"teacher_disagreement_score":0.7661188,"about_ca_system_score_codex":0.000031275937,"about_ca_system_score_gemma":0.00019319715,"threshold_uncertainty_score":0.26060903},"labels":[],"label_agreement":null},{"id":"W2165026201","doi":"10.1159/000437330","title":"TNFAIP2 Inhibits Early TNFa-Induced NF-&amp;#954;B Signaling and Decreases Survival in Septic Shock Patients","year":2015,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Septic shock; Tumor necrosis factor alpha; Sepsis; Medicine; Cytokine; Gene; Minor allele frequency; Gene expression; Immunology; Downregulation and upregulation; Biology; Cohort; Internal medicine; Allele; Allele frequency; Genetics","score_opus":0.035504740215739336,"score_gpt":0.26501417619897816,"score_spread":0.2295094359832388,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165026201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974724,0.0012841691,0.000024534489,0.0000960143,0.00068799633,0.00013272496,0.000002587574,0.000013575848,0.00028596813],"genre_scores_gemma":[0.9995986,0.00008260902,0.00006921355,0.000048999464,0.000034364377,0.000002122768,0.000023919974,0.000016876484,0.00012325203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975838,0.0010558221,0.00082291116,0.000115517694,0.00011511875,0.000306815],"domain_scores_gemma":[0.9984195,0.00028262884,0.00052594766,0.00020062324,0.0005062403,0.000065025866],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017525764,0.00019669581,0.00043642582,0.0004000451,0.00013209484,0.000044208435,0.00023481736,0.00024190028,0.000051208262],"category_scores_gemma":[0.0011643213,0.00016789611,0.000093580085,0.00024017938,0.000091419526,0.0005302631,0.00012466076,0.00080099236,0.00006705269],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002713602,0.00049734896,0.08087133,0.000027497606,0.00023588723,0.000018760673,0.004947445,0.00002954738,0.90241593,0.000064352964,0.00024949858,0.007928768],"study_design_scores_gemma":[0.010749606,0.0019146305,0.41589236,0.0005594796,0.00010659207,0.00026202726,0.0019770027,0.000006646735,0.5641374,0.0005649845,0.0033184781,0.00051077764],"about_ca_topic_score_codex":0.00041970814,"about_ca_topic_score_gemma":0.00005334081,"teacher_disagreement_score":0.33827853,"about_ca_system_score_codex":0.000117741045,"about_ca_system_score_gemma":0.00020573319,"threshold_uncertainty_score":0.6846605},"labels":[],"label_agreement":null},{"id":"W2165068682","doi":"10.1128/aac.47.12.3846-3852.2003","title":"Randomized, Single-Blind, Placebo-Controlled Studyof Topical Application of the Immune Response ModulatorResiquimod in HealthyAdults","year":2003,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Agonist; Placebo; Randomization; Medicine; Internal medicine; Gastroenterology; Antagonist; Dose-ranging study; Randomized controlled trial; Endocrinology; Receptor; Pathology; Double blind","score_opus":0.010712509660352297,"score_gpt":0.24968687274575577,"score_spread":0.23897436308540346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165068682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99503946,0.00042899817,0.0002591057,0.0021624712,0.00024238027,0.0016895917,0.0000024970066,0.000014659441,0.00016084648],"genre_scores_gemma":[0.9981702,0.0002879107,0.000039079267,0.0007646109,0.000011316478,0.00006114182,0.0000089508185,0.0000149015705,0.0006418716],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.9974847,0.0013285519,0.00066076923,0.00023461998,0.000047124144,0.00024424397],"domain_scores_gemma":[0.9990465,0.00030143975,0.0002842198,0.00030144778,0.000053191834,0.000013219904],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001286274,0.00017918283,0.0006445491,0.000103017934,0.00012958718,0.000013656952,0.00015945,0.00020954221,0.000061640574],"category_scores_gemma":[0.00018104792,0.00012113497,0.00018367435,0.00015550973,0.00022887049,0.00006510443,0.000028564373,0.00018007112,0.000011810301],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.55077046,0.0003936049,0.0013203812,0.000021311973,0.0001586618,5.300638e-7,0.0010143243,0.00001567262,0.4424222,0.0006945779,0.00022346275,0.0029647667],"study_design_scores_gemma":[0.5723465,0.0001497126,0.014925269,0.000069579706,0.00004202964,0.000021620379,0.00011440574,0.00006988081,0.40343758,0.00013498643,0.008490617,0.00019779228],"about_ca_topic_score_codex":0.000113528215,"about_ca_topic_score_gemma":0.000014327197,"teacher_disagreement_score":0.038984627,"about_ca_system_score_codex":0.00003658134,"about_ca_system_score_gemma":0.000059418835,"threshold_uncertainty_score":0.4939741},"labels":[],"label_agreement":null},{"id":"W2165181124","doi":"10.1200/jco.2007.12.5807","title":"Randomized Phase II Trial of a Toll-Like Receptor 9 Agonist Oligodeoxynucleotide, PF-3512676, in Combination With First-Line Taxane Plus Platinum Chemotherapy for Advanced-Stage Non–Small-Cell Lung Cancer","year":2008,"lang":"en","type":"article","venue":"Journal of Clinical Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":169,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"McGill University; Pfizer Pharmaceuticals; American Society of Clinical Oncology; Pfizer","keywords":"Medicine; Taxane; Chemotherapy; Internal medicine; Neutropenia; Clinical endpoint; Lung cancer; Oncology; Phases of clinical research; Gastroenterology; Surgery; Cancer; Urology; Breast cancer; Randomized controlled trial","score_opus":0.0432886893044225,"score_gpt":0.382074831658081,"score_spread":0.3387861423536585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165181124","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98876256,0.0012137761,0.0027525357,0.0026876507,0.0022564286,0.0020208333,0.000021280195,0.000011121875,0.00027379193],"genre_scores_gemma":[0.98483485,0.0075928904,0.002409691,0.00046513334,0.00030201866,0.00016580128,0.000058171685,0.000036245412,0.004135185],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99478173,0.00096596044,0.0035509125,0.00025145116,0.000107699496,0.0003422302],"domain_scores_gemma":[0.98996955,0.004865504,0.004372136,0.00021308807,0.00052159984,0.000058108868],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004146063,0.00025232675,0.0027018392,0.00025132383,0.0001813113,0.000005382371,0.00028539685,0.0006624674,0.00030959092],"category_scores_gemma":[0.0018877683,0.0001843744,0.00061108347,0.00017789532,0.0004976434,0.00020168922,0.000042067226,0.00071323995,0.000004482183],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.9545649,0.0042449934,0.00012952478,0.000076233875,0.0005677472,0.000028435956,0.00085819303,0.0005828069,0.019233892,0.000051888637,0.0023429482,0.017318383],"study_design_scores_gemma":[0.9024838,0.027983915,0.00012854721,0.00017202138,0.00023742436,0.000050937684,0.00011110092,0.0005709468,0.026193004,0.000029085366,0.04184314,0.00019608342],"about_ca_topic_score_codex":0.00007387407,"about_ca_topic_score_gemma":0.00021274034,"teacher_disagreement_score":0.052081157,"about_ca_system_score_codex":0.00020698426,"about_ca_system_score_gemma":0.0020297908,"threshold_uncertainty_score":0.7518569},"labels":[],"label_agreement":null},{"id":"W2165413779","doi":"10.4049/jimmunol.175.7.4320","title":"TLR Signaling Tailors Innate Immune Responses in Human Microglia and Astrocytes","year":2005,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":730,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Microglia; TLR2; Proinflammatory cytokine; TLR3; Innate immune system; Cell biology; TLR4; Biology; Secretion; Toll-like receptor; Inflammation; Immunology; Signal transduction; Immune system; Endocrinology","score_opus":0.010157824056822914,"score_gpt":0.24398046038119334,"score_spread":0.23382263632437042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165413779","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.92430025,0.0732925,0.000037742753,0.0019381333,0.00024006233,0.000100873716,0.0000012703931,0.000012145391,0.00007699827],"genre_scores_gemma":[0.9964964,0.0021039525,0.00009143972,0.00016607273,0.00005093887,0.0000023313107,0.0000041430053,0.000014884936,0.0010698419],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99749064,0.0011497613,0.0008712498,0.000100885416,0.000039640025,0.0003478018],"domain_scores_gemma":[0.99858147,0.00049950206,0.00056090567,0.00022245252,0.00012465754,0.000011024041],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001881484,0.00017580252,0.00040377618,0.0004280247,0.00023915393,0.000016085627,0.00038016765,0.0002193503,0.0002601322],"category_scores_gemma":[0.000213687,0.00012275843,0.00008618256,0.00015013432,0.0004248998,0.0003016302,0.00011593686,0.00077143166,0.0000730271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027870145,0.000055442462,0.0003278445,0.000004361337,0.0002001778,0.000009252263,0.0018217003,0.000036467038,0.9881618,0.00021100731,0.00019641034,0.0061885146],"study_design_scores_gemma":[0.0023436495,0.0006394321,0.017371735,0.0000829775,0.000054531854,0.0014652023,0.0011537469,0.0000023385383,0.9516487,0.000095420604,0.025009722,0.0001325136],"about_ca_topic_score_codex":0.000049564496,"about_ca_topic_score_gemma":0.000013035196,"teacher_disagreement_score":0.072196126,"about_ca_system_score_codex":0.000069998845,"about_ca_system_score_gemma":0.00007630049,"threshold_uncertainty_score":0.5005944},"labels":[],"label_agreement":null},{"id":"W2165586955","doi":"10.1186/1471-2164-8-421","title":"Identification of single nucleotide polymorphisms in bovine CARD15 and their associations with health and production traits in Canadian Holsteins","year":2007,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Biology; Single-nucleotide polymorphism; Identification (biology); Genetics; Computational biology; Genotype; Gene","score_opus":0.013962631713472957,"score_gpt":0.2192685604955071,"score_spread":0.20530592878203416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165586955","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99734145,0.0017134333,0.00007715376,0.0004581129,0.00007849183,0.00026383367,0.00001704766,0.000005946834,0.000044531316],"genre_scores_gemma":[0.999618,0.00008354832,0.000056418005,0.000030229565,0.000011357922,0.0000034865022,0.00006572261,0.000007436919,0.00012382725],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99926764,0.00008662036,0.00030144176,0.0001317331,0.000012684061,0.00019986283],"domain_scores_gemma":[0.9996763,0.000039380924,0.00014841894,0.00008196758,0.000029745757,0.000024193028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071762665,0.00006756019,0.0001385628,0.00026955587,0.00006730576,0.000007279566,0.000033393408,0.00007861206,0.0000014826035],"category_scores_gemma":[0.000070313574,0.00006416923,0.000009995243,0.00013276857,0.00005574582,0.000078617515,0.0000080379095,0.00007871117,0.0000021058306],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016076339,0.00004270689,0.05538366,0.000016201724,0.0000145705335,3.8764685e-7,0.0075318823,0.000016410291,0.9290348,0.00017088588,0.000018437497,0.007609286],"study_design_scores_gemma":[0.0005726021,0.00015396935,0.8405632,0.000027943133,0.000004476757,0.000018228066,0.001959218,0.000009781873,0.15580861,0.00004649877,0.0007482227,0.00008726448],"about_ca_topic_score_codex":0.031657454,"about_ca_topic_score_gemma":0.5369295,"teacher_disagreement_score":0.7851795,"about_ca_system_score_codex":0.00024702935,"about_ca_system_score_gemma":0.0003040403,"threshold_uncertainty_score":0.9747908},"labels":[],"label_agreement":null},{"id":"W2165591553","doi":"10.1038/nature03308","title":"Integral role of IRF-5 in the gene induction programme activated by Toll-like receptors","year":2005,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1009,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"","keywords":"Proinflammatory cytokine; TLR4; Transcription factor; Interferon regulatory factors; Biology; Toll-like receptor; Cell biology; Innate immune system; IRF1; Signal transducing adaptor protein; TRIF; Immunology; Signal transduction; Cancer research; Immune system; Inflammation; Gene; Genetics","score_opus":0.0049737184922909955,"score_gpt":0.2263085999365825,"score_spread":0.2213348814442915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165591553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921719,0.005251943,0.000003071997,0.0015048224,0.00040529683,0.00020982049,0.0000031519974,0.000024801462,0.0004252373],"genre_scores_gemma":[0.9984463,0.000078196084,0.000049705588,0.00021858407,0.000038284765,0.000019034029,0.00024801723,0.000006532646,0.0008953738],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999266,0.00021629251,0.00018297399,0.00011559521,0.00003670894,0.00018239248],"domain_scores_gemma":[0.9996632,0.00004467427,0.00008868041,0.000154389,0.000044160886,0.000004914392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028531536,0.000092781054,0.00012016334,0.000086876214,0.000051235696,0.0000067772735,0.00016642669,0.0011341664,0.00012025],"category_scores_gemma":[0.00006874092,0.00006121086,0.00004683254,0.00021656508,0.00005677343,0.00012683785,0.00001706202,0.0014860871,0.00004822905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024010186,0.0000856123,0.00019313084,0.000002324665,0.000027848751,2.0278296e-7,0.0010389615,0.0000014388328,0.8934806,0.00014706417,0.0113179535,0.09346477],"study_design_scores_gemma":[0.00035250827,0.000060176408,0.0012249001,0.000008670712,0.000006041789,0.000016960776,0.0006987187,0.0000014802833,0.6583513,0.00003107405,0.339199,0.000049144135],"about_ca_topic_score_codex":0.0000610801,"about_ca_topic_score_gemma":0.000032206124,"teacher_disagreement_score":0.32788107,"about_ca_system_score_codex":0.00004282365,"about_ca_system_score_gemma":0.000028936265,"threshold_uncertainty_score":0.87477297},"labels":[],"label_agreement":null},{"id":"W2165655956","doi":"10.1038/sj.embor.7401161","title":"NLRX1 is a mitochondrial NOD‐like receptor that amplifies NF‐κB and JNK pathways by inducing reactive oxygen species production","year":2008,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":313,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Istituto Pasteur-Fondazione Cenci Bolognetti; Crohn's and Colitis Foundation of Canada; Crohn's and Colitis Foundation","keywords":"Cell biology; Reactive oxygen species; Biology; Mitochondrion; Kinase; Signal transduction; Mitochondrial ROS; Receptor; Intracellular; Biochemistry","score_opus":0.024325508332708252,"score_gpt":0.20964086837905296,"score_spread":0.18531536004634472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165655956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9918929,0.002099406,0.000042618263,0.000561097,0.0033532938,0.00041666374,0.000012061688,0.00010777659,0.0015142029],"genre_scores_gemma":[0.9769802,0.00054257264,0.000108341366,0.00011367726,0.00029582583,0.000051664763,0.00042512306,0.000026353442,0.021456232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847823,0.00015847103,0.00044488144,0.00052365457,0.00008439898,0.0003103635],"domain_scores_gemma":[0.9989614,0.00006521955,0.00040713724,0.00042832692,0.00011340275,0.000024508716],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002612532,0.00022609228,0.00031833196,0.00013058279,0.00051241316,0.000027280385,0.00006669999,0.00030261496,0.00029976986],"category_scores_gemma":[0.00027467322,0.00020525436,0.000084171115,0.000119290926,0.00023348164,0.0003889998,0.00007168771,0.0002945749,0.00012463682],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026840696,0.000046064717,0.0011915666,0.000010771647,0.000100939906,0.000039123708,0.0050739,2.9081656e-7,0.87190676,0.000014600776,0.12044034,0.0009072237],"study_design_scores_gemma":[0.00024804962,0.000092990165,0.0052210665,0.00003549253,0.000022176026,0.0014064923,0.00064035476,1.6706714e-7,0.73819315,0.00007410352,0.25386986,0.00019609726],"about_ca_topic_score_codex":0.0001284951,"about_ca_topic_score_gemma":0.0000064739615,"teacher_disagreement_score":0.13371363,"about_ca_system_score_codex":0.000068990645,"about_ca_system_score_gemma":0.00010073089,"threshold_uncertainty_score":0.837003},"labels":[],"label_agreement":null},{"id":"W2165666169","doi":"10.1177/1073858404263494","title":"Glucocorticoids: Protectors of the Brain during Innate Immune Responses","year":2004,"lang":"en","type":"review","venue":"The Neuroscientist","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":79,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Microglia; Innate immune system; Neuroscience; Immune system; Neuroinflammation; Biology; Proinflammatory cytokine; Myeloid; Inflammation; Immunology","score_opus":0.021777212772709026,"score_gpt":0.2814429337922662,"score_spread":0.2596657210195572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165666169","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.022471093,0.97243786,0.0000031578227,0.00023056654,0.0029789545,0.001700382,0.000045906705,0.000052727966,0.000079326],"genre_scores_gemma":[0.0070097144,0.96720725,0.0000017508121,0.00004104984,0.000035830697,0.00017669817,0.000030171257,0.00006204253,0.025435474],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962927,0.0019648331,0.0008773087,0.00036490703,0.000102575126,0.00039768877],"domain_scores_gemma":[0.99747026,0.00040131435,0.0008934384,0.0011719277,0.00005207703,0.000010995591],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00079829805,0.00034768248,0.0008172281,0.00020613906,0.0006905195,0.000045005414,0.0012377582,0.00027601607,0.000073326155],"category_scores_gemma":[0.001159072,0.00017829108,0.0006009537,0.00075187406,0.00090473174,0.00007703328,0.0004961562,0.0007663924,0.00022039801],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039888176,0.00018433577,0.000005025336,0.010336468,0.00027106117,0.000022827584,0.0004981188,0.000004146509,0.8525421,0.0009285786,0.0004427932,0.13436565],"study_design_scores_gemma":[0.00048254468,0.000068917485,0.00095375907,0.005282315,0.00024011488,0.00047482905,0.0000113305005,8.257626e-8,0.07186395,0.000034925895,0.92036086,0.00022639052],"about_ca_topic_score_codex":0.000050069702,"about_ca_topic_score_gemma":0.0000032424189,"teacher_disagreement_score":0.91991806,"about_ca_system_score_codex":0.00008899332,"about_ca_system_score_gemma":0.00042412127,"threshold_uncertainty_score":0.72704995},"labels":[],"label_agreement":null},{"id":"W2165723604","doi":"10.4049/jimmunol.181.2.1446","title":"Varying Importance of Soluble and Membrane CD14 in Endothelial Detection of Lipopolysaccharide","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Fondation pour la Recherche Médicale","keywords":"Lipopolysaccharide; CD14; Chemistry; Medicine; Biochemistry; Immunology","score_opus":0.011682327283790562,"score_gpt":0.2179908506949279,"score_spread":0.20630852341113734,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165723604","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888762,0.010204085,0.00016449686,0.00016922546,0.00043158286,0.00007529264,0.0000010419587,0.0000036259112,0.0000744067],"genre_scores_gemma":[0.9954673,0.004358007,0.000028944172,0.000016455864,0.000018619345,0.0000010321675,8.1269474e-7,0.000006627052,0.00010217272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986831,0.00035885986,0.00070781313,0.000056621924,0.00003503921,0.00015855672],"domain_scores_gemma":[0.9986821,0.0002979173,0.0007477478,0.00015555786,0.000111464826,0.0000052369205],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077799254,0.00008767952,0.00035391084,0.00023063616,0.000070516915,0.0000010283493,0.00018272987,0.0001446231,0.00005422255],"category_scores_gemma":[0.00018972831,0.00006220348,0.0000647473,0.000095589574,0.00036506084,0.00013338248,0.000047375375,0.0003325824,0.000004879723],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023478458,0.00004828264,0.0015084659,0.000011797197,0.00014674486,0.0000057313787,0.0018502111,0.000023965109,0.9918858,0.00007274179,0.000007856247,0.0020905773],"study_design_scores_gemma":[0.0016702862,0.00048165524,0.010419548,0.000041713556,0.00003505244,0.002215521,0.00037281978,0.0000071658233,0.9843286,0.00013048697,0.00024570234,0.000051439718],"about_ca_topic_score_codex":0.00017537875,"about_ca_topic_score_gemma":0.000027065298,"teacher_disagreement_score":0.008911082,"about_ca_system_score_codex":0.000022025877,"about_ca_system_score_gemma":0.0000781826,"threshold_uncertainty_score":0.2536584},"labels":[],"label_agreement":null},{"id":"W2165872665","doi":"10.1161/01.res.88.5.491","title":"Lipopolysaccharide Internalization Activates Endotoxin-Dependent Signal Transduction in Cardiomyocytes","year":2001,"lang":"en","type":"article","venue":"Circulation Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"National Heart, Lung, and Blood Institute; Charles H. Hood Foundation","keywords":"Internalization; Cell biology; Endocytosis; Intracellular; Myocyte; Endosome; Lipopolysaccharide; Signal transduction; Extracellular; Biology; Colocalization; Cell; Biochemistry; Immunology","score_opus":0.05384352962681627,"score_gpt":0.33384892525532417,"score_spread":0.2800053956285079,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2165872665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913633,0.00073304115,0.0053004352,0.00033336584,0.00025788092,0.00041339864,0.0000013047148,0.00005745032,0.0015398473],"genre_scores_gemma":[0.9984765,0.00021223012,0.0000067277856,0.000015058211,0.00007205163,0.00007433025,0.00009997675,0.000015547157,0.0010275847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802065,0.0008049937,0.00035065456,0.00028123634,0.00016015768,0.00038231845],"domain_scores_gemma":[0.99928045,0.00021402174,0.00006268764,0.00020885476,0.00021496587,0.000019013769],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013457919,0.00011259251,0.00016519707,0.00072313077,0.00020595969,0.00005291055,0.00016235805,0.0002033603,0.0023229274],"category_scores_gemma":[0.0001590261,0.00011439189,0.00006598601,0.00041804145,0.0001064806,0.00042543886,0.000034964374,0.00043038587,0.00049832993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036411465,0.00006190182,0.027718807,0.000011284289,0.00004165217,0.000009451619,0.00064967416,0.001521593,0.9535529,0.00075895624,0.00006806157,0.015241588],"study_design_scores_gemma":[0.0010999057,0.000063260646,0.057682026,0.000053816664,0.0000072832772,0.00009185027,0.00049988605,0.00066773186,0.9355721,0.00080642867,0.003312467,0.00014325528],"about_ca_topic_score_codex":0.0006740704,"about_ca_topic_score_gemma":0.0000755412,"teacher_disagreement_score":0.02996322,"about_ca_system_score_codex":0.00022430242,"about_ca_system_score_gemma":0.000082691746,"threshold_uncertainty_score":0.9985891},"labels":[],"label_agreement":null},{"id":"W2166108789","doi":"10.1016/j.vetimm.2014.03.005","title":"Ovocalyxin-36 is an effector protein modulating the production of proinflammatory mediators","year":2014,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopolysaccharide; Biology; Innate immune system; Immune system; Proinflammatory cytokine; Cell biology; Molecular biology; Inflammation; Microbiology; Immunology","score_opus":0.011152174182963126,"score_gpt":0.23219694317932324,"score_spread":0.2210447689963601,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166108789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99277276,0.004073414,0.000104166946,0.0005583742,0.0014455484,0.0007565908,0.0000049227074,0.000115357754,0.00016884728],"genre_scores_gemma":[0.9986779,0.0001569459,0.00015037971,0.00010913108,0.00006902021,0.0001898024,0.000061244114,0.000036227444,0.00054934813],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99587977,0.002280854,0.0007330749,0.0005323032,0.000057428108,0.00051658007],"domain_scores_gemma":[0.9981977,0.00027111234,0.0004649945,0.00091142947,0.00013501976,0.000019753785],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015360872,0.00035005168,0.0005608561,0.0002444232,0.0005482003,0.00001528078,0.00041988736,0.0005423145,0.00013185247],"category_scores_gemma":[0.00056719326,0.00026414174,0.00010794439,0.00018814142,0.0013549142,0.00035677437,0.0002512269,0.0006003061,0.00015594317],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016797034,0.00010175147,0.00065013225,0.00006449237,0.00014519478,0.000007643354,0.0020329335,0.0000024072515,0.97189873,0.0011385946,0.000049060975,0.022229351],"study_design_scores_gemma":[0.0016652556,0.0061393157,0.093573116,0.00013421962,0.00009552859,0.0028905673,0.000825861,0.000059699796,0.87967306,0.0006932914,0.013762595,0.00048747222],"about_ca_topic_score_codex":0.00004314097,"about_ca_topic_score_gemma":0.0000025421643,"teacher_disagreement_score":0.092922986,"about_ca_system_score_codex":0.000028870105,"about_ca_system_score_gemma":0.000060787017,"threshold_uncertainty_score":0.9999811},"labels":[],"label_agreement":null},{"id":"W2166589167","doi":"10.1113/expphysiol.2006.033688","title":"Mifepristone (RU38486) influences the core temperature response of term pregnant rats to intraperitoneal lipopolysaccharide","year":2006,"lang":"en","type":"article","venue":"Experimental Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Antiglucocorticoid; Lipopolysaccharide; Endocrinology; Internal medicine; Glucocorticoid; Corticosterone; Medicine; Endogeny; Mifepristone; Antagonist; Gestation; Glucocorticoid receptor; Receptor; Pregnancy; Biology; Hormone","score_opus":0.009279717213356438,"score_gpt":0.2626611640761389,"score_spread":0.2533814468627824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166589167","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99320906,0.0051592086,0.000001516842,0.0003723434,0.00065371604,0.00042408155,0.000015620437,0.00004847396,0.00011595581],"genre_scores_gemma":[0.99823594,0.000021380085,0.000036838734,0.00031627095,0.00009453067,0.00011173049,0.00007940045,0.000017209983,0.0010867201],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983338,0.00046202034,0.00045883792,0.00032619183,0.000056603913,0.000362545],"domain_scores_gemma":[0.9990878,0.00021939409,0.00017343354,0.00043832647,0.00006173291,0.00001929939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024372726,0.0002352359,0.00036324328,0.00010825193,0.0002609909,0.000012326256,0.0003842032,0.00024155331,0.00030223542],"category_scores_gemma":[0.000052325435,0.00016072574,0.000118550015,0.0001378156,0.00053214753,0.00010895076,0.00015893478,0.00023991475,0.0002344472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0049908618,0.0001963049,0.000088174376,0.000006851363,0.000062808445,0.0000032523576,0.0014764459,0.000023517525,0.989745,0.0009307478,0.0022841434,0.0001918438],"study_design_scores_gemma":[0.0005520502,0.0006295473,0.06233479,0.000042688065,0.00001125797,0.000036961006,0.00077518943,9.876836e-7,0.93288696,0.00007571679,0.0024807448,0.00017311133],"about_ca_topic_score_codex":0.00026822253,"about_ca_topic_score_gemma":0.0000075596076,"teacher_disagreement_score":0.062246617,"about_ca_system_score_codex":0.000051211886,"about_ca_system_score_gemma":0.00007358955,"threshold_uncertainty_score":0.65542054},"labels":[],"label_agreement":null},{"id":"W2166790123","doi":"10.1128/iai.01029-08","title":"Role of NADPH Phagocyte Oxidase in Host Defense against Acute Respiratory <i>Acinetobacter baumannii</i> Infection in Mice","year":2008,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":71,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; Institute for Biological Sciences","funders":"","keywords":"Phagocyte; Acinetobacter baumannii; Biology; Microbiology; NADPH oxidase; Respiratory burst; Immunology; Respiratory system; Respiratory infection; Host (biology); Macrophage; Phagocytosis; Bacteria; Reactive oxygen species; Pseudomonas aeruginosa; Biochemistry","score_opus":0.011687000563666835,"score_gpt":0.23210541395747802,"score_spread":0.22041841339381119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166790123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964187,0.0012975684,0.000012714495,0.00001914605,0.00023253892,0.00024321921,0.00000572789,0.000045842084,0.0017245429],"genre_scores_gemma":[0.99714464,0.0024128102,0.0000043778687,0.00015816453,0.000013842663,0.000024728279,0.00005873741,0.000012784478,0.00016990953],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983849,0.00064760057,0.0005025106,0.0001850933,0.00003567127,0.00024421004],"domain_scores_gemma":[0.99938565,0.000100116325,0.00018392321,0.00022248561,0.00008953645,0.00001828284],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004902154,0.00018050625,0.00029677866,0.00050638017,0.00019347665,0.000008552893,0.00006122335,0.00029114546,0.000056586396],"category_scores_gemma":[0.000111182715,0.0001840523,0.000073925265,0.00037447232,0.00020175127,0.00040445695,0.0000627045,0.0005251857,0.0000719292],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005310675,0.00019650575,0.13358086,0.000017114964,0.000046273097,0.00000530019,0.0009974955,0.00001372765,0.86185706,0.00003142719,0.00007454119,0.0026486097],"study_design_scores_gemma":[0.0016998909,0.00017114347,0.60746837,0.00004744244,0.000011752096,0.00005804171,0.00004908899,0.000008701842,0.3804419,0.000015521944,0.009896048,0.00013207165],"about_ca_topic_score_codex":0.0038918823,"about_ca_topic_score_gemma":0.0009800406,"teacher_disagreement_score":0.48141518,"about_ca_system_score_codex":0.000091260175,"about_ca_system_score_gemma":0.00007156653,"threshold_uncertainty_score":0.75054353},"labels":[],"label_agreement":null},{"id":"W2166839443","doi":"10.1053/j.gastro.2009.12.008","title":"Neutrophil Migration During Liver Injury Is Under Nucleotide-Binding Oligomerization Domain 1 Control","year":2009,"lang":"en","type":"article","venue":"Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Institut Universitaire de France; European Regional Development Fund; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche","keywords":"NOD1; Phagocytosis; Immunology; Integrin alpha M; Liver injury; Inflammation; Chemistry; Tumor necrosis factor alpha; Receptor; Biology; Molecular biology; Cell biology; Innate immune system; NOD2; Endocrinology; Biochemistry","score_opus":0.005031844354036406,"score_gpt":0.20416134651776358,"score_spread":0.19912950216372716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166839443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921431,0.00015026308,0.0030715347,0.0037635318,0.00041084102,0.00024335946,0.000014275242,0.00009977755,0.00010330615],"genre_scores_gemma":[0.9971458,0.00010823351,0.00007065322,0.002090831,0.00006896915,0.000014223672,0.00012899753,0.000015158334,0.0003571695],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984304,0.00035399082,0.00039415117,0.0002931314,0.00003962603,0.00048870844],"domain_scores_gemma":[0.9994544,0.000024949595,0.00019694799,0.00024273474,0.000057561232,0.000023438994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016640789,0.00020211487,0.00027793922,0.00024568322,0.00023767378,0.000021096279,0.00015128459,0.00022319396,0.0005382276],"category_scores_gemma":[0.000016373842,0.00020164814,0.00010607471,0.00009687386,0.000095471994,0.0002445401,0.000027018199,0.00023574727,0.00060471985],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023001952,0.00006986341,0.006307538,0.0000056020613,0.000087723834,0.0000064591477,0.00037731434,0.000043923592,0.9890006,0.00048172337,0.0006224631,0.000696578],"study_design_scores_gemma":[0.008226755,0.0025613336,0.64606726,0.00005362432,0.00012407613,0.00039197245,0.00027544485,0.00008805286,0.33641797,0.00072655914,0.0046955994,0.00037132105],"about_ca_topic_score_codex":0.000015929938,"about_ca_topic_score_gemma":0.000011107932,"teacher_disagreement_score":0.65258265,"about_ca_system_score_codex":0.00007209582,"about_ca_system_score_gemma":0.000016309332,"threshold_uncertainty_score":0.8222973},"labels":[],"label_agreement":null},{"id":"W2166895287","doi":"10.1189/jlb.72.6.1234","title":"Regulation of gene expression in mouse macrophages stimulated with bacterial CpG-DNA and lipopolysaccharide","year":2002,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; National Institute of Allergy and Infectious Diseases; National Institutes of Health; American Heart Association","keywords":"TLR9; Biology; Toll-Like Receptor 9; CpG site; Innate immune system; Molecular biology; CpG Oligodeoxynucleotide; Gene; Cell biology; Gene expression; DNA methylation; Receptor; Genetics","score_opus":0.011681923855637452,"score_gpt":0.22262467749747278,"score_spread":0.21094275364183532,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2166895287","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997318,0.001998539,0.00020806768,0.00009178823,0.00025106725,0.00008448418,0.000003782927,0.000006444023,0.0000377776],"genre_scores_gemma":[0.9988855,0.0004167708,0.00033416704,0.000014085516,0.0000532616,0.0000017569654,0.000013904545,0.000007476179,0.00027309352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988392,0.00030776375,0.00055331434,0.00011014172,0.000027329395,0.00016223114],"domain_scores_gemma":[0.9991138,0.0001106137,0.000539094,0.000114257426,0.00010677328,0.000015450729],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028141108,0.00011530115,0.00034818362,0.0002690079,0.000041389038,0.0000057413627,0.00009901959,0.00024303565,0.00039346376],"category_scores_gemma":[0.00007593203,0.000081030325,0.000043136428,0.00006642448,0.0001442548,0.00015793099,0.000024965168,0.00018721264,0.000009221863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024148808,0.00005730054,0.0015699348,0.000009194744,0.000059059945,0.000007883693,0.0003162146,0.00003534514,0.9924679,0.000041502284,0.00009078881,0.0029300165],"study_design_scores_gemma":[0.0029928396,0.0008266929,0.009629708,0.00005609751,0.000020535492,0.00028662637,0.000047446283,0.000027904944,0.98493856,0.00003517518,0.0010540086,0.000084403306],"about_ca_topic_score_codex":0.000017162367,"about_ca_topic_score_gemma":0.000004393317,"teacher_disagreement_score":0.008059773,"about_ca_system_score_codex":0.000035495912,"about_ca_system_score_gemma":0.00002953837,"threshold_uncertainty_score":0.43081522},"labels":[],"label_agreement":null},{"id":"W2167548945","doi":"10.2353/ajpath.2009.090262","title":"Local Interleukin-1-Driven Joint Pathology Is Dependent on Toll-Like Receptor 4 Activation","year":2009,"lang":"en","type":"article","venue":"American Journal Of Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Children's Hospital of Pittsburgh; Dutch Arthritis Association; Top Institute Pharma; McMaster University","keywords":"Inflammation; TLR2; TLR4; Tumor necrosis factor alpha; Immunology; Cytokine; Synovial joint; Receptor; Toll-like receptor; Arthritis; Rheumatoid arthritis; Medicine; Pathogenesis; Immune system; Pathology; Osteoarthritis; Innate immune system; Internal medicine","score_opus":0.009735932303561049,"score_gpt":0.2419007772694202,"score_spread":0.23216484496585915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167548945","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98752725,0.00017538106,0.007406384,0.0034713785,0.0008857592,0.00011552824,0.000005333441,0.000025848667,0.0003871273],"genre_scores_gemma":[0.99529463,0.0001348681,0.00040862185,0.003718263,0.00008775464,0.000003708533,0.000020860789,0.000016037346,0.00031526998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976081,0.000864501,0.0007936336,0.00025964485,0.00008169154,0.00039243046],"domain_scores_gemma":[0.9983041,0.00015079246,0.0010021462,0.00029650013,0.00020468254,0.000041761563],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054629176,0.0002319097,0.0006383831,0.0003305689,0.00011111643,0.000011404519,0.00027981686,0.0002274722,0.00043645574],"category_scores_gemma":[0.00013652534,0.00019305095,0.00021288193,0.0001663279,0.00045472253,0.00015937594,0.000039658597,0.000698641,0.0004977139],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015611736,0.00017438464,0.00009992595,0.0000020439375,0.000079569196,0.00019812054,0.001478929,0.000044606986,0.76911503,0.00022399107,0.0026429293,0.2243793],"study_design_scores_gemma":[0.0024335582,0.015305232,0.01301891,0.00010767234,0.00007365162,0.007137954,0.0025134806,0.00000830143,0.94017947,0.00038535436,0.018477019,0.00035941615],"about_ca_topic_score_codex":0.000007666836,"about_ca_topic_score_gemma":0.0000014075043,"teacher_disagreement_score":0.22401989,"about_ca_system_score_codex":0.00016050159,"about_ca_system_score_gemma":0.00009975101,"threshold_uncertainty_score":0.7872389},"labels":[],"label_agreement":null},{"id":"W2167636398","doi":"10.1161/01.res.0000144175.70140.8c","title":"Immune Cell Toll-Like Receptor 4 Is Required for Cardiac Myocyte Impairment During Endotoxemia","year":2004,"lang":"en","type":"article","venue":"Circulation Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":156,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canada Research Chairs","keywords":"Myocyte; TLR4; Cardiac myocyte; Internal medicine; Endocrinology; Lipopolysaccharide; Biology; Receptor; Medicine","score_opus":0.03203160317371804,"score_gpt":0.31022544350163955,"score_spread":0.2781938403279215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2167636398","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99267936,0.002709639,0.00021108141,0.0007942185,0.00070064433,0.0014445774,0.000019556872,0.000083678584,0.0013572593],"genre_scores_gemma":[0.9919844,0.00026472888,0.000095151896,0.0000305627,0.00009552218,0.00034922658,0.0003461757,0.000032519958,0.0068017077],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979267,0.0003781292,0.00046595285,0.00039132452,0.00015804342,0.00067984906],"domain_scores_gemma":[0.9987868,0.00020124053,0.0001104407,0.0004988261,0.00036538852,0.000037268444],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013721717,0.00016746811,0.00026866185,0.00034402643,0.0007300389,0.00005558606,0.00023203128,0.00030637134,0.00049291505],"category_scores_gemma":[0.00012790642,0.00017044117,0.00021969235,0.00030744847,0.00014617394,0.00025748572,0.00009967526,0.0003547812,0.0015464321],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006682473,0.00009978085,0.00033728476,0.00008728779,0.00009062829,0.0000015502987,0.0012143337,0.00021636428,0.99395317,0.000340277,0.0018667391,0.0011243174],"study_design_scores_gemma":[0.0031472666,0.0001778602,0.018257922,0.00005507618,0.000014944624,0.000007771673,0.00039810216,0.00001578151,0.9526775,0.00034364173,0.02471195,0.00019222565],"about_ca_topic_score_codex":0.00013076297,"about_ca_topic_score_gemma":0.0000018054968,"teacher_disagreement_score":0.04127573,"about_ca_system_score_codex":0.00048627946,"about_ca_system_score_gemma":0.0002660728,"threshold_uncertainty_score":0.999231},"labels":[],"label_agreement":null},{"id":"W2168078376","doi":"10.1165/rcmb.2007-0053oc","title":"Cigarette Smoke Exposure Attenuates Cytokine Production by Mouse Alveolar Macrophages","year":2007,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Cigarette smoke; Cytokine; Alveolar macrophage; Immunology; Smoke; Macrophage; Medicine; Chemistry; In vitro; Biochemistry","score_opus":0.005096851341540982,"score_gpt":0.2337371249473685,"score_spread":0.22864027360582753,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168078376","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9778053,0.019521426,0.0018216539,0.00032038538,0.00032877194,0.00009815166,0.0000071797017,0.000016224607,0.00008086017],"genre_scores_gemma":[0.9981672,0.0004515191,0.000108954875,0.0009432639,0.000066841756,0.0000021152216,0.00002117443,0.00001933419,0.00021958261],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984084,0.00043914924,0.0005411551,0.00022706579,0.000046395602,0.00033783098],"domain_scores_gemma":[0.99887997,0.000077152145,0.000611146,0.0001965442,0.0001863208,0.00004884687],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009777113,0.00019401227,0.00038054856,0.0002299202,0.00011832017,0.000010645993,0.00016793805,0.0001658753,0.000032464523],"category_scores_gemma":[0.000106514344,0.00015806462,0.000114517265,0.00015920834,0.0005777505,0.000084146195,0.00004493177,0.0003721096,0.00001096799],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00055056176,0.000053825388,0.0033185221,0.0000074907475,0.00015397284,0.00003475347,0.00014501475,0.0000018428486,0.9539248,0.000026160134,0.0010609907,0.040722065],"study_design_scores_gemma":[0.00070058653,0.0021686628,0.0013008807,0.000011210206,0.000056462653,0.0001779029,0.00036057841,7.980549e-8,0.89356595,0.000017637822,0.1014854,0.0001546613],"about_ca_topic_score_codex":0.000022587232,"about_ca_topic_score_gemma":0.0000016412376,"teacher_disagreement_score":0.10042442,"about_ca_system_score_codex":0.00002690401,"about_ca_system_score_gemma":0.000055956545,"threshold_uncertainty_score":0.6445688},"labels":[],"label_agreement":null},{"id":"W2168532652","doi":"10.4049/jimmunol.179.7.4598","title":"Calcineurin Negatively Regulates TLR-Mediated Activation Pathways","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":104,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"Yale University","keywords":"TRIF; Calcineurin; TLR2; TLR3; Cell biology; Signal transducing adaptor protein; TLR4; Signal transduction; Innate immune system; Proinflammatory cytokine; Toll-like receptor; TLR9; Biology; Phosphorylation; Chemistry; Receptor; Immunology; Inflammation; Biochemistry; Transplantation; Medicine; Internal medicine","score_opus":0.013295723887815844,"score_gpt":0.23038629739061556,"score_spread":0.2170905735027997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168532652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933023,0.0029605564,0.0011884854,0.00115433,0.0007511245,0.00012169574,0.0000013586355,0.000025355419,0.0004948277],"genre_scores_gemma":[0.99880356,0.00036294552,0.000044116194,0.00016737997,0.00006996984,9.407194e-7,0.000014514011,0.000013942742,0.0005226161],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822944,0.0005837011,0.0007155575,0.000080060294,0.000055142027,0.00033608137],"domain_scores_gemma":[0.99751437,0.0011805966,0.00076442154,0.00023083495,0.00029651608,0.000013242983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00206829,0.00015104662,0.0002894941,0.0002782696,0.00021258098,0.000007544003,0.000366633,0.0002575614,0.00021991986],"category_scores_gemma":[0.00063955016,0.00009523894,0.00010231418,0.00022872654,0.000300439,0.00022482655,0.00006172191,0.00062191195,0.000235883],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027313437,0.00005632766,0.000121255376,0.0000030657939,0.00027326363,0.000007670682,0.001443736,0.000010755444,0.98535025,0.00061123964,0.00077455345,0.00861654],"study_design_scores_gemma":[0.0014686087,0.00059987156,0.06689767,0.000036910333,0.000043190194,0.00079396064,0.0011382068,0.0000021091814,0.9134802,0.0003528791,0.015086452,0.00009990243],"about_ca_topic_score_codex":0.000036126832,"about_ca_topic_score_gemma":0.0000060989673,"teacher_disagreement_score":0.07187001,"about_ca_system_score_codex":0.00007497095,"about_ca_system_score_gemma":0.00010086555,"threshold_uncertainty_score":0.3883731},"labels":[],"label_agreement":null},{"id":"W2168982702","doi":"10.1371/journal.pone.0050052","title":"Lipocalin 2 Regulates Inflammation during Pulmonary Mycobacterial Infections","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":69,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research; University Health Network","funders":"University of Pittsburgh; National Institute of Allergy and Infectious Diseases; Children's Hospital of Pittsburgh; Medical Center, University of Pittsburgh; U.S. Public Health Service; National Heart, Lung, and Blood Institute","keywords":"Immunology; Mycobacterium tuberculosis; Chemokine; Inflammation; Tuberculosis; Biology; Granuloma; Lipocalin; Lung; Microbiology; Medicine; Pathology","score_opus":0.017958961924351317,"score_gpt":0.202140972811853,"score_spread":0.1841820108875017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168982702","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99708223,0.00062487763,0.000010072314,0.00017046958,0.00039233436,0.00020513876,0.0000035904325,0.00015256857,0.0013587392],"genre_scores_gemma":[0.99659187,0.00009980923,0.00005161505,0.00001055992,0.00043551935,0.000047461817,0.00018718562,0.0000150955675,0.0025608926],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911064,0.00017179883,0.00026407978,0.00011004756,0.000039279606,0.00030417056],"domain_scores_gemma":[0.999553,0.00006440005,0.000101208156,0.00020376558,0.000057824,0.000019791141],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00020312259,0.00011412911,0.0001641922,0.00012665044,0.0002349686,0.00001553502,0.000069568356,0.0002035943,0.00095040625],"category_scores_gemma":[0.00013258708,0.0001133384,0.00004899096,0.00010769709,0.000052440606,0.0004741705,0.000051148658,0.00016592606,0.0021861813],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018554878,0.00048039615,0.0065481206,0.00004140404,0.00019639853,5.095167e-7,0.00032118574,0.0000013593964,0.9910757,0.00022922762,0.000036616526,0.0008835456],"study_design_scores_gemma":[0.00037924657,0.000043192424,0.07148042,0.00006788113,0.00007714177,0.00002472583,0.000029546796,0.0000058110163,0.9253924,0.000036226964,0.0023339456,0.0001294906],"about_ca_topic_score_codex":0.000016682436,"about_ca_topic_score_gemma":0.0000016822156,"teacher_disagreement_score":0.06568332,"about_ca_system_score_codex":0.000048415164,"about_ca_system_score_gemma":0.000017505488,"threshold_uncertainty_score":0.99996287},"labels":[],"label_agreement":null},{"id":"W2168997831","doi":"10.1186/cc1522","title":"Measurement of endotoxin activity in critically ill patients using whole blood neutrophil dependent chemiluminescence","year":2002,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":173,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Aptose Biosciences (Canada); University Health Network","funders":"","keywords":"Medicine; Sepsis; Intensive care unit; Leukocytosis; Lipopolysaccharide; Internal medicine; White blood cell; Critically ill; Bacteremia; Limulus amebocyte lysate; Intensive care; Gram-negative bacteria; Septic shock; Systemic inflammatory response syndrome; Whole blood; Immunology; Gastroenterology; Intensive care medicine; Antibiotics; Microbiology","score_opus":0.02734900890431694,"score_gpt":0.25410510934077835,"score_spread":0.2267561004364614,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2168997831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963616,0.0022763077,0.00008717628,0.0002929585,0.00021406771,0.00018397982,0.000017754002,0.000018709268,0.0005474177],"genre_scores_gemma":[0.99973625,0.00001202591,0.00006323992,0.00011822324,0.000015047592,0.000013914874,0.000009752947,0.000011116209,0.000020448359],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987915,0.00019950794,0.0003126811,0.00023464698,0.00012000031,0.00034162024],"domain_scores_gemma":[0.998284,0.00009231872,0.000036566238,0.0002264579,0.00133374,0.000026906173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014460107,0.00014103077,0.00024438315,0.00008795617,0.00007447486,0.000009534651,0.00013837186,0.00018662964,0.00017912875],"category_scores_gemma":[0.0021535966,0.00014091918,0.00007312733,0.00010077989,0.00020120661,0.00013641352,0.00006926596,0.00023833574,0.000054098648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090280766,0.00043094708,0.004015765,0.00015413073,0.000015113661,0.0000108010945,0.0002981885,0.0000020530279,0.99264055,0.00013127568,0.000022208927,0.0021886847],"study_design_scores_gemma":[0.0013878429,0.00019271529,0.0136668105,0.00014272066,0.000058474434,0.0000110031215,0.00033760935,0.000026424606,0.98382497,0.000016658198,0.00017617896,0.0001585723],"about_ca_topic_score_codex":0.000044104,"about_ca_topic_score_gemma":0.000010158474,"teacher_disagreement_score":0.009651045,"about_ca_system_score_codex":0.00010598258,"about_ca_system_score_gemma":0.000031232703,"threshold_uncertainty_score":0.5746517},"labels":[],"label_agreement":null},{"id":"W2169004039","doi":"10.1016/j.nutres.2014.08.012","title":"One-week high-fat diet leads to reduced toll-like receptor 2 expression and function in young healthy men","year":2014,"lang":"en","type":"article","venue":"Nutrition Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Alzheimer Society","keywords":"TLR2; Internal medicine; Endocrinology; CD14; Ex vivo; Peripheral blood mononuclear cell; Receptor; Toll-like receptor; Monocyte; Immune system; Chemistry; Biology; In vivo; TLR4; Immunology; Biochemistry; Medicine; Innate immune system; In vitro","score_opus":0.04175342194223638,"score_gpt":0.32188149107171904,"score_spread":0.2801280691294827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169004039","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920933,0.0006877778,0.000121239435,0.0044638854,0.00041470883,0.00077155785,0.000006658464,0.00005306405,0.0013877626],"genre_scores_gemma":[0.9956393,0.0004847697,0.00015258124,0.00012089893,0.00013045156,0.000323688,0.00025402315,0.000017736653,0.0028765046],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99713683,0.0015003238,0.00033668312,0.00037780358,0.00014406003,0.0005043265],"domain_scores_gemma":[0.9991168,0.00030111463,0.000051154686,0.00027902244,0.00019747324,0.000054472115],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001719511,0.00011958508,0.00023032575,0.0005958822,0.00035339984,0.000043013813,0.0001365092,0.0003082136,0.0004372219],"category_scores_gemma":[0.00028103607,0.00012297556,0.00003082128,0.00035654448,0.00010919988,0.00021985352,0.00011228805,0.0005320391,0.0010339232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007864713,0.00030546327,0.0002678876,0.000074618634,0.0000096178355,4.8361477e-7,0.000318677,9.114096e-7,0.9517474,0.00048149796,0.03233366,0.006595071],"study_design_scores_gemma":[0.0043481626,0.0040061814,0.017237816,0.00036044273,0.000005880124,0.000006647909,0.00061340746,0.000016050932,0.8925117,0.0007390901,0.079939134,0.00021546599],"about_ca_topic_score_codex":0.00028894487,"about_ca_topic_score_gemma":0.000059595066,"teacher_disagreement_score":0.059235677,"about_ca_system_score_codex":0.00014124328,"about_ca_system_score_gemma":0.000040677103,"threshold_uncertainty_score":0.9997439},"labels":[],"label_agreement":null},{"id":"W2169267616","doi":"10.3389/fimmu.2013.00333","title":"Functions of NOD-Like Receptors in Human Diseases","year":2013,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":317,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Nod; Receptor; Computational biology; Cell biology; Immunology; Biology; Medicine; Diabetes mellitus; Endocrinology; Internal medicine","score_opus":0.01567376907428547,"score_gpt":0.2622336879842472,"score_spread":0.2465599189099617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169267616","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007100374,0.9889877,0.00007958886,0.000016249007,0.008730024,0.0009214263,0.000030325346,0.00004585046,0.00047881698],"genre_scores_gemma":[0.000114822746,0.9887451,0.00008656836,0.000008934295,0.00002744624,0.00042970077,0.0015138955,0.00005268,0.0090208305],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961832,0.0012815153,0.0014472458,0.00047614632,0.000037513404,0.00057434617],"domain_scores_gemma":[0.9983975,0.00018885803,0.0006535406,0.00068722776,0.000058615853,0.00001421383],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002713037,0.00047483947,0.002390263,0.0018068817,0.00009800564,0.00000927186,0.00058708363,0.0013597026,0.00092695566],"category_scores_gemma":[0.00014505687,0.0004339388,0.00043223097,0.00064554,0.00056716055,0.00016278343,0.0001827484,0.0010054862,0.0005373906],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011242925,0.00029056522,0.0006042757,0.0016982808,0.0008393616,0.000007785437,0.00020340017,0.0000011192826,0.00049213733,0.00023902785,0.047129977,0.94838166],"study_design_scores_gemma":[0.0008231385,0.00015903111,0.000284094,0.0023240892,0.00023927732,0.000026155654,0.00028882595,2.7668096e-7,0.000086243046,0.00010574682,0.99530244,0.00036068851],"about_ca_topic_score_codex":0.00026148828,"about_ca_topic_score_gemma":0.000023180532,"teacher_disagreement_score":0.94817245,"about_ca_system_score_codex":0.0003001893,"about_ca_system_score_gemma":0.00028058843,"threshold_uncertainty_score":0.99998635},"labels":[],"label_agreement":null},{"id":"W2169356861","doi":"10.4049/jimmunol.181.11.7925","title":"Nod2-Dependent Th2 Polarization of Antigen-Specific Immunity","year":2008,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":183,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Howard Hughes Medical Institute","keywords":"Muramyl dipeptide; NOD2; Immune system; Mediator; Biology; Acquired immune system; Immunology; Immunity; Inflammation; In vivo; Cell biology; Innate immune system; Genetics","score_opus":0.01620261538624658,"score_gpt":0.2210263675582634,"score_spread":0.20482375217201682,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169356861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9693659,0.027546167,0.0012000484,0.00036172176,0.0009858616,0.000107209366,0.0000027561673,0.0000121512585,0.00041818424],"genre_scores_gemma":[0.98478144,0.01443062,0.000053107786,0.000039585837,0.000036451675,7.8875365e-7,0.000012790837,0.000012763649,0.0006324257],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99772066,0.0010765673,0.00082008395,0.00007017026,0.000070865026,0.00024162987],"domain_scores_gemma":[0.99798506,0.00031121,0.00091967307,0.00039241998,0.0003825608,0.00000905435],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001112399,0.00014148367,0.00038403977,0.00025380746,0.00031632293,0.0000036920824,0.0005601785,0.00023783579,0.00040098687],"category_scores_gemma":[0.00014058808,0.000094791736,0.0001421142,0.00019037734,0.0005413376,0.00019877046,0.00009998919,0.00061951415,0.00016416685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015343832,0.000121474855,0.0012400883,0.000003190719,0.00035287152,0.000007973542,0.0019614296,0.00002098261,0.990773,0.0005368768,0.00048680766,0.0029609066],"study_design_scores_gemma":[0.001620917,0.00066362123,0.12466461,0.00003329697,0.00003396765,0.0039000344,0.0008559508,0.0000011502866,0.85072106,0.00015837686,0.017236521,0.00011047089],"about_ca_topic_score_codex":0.000074603064,"about_ca_topic_score_gemma":0.0000022652955,"teacher_disagreement_score":0.14005193,"about_ca_system_score_codex":0.000044226235,"about_ca_system_score_gemma":0.00013862274,"threshold_uncertainty_score":0.43905252},"labels":[],"label_agreement":null},{"id":"W2169908590","doi":"10.1128/iai.69.11.6942-6950.2001","title":"Dual Role of Lipopolysaccharide (LPS)-Binding Protein in Neutralization of LPS and Enhancement of LPS-Induced Activation of Mononuclear Cells","year":2001,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute for Biological Sciences","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Lipopolysaccharide; Lipopolysaccharide binding protein; Tumor necrosis factor alpha; Stimulation; Peripheral blood mononuclear cell; Acute-phase protein; Membrane; Lipid A; CD14; Biology; Bacterial outer membrane; Chemistry; Cell biology; Inflammation; Biochemistry; Immunology; In vitro; Receptor; Endocrinology","score_opus":0.011719562264393552,"score_gpt":0.2327624647379249,"score_spread":0.22104290247353134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2169908590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9991953,0.00011663639,0.00011775151,0.000015603364,0.0000661214,0.00029350608,0.0000024284407,0.0000078567045,0.00018484109],"genre_scores_gemma":[0.99947095,0.00039703626,0.000018876583,0.0000026092798,0.000003932158,0.000008547241,0.000021452817,0.000006108082,0.00007048347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99901056,0.0002664959,0.0004926445,0.000092650655,0.0000355056,0.00010215099],"domain_scores_gemma":[0.9992662,0.00005632462,0.00043015621,0.00013161753,0.000108141845,0.0000075417447],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039873042,0.0000919159,0.00024779208,0.00027261156,0.00005847651,0.0000033922645,0.000035963993,0.000156913,0.00007710212],"category_scores_gemma":[0.000069849564,0.00009345044,0.000035111505,0.00017821172,0.00008988847,0.0002233763,0.00004051189,0.0001350644,0.0000018524912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004695014,0.0001918965,0.004009833,0.00008122678,0.000042205884,6.106042e-8,0.0013958612,0.000011927113,0.98425615,0.0003245885,0.0000016206486,0.00921511],"study_design_scores_gemma":[0.0008720008,0.00044529702,0.030494967,0.00015087672,0.000015868987,0.000003761066,0.0005602608,0.00003718063,0.9671767,0.00007752349,0.00009703577,0.00006852766],"about_ca_topic_score_codex":0.0026867683,"about_ca_topic_score_gemma":0.000042373194,"teacher_disagreement_score":0.026485134,"about_ca_system_score_codex":0.000023210752,"about_ca_system_score_gemma":0.000030638734,"threshold_uncertainty_score":0.40616077},"labels":[],"label_agreement":null},{"id":"W2170149002","doi":"10.4049/jimmunol.169.4.2069","title":"Hypoxia Diminishes Toll-Like Receptor 4 Expression Through Reactive Oxygen Species Generated by Mitochondria in Endothelial Cells","year":2002,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":84,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Hypoxia (environmental); TLR4; Cell biology; Reactive oxygen species; Inflammation; Toll-like receptor; Biology; Mitochondrial ROS; Mitochondrion; Receptor; Signal transduction; Chemistry; Biochemistry; Immunology; Oxygen; Innate immune system","score_opus":0.015274969003005104,"score_gpt":0.21245391868892552,"score_spread":0.19717894968592042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170149002","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9771111,0.017343208,0.00012839717,0.0012489978,0.002798205,0.00022086133,0.000021917536,0.000019840369,0.0011074868],"genre_scores_gemma":[0.9786177,0.009388572,0.00023997626,0.00024753658,0.00016184973,0.00001033647,0.000035333374,0.000033144934,0.011265497],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971231,0.0013951506,0.00083184097,0.00015884328,0.00007445014,0.0004165714],"domain_scores_gemma":[0.9982781,0.0005209412,0.0006936675,0.00033555256,0.00015818763,0.000013549127],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004989247,0.00024385854,0.0004943903,0.00016944326,0.00022511078,0.000020327072,0.00056410185,0.00037807092,0.0016904556],"category_scores_gemma":[0.00016373854,0.0001613673,0.00013545336,0.00018231894,0.000355991,0.00039661222,0.000100557314,0.00079882174,0.00047294176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002015923,0.00016235614,0.000017668013,0.0000028737636,0.00020738291,0.000009268051,0.0041770204,0.000011012179,0.9280955,0.000037084323,0.06428181,0.0009820724],"study_design_scores_gemma":[0.0018740736,0.0004663902,0.00036736077,0.000048914222,0.000035748188,0.0003078463,0.0013380528,0.0000024283622,0.78048134,0.00006155235,0.21487851,0.00013777766],"about_ca_topic_score_codex":0.00004774385,"about_ca_topic_score_gemma":0.0000054977945,"teacher_disagreement_score":0.15059671,"about_ca_system_score_codex":0.000107489526,"about_ca_system_score_gemma":0.00004801549,"threshold_uncertainty_score":0.99922216},"labels":[],"label_agreement":null},{"id":"W2170261953","doi":"10.1111/j.1365-2141.2008.06999.x","title":"Toll‐like receptor 4 ligand can differentially modulate the release of cytokines by human platelets","year":2008,"lang":"en","type":"article","venue":"British Journal of Haematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":137,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Platelet; Angiogenin; TLR4; Platelet activation; Cytokine; Receptor; Toll-like receptor; Monoclonal antibody; Lipopolysaccharide; Growth factor; Chemistry; Platelet-derived growth factor receptor; Biology; Cell biology; Molecular biology; Immunology; Biochemistry; Antibody; Cancer research; Innate immune system; Angiogenesis","score_opus":0.009058776191474764,"score_gpt":0.2116198140966306,"score_spread":0.20256103790515584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170261953","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897714,0.008589668,0.00008001235,0.00057422277,0.00071651954,0.000119970646,0.000023981076,0.00001258687,0.000111609355],"genre_scores_gemma":[0.9969015,0.001941732,0.000021981348,0.000102939004,0.000041090396,0.0000032051494,0.000048121845,0.000017071077,0.00092234503],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981933,0.00044210255,0.0008785278,0.00013382923,0.000070143426,0.0002820858],"domain_scores_gemma":[0.9987077,0.00014478553,0.0007253239,0.0001786835,0.00021605144,0.000027432914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028939274,0.00014710141,0.00063237024,0.000113634596,0.0003451129,0.000012762562,0.00034806202,0.00025814035,0.00024368984],"category_scores_gemma":[0.000110744935,0.00012277355,0.00018482578,0.00008532848,0.0004602525,0.00010859458,0.00005628108,0.0004321501,0.000027155915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047613797,0.00022454855,0.0004212671,0.00003009132,0.00036424748,0.0020625233,0.00044620785,0.0000059072645,0.9393733,0.00013988938,0.0519818,0.004474041],"study_design_scores_gemma":[0.0028058125,0.00056029717,0.0038480773,0.0002182577,0.00009128603,0.25112557,0.00013811019,0.0000026914713,0.7173748,0.00021383246,0.023414742,0.00020651985],"about_ca_topic_score_codex":0.00018977698,"about_ca_topic_score_gemma":0.00006112659,"teacher_disagreement_score":0.24906304,"about_ca_system_score_codex":0.000019600338,"about_ca_system_score_gemma":0.00009554236,"threshold_uncertainty_score":0.500656},"labels":[],"label_agreement":null},{"id":"W2170726335","doi":"10.1113/expphysiol.2004.028613","title":"Pregnancy influences the plasma cytokine response to intraperitoneal administration of bacterial endotoxin in rats","year":2004,"lang":"en","type":"article","venue":"Experimental Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; University of Calgary","funders":"","keywords":"Cytokine; Pregnancy; Medicine; Internal medicine; Endocrinology; Immunology; Biology","score_opus":0.010465561387723105,"score_gpt":0.2680799618029372,"score_spread":0.2576144004152141,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170726335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981402,0.0004801832,0.0000032444402,0.0003730981,0.00044501043,0.00042784287,0.000010450172,0.00001999709,0.0000999792],"genre_scores_gemma":[0.99953884,0.00001402036,0.00004965511,0.000075751836,0.000035911526,0.00014009638,0.00006675652,0.000008879006,0.00007010951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986372,0.0004618111,0.0003971525,0.00022176807,0.00003500738,0.0002470884],"domain_scores_gemma":[0.99947804,0.00014019081,0.00011756764,0.00022548171,0.000024815616,0.00001392673],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017641319,0.00014951473,0.00023984071,0.00011313637,0.0000897954,0.00000754702,0.0002176041,0.00015190855,0.0002496887],"category_scores_gemma":[0.0000815313,0.00011371942,0.000055929228,0.00015560274,0.00024374909,0.00013064253,0.00007679838,0.00014152803,0.00014067687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014473431,0.00020604012,0.000010030767,0.0000041808576,0.000026047022,0.0000045918146,0.0030471985,0.000076391996,0.98111844,0.00059380656,0.000025103489,0.00041472944],"study_design_scores_gemma":[0.0016786961,0.0015035543,0.025653554,0.000055909033,0.0000033546567,0.00003195505,0.0008166512,7.7658615e-7,0.9688471,0.000083118204,0.0012135628,0.00011179231],"about_ca_topic_score_codex":0.000075575255,"about_ca_topic_score_gemma":0.00002309411,"teacher_disagreement_score":0.025643524,"about_ca_system_score_codex":0.00006582573,"about_ca_system_score_gemma":0.00012511305,"threshold_uncertainty_score":0.46373433},"labels":[],"label_agreement":null},{"id":"W2170956534","doi":"10.1139/w07-094","title":"Possible requirement of intercellular adhesion molecule-1 for invasion of gingival epithelial cells by<i>Treponema medium</i>","year":2007,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Treponema; Microbiology; Biology; Intercellular Adhesion Molecule-1; Treponema denticola; Intracellular; Bacteria; Molecular biology; Cell biology; Immunology; Porphyromonas gingivalis; Genetics","score_opus":0.011885555225308674,"score_gpt":0.22244402168843316,"score_spread":0.21055846646312448,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2170956534","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899865,0.004851938,0.0031094737,0.00024036458,0.0013322181,0.00023268942,0.00015002,0.0000033636495,0.000093457595],"genre_scores_gemma":[0.99887836,0.00012672353,0.00032942812,0.00008751723,0.000046631056,0.0000013167058,0.00013367606,0.00001672022,0.0003796225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99807507,0.00021241378,0.0011089158,0.00015104731,0.000025603384,0.00042696338],"domain_scores_gemma":[0.99818337,0.00023091442,0.0008851249,0.00019088756,0.00042832398,0.00008138013],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015779113,0.00016515143,0.00049071654,0.0005414274,0.000086665226,0.000004682307,0.00033223093,0.0003609632,0.0001766532],"category_scores_gemma":[0.00020443682,0.0001440614,0.00023935038,0.00013199614,0.00031287986,0.00008232887,0.000026528942,0.00022082608,0.000015818045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000848674,0.000039276332,0.00016711034,0.000057350186,0.00014334281,0.00002146148,0.00067384244,0.0000040009922,0.99001026,0.00007812194,0.0065736677,0.0013828756],"study_design_scores_gemma":[0.0015904331,0.0011736262,0.00012595569,0.00019189598,0.00006175842,0.0003784827,0.00028623987,5.713448e-7,0.96446526,0.000061376595,0.03154502,0.00011937272],"about_ca_topic_score_codex":0.0005744312,"about_ca_topic_score_gemma":0.00096610555,"teacher_disagreement_score":0.02554501,"about_ca_system_score_codex":0.0001190455,"about_ca_system_score_gemma":0.00069694547,"threshold_uncertainty_score":0.58746535},"labels":[],"label_agreement":null},{"id":"W2171184503","doi":"10.1152/ajpgi.00462.2001","title":"Hepatic leukocyte recruitment in a model of acute colitis","year":2002,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Colitis; Intravital microscopy; Inflammation; Inflammatory bowel disease; Medicine; Immunology; Microcirculation; Internal medicine; Disease","score_opus":0.02305193215466554,"score_gpt":0.23691106755766303,"score_spread":0.2138591354029975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171184503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99860555,0.0007062491,0.00014798364,0.00021158454,0.00008547852,0.00016399618,0.0000102655795,0.000009150188,0.000059764443],"genre_scores_gemma":[0.99729925,0.0008751534,0.0014573514,0.0001863169,0.000035455796,0.00001292767,0.000010906908,0.000012757083,0.00010986175],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99802643,0.00053658703,0.0007502009,0.00023747362,0.000045906447,0.00040339163],"domain_scores_gemma":[0.99842167,0.00029150362,0.0008879483,0.00018531557,0.00017215668,0.000041411986],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023114642,0.00023064706,0.0008563655,0.00026927318,0.00006173369,0.0000033606052,0.00023733138,0.00006651145,0.00015456018],"category_scores_gemma":[0.000067652814,0.0001880668,0.00016574377,0.00018112863,0.0010496046,0.00014319608,0.00009541954,0.00043155975,0.000026955884],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018001212,0.00021907077,0.00040746466,0.000025290905,0.00018002962,0.000013374621,0.0005755804,0.0003330132,0.9906105,0.00031890158,0.0001993512,0.005317311],"study_design_scores_gemma":[0.010462507,0.035081167,0.5718793,0.0012246232,0.00069107197,0.010316393,0.0020087592,0.019069452,0.34250876,0.004816513,0.0007974927,0.0011439564],"about_ca_topic_score_codex":0.000103701335,"about_ca_topic_score_gemma":0.0000040319505,"teacher_disagreement_score":0.64810175,"about_ca_system_score_codex":0.000050109196,"about_ca_system_score_gemma":0.000049226386,"threshold_uncertainty_score":0.7669141},"labels":[],"label_agreement":null},{"id":"W2171238188","doi":"10.1152/ajpheart.01194.2010","title":"Heterotrimeric G<sub>i</sub>/G<sub>o</sub>proteins modulate endothelial TLR signaling independent of the MyD88-dependent pathway","year":2011,"lang":"en","type":"article","venue":"American Journal of Physiology-Heart and Circulatory Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research","keywords":"Heterotrimeric G protein; TLR3; Cell biology; TLR4; Signal transduction; MAPK/ERK pathway; TLR2; Toll-like receptor; Proinflammatory cytokine; Biology; G protein; Innate immune system; Chemistry; Receptor; Inflammation; Immunology; Biochemistry","score_opus":0.01128120589187924,"score_gpt":0.20159656489358063,"score_spread":0.19031535900170138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171238188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972563,0.0011021814,0.000024897106,0.00005413164,0.0011070457,0.0003760959,0.000020114616,0.00003016706,0.000029104518],"genre_scores_gemma":[0.99902445,0.00030856978,0.000036333353,0.0003381942,0.0001997627,0.000023580056,0.000012419913,0.000048939313,0.000007743736],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9957751,0.0015964514,0.0012072548,0.00055529596,0.0001593903,0.0007065057],"domain_scores_gemma":[0.9970372,0.00020944518,0.0017095503,0.0006500294,0.00030304946,0.00009073802],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006849172,0.00048254142,0.0012792374,0.0003059337,0.00034085492,0.0000095840505,0.000558559,0.00036009884,0.000049700295],"category_scores_gemma":[0.00008484138,0.00036163148,0.00059527985,0.00029797014,0.001733045,0.0002472968,0.00024093171,0.0009971064,0.000073260766],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012059546,0.0002610092,0.00042306623,0.000032980326,0.0006171348,0.0000017043907,0.0009994323,0.000114861345,0.9922892,0.00013120448,0.000032134256,0.003891317],"study_design_scores_gemma":[0.0011308709,0.0011700124,0.2584417,0.00006355207,0.00010155023,0.0002752568,0.00033354815,0.000008117384,0.73723614,0.00080687087,0.00016002155,0.00027234916],"about_ca_topic_score_codex":0.00005969059,"about_ca_topic_score_gemma":0.0000039392,"teacher_disagreement_score":0.2580186,"about_ca_system_score_codex":0.000075303426,"about_ca_system_score_gemma":0.00029640397,"threshold_uncertainty_score":0.9998836},"labels":[],"label_agreement":null},{"id":"W2171598165","doi":"10.1128/aac.44.3.504-510.2000","title":"Consequences of Interaction of a Lipophilic Endotoxin Antagonist with Plasma Lipoproteins","year":2000,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Very low-density lipoprotein; Potency; Chylomicron; Lipoprotein; Chemistry; Cholesterol; Intermediate-density lipoprotein; High-density lipoprotein; Pharmacology; Endocrinology; In vitro; Internal medicine; Biochemistry; Biology; Medicine","score_opus":0.009171403560192715,"score_gpt":0.22922590169268295,"score_spread":0.22005449813249023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171598165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983172,0.00006826945,0.000010048728,0.0006512803,0.000063952284,0.00021055837,0.000015316527,0.000015075927,0.0006482946],"genre_scores_gemma":[0.99722815,0.0013298959,0.00008024839,0.00027415942,0.000012917068,0.000004675056,0.0000343078,0.000010603105,0.0010250376],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993401,0.00006177559,0.0002768851,0.00015175545,0.000027177717,0.00014226191],"domain_scores_gemma":[0.9996323,0.000026740949,0.00015990892,0.00013114368,0.000040492534,0.000009401289],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007881696,0.00012534144,0.0002472837,0.00006719034,0.000077037956,0.000009257227,0.000086148684,0.00010278818,0.0012627778],"category_scores_gemma":[0.0000036491042,0.00009661839,0.000050677605,0.000085182,0.0003719278,0.00010505603,0.000008570435,0.00008835083,0.000024374624],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018568856,0.00013031533,0.0012302956,0.000036277615,0.00015027891,0.0000017271567,0.00063776085,0.000003822991,0.9562079,0.000047680205,0.00063996343,0.03905711],"study_design_scores_gemma":[0.0017899491,0.00036477085,0.0038744025,0.000109443936,0.000019335826,0.00011049843,0.00008005117,0.0000031047803,0.96676666,0.000014091025,0.026763408,0.000104302126],"about_ca_topic_score_codex":0.00034066208,"about_ca_topic_score_gemma":0.000013873211,"teacher_disagreement_score":0.038952805,"about_ca_system_score_codex":0.00000779759,"about_ca_system_score_gemma":0.000034681747,"threshold_uncertainty_score":0.9996502},"labels":[],"label_agreement":null},{"id":"W2171680781","doi":"10.1002/ibd.20124","title":"Contribution of the NOD1/CARD4 insertion/deletion polymorphism +32656 to inflammatory bowel disease in Northern Europe#","year":2007,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Medical Research Council; Karolinska Institutet; Action Medical Research; Svenska Läkaresällskapet; Wellcome Trust","keywords":"NOD1; Inflammatory bowel disease; NOD2; Genotype; Allele; Ulcerative colitis; Haplotype; Odds ratio; Medicine; Crohn's disease; Immunology; Case-control study; Biology; Genetics; Disease; Internal medicine; Gene","score_opus":0.005279475003378817,"score_gpt":0.21328118954520803,"score_spread":0.2080017145418292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2171680781","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99462783,0.002181143,0.00018054519,0.0006254565,0.00095114636,0.0010288352,0.00007417429,0.00013649074,0.00019438572],"genre_scores_gemma":[0.9987075,0.00006274804,0.000004630867,0.0003517898,0.000110859495,0.00008158276,0.00019002553,0.000045940764,0.00044493354],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9969509,0.0005808109,0.0011295083,0.0004453844,0.0002240096,0.00066938286],"domain_scores_gemma":[0.9979102,0.00021134745,0.00044306854,0.00081812113,0.00046531198,0.00015197347],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000785333,0.00037913045,0.00034347334,0.00044946946,0.00030705007,0.000029915027,0.0005289082,0.00025172875,0.00011740889],"category_scores_gemma":[0.0010934881,0.00031822294,0.0002876251,0.00044753685,0.00033248583,0.00038411477,0.00021353108,0.00033867935,0.0005941849],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035409094,0.00023009995,0.7866059,0.0000815274,0.0000935449,0.00007212406,0.00044606964,0.0005379177,0.20519081,0.0013314447,0.00049539574,0.0013742824],"study_design_scores_gemma":[0.0016289653,0.00005873436,0.947057,0.00024000662,0.00008648034,0.000007643603,0.00010106889,0.000018326455,0.03868087,0.00014303137,0.011627271,0.00035060325],"about_ca_topic_score_codex":0.00008495618,"about_ca_topic_score_gemma":0.0005205276,"teacher_disagreement_score":0.16650993,"about_ca_system_score_codex":0.00023827852,"about_ca_system_score_gemma":0.0004300486,"threshold_uncertainty_score":0.999927},"labels":[],"label_agreement":null},{"id":"W2172133313","doi":"10.1128/iai.00287-07","title":"Interleukin 18 Participates in the Early Inflammatory Response and Bacterial Clearance during Pneumonia Caused by Nontypeable <i>Haemophilus influenzae</i>","year":2007,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Haemophilus influenzae; Immunology; Biology; Pneumonia; Innate immune system; Chemokine; Cytokine; Proinflammatory cytokine; Immune system; Microbiology; Bacterial pneumonia; Respiratory tract; Respiratory system; Inflammation; Medicine; Antibiotics; Internal medicine","score_opus":0.01243172315300853,"score_gpt":0.24766616337036063,"score_spread":0.2352344402173521,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2172133313","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984823,0.0006355866,0.0000099676245,0.00012741315,0.0002883225,0.0002456279,0.0000037405973,0.00005303129,0.00015401797],"genre_scores_gemma":[0.99941057,0.00020323088,0.0000015674425,0.00010277565,0.000022064783,0.00002035297,0.000014756959,0.0000119433735,0.00021272775],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99815416,0.00092585164,0.00039100245,0.00016838788,0.000038779956,0.00032179637],"domain_scores_gemma":[0.99922633,0.00034696783,0.00012202188,0.00023915333,0.00004448461,0.00002101541],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001898721,0.00016645371,0.00018975616,0.00015507509,0.00040173964,0.00006691775,0.0000966437,0.00021081041,0.00006580107],"category_scores_gemma":[0.00021826106,0.00013797788,0.000035030545,0.00016764239,0.00022568533,0.00034713128,0.00007283348,0.00048466993,0.000056288514],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005377308,0.000059388156,0.039052848,0.00001899123,0.00003078275,0.0000060574166,0.0033506283,0.0000015233444,0.95069796,0.000021616897,0.00009407126,0.0012888266],"study_design_scores_gemma":[0.0014612587,0.00020757303,0.7717989,0.000039849878,0.0000098293785,0.00006277396,0.00023269876,0.0000018351927,0.2164915,0.000023107086,0.0095394,0.00013124323],"about_ca_topic_score_codex":0.0010106869,"about_ca_topic_score_gemma":0.000286763,"teacher_disagreement_score":0.73420644,"about_ca_system_score_codex":0.000047514073,"about_ca_system_score_gemma":0.00002611342,"threshold_uncertainty_score":0.5626575},"labels":[],"label_agreement":null},{"id":"W2176227514","doi":"10.4049/jimmunol.194.supp.196.11","title":"Butyric acid inhibits a Toll-like receptor 2 agonist-mediated increase of Toll-like receptor 3-induced chemokine production by HT-29 intestinal epithelial cells (IRC10P.413)","year":2015,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Tech University","funders":"","keywords":"TLR3; Agonist; Chemistry; Chemokine; TLR2; Receptor; Incubation; Butyric acid; Internal medicine; Biochemistry; Endocrinology; Pharmacology; Toll-like receptor; Biology; TLR4; Innate immune system; Medicine","score_opus":0.012977592712830905,"score_gpt":0.22241649405850492,"score_spread":0.209438901345674,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2176227514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9853946,0.0063461764,0.00010331229,0.0022079288,0.0052628946,0.00044073394,0.000042196887,0.000052600815,0.0001495678],"genre_scores_gemma":[0.9959423,0.0011044119,0.00017084065,0.00017374489,0.00027987195,0.000015162051,0.00018901528,0.000049907998,0.00207478],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995362,0.0019259779,0.0015988617,0.00029469896,0.00019501885,0.0006234751],"domain_scores_gemma":[0.9959106,0.00042215138,0.0019224132,0.0006008308,0.0010674355,0.00007660442],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0028929005,0.0004298243,0.0009128491,0.0004383136,0.00024210803,0.000020424737,0.0007949782,0.00057273975,0.00042522265],"category_scores_gemma":[0.0017860612,0.0003125767,0.00022920317,0.00049324584,0.0006041937,0.0003995607,0.00022330703,0.00132524,0.0006786211],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010935665,0.00038574447,0.000043188225,0.000022027736,0.00054756046,0.0000067568617,0.0015865674,0.000006420898,0.9505122,0.00002103162,0.031702552,0.0042302934],"study_design_scores_gemma":[0.003866448,0.002616465,0.00021038081,0.00012504715,0.0001959542,0.001824995,0.0012004949,0.0000031243733,0.9378947,0.00006169378,0.051710714,0.00028999333],"about_ca_topic_score_codex":0.00019047895,"about_ca_topic_score_gemma":0.0000094150155,"teacher_disagreement_score":0.020008162,"about_ca_system_score_codex":0.00027043995,"about_ca_system_score_gemma":0.00067470176,"threshold_uncertainty_score":0.99993265},"labels":[],"label_agreement":null},{"id":"W2176700515","doi":"10.1637/0005-2086(2007)051[0078:pocaal]2.0.co;2","title":"Protection of Chickens Against a Lethal Challenge of Escherichia coli by a Vaccine Containing CpG Oligodeoxynucleotides as an Adjuvant","year":2007,"lang":"en","type":"article","venue":"Avian Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Saskatchewan","funders":"","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Biology; CpG site; Escherichia coli; Antigen; Microbiology; Vaccination; Virology; Immunology; Biochemistry; DNA methylation","score_opus":0.010059325726721335,"score_gpt":0.24267384431143427,"score_spread":0.23261451858471294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2176700515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99451256,0.0038396213,0.00019917522,0.0001208974,0.00012552731,0.00039866418,0.00004703939,0.000059944185,0.00069658825],"genre_scores_gemma":[0.9993228,0.00015456065,0.000019902262,0.00005672478,0.00002711632,0.000031684784,0.00020046433,0.000019988838,0.0001667588],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987804,0.00019549765,0.00045750383,0.00020892949,0.000053594358,0.00030405883],"domain_scores_gemma":[0.99917185,0.000084870684,0.00030012676,0.0002585212,0.00014416859,0.000040482573],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030417021,0.00016442548,0.00033926681,0.00012932497,0.00010496346,0.000005495679,0.00013975582,0.0001638759,0.00014737085],"category_scores_gemma":[0.00021905733,0.00015407137,0.00009688334,0.00015637056,0.00011080541,0.00018580594,0.00003854384,0.00016152755,0.000040819385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003433502,0.000552737,0.003193878,0.00008378491,0.0001993509,0.000008816639,0.0010846194,0.000003668016,0.9666201,0.0010275306,0.00011391999,0.023678122],"study_design_scores_gemma":[0.003284299,0.0025830294,0.16720729,0.00023723385,0.00015982875,0.000014049243,0.0027820363,0.000024027651,0.8194721,0.00043731666,0.0034429163,0.00035589834],"about_ca_topic_score_codex":0.0002877731,"about_ca_topic_score_gemma":0.00005314337,"teacher_disagreement_score":0.1640134,"about_ca_system_score_codex":0.000029364413,"about_ca_system_score_gemma":0.00009220539,"threshold_uncertainty_score":0.6282848},"labels":[],"label_agreement":null},{"id":"W2178846731","doi":"10.1089/108729003768247628","title":"Safety of CpG Oligodeoxynucleotides in Veterinary Species","year":2003,"lang":"en","type":"article","venue":"Antisense and Nucleic Acid Drug Development","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"CpG Oligodeoxynucleotide; CpG site; Immune system; Innate immune system; Adjuvant; Biology; DNA; Immunology; Computational biology; Gene; Genetics; DNA methylation; Gene expression","score_opus":0.011377786490704082,"score_gpt":0.2151377254281486,"score_spread":0.2037599389374445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2178846731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99299985,0.0019648261,0.000032672706,0.000097828226,0.00021107327,0.00013812722,0.0000021339063,0.000021757864,0.0045317225],"genre_scores_gemma":[0.99646884,0.000934052,0.00050793705,0.00005919707,0.00000425114,0.0000074741906,0.000018461436,0.000011710113,0.0019881004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988596,0.00019452965,0.0004557094,0.00019817486,0.00003882933,0.00025316604],"domain_scores_gemma":[0.9996162,0.000075249125,0.000102369675,0.00015676142,0.000034031294,0.000015366295],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043237253,0.00015373742,0.00028116957,0.00016329173,0.00012316897,0.000007897266,0.0000743566,0.000097206,0.0003372669],"category_scores_gemma":[0.000059908503,0.0001407243,0.000037668244,0.00012689212,0.00013709336,0.00010806151,0.000059330476,0.00011875091,0.0001370529],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035687297,0.00008979507,0.0046566147,0.000047264126,0.00008911962,0.000032137756,0.0036272483,0.0000014910136,0.973011,0.0036099087,0.0008439889,0.013634534],"study_design_scores_gemma":[0.0009117328,0.000044650842,0.10749388,0.00008435546,0.000007669435,0.00009230066,0.00074914435,0.0000010473565,0.73563284,0.00006949628,0.15474446,0.000168408],"about_ca_topic_score_codex":0.000013611248,"about_ca_topic_score_gemma":0.000008965818,"teacher_disagreement_score":0.23737817,"about_ca_system_score_codex":0.00002892624,"about_ca_system_score_gemma":0.00008513778,"threshold_uncertainty_score":0.573857},"labels":[],"label_agreement":null},{"id":"W2179164933","doi":"10.1371/journal.pone.0137753","title":"Staphylococcus aureus Inhibits IL-8 Responses Induced by Pseudomonas aeruginosa in Airway Epithelial Cells","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre; Christie (Canada)","funders":"Cystic Fibrosis Canada; Burroughs Wellcome Fund","keywords":"TLR2; Microbiology; TLR5; Pseudomonas aeruginosa; TLR4; Cystic fibrosis; Biology; Innate immune system; Staphylococcus aureus; Immunology; Respiratory epithelium; Inflammation; Respiratory tract; Immune system; Epithelium; Respiratory system; Bacteria","score_opus":0.03809338717426745,"score_gpt":0.23300868963916244,"score_spread":0.194915302464895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179164933","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996316,0.0012738293,0.000009881945,0.00069044525,0.0002490564,0.00046956446,0.00009386323,0.000102389946,0.00079496606],"genre_scores_gemma":[0.9950133,0.00009877303,0.00007835468,0.00017473637,0.00005566559,0.00006409001,0.00012340106,0.000027638298,0.0043640644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978638,0.0007227925,0.00047775626,0.0003290002,0.000118062795,0.000488566],"domain_scores_gemma":[0.99902385,0.00023511519,0.00015657351,0.00038609558,0.00014739454,0.0000509422],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00071603863,0.00024093792,0.00040952687,0.0002886199,0.000093181734,0.000023385765,0.0002497347,0.0004134833,0.00017309442],"category_scores_gemma":[0.00041917054,0.00023273038,0.000061426756,0.0002466757,0.00011053321,0.00021514876,0.00010559017,0.0004744128,0.0022184444],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019662983,0.00089964084,0.00031288606,0.000017898217,0.00015811651,0.0000071570335,0.0011667594,0.0000017560218,0.99184746,0.000063375584,0.0027481432,0.0008105248],"study_design_scores_gemma":[0.002621546,0.000495139,0.0005379105,0.000083052924,0.00004785897,0.000001983545,0.00022362059,0.0000056398912,0.99038386,0.00008824184,0.005229659,0.00028151125],"about_ca_topic_score_codex":0.00018467696,"about_ca_topic_score_gemma":0.000033822285,"teacher_disagreement_score":0.0035690984,"about_ca_system_score_codex":0.00011545382,"about_ca_system_score_gemma":0.00022312782,"threshold_uncertainty_score":0.99855846},"labels":[],"label_agreement":null},{"id":"W2179197851","doi":"10.3390/pathogens4040826","title":"Antimicrobial Mechanisms of Macrophages and the Immune Evasion Strategies of Staphylococcus aureus","year":2015,"lang":"en","type":"review","venue":"Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":191,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Canadian Institutes of Health Research","keywords":"Staphylococcus aureus; Microbiology; Immune system; Antimicrobial; Biology; Innate immune system; Effector; Evasion (ethics); Immunology; Immunity; Macrophage; Pathogen; Acquired immune system; Antimicrobial peptides; Bacteria; In vitro","score_opus":0.02251501115809354,"score_gpt":0.28009711479908456,"score_spread":0.257582103640991,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179197851","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008523934,0.99721426,0.00018460512,0.000013834952,0.0004085716,0.0007967391,0.00017901586,0.000018673163,0.00033192534],"genre_scores_gemma":[0.00657683,0.9927211,0.00007714194,0.0000033392055,0.000020050269,0.000032156026,0.00025252282,0.000029269508,0.00028762664],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99750453,0.001059098,0.0009030443,0.00023798484,0.000058667214,0.00023667028],"domain_scores_gemma":[0.99814093,0.00027517564,0.0009051707,0.00048774775,0.00017923658,0.000011710114],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011932185,0.00032991127,0.0017385049,0.00018174053,0.000097497374,0.000015070846,0.00033088026,0.0005050117,0.0000573669],"category_scores_gemma":[0.00009805362,0.00019672033,0.0004147966,0.00017040719,0.0005297214,0.00006721813,0.00019509853,0.0003114132,0.00003721891],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000404144,0.00008008035,3.3884376e-7,0.006844313,0.0008143278,0.000008794379,0.0006552969,0.0000015204749,0.49607745,0.01801573,0.0001859574,0.47691205],"study_design_scores_gemma":[0.0036874155,0.00040123423,0.000019188621,0.006259899,0.002918168,0.00021153686,0.0009957983,0.0000013544368,0.1551065,0.0017368147,0.8280655,0.0005965784],"about_ca_topic_score_codex":0.000036566817,"about_ca_topic_score_gemma":0.0000022302731,"teacher_disagreement_score":0.82787955,"about_ca_system_score_codex":0.000021515656,"about_ca_system_score_gemma":0.00035492526,"threshold_uncertainty_score":0.8022022},"labels":[],"label_agreement":null},{"id":"W2179882789","doi":"10.4049/jimmunol.1500378","title":"Regulation of TLR3 Activation by S100A9","year":2015,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research","keywords":"TLR3; Endosome; Cell biology; Innate immune system; Biology; Chemistry; Intracellular; Toll-like receptor; Immune system; Immunology","score_opus":0.01425403829521995,"score_gpt":0.23364135206254252,"score_spread":0.21938731376732257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2179882789","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904675,0.0052953493,0.0015702343,0.0013582889,0.00060154975,0.000080084086,0.0000012011528,0.000007933997,0.0006178914],"genre_scores_gemma":[0.998426,0.00022367641,0.000036265592,0.000046346668,0.000027200585,8.0491486e-7,0.00001534444,0.0000070682668,0.0012172712],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986174,0.00063388905,0.00052038295,0.00004399476,0.000049970167,0.00013432381],"domain_scores_gemma":[0.9984264,0.0002263625,0.00078517786,0.00018880151,0.00036518785,0.000008097584],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011749143,0.000082686216,0.00022331034,0.00013131295,0.000061004554,0.0000032402602,0.0002480402,0.00017030042,0.00012377536],"category_scores_gemma":[0.00032824842,0.00005380751,0.00006175237,0.000121315905,0.00020062101,0.00020738914,0.000037305166,0.0002631687,0.000075340286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017400347,0.000045994617,0.0000682412,0.0000024844048,0.00018411345,2.0035473e-7,0.0010476699,0.000035435758,0.9790996,0.00046119522,0.011982212,0.005332855],"study_design_scores_gemma":[0.0014226133,0.000691024,0.005786808,0.000027669887,0.000048257203,0.00026546686,0.00086480717,0.000004221541,0.95505285,0.0008201597,0.034959476,0.000056664183],"about_ca_topic_score_codex":0.00003887195,"about_ca_topic_score_gemma":7.460168e-7,"teacher_disagreement_score":0.024046732,"about_ca_system_score_codex":0.00005289332,"about_ca_system_score_gemma":0.0001162207,"threshold_uncertainty_score":0.21942067},"labels":[],"label_agreement":null},{"id":"W2182353725","doi":"10.1152/ajplung.2001.280.4.l762","title":"Role of LPS-induced microfilament depolymerization in MIP-2 production from rat pneumocytes","year":2001,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Toronto General Hospital; University Health Network","funders":"","keywords":"Microfilament; Cytochalasin D; Cytochalasin B; Lipopolysaccharide; Cell biology; Cytochalasin; Depolymerization; Actin; Chemistry; Cytoskeleton; Biology; Biochemistry; Immunology; In vitro; Cell","score_opus":0.003255951892566456,"score_gpt":0.2024933479767109,"score_spread":0.19923739608414445,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2182353725","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99281496,0.0062251636,0.00014403525,0.00017999571,0.00041105069,0.0001789143,0.0000028274078,0.000010786577,0.000032282107],"genre_scores_gemma":[0.9985821,0.00096568564,0.0001269035,0.00010056041,0.00007433007,0.000008016462,0.000105716026,0.000021638662,0.000014996146],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977404,0.00081350084,0.00073066243,0.00033044524,0.00005522929,0.0003297718],"domain_scores_gemma":[0.9985937,0.000107502994,0.00088103896,0.00027442235,0.000111491936,0.000031845524],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018994932,0.00024321866,0.0007473065,0.00030151906,0.000067944035,0.000005191405,0.00020808642,0.00016948173,0.00004490504],"category_scores_gemma":[0.0000802058,0.00021698995,0.00016488656,0.00028652768,0.0004218122,0.00013137094,0.00007301394,0.0003285752,0.000007391523],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013325344,0.00017139978,0.0005190641,0.00001483144,0.00023981498,0.0000074196337,0.0005426554,0.000084651714,0.9909111,0.00008005244,0.000012636819,0.006083801],"study_design_scores_gemma":[0.0009055233,0.00086417986,0.026242796,0.000060056747,0.00008508807,0.000079536556,0.0008260864,0.000027530896,0.9700846,0.0003682522,0.00026911372,0.00018723782],"about_ca_topic_score_codex":0.00025494734,"about_ca_topic_score_gemma":0.000004186421,"teacher_disagreement_score":0.025723733,"about_ca_system_score_codex":0.00003254308,"about_ca_system_score_gemma":0.00008809865,"threshold_uncertainty_score":0.8848594},"labels":[],"label_agreement":null},{"id":"W2183364729","doi":"10.1007/978-1-62703-845-4_28","title":"High-Purity Neutrophil Isolation from Human Peripheral Blood and Saliva for Transcriptome Analysis","year":2014,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Saliva; Rheumatoid arthritis; Periodontitis; Chronic bronchitis; Immunology; Transcriptome; Medicine; Inflammatory bowel disease; Peripheral blood; Biology; Disease; Pathology; Internal medicine; Gene; Genetics; Gene expression","score_opus":0.011701828240088525,"score_gpt":0.3283818021576775,"score_spread":0.31667997391758895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2183364729","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.52620596,0.0010971469,0.4722318,0.00014851977,0.00012625178,0.0001342195,0.000011221147,0.000019690908,0.000025193523],"genre_scores_gemma":[0.82368,0.000040368206,0.17534535,0.00018034561,0.000030560415,0.000055946035,0.00058477646,0.000014081509,0.000068595946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963941,0.0025239033,0.00040353934,0.00039128723,0.000014176186,0.00027302504],"domain_scores_gemma":[0.9992109,0.0003251818,0.000119110366,0.0002856231,0.000044337346,0.000014840652],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011357658,0.00017411864,0.00049339706,0.00028675393,0.00012203163,0.000012951059,0.00014330943,0.0004233379,0.00010506168],"category_scores_gemma":[0.00019258643,0.00016491784,0.0001595753,0.0002178276,0.00015924037,0.0000427446,0.00003604406,0.00019403182,0.0000031378388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001598543,0.000044587272,0.0026697712,0.000006880512,0.00053165195,7.6414636e-7,0.00021853458,0.000027923557,0.9804327,0.009699994,0.000004578285,0.0062027937],"study_design_scores_gemma":[0.0026479585,0.0004962731,0.02133494,0.000006827269,0.00071721507,0.0000049502637,0.000033964694,0.00025619124,0.948445,0.021468522,0.0043179714,0.0002701929],"about_ca_topic_score_codex":0.0003729254,"about_ca_topic_score_gemma":0.00005363768,"teacher_disagreement_score":0.29747403,"about_ca_system_score_codex":0.00001780774,"about_ca_system_score_gemma":0.00001120772,"threshold_uncertainty_score":0.67251545},"labels":[],"label_agreement":null},{"id":"W2185163395","doi":"10.1016/j.cellsig.2015.12.002","title":"TLR signalling affects sperm mitochondrial function and motility via phosphatidylinositol 3-kinase and glycogen synthase kinase-3α","year":2015,"lang":"en","type":"article","venue":"Cellular Signalling","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Key Research and Development Program of China; Natural Science Foundation of Jiangsu Province; National Natural Science Foundation of China","keywords":"Cell biology; Sperm motility; Motility; GSK-3; Phosphatidylinositol; Biology; PI3K/AKT/mTOR pathway; Kinase; Mitochondrion; Sperm; Glycogen synthase; Signal transduction; GSK3B; Phosphorylation; Genetics","score_opus":0.014684738821332208,"score_gpt":0.21151484572897797,"score_spread":0.19683010690764577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2185163395","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91923267,0.043764602,0.03501055,0.000103825754,0.0011192117,0.000530275,0.0000068554336,0.00011645833,0.00011552892],"genre_scores_gemma":[0.99875635,0.00015342417,0.00018781686,0.00009772857,0.000221278,0.00002514149,0.00018898124,0.000035363926,0.00033390019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980639,0.00042261436,0.00040927413,0.0005461817,0.00010039963,0.00045758957],"domain_scores_gemma":[0.99903595,0.00027091536,0.00019390405,0.0002582125,0.00012820924,0.00011281839],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006243169,0.0003363282,0.00040060974,0.00015425027,0.00036706316,0.00008128997,0.00013551328,0.00040302248,0.00016264502],"category_scores_gemma":[0.00016795887,0.00033183573,0.00009844708,0.00014749239,0.00019276091,0.00037728623,0.00010150587,0.0003690174,0.00014399986],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012265125,0.000091961374,0.00046051093,0.0000630886,0.00011475936,0.00004150583,0.000533766,0.00016359665,0.9922503,0.000094791416,0.00025090328,0.0047083003],"study_design_scores_gemma":[0.002772837,0.00046544534,0.0003149717,0.00011357427,0.00020671972,0.000043341737,0.00026559285,0.0020916197,0.986287,0.00030600312,0.0067752223,0.00035768448],"about_ca_topic_score_codex":0.00006917761,"about_ca_topic_score_gemma":0.000004702694,"teacher_disagreement_score":0.079523675,"about_ca_system_score_codex":0.00006231853,"about_ca_system_score_gemma":0.00008410066,"threshold_uncertainty_score":0.9999134},"labels":[],"label_agreement":null},{"id":"W2185251962","doi":"10.1189/jlb.68.6.821","title":"Neutrophil migration stimulates rat intestinal epithelial cell cytokine expression during helminth infection","year":2000,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Medical Research Council Canada; Crohn's and Colitis Foundation of Canada","keywords":"Biology; Intestinal epithelium; Epithelium; Cytokine; Infiltration (HVAC); Immunology; Inflammation; Receptor; Intestinal mucosa; Internal medicine; Medicine","score_opus":0.0076794193362403175,"score_gpt":0.2303262609959646,"score_spread":0.2226468416597243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2185251962","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99687225,0.0013055056,0.00033468226,0.00020554262,0.00092017895,0.0001060645,0.0000026900602,0.00003071427,0.00022235455],"genre_scores_gemma":[0.99701065,0.0012123921,0.00014476567,0.000041919644,0.000320753,0.000003512898,0.000041682106,0.00001447003,0.0012098593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833345,0.00046643283,0.0007113556,0.00016778267,0.00003912923,0.00028183137],"domain_scores_gemma":[0.9990017,0.00014272901,0.0004967072,0.000152852,0.00017695673,0.00002908959],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00034489672,0.0001939781,0.0003514217,0.0002709779,0.00019783468,0.000017463286,0.00015218619,0.00030332527,0.001077422],"category_scores_gemma":[0.00009613596,0.00014825726,0.0001695966,0.000119378594,0.00011894349,0.00028248344,0.000031908257,0.00045469886,0.00029472465],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030797473,0.0000960825,0.0024009729,0.000015412956,0.00003849239,0.000016093594,0.00018696906,0.00043500736,0.9865233,0.0000124216185,0.00023832086,0.006957228],"study_design_scores_gemma":[0.002277887,0.0009847289,0.014324333,0.000078898556,0.00004255717,0.0009003363,0.000020404634,0.000024990622,0.95150286,0.00008520328,0.029609822,0.00014798147],"about_ca_topic_score_codex":0.000053498865,"about_ca_topic_score_gemma":0.0000068043782,"teacher_disagreement_score":0.035020392,"about_ca_system_score_codex":0.00010446081,"about_ca_system_score_gemma":0.000089641704,"threshold_uncertainty_score":0.9998357},"labels":[],"label_agreement":null},{"id":"W2188788278","doi":"10.1139/y11-071","title":"Specific loss of Toll-like receptor 2 on bone marrow derived cells decreases atherosclerosis in LDL receptor null mice*The senior author, Stewart C. Whitman, passed away on 19 February 2010. The manuscript has been communicated by Ross W. Milne (e-mail: rmilne@ottawaheart.ca) and Yves L. Marcel (e-mail: ylmarcel@ottawaheart.ca), University of Ottawa Heart Institute, 40 Ruskin Street, Ottawa, ON K1Y 4W7, Canada.","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":true,"ca_institutions":"University of Ottawa","funders":"Canadian Institutes of Health Research; National Institutes of Health; Heart and Stroke Foundation of Canada","keywords":"LDL receptor; TLR2; Bone marrow; Internal medicine; Endocrinology; Cholesterol; Receptor; Innate immune system; Medicine; Inflammation; Biology; Lipoprotein; Immunology","score_opus":0.021960200202587,"score_gpt":0.21118920378716557,"score_spread":0.1892290035845786,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2188788278","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9874106,0.0031287575,0.0000027119656,0.006523515,0.0016686693,0.00061063474,0.0005044209,0.000010216498,0.0001404534],"genre_scores_gemma":[0.9959677,0.0013673634,0.00006781331,0.0013898163,0.00006473488,0.000009061507,0.00017490615,0.000034546985,0.0009240947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9950481,0.0026916948,0.00094537024,0.00044811392,0.00011716583,0.00074955326],"domain_scores_gemma":[0.997276,0.00095777755,0.0007569525,0.0004986798,0.00021391564,0.0002966563],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010419543,0.00046948012,0.0009957869,0.00041435636,0.0008201074,0.000015335505,0.00071348273,0.00053639564,0.0019544382],"category_scores_gemma":[0.00006812602,0.0003793015,0.00018323472,0.0002861352,0.0024491178,0.00018776578,0.000092834234,0.0012569092,0.000035730936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002535203,0.00022207382,0.003033961,0.000044197583,0.00032752266,0.00002818634,0.00075298117,0.000039572365,0.66239595,0.00007363652,0.33034587,0.00020086042],"study_design_scores_gemma":[0.0044298563,0.0017457521,0.13328052,0.00020159717,0.00016533994,0.00008461125,0.00097000244,0.0000101921305,0.5082534,0.000034975237,0.35040402,0.00041975494],"about_ca_topic_score_codex":0.21231785,"about_ca_topic_score_gemma":0.32097387,"teacher_disagreement_score":0.15414257,"about_ca_system_score_codex":0.00024244773,"about_ca_system_score_gemma":0.0012802138,"threshold_uncertainty_score":0.9998659},"labels":[],"label_agreement":null},{"id":"W2194465442","doi":"10.1016/j.cyto.2015.11.025","title":"Protective role of G-CSF in dextran sulfate sodium-induced acute colitis through generating gut-homing macrophages","year":2015,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Colitis; Macrophage colony-stimulating factor; Tumor necrosis factor alpha; Chemistry; Immunology; Adoptive cell transfer; Cytokine; Immune system; Macrophage; Endocrinology; Biology; Internal medicine; Medicine; T cell; In vitro; Biochemistry","score_opus":0.020664358766570246,"score_gpt":0.25988460396532165,"score_spread":0.2392202451987514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2194465442","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99663514,0.0012009492,0.0003755045,0.00015710655,0.00021786333,0.0004306179,0.00001713413,0.000041609142,0.00092410535],"genre_scores_gemma":[0.9989626,0.000024704515,0.00046506384,0.000037951835,0.000044189735,0.00006580652,0.00006239695,0.00001890218,0.00031840638],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987055,0.00029939492,0.0004114147,0.00021859967,0.000044148157,0.00032093967],"domain_scores_gemma":[0.9993876,0.00004914135,0.0001809461,0.00021757426,0.00014885621,0.000015842219],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003696619,0.00016184986,0.00032506196,0.000111420595,0.000090241374,0.000013427782,0.00015216382,0.0002137778,0.00005984887],"category_scores_gemma":[0.00015196575,0.00015229257,0.000060377675,0.00019125354,0.000081599006,0.0002483304,0.000071191585,0.00024880265,0.00009571496],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007446055,0.00004724739,0.00020769321,0.000011898274,0.000096542324,0.000012202289,0.0037566891,0.000024986251,0.98808473,0.0005106139,0.00007806615,0.0064246994],"study_design_scores_gemma":[0.0022680666,0.0002733672,0.005928503,0.000056766992,0.00002765196,0.000056048004,0.0010126092,0.000056757337,0.98773533,0.0008358288,0.0015902123,0.00015883823],"about_ca_topic_score_codex":0.00053197605,"about_ca_topic_score_gemma":0.00009266403,"teacher_disagreement_score":0.0062658614,"about_ca_system_score_codex":0.00008274984,"about_ca_system_score_gemma":0.00011682547,"threshold_uncertainty_score":0.6210311},"labels":[],"label_agreement":null},{"id":"W2197468298","doi":"10.1038/gene.2015.41","title":"Survival analysis and microarray profiling identify Cd40 as a candidate for the Salmonella susceptibility locus, Ity5","year":2015,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill Genome Centre","funders":"Canadian Institutes of Health Research","keywords":"Biology; Congenic; Salmonella; Immunology; Microarray analysis techniques; Genetics; Gene; Gene expression profiling; Salmonella infection; CD40; Immune system; Gene expression; Cytotoxic T cell","score_opus":0.02634068967920332,"score_gpt":0.28909221772413346,"score_spread":0.2627515280449301,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2197468298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98093545,0.016494991,0.0014234094,0.0002618957,0.00033650393,0.00039338868,0.000030586314,0.000026523101,0.00009722449],"genre_scores_gemma":[0.9974493,0.0011094357,0.000074222706,0.000047646194,0.000029000674,0.000028719103,0.00020949099,0.0000097947395,0.0010424312],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987005,0.00046168905,0.00028935415,0.00023739884,0.000038124028,0.0002729234],"domain_scores_gemma":[0.99892676,0.00031934836,0.00012044539,0.00042647865,0.00017522776,0.00003172754],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017411109,0.00016494823,0.0003065307,0.00010206447,0.00058312906,0.000071401046,0.00017262783,0.00016162664,0.000042066255],"category_scores_gemma":[0.0002136639,0.00011576181,0.000110471585,0.00021764517,0.0002730571,0.000118741205,0.00015805614,0.00019061592,0.000024939329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011082903,0.000046347992,0.033266224,0.000041806627,0.0011952642,8.129334e-7,0.0015265343,0.00001935367,0.943149,0.00022353276,0.00017756612,0.01924531],"study_design_scores_gemma":[0.0028715997,0.00041629278,0.14156455,0.000018197135,0.0014485777,0.00005945,0.008437839,0.00027093833,0.81335884,0.0007650283,0.030295018,0.00049369317],"about_ca_topic_score_codex":0.004492404,"about_ca_topic_score_gemma":0.00068087375,"teacher_disagreement_score":0.12979013,"about_ca_system_score_codex":0.000032437045,"about_ca_system_score_gemma":0.00010434798,"threshold_uncertainty_score":0.67912006},"labels":[],"label_agreement":null},{"id":"W2203291811","doi":"10.1371/journal.pone.0139856","title":"Leukotriene B4 Enhances NOD2-Dependent Innate Response against Influenza Virus Infection","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Leukotriene B4; Innate immune system; NOD2; Inflammation; IRF3; Immune system; Biology; Immunology; Secretion; Influenza A virus; Virus","score_opus":0.056156501739841116,"score_gpt":0.2589044943146387,"score_spread":0.2027479925747976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2203291811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956369,0.0017419464,0.000068751215,0.00023815845,0.0003485678,0.00028386898,0.000008752573,0.00019165203,0.0014814218],"genre_scores_gemma":[0.9950714,0.00042470917,0.00005173987,0.0004046201,0.00006217128,0.000063352585,0.00006772033,0.00002240204,0.0038318976],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981991,0.00068420114,0.00040893917,0.00025860098,0.00011220021,0.00033697192],"domain_scores_gemma":[0.9990148,0.00016054709,0.00018836773,0.0003448671,0.00025201897,0.00003939552],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010948695,0.00018832211,0.00029257298,0.00025150666,0.0001675319,0.000032918804,0.00015484323,0.00029196404,0.00015380501],"category_scores_gemma":[0.00075434695,0.00017977136,0.000058243153,0.00021345967,0.00010833993,0.00036124853,0.000096233154,0.000321516,0.0038924043],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050653233,0.0005351254,0.00096836867,0.000017795302,0.0002885556,0.0000064454944,0.00075281167,0.000022422806,0.99044347,0.000049325925,0.0004340572,0.001416316],"study_design_scores_gemma":[0.0017515975,0.00043364914,0.0047911764,0.000086258035,0.000066383196,0.000008367743,0.0000976749,0.00001291546,0.97582406,0.00006823463,0.01664199,0.00021769168],"about_ca_topic_score_codex":0.00018015766,"about_ca_topic_score_gemma":0.000044832246,"teacher_disagreement_score":0.016207932,"about_ca_system_score_codex":0.00015946696,"about_ca_system_score_gemma":0.00018337273,"threshold_uncertainty_score":0.99688315},"labels":[],"label_agreement":null},{"id":"W2217215084","doi":"10.1152/ajpregu.2000.278.5.r1140","title":"Role of endotoxin in the expression of endothelial selectins after cecal ligation and perforation","year":2000,"lang":"en","type":"article","venue":"American Journal of Physiology-Regulatory, Integrative and Comparative Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Selectin; Lipopolysaccharide; Sepsis; E-selectin; Perforation; Medicine; Immunology; Myeloperoxidase; Endothelial stem cell; Peritonitis; Small intestine; Cell adhesion molecule; Inflammation; Biology; Internal medicine; Cell adhesion; Cell; Biochemistry; In vitro","score_opus":0.007188841066829093,"score_gpt":0.2386879712311027,"score_spread":0.2314991301642736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2217215084","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998353,0.0011586929,0.000018889692,0.00006107458,0.000049582464,0.00019565574,0.0000136416975,0.0000034250165,0.0001460305],"genre_scores_gemma":[0.9994884,0.00023027768,0.00009696233,0.000058204874,0.000046897698,0.000023055087,0.000017656168,0.000005989057,0.000032532917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737793,0.0014878345,0.0006672757,0.00020880562,0.000062428604,0.00019572774],"domain_scores_gemma":[0.9984093,0.00045481502,0.00074308703,0.0001606026,0.0002143824,0.000017815117],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003408294,0.00021848574,0.0007872652,0.00018148555,0.0000828222,0.000004668947,0.00017285526,0.000108908585,0.00015265658],"category_scores_gemma":[0.000033052864,0.00013344703,0.000112683985,0.0001999705,0.0014746815,0.00020351166,0.000027202208,0.0003904736,0.0000048852344],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004166955,0.00015869444,0.0009411374,0.000009732902,0.00009612214,2.925908e-7,0.010834843,0.000057524627,0.97826296,0.0007814369,0.00003745778,0.0046528718],"study_design_scores_gemma":[0.0007752848,0.0021943254,0.2952203,0.00007281506,0.000028417264,0.00003512624,0.007540839,0.00003655338,0.6926186,0.0010909862,0.00029164777,0.000095131436],"about_ca_topic_score_codex":0.000068038564,"about_ca_topic_score_gemma":0.000018390132,"teacher_disagreement_score":0.29427916,"about_ca_system_score_codex":0.000020289632,"about_ca_system_score_gemma":0.00007565535,"threshold_uncertainty_score":0.54418117},"labels":[],"label_agreement":null},{"id":"W2225153589","doi":"10.1016/j.ajhg.2015.11.014","title":"Genomic Signatures of Selective Pressures and Introgression from Archaic Hominins at Human Innate Immunity Genes","year":2016,"lang":"en","type":"article","venue":"The American Journal of Human Genetics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":273,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre National de la Recherche Scientifique; Agence Nationale de la Recherche; Institut national de la recherche scientifique","keywords":"Biology; Innate immune system; Genome; Gene; Acquired immune system; Introgression; Genetics; Evolutionary biology; Natural selection; Candidate gene; Immunity; Genetic variation; Human genome; Selection (genetic algorithm); Immune system","score_opus":0.009216157674716311,"score_gpt":0.2528789486110946,"score_spread":0.2436627909363783,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2225153589","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98312163,0.016476903,0.000038226568,0.00014184584,0.00008602621,0.0000885515,0.000014255199,0.0000063592956,0.000026217678],"genre_scores_gemma":[0.9980639,0.0015926167,0.00007295433,0.000031036725,0.000069484086,0.0000016891936,0.00000578013,0.000015632471,0.0001468562],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99840003,0.0007612473,0.0004658733,0.000107586064,0.00006227543,0.00020300175],"domain_scores_gemma":[0.99818385,0.00032014906,0.0010726391,0.00025611947,0.000145122,0.000022099257],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041059474,0.0001459851,0.0003862025,0.00014110407,0.0002952126,0.000008614071,0.00036333004,0.000066237204,0.00007473774],"category_scores_gemma":[0.00004020942,0.00007992366,0.00008599338,0.00006842394,0.0011441018,0.000045783465,0.00019743232,0.00024039813,0.0000055915566],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00080503424,0.000034311248,0.009099795,0.0000033295871,0.00035472756,0.000002003056,0.001929318,0.000010660039,0.96200013,0.00003492789,0.0001870841,0.02553868],"study_design_scores_gemma":[0.0007602493,0.0013749495,0.32515565,0.00006267942,0.00010039,0.000039341776,0.00033862723,8.260887e-7,0.6706141,0.0006783498,0.00078113656,0.0000937077],"about_ca_topic_score_codex":0.000063691485,"about_ca_topic_score_gemma":0.000021891361,"teacher_disagreement_score":0.31605583,"about_ca_system_score_codex":0.00004171604,"about_ca_system_score_gemma":0.000047947924,"threshold_uncertainty_score":0.4215491},"labels":[],"label_agreement":null},{"id":"W2231680205","doi":"10.4049/jimmunol.192.supp.47.9","title":"Aryl hydrocarbon receptor attenuation of sub-chronic cigarette smoke-induced pulmonary neutrophilia is associated with retention of nuclear RelB and suppression of intercellular adhesion molecule-1 (CAM1P.233)","year":2014,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"","keywords":"Aryl hydrocarbon receptor; Neutrophilia; RELB; Inflammation; Immunology; Lung; Medicine; Chemistry; Transcription factor; Internal medicine; NFKB1; Biochemistry","score_opus":0.009436132833241009,"score_gpt":0.2020335611293887,"score_spread":0.19259742829614768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2231680205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99520314,0.003748113,0.000050057617,0.00048621968,0.0002772713,0.00017529953,0.0000044155777,0.000009341349,0.000046126763],"genre_scores_gemma":[0.9980113,0.0018422992,0.000007723722,0.00002056408,0.000020106481,0.0000012767341,0.00003762453,0.000022855165,0.000036236142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757665,0.0010419392,0.00093005097,0.000135731,0.000109185,0.00020644712],"domain_scores_gemma":[0.9969913,0.00028687314,0.0019761454,0.0003332054,0.00039969766,0.000012829764],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012728787,0.00017926002,0.0005631909,0.0002987535,0.00009085792,0.0000035399396,0.0002870779,0.00038229467,0.000058132075],"category_scores_gemma":[0.0002539725,0.00012262307,0.00013278809,0.00020111559,0.00036816264,0.00017900599,0.000099332276,0.00049882353,0.000004204392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044642575,0.000104616964,0.0004425532,0.000055494544,0.00045764545,0.0000024577023,0.00086665445,0.000008813108,0.99133456,0.00006281192,0.00009398098,0.0021061406],"study_design_scores_gemma":[0.0017787982,0.0040110857,0.02940398,0.0011406717,0.00025390348,0.00019538759,0.00027857648,0.00012768735,0.96250963,0.000120357974,0.00007071156,0.00010920021],"about_ca_topic_score_codex":0.000043089367,"about_ca_topic_score_gemma":0.000001888834,"teacher_disagreement_score":0.028961428,"about_ca_system_score_codex":0.000070799164,"about_ca_system_score_gemma":0.00006422398,"threshold_uncertainty_score":0.5000423},"labels":[],"label_agreement":null},{"id":"W2233683956","doi":"10.1016/j.celrep.2015.12.079","title":"PI5P Triggers ICAM-1 Degradation in Shigella Infected Cells, Thus Dampening Immune Cell Recruitment","year":2016,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Fondation pour la Recherche Médicale; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche; Advanced Foods and Materials Canada","keywords":"Shigella; Shigella flexneri; Internalization; Immune system; Microbiology; Cell biology; Biology; Pathogen; Secretion; Cell; Immunology; Bacteria; Salmonella; Biochemistry","score_opus":0.01851764647509304,"score_gpt":0.2353885998846627,"score_spread":0.21687095340956966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2233683956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98681897,0.0024782226,0.0003351052,0.00014435008,0.0012528789,0.0007427915,0.0000019148526,0.00010491022,0.0081208525],"genre_scores_gemma":[0.98018825,0.000509812,0.000078624355,0.000028049612,0.000022565533,0.00008219979,0.000137319,0.00002831238,0.018924871],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977251,0.00035770083,0.00093375024,0.0004408529,0.00007226265,0.00047029622],"domain_scores_gemma":[0.9985032,0.00024484302,0.0005642807,0.0005810458,0.00007804563,0.000028604878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008218942,0.00025055936,0.00034839,0.00027354693,0.0001357781,0.000022038716,0.0001303187,0.00033104586,0.0007087083],"category_scores_gemma":[0.00011805084,0.00018831526,0.00012671114,0.00023283025,0.00008707409,0.00022754338,0.00007728224,0.00022909777,0.00055795244],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017666798,0.00013970875,0.0021977238,0.000020776919,0.000021734671,0.00013070556,0.0002858853,0.000008671486,0.9843638,0.000016380443,0.00089267374,0.011745298],"study_design_scores_gemma":[0.0012811524,0.00012067268,0.006304854,0.000084861545,0.000026025895,0.00010246474,0.00007992345,0.0000018003418,0.925792,0.00005898848,0.06589709,0.00025016483],"about_ca_topic_score_codex":0.00011998424,"about_ca_topic_score_gemma":0.000013948573,"teacher_disagreement_score":0.06500442,"about_ca_system_score_codex":0.0001845089,"about_ca_system_score_gemma":0.00016311574,"threshold_uncertainty_score":0.7759859},"labels":[],"label_agreement":null},{"id":"W2235888773","doi":"10.1159/000410472","title":"Structure and Functions of Pseudomonas aeruginosa Lipopolysaccharide","year":2015,"lang":"en","type":"article","venue":"Antibiotics and chemotherapy/Antibiotica et chemotherapia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Pseudomonas aeruginosa; Microbiology; Lipopolysaccharide; Pseudomonas; Biology; Bacteria; Immunology; Genetics","score_opus":0.011629619693165684,"score_gpt":0.24008414100851322,"score_spread":0.22845452131534755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2235888773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99292475,0.002327325,0.0005005326,0.0026697326,0.00031237453,0.00025800825,0.000035811998,0.00007637248,0.00089506526],"genre_scores_gemma":[0.9955641,0.0014941678,0.00080551143,0.0008542331,0.000044182718,1.17356315e-7,0.000060754937,0.00004923448,0.0011276905],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854845,0.00012934973,0.00045255295,0.00040953432,0.00009558762,0.0003645239],"domain_scores_gemma":[0.99902076,0.00012275513,0.00022833246,0.00038741084,0.00016578908,0.000074984535],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003714553,0.0003346154,0.0004953863,0.00017461214,0.0001299535,0.000051528816,0.00016131047,0.00039865656,0.00017647125],"category_scores_gemma":[0.00006552768,0.00029043382,0.000085134205,0.00016233898,0.00051201583,0.00017624434,0.00007198825,0.00031311868,0.000024118568],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037283066,0.00013312217,0.010990092,0.00007287023,0.00033754288,0.0000020438022,0.001439189,0.0000021219607,0.9687413,0.0053155134,0.0012196513,0.011373711],"study_design_scores_gemma":[0.0029229305,0.00032332374,0.007971081,0.00007652189,0.00007305242,0.00014423773,0.00062524766,0.00005429789,0.97589153,0.00079394894,0.0107658105,0.00035803323],"about_ca_topic_score_codex":0.00009968168,"about_ca_topic_score_gemma":0.000015160396,"teacher_disagreement_score":0.011015678,"about_ca_system_score_codex":0.000018134395,"about_ca_system_score_gemma":0.000093769275,"threshold_uncertainty_score":0.99995476},"labels":[],"label_agreement":null},{"id":"W2236938929","doi":"10.1158/1055-9965.epi-15-0798","title":"Serum Endotoxins and Flagellin and Risk of Colorectal Cancer in the European Prospective Investigation into Cancer and Nutrition (EPIC) Cohort","year":2016,"lang":"en","type":"article","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Ontario; University of Toronto","funders":"World Cancer Research Fund; Medical Research Council; Hellenic Health Foundation; Instituto de Salud Carlos III; Wereld Kanker Onderzoek Fonds; Institut Gustave-Roussy; Deutsche Krebshilfe; Mutuelle Générale de l'Education Nationale; Associazione Italiana per la Ricerca sul Cancro; Cancerfonden; Institut National de la Santé et de la Recherche Médicale; World Health Organization; European Commission; Bundesministerium für Bildung und Forschung; Ligue Contre le Cancer; National Institute for Health and Care Research; Cancer Research UK; Deutsches Krebsforschungszentrum; Centre International de Recherche sur le Cancer","keywords":"European Prospective Investigation into Cancer and Nutrition; Flagellin; Medicine; Cancer; Prospective cohort study; EPIC; Colorectal cancer; Internal medicine; Cohort; Oncology","score_opus":0.014840389022974626,"score_gpt":0.28365853632493093,"score_spread":0.2688181473019563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2236938929","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95967996,0.03662075,0.00018526876,0.002173252,0.00025325036,0.00097408786,0.000052221032,0.00001895729,0.0000422558],"genre_scores_gemma":[0.938679,0.060461238,0.000090307105,0.000060857146,0.000040513936,0.00050059066,0.000029056215,0.0000118590615,0.00012658986],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9953734,0.0034270147,0.0005271167,0.00039808007,0.000029102257,0.000245257],"domain_scores_gemma":[0.9985407,0.0007769538,0.00045873047,0.0001302412,0.000070085414,0.000023282506],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032129446,0.00017889986,0.0003556188,0.00014281685,0.0001639681,0.0000056073663,0.000088205794,0.00021857818,0.000055482273],"category_scores_gemma":[0.00037773416,0.00011774521,0.00004982315,0.00013120781,0.0007963001,0.0002091717,0.000056966037,0.00017478871,0.0000032333148],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005409409,0.000023318404,0.74277794,0.00005735038,0.00030423157,6.3509367e-7,0.00076320657,0.0000013832388,0.19639173,0.00023817427,0.00021246585,0.058688596],"study_design_scores_gemma":[0.0019368924,0.00019004852,0.9385557,0.00045444668,0.00015843824,0.000012362454,0.00018538795,0.00002466339,0.052132227,0.0056587523,0.00055179594,0.00013928617],"about_ca_topic_score_codex":0.001998041,"about_ca_topic_score_gemma":0.0027220761,"teacher_disagreement_score":0.19577774,"about_ca_system_score_codex":0.00011218593,"about_ca_system_score_gemma":0.00006432671,"threshold_uncertainty_score":0.480151},"labels":[],"label_agreement":null},{"id":"W2239789730","doi":"10.1080/21645515.2015.1114195","title":"Induction of mucosal immunity through systemic immunization: Phantom or reality?","year":2016,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":167,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University; National Research Council Canada","funders":"","keywords":"Immunology; Immunity; Mucosal immunity; Immunization; Immune system; Medicine; Mucosal immunology; Humoral immunity","score_opus":0.0523191089041115,"score_gpt":0.3104717903929136,"score_spread":0.2581526814888021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2239789730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861681,0.007915016,0.0030337565,0.00046004137,0.0010121481,0.00049169676,0.000021776785,0.00020933837,0.00068813463],"genre_scores_gemma":[0.99155736,0.0019527444,0.00006109927,0.000086060354,0.00008429284,0.000031114883,0.00012771384,0.000055690227,0.006043951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997534,0.00067466195,0.0010231184,0.00028007393,0.00008749474,0.00040065174],"domain_scores_gemma":[0.9977514,0.0002605549,0.00061636366,0.0009778388,0.0003815322,0.000012310764],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005474132,0.00032633415,0.00052094425,0.0001960933,0.00043447077,0.000023310204,0.0005085932,0.0004075377,0.0015106861],"category_scores_gemma":[0.000078937584,0.00021406547,0.00016055541,0.0003510935,0.00019684124,0.00053281325,0.00011404124,0.00024585877,0.0002477176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001225304,0.00016312944,0.0007709817,0.00007450653,0.00043018637,0.0000013117525,0.0014244906,0.000002092714,0.97571206,0.0041300566,0.00033510535,0.015730793],"study_design_scores_gemma":[0.005944905,0.00065720774,0.016592866,0.00052068214,0.00018478735,0.00033120395,0.00086799666,0.0000020607733,0.92898726,0.0009658444,0.04444278,0.0005024292],"about_ca_topic_score_codex":0.00027741797,"about_ca_topic_score_gemma":0.000029347057,"teacher_disagreement_score":0.046724804,"about_ca_system_score_codex":0.00011852763,"about_ca_system_score_gemma":0.00013294691,"threshold_uncertainty_score":0.99940205},"labels":[],"label_agreement":null},{"id":"W2243694148","doi":"10.1371/journal.pone.0146333","title":"Expression and Polymorphism of Toll-Like Receptor 4 and Effect on NF-κB Mediated Inflammation in Colon Cancer Patients","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; McGill University; Montreal General Hospital","funders":"","keywords":"Colorectal cancer; TLR4; Inflammation; Single-nucleotide polymorphism; Internal medicine; Receptor; Medicine; Immunology; Population; Cancer; Biology; Oncology; Endocrinology; Gastroenterology; Genotype; Gene; Genetics","score_opus":0.009843395288978242,"score_gpt":0.2036558732652793,"score_spread":0.19381247797630108,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2243694148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986012,0.000645478,9.432562e-7,0.00024123347,0.00008615987,0.00033938652,0.000017634791,0.000016463297,0.00005149846],"genre_scores_gemma":[0.99890023,0.00056667655,0.00001002873,0.000019258887,0.000011598964,0.000056073008,0.000051741084,0.000008091276,0.0003762894],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992111,0.00024058096,0.00022670742,0.00014500813,0.00004671381,0.00012989854],"domain_scores_gemma":[0.9994002,0.00031665975,0.00013230616,0.00009694483,0.00004199639,0.0000118881935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017312024,0.0000972985,0.0002141583,0.00013432796,0.000040677587,0.000003163315,0.00004151059,0.00017073304,0.00016893745],"category_scores_gemma":[0.00022267769,0.00006597922,0.000012739263,0.00005453105,0.00007215632,0.00011963639,0.000035035107,0.0000754487,0.00004769627],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014321292,0.00014001115,0.0348275,0.00004733292,0.000047685207,2.5077847e-7,0.00028388074,5.0210236e-8,0.954333,0.000010782727,0.00007962296,0.008797721],"study_design_scores_gemma":[0.0028955287,0.0006679511,0.06118386,0.00081782497,0.000020218544,2.436243e-7,0.0000061145406,0.0000016765168,0.9341082,0.00000855345,0.00021162102,0.00007820005],"about_ca_topic_score_codex":0.00003761538,"about_ca_topic_score_gemma":0.000011781122,"teacher_disagreement_score":0.026356358,"about_ca_system_score_codex":0.000035499546,"about_ca_system_score_gemma":0.000015427911,"threshold_uncertainty_score":0.26905546},"labels":[],"label_agreement":null},{"id":"W2259380452","doi":"10.1089/aid.2014.5252.abstract","title":"Activation of Toll-like Receptor 2 (TLR2) Heterodimers by HIV-1 Proteins Significantly Increases HIV Infection and Inflammation","year":2014,"lang":"en","type":"article","venue":"AIDS Research and Human Retroviruses","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"TLR2; Human immunodeficiency virus (HIV); Inflammation; Receptor; Toll; Toll-like receptor; Immunology; Biology; Medicine; Virology; Innate immune system; Internal medicine; TLR4","score_opus":0.024911999724151115,"score_gpt":0.28996918654380116,"score_spread":0.26505718681965007,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2259380452","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998405,0.0002496836,0.00026324874,0.000106303465,0.00004199743,0.00047038417,0.0000198085,0.00004695057,0.00039662834],"genre_scores_gemma":[0.99760246,0.00026201206,0.00004586743,0.000018663097,0.000051715848,0.00006671734,0.00034238235,0.000016884644,0.0015932777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980104,0.0008557378,0.0003615005,0.00029255296,0.00013245961,0.00034736816],"domain_scores_gemma":[0.9989652,0.00037158668,0.00016294875,0.00022997086,0.00022643936,0.000043861695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012153472,0.00015570261,0.00025104,0.0004374474,0.0005103456,0.00006289409,0.00009846047,0.00021781326,0.00019473326],"category_scores_gemma":[0.0005412788,0.0001407884,0.000037702182,0.00018535634,0.000530668,0.00047301294,0.00008802347,0.00033504376,0.00008136646],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053287327,0.00007652814,0.03263033,0.00008903596,0.000066819055,1.506237e-7,0.00027266034,6.305879e-7,0.9535027,0.0017085937,0.0041329693,0.006986707],"study_design_scores_gemma":[0.0011935161,0.0021294574,0.049591992,0.000103257655,0.000014820019,0.0000043031805,0.00019052824,0.000003186823,0.9125581,0.00035615175,0.03368291,0.0001717782],"about_ca_topic_score_codex":0.00099741,"about_ca_topic_score_gemma":0.00003962407,"teacher_disagreement_score":0.040944595,"about_ca_system_score_codex":0.000049488033,"about_ca_system_score_gemma":0.000044769076,"threshold_uncertainty_score":0.57411844},"labels":[],"label_agreement":null},{"id":"W2260709854","doi":"10.1155/2002/941087","title":"Intestinal Epithelial Cells as a Source of Inflammatory Cytokines and Chemokines","year":2002,"lang":"en","type":"review","venue":"Canadian Journal of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":207,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Nova Scotia Health Research Foundation; Crohn's and Colitis Foundation of Canada; Natural Sciences and Engineering Research Council of Canada; Crohn's and Colitis Foundation","keywords":"Chemokine; Secretion; Inflammation; Immunology; Enterocyte; Chemotaxis; Biology; Cell biology; Receptor; Small intestine; Endocrinology","score_opus":0.013781853442443011,"score_gpt":0.22787976613952957,"score_spread":0.21409791269708656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2260709854","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03584926,0.96261156,0.000059106995,0.0000757122,0.0010749036,0.00020283398,0.000024088497,0.000005915413,0.000096612894],"genre_scores_gemma":[0.008164486,0.99051166,0.000045116543,0.00008216188,0.00020385113,0.0000072019475,0.000029349423,0.0000487042,0.00090748706],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9974368,0.0005772015,0.0012631564,0.00019220538,0.000040659874,0.0004899431],"domain_scores_gemma":[0.9977822,0.00017652623,0.0014768095,0.00022236574,0.00020315281,0.00013897457],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004288896,0.00036405862,0.0016981211,0.0009526314,0.00008889224,0.000015925638,0.00041466457,0.00048643377,0.00048216587],"category_scores_gemma":[0.0002359048,0.0003038851,0.00039905103,0.000097085525,0.0005859553,0.0000947048,0.0000463874,0.0007464555,0.00008753108],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010962146,0.00007063752,0.0015140723,0.0059070974,0.00224677,0.0006459032,0.00079983147,0.000006258683,0.007536228,0.00015189538,0.00803112,0.971994],"study_design_scores_gemma":[0.00077836803,0.0012943766,0.00007995391,0.0025289564,0.0005441931,0.012599416,0.000029904495,3.7835196e-7,0.0007838061,0.000015645373,0.9812048,0.00014017342],"about_ca_topic_score_codex":0.0004694216,"about_ca_topic_score_gemma":0.00079224835,"teacher_disagreement_score":0.97317374,"about_ca_system_score_codex":0.00008859178,"about_ca_system_score_gemma":0.00075113366,"threshold_uncertainty_score":0.99994135},"labels":[],"label_agreement":null},{"id":"W2260776504","doi":"10.1096/fasebj.22.1_supplement.675.4","title":"Murine CD1d‐restricted gamma‐delta T cells respond to cardiolipin","year":2008,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"CD1D; Cardiolipin; Biology; Natural killer T cell; Immune system; CD1; T cell; T-cell receptor; Antigen; Molecular biology; Interleukin 21; Splenocyte; Cell biology; Immunology; Phospholipid; Biochemistry","score_opus":0.015342721939383526,"score_gpt":0.2240796860101632,"score_spread":0.20873696407077968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2260776504","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99457294,0.001262129,0.00046641362,0.0010557479,0.0011077697,0.0001841685,0.000011345828,0.00004161646,0.0012978576],"genre_scores_gemma":[0.9863627,0.00051121606,0.00006642691,0.00033289578,0.00025496946,0.0000065805853,0.00002044941,0.000017654178,0.012427086],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833393,0.0006415774,0.0003883967,0.00014258342,0.00007846427,0.00041502077],"domain_scores_gemma":[0.9991361,0.00018195744,0.00014759059,0.0003594899,0.00012583383,0.000049026516],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00054617424,0.00016517672,0.00023990545,0.0002227962,0.00074864726,0.00002690239,0.0004036215,0.00013866759,0.0006608406],"category_scores_gemma":[0.00015154418,0.000109772256,0.00015402379,0.000273318,0.00012489676,0.00012014414,0.000089607594,0.0005821719,0.0021524534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010005553,0.000025307061,0.00013241381,0.0000017455604,0.000121397,0.00009019378,0.00095398864,0.00013196593,0.96478766,0.000041162835,0.030928649,0.0017849508],"study_design_scores_gemma":[0.001002534,0.00023016434,0.008133583,0.000022653581,0.000033360102,0.003655896,0.00018513875,0.0000035431233,0.8675919,0.000032206884,0.11896121,0.00014780267],"about_ca_topic_score_codex":0.000041617353,"about_ca_topic_score_gemma":0.0000030019721,"teacher_disagreement_score":0.09719576,"about_ca_system_score_codex":0.00006272609,"about_ca_system_score_gemma":0.00016126294,"threshold_uncertainty_score":0.9986245},"labels":[],"label_agreement":null},{"id":"W2270886897","doi":"10.1159/000443142","title":"Alterations in Monocyte Phenotypes and Functions after a Hip Fracture in Elderly Individuals: A 6-Month Longitudinal Study","year":2016,"lang":"en","type":"article","venue":"Gerontology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health and Social Services Centre University Institute of Geriatrics of Sherbrooke; Centre Hospitalier Universitaire de Sherbrooke; Université de Sherbrooke","funders":"Economic and Social Research Council; Medical Research Council; Age UK; Wellcome Trust","keywords":"CCL2; Monocyte; Inflammation; Phagocytosis; Internal medicine; Chemokine; Endocrinology; Medicine; Immunology","score_opus":0.024402769696402208,"score_gpt":0.2744649858080883,"score_spread":0.2500622161116861,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2270886897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99365616,0.0030957966,0.0006997464,0.0017038304,0.00021097984,0.00039296446,0.0000073091537,0.000027136815,0.00020606793],"genre_scores_gemma":[0.9984188,0.000040366405,0.000046590456,0.000084745996,0.000020241961,0.00024105993,0.000016897118,0.000008678213,0.0011225874],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9985685,0.00044660183,0.00033921376,0.0003038137,0.000023681774,0.00031820498],"domain_scores_gemma":[0.99941784,0.00024930658,0.00007312098,0.00021713493,0.00002871241,0.00001390083],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028625972,0.00015258118,0.00027118754,0.00029310293,0.00008075812,0.000013571043,0.00008670454,0.00024058465,0.00050698646],"category_scores_gemma":[0.00009761283,0.00011094215,0.00002873808,0.00010622771,0.00010986712,0.00023065523,0.000050345865,0.00020949556,0.00019206495],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018818976,0.00056760834,0.90859276,0.000008830766,0.00017137405,0.000056237222,0.007476961,0.0000065602744,0.014393235,0.00026141657,0.0005432566,0.06603984],"study_design_scores_gemma":[0.003095892,0.00061566796,0.9865527,0.000027954457,0.000028098966,0.000048613507,0.0007944269,0.0000020460325,0.000673993,0.00025465756,0.007755105,0.00015080441],"about_ca_topic_score_codex":0.00068339106,"about_ca_topic_score_gemma":0.011350961,"teacher_disagreement_score":0.077959955,"about_ca_system_score_codex":0.000058682344,"about_ca_system_score_gemma":0.000047773814,"threshold_uncertainty_score":0.63341033},"labels":[],"label_agreement":null},{"id":"W2274892172","doi":"10.4049/jimmunol.190.supp.113.8","title":"GITR potentiates anti-viral T cell immunity by limiting regulatory T cells (P1015)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Lymphocytic choriomeningitis; Immune system; FOXP3; Immunology; CD8; Biology; T cell; Spleen; Population; Cytotoxic T cell; Medicine; In vitro","score_opus":0.005158122039436836,"score_gpt":0.18748269144573548,"score_spread":0.18232456940629865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2274892172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97393256,0.022896225,0.00017877274,0.00089298206,0.0012005032,0.0001830334,0.000003425802,0.00002864893,0.00068386405],"genre_scores_gemma":[0.9954325,0.0016888792,0.000053285192,0.00022136538,0.000052714797,0.0000036148251,0.00001800823,0.000025379279,0.0025042726],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970268,0.0014042776,0.00088413304,0.00011362298,0.0000688894,0.0005022511],"domain_scores_gemma":[0.9977382,0.00048773247,0.0009787815,0.0004464626,0.00032833053,0.000020510988],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012670185,0.00023733397,0.00046032705,0.00019622174,0.00043034795,0.000033406453,0.00078291615,0.00034802515,0.0010276953],"category_scores_gemma":[0.00010933578,0.00016039229,0.00020653247,0.00012943245,0.00048235126,0.00043915227,0.000183421,0.0010422354,0.0012955603],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024658808,0.000111172005,0.00015980187,0.000008301283,0.00030431914,0.0000028660781,0.00065539515,0.000016610298,0.9804286,0.00006644518,0.014663156,0.0033367658],"study_design_scores_gemma":[0.0013119159,0.00048753904,0.010197694,0.000035613182,0.00010474227,0.0005044492,0.0016136795,0.0000060344255,0.9737502,0.00022168436,0.011585845,0.00018064458],"about_ca_topic_score_codex":0.00017618154,"about_ca_topic_score_gemma":8.723902e-7,"teacher_disagreement_score":0.021499936,"about_ca_system_score_codex":0.000059268274,"about_ca_system_score_gemma":0.0001017613,"threshold_uncertainty_score":0.9998855},"labels":[],"label_agreement":null},{"id":"W2281176409","doi":"10.1096/fasebj.27.1_supplement.lb435","title":"New anti‐inflammatory benefits of antibiotics: Tulathromycin promotes apoptosis and efferocytosis, and inhibits pro‐inflammatory CXCL8 production in a model of porcine pleuropneumonia","year":2013,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Pfizer","keywords":"Efferocytosis; Apoptosis; Inflammation; Pleuropneumonia; TUNEL assay; In vivo; Immunology; Interleukin 8; Medicine; Microbiology; Macrophage; Chemistry; Biology; In vitro; Biochemistry","score_opus":0.011776779812693006,"score_gpt":0.20582385454441768,"score_spread":0.19404707473172467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2281176409","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99584085,0.0028516897,0.000041929598,0.00053430576,0.00013557405,0.0005563924,0.000003894138,0.000015034694,0.000020310785],"genre_scores_gemma":[0.9984552,0.0010952746,0.0001867656,0.000012087972,0.00004305723,0.0000016780735,0.0000063051134,0.00001956932,0.00018002234],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984578,0.00026684374,0.00072091795,0.0002002977,0.00008527178,0.00026885764],"domain_scores_gemma":[0.99897945,0.00007721871,0.0005047959,0.00023560328,0.00016663241,0.000036316833],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007279294,0.00020437733,0.00040557174,0.00027398553,0.00016020528,0.000024302119,0.00015085345,0.00017121657,0.00002920159],"category_scores_gemma":[0.00014716049,0.00014432546,0.00005633426,0.00013320937,0.00022275162,0.0003704336,0.00009684566,0.00039637272,0.000010089825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018944744,0.000044640354,0.016877832,0.000108774395,0.00008040253,5.129782e-7,0.0014619703,0.00039053068,0.9743704,0.00011707867,0.00007992837,0.006278467],"study_design_scores_gemma":[0.0010778628,0.00019031658,0.09470889,0.00039096698,0.000054678334,0.00021990789,0.0001763234,0.00028380228,0.9025447,0.00021923198,0.000004566784,0.00012878129],"about_ca_topic_score_codex":0.000053544147,"about_ca_topic_score_gemma":0.000006974436,"teacher_disagreement_score":0.07783106,"about_ca_system_score_codex":0.000023905375,"about_ca_system_score_gemma":0.0001291007,"threshold_uncertainty_score":0.5885421},"labels":[],"label_agreement":null},{"id":"W2297180757","doi":"10.4049/jimmunol.182.supp.134.55","title":"Exploring the development of endotoxin tolerance and anti-endotoxin activity of LL-37 in mammalian cells (134.55)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Immune system; Innate immune system; Inflammation; Immunology; Biology; Sepsis; Immunity; Peripheral blood mononuclear cell; Genetics","score_opus":0.028405586838045185,"score_gpt":0.2369727428951441,"score_spread":0.2085671560570989,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2297180757","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99406546,0.004557877,0.00013675488,0.00058902026,0.00037368608,0.0001678436,0.0000012793018,0.0000041616554,0.00010389262],"genre_scores_gemma":[0.998156,0.0015646657,0.00014042843,0.000028359413,0.000014941751,0.0000033667259,8.2027685e-7,0.000006516374,0.00008486511],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980388,0.000763664,0.00079567835,0.00008598281,0.000056266203,0.00025959627],"domain_scores_gemma":[0.99847645,0.0004245234,0.0007417506,0.00024722837,0.00010167935,0.000008356759],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015348541,0.00014636548,0.00046165087,0.00018164507,0.00011880568,0.0000045283327,0.00039226835,0.00010978157,0.000038673195],"category_scores_gemma":[0.00009600546,0.00008874133,0.00007422004,0.0001695482,0.00028283286,0.00022517687,0.00007147421,0.00051050587,0.000011504596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014063314,0.000104350795,0.00018538455,0.000011216141,0.0001191983,0.0000032267897,0.0046161627,0.000059077454,0.9564749,0.00009883173,0.000023290871,0.036898047],"study_design_scores_gemma":[0.0011487501,0.00024257088,0.12557499,0.00008621468,0.000024357787,0.00018326033,0.00079724,0.0000027033784,0.870829,0.0000560031,0.0009821382,0.00007277922],"about_ca_topic_score_codex":0.000037829734,"about_ca_topic_score_gemma":0.000015219974,"teacher_disagreement_score":0.1253896,"about_ca_system_score_codex":0.000038851977,"about_ca_system_score_gemma":0.00012538464,"threshold_uncertainty_score":0.36187667},"labels":[],"label_agreement":null},{"id":"W2304898873","doi":"10.1038/labinvest.2016.46","title":"Inhibition of endotoxin-induced airway epithelial cell injury by a novel family of pyrrol derivates","year":2016,"lang":"en","type":"article","venue":"Laboratory Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"Instituto de Salud Carlos III","keywords":"Downregulation and upregulation; ARDS; Lipopolysaccharide; Apoptosis; Inflammation; Pharmacology; A549 cell; Tumor necrosis factor alpha; Immunology; Medicine; Chemistry; Lung; Internal medicine; Biochemistry","score_opus":0.00909097882989065,"score_gpt":0.2048285837576111,"score_spread":0.19573760492772044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2304898873","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812716,0.00030327297,0.0004091158,0.00018956978,0.0002446578,0.0002445464,0.0002966788,0.000043205036,0.00014176192],"genre_scores_gemma":[0.99935216,0.00004303173,0.00012783235,0.00013224223,0.000020755371,0.000028887096,0.00012356068,0.000016434808,0.00015507502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988244,0.00022698013,0.0005242524,0.00018520324,0.00006434462,0.00017479266],"domain_scores_gemma":[0.99886966,0.00012718198,0.00046107,0.00023299264,0.00028809576,0.000021002827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032180586,0.00014822805,0.0002327357,0.00014466222,0.00006163111,0.0000043156,0.00009625519,0.00026709886,0.00007110238],"category_scores_gemma":[0.00018498316,0.00011698134,0.000049668903,0.00024949727,0.00025983315,0.00032235536,0.000028564386,0.000099860474,0.00009914664],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018653966,0.00006489876,0.0004606709,0.000039479357,0.00002739669,1.5676514e-7,0.00039074017,4.293781e-7,0.99643,0.00042867067,0.0008136697,0.0011573503],"study_design_scores_gemma":[0.0013789526,0.0002878615,0.0018460468,0.00011526244,0.000022148415,6.796242e-7,0.000094482304,0.0000014359729,0.9943438,0.00019226584,0.0015811449,0.00013592448],"about_ca_topic_score_codex":0.00003654442,"about_ca_topic_score_gemma":0.00000179857,"teacher_disagreement_score":0.0020862026,"about_ca_system_score_codex":0.000039490056,"about_ca_system_score_gemma":0.00019323536,"threshold_uncertainty_score":0.47703606},"labels":[],"label_agreement":null},{"id":"W2309481737","doi":"10.14740/jh249w","title":"Quantitative Expression of Toll-Like Receptors TLR-7 and TLR-9 on Peripheral Blood Mononuclear Cells in Leukemias","year":2016,"lang":"en","type":"article","venue":"Journal of Hematology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Peripheral blood mononuclear cell; Immunology; Medicine; Leukemia; Toll-like receptor; Myeloid leukemia; Immune system; Innate immune system; Receptor; Chronic lymphocytic leukemia; Acute leukemia; Myeloid; Biology; Internal medicine; In vitro","score_opus":0.010319244929918245,"score_gpt":0.23927395278855315,"score_spread":0.22895470785863492,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2309481737","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966104,0.001954536,0.000095636424,0.00039092737,0.0006274738,0.00008125395,0.0000017744545,0.0000054302723,0.00023256104],"genre_scores_gemma":[0.9982698,0.0006636046,0.00036481218,0.00004603831,0.00001222504,0.0000016951532,0.0000010390605,0.000011520891,0.0006292869],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854946,0.00042382505,0.0006554888,0.00012688347,0.000042816744,0.00020152314],"domain_scores_gemma":[0.99876744,0.00045270147,0.00054277363,0.00012654097,0.000091062095,0.000019474932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039974332,0.00012904947,0.000490291,0.00027406265,0.000044021246,0.0000035898117,0.00013181714,0.00025990503,0.000348066],"category_scores_gemma":[0.00015969049,0.00008150083,0.00008638069,0.00006639292,0.00018132299,0.00016248037,0.000040777588,0.00023755926,0.00004088271],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025699146,0.00013107619,0.0010672949,0.000022313567,0.00007262153,0.00004064677,0.0011438442,0.0000060612583,0.98972374,0.0013683666,0.002337452,0.0015166895],"study_design_scores_gemma":[0.0032444757,0.0016571649,0.0011306299,0.0003848905,0.000026617243,0.0007829103,0.0008161944,0.000001851803,0.98692757,0.00030931827,0.004613559,0.00010482655],"about_ca_topic_score_codex":0.000007726571,"about_ca_topic_score_gemma":0.0000048006455,"teacher_disagreement_score":0.002796158,"about_ca_system_score_codex":0.000037514896,"about_ca_system_score_gemma":0.0000737823,"threshold_uncertainty_score":0.38110787},"labels":[],"label_agreement":null},{"id":"W2310387205","doi":"10.1093/jnen/59.2.129","title":"B7 Expression and Antigen Presentation by Human Brain Endothelial Cells: Requirement for Proinflammatory Cytokines","year":2000,"lang":"en","type":"article","venue":"Journal of Neuropathology & Experimental Neurology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Proinflammatory cytokine; Immune system; Biology; Immunology; Antigen presentation; Cytokine; Antigen; T cell; Microglia; Antigen-presenting cell; Cell biology; Inflammation","score_opus":0.011732426403722084,"score_gpt":0.27027853683185643,"score_spread":0.25854611042813436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2310387205","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99583876,0.0018764224,0.00008225389,0.00076295016,0.00082362053,0.0004591453,0.000015416548,0.000028850685,0.00011259273],"genre_scores_gemma":[0.99803114,0.0002001981,0.00009578912,0.00079263124,0.00015595058,0.000028722716,0.000031912306,0.000037130332,0.00062655547],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975684,0.00081281376,0.0008408013,0.00032160088,0.0000670449,0.00038929356],"domain_scores_gemma":[0.9989105,0.00026483406,0.00052075024,0.00019016645,0.00007077443,0.00004297188],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005695344,0.00024268708,0.00041247747,0.0001782771,0.00027637716,0.000018368148,0.00022786304,0.00024812797,0.00023874667],"category_scores_gemma":[0.000057945323,0.00021620054,0.00013643493,0.000048295642,0.0003266922,0.00027258374,0.00006398341,0.00032941307,0.000025434041],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038561905,0.0002264351,0.00055895804,0.000011149523,0.000029810382,0.0001252483,0.00058492547,0.0000055821383,0.98645204,0.00003335364,0.0066481945,0.0014681049],"study_design_scores_gemma":[0.0033814216,0.0039442023,0.0035917794,0.000012101233,0.00002009167,0.0019878407,0.00009084857,0.0000031879197,0.9234562,0.000046661266,0.0633182,0.00014749443],"about_ca_topic_score_codex":0.0000040664763,"about_ca_topic_score_gemma":7.210016e-7,"teacher_disagreement_score":0.06299588,"about_ca_system_score_codex":0.000017946373,"about_ca_system_score_gemma":0.000027625178,"threshold_uncertainty_score":0.8816402},"labels":[],"label_agreement":null},{"id":"W2312165991","doi":"10.1007/s00441-016-2387-9","title":"The role of IL-1β in Pseudomonas aeruginosa in lung infection","year":2016,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Pseudomonas aeruginosa; Lung; Immune system; Lung infection; Inflammation; Microbiology; Cytokine; Immunology; Interleukin; Biology; Bacteria; Medicine; Internal medicine","score_opus":0.02970677337362158,"score_gpt":0.35902070920828455,"score_spread":0.32931393583466295,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2312165991","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0040883273,0.9915799,0.000001092926,0.000032491436,0.00012819601,0.0006458924,0.000004641837,0.000006401552,0.0035130526],"genre_scores_gemma":[0.008975255,0.98555565,9.633043e-7,5.369091e-7,0.000028727147,0.00011167433,0.00003485447,0.000015100738,0.0052772295],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99715054,0.0016116814,0.0004959617,0.00024378898,0.0000676499,0.00043040435],"domain_scores_gemma":[0.9982988,0.0012015693,0.00012484302,0.00028834905,0.000072409355,0.000013993851],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021635585,0.00016242386,0.000569811,0.00053227856,0.00014876401,0.000019365625,0.00020345656,0.00047265767,0.000094562696],"category_scores_gemma":[0.00015821426,0.00009654506,0.00007349066,0.00038079766,0.00027857083,0.00006589635,0.00017145424,0.0007400551,0.0003472879],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000049848553,0.00003710127,0.00012082623,0.0015456649,0.000024522878,0.0000048386046,0.0001255209,3.7775276e-8,0.0077071944,0.000568399,0.00016686309,0.9896492],"study_design_scores_gemma":[0.0003063857,0.00007550231,0.00012558684,0.00287884,0.000012960811,0.000018574137,0.000040178227,5.3984616e-7,0.013801883,0.00021612523,0.98242146,0.000101971586],"about_ca_topic_score_codex":0.00044240413,"about_ca_topic_score_gemma":0.000098438315,"teacher_disagreement_score":0.9895472,"about_ca_system_score_codex":0.00009194819,"about_ca_system_score_gemma":0.00021853183,"threshold_uncertainty_score":0.4463799},"labels":[],"label_agreement":null},{"id":"W2312601304","doi":"10.1152/physrev.00009.2014","title":"NOD-Like Receptors: Versatile Cytosolic Sentinels","year":2014,"lang":"en","type":"review","venue":"Physiological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":352,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Biology; Receptor; Pattern recognition receptor; Cell biology; Innate immune system; Nod; Effector; Immune receptor; Acquired immune system; Rhodopsin-like receptors; Immune system; Gene; Genetics","score_opus":0.09017998726601302,"score_gpt":0.34898901382871383,"score_spread":0.25880902656270083,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2312601304","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020329882,0.9957,0.000030167708,0.000022443088,0.0019820558,0.0014754294,0.000009931609,0.0001371655,0.0006224844],"genre_scores_gemma":[0.00001266575,0.991899,0.00004839159,0.0002419515,0.0003090681,0.00049413845,0.0016499786,0.00004848185,0.005296319],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99361223,0.0032296884,0.0016675593,0.00077112915,0.000056365567,0.00066302594],"domain_scores_gemma":[0.9972545,0.0005392177,0.0011498622,0.0009532774,0.000056482448,0.000046671845],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010423682,0.00080383266,0.0044665863,0.0001453107,0.00020742984,0.000029744248,0.00075155904,0.0010925175,0.0038026087],"category_scores_gemma":[0.0008808464,0.00048263208,0.0017098918,0.00034023233,0.00022331746,0.000097546406,0.00029280756,0.0009704528,0.049610548],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000017502001,0.000064787724,1.1372855e-7,0.004967065,0.00015527733,0.0000012992305,0.00002189032,5.7306263e-8,0.0013926383,0.00015901684,0.25554392,0.73767644],"study_design_scores_gemma":[0.00020470454,0.00015330069,0.00000284371,0.006228965,0.0004546499,0.00002832773,0.000002884002,2.701885e-7,0.000067616165,0.000029920515,0.9922975,0.00052902853],"about_ca_topic_score_codex":0.000006133009,"about_ca_topic_score_gemma":3.2330937e-7,"teacher_disagreement_score":0.7371474,"about_ca_system_score_codex":0.0000861099,"about_ca_system_score_gemma":0.000092366754,"threshold_uncertainty_score":0.99976254},"labels":[],"label_agreement":null},{"id":"W2314252327","doi":"10.1097/ccm.0b013e31825f7ac7","title":"Location, location, location—Unraveling the nuances of innate immune regulation*","year":2012,"lang":"en","type":"letter","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Medicine; Innate immune system; Gerontology; Immune system; Immunology","score_opus":0.01734067802641651,"score_gpt":0.28101758995840714,"score_spread":0.2636769119319906,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2314252327","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010534624,0.23312034,0.009455757,0.74892026,0.004622987,0.0007830116,0.000015417283,0.000111539164,0.0019172607],"genre_scores_gemma":[0.94595,0.00021150165,0.00003750931,0.046224874,0.0024240664,0.00010118244,0.0026590629,0.000051178184,0.0023406583],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99702287,0.0006827219,0.0011966001,0.00036523858,0.00022864224,0.00050392275],"domain_scores_gemma":[0.99338657,0.0014196034,0.00038849126,0.00089800643,0.0038832515,0.00002407057],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00088815525,0.0003727818,0.0006539496,0.00027412613,0.0003910287,0.000016539469,0.00052906317,0.0010002088,0.0009725652],"category_scores_gemma":[0.0033995574,0.00025540876,0.00009376496,0.0006768466,0.0018171016,0.00019588489,0.00008146684,0.0013347703,0.00042211436],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002654455,0.00008511605,0.00026397026,0.0063605346,0.00046148483,0.000010533647,0.013824988,0.000107761734,0.030349191,0.017715164,0.91457194,0.015983852],"study_design_scores_gemma":[0.0010833573,0.00027775276,0.005984589,0.0024338488,0.00075543293,0.000108461456,0.0047437907,0.000026216845,0.027023865,0.0011298334,0.95591325,0.00051960896],"about_ca_topic_score_codex":0.0002014571,"about_ca_topic_score_gemma":0.0000060009384,"teacher_disagreement_score":0.9448965,"about_ca_system_score_codex":0.00012199867,"about_ca_system_score_gemma":0.00034270497,"threshold_uncertainty_score":0.9999898},"labels":[],"label_agreement":null},{"id":"W2316508618","doi":"10.1097/shk.0000000000000132","title":"Effect of Deletion of cIAP2 on Intestinal Microcirculation in Mouse Endotoxemia and Polybacterial Sepsis","year":2014,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Intravital microscopy; Microcirculation; Sepsis; Lipopolysaccharide; Immunology; Inflammation; Video microscopy; Biology; Medicine; Internal medicine; Cell biology","score_opus":0.0037712279684715046,"score_gpt":0.22240352209879963,"score_spread":0.21863229413032811,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316508618","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99930114,0.000070192764,0.00011465764,0.000020346713,0.00012572223,0.00013314367,0.00000194584,0.0000086129185,0.00022422249],"genre_scores_gemma":[0.9997799,0.000008748621,0.000019749203,0.000009271705,0.000012338149,0.000003727532,0.00004618436,0.0000048986008,0.000115214985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924916,0.0003377432,0.00021434823,0.00009257726,0.000017365286,0.00008879912],"domain_scores_gemma":[0.99952704,0.00023962061,0.00011102923,0.000094733696,0.000023207243,0.000004382959],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003495302,0.00007154304,0.00017307891,0.00011750742,0.000019850133,0.0000021529568,0.00003946092,0.00011041832,0.00004627156],"category_scores_gemma":[0.00020236602,0.00006280313,0.000030889652,0.000049816168,0.000051719,0.000040119383,0.000016397888,0.0000802319,0.000017457456],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012299286,0.000015309002,0.006126874,0.00004480265,0.000012211965,1.1692146e-7,0.00013110196,0.000005776936,0.9775652,0.0001302001,0.00002709583,0.01471134],"study_design_scores_gemma":[0.0012379184,0.0007651123,0.022935497,0.000059502916,0.000011336088,0.0000067379324,0.000008682223,0.000043992906,0.9745793,0.000030721574,0.00027188484,0.00004936824],"about_ca_topic_score_codex":0.000080783975,"about_ca_topic_score_gemma":0.0000067744772,"teacher_disagreement_score":0.016808623,"about_ca_system_score_codex":0.000017990375,"about_ca_system_score_gemma":0.000010512394,"threshold_uncertainty_score":0.25610372},"labels":[],"label_agreement":null},{"id":"W2316550831","doi":"10.1155/2006/195957","title":"Tweaking Innate Immunity: The Promise of Innate Immunologicals as Anti‐Infectives","year":2006,"lang":"en","type":"article","venue":"Canadian Journal of Infectious Diseases and Medical Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Canadian Institutes of Health Research; Ontario HIV Treatment Network; Bill and Melinda Gates Foundation","keywords":"Innate immune system; Biology; Pattern recognition receptor; TLR3; Acquired immune system; Immune system; Intrinsic immunity; TLR7; Immunology; TLR9; Innate lymphoid cell; Toll-like receptor; Proinflammatory cytokine; Antimicrobial peptides; Immunity; Chemokine; Microbiology; Inflammation; Antimicrobial; Genetics; Gene; Gene expression","score_opus":0.00425192866404711,"score_gpt":0.21570593603995844,"score_spread":0.21145400737591133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2316550831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97522146,0.022109762,0.00003153758,0.0009858883,0.00072022574,0.00018483776,0.000029436778,0.000013394285,0.0007034784],"genre_scores_gemma":[0.9986653,0.0007906527,0.0000024122828,0.0003196662,0.00007694543,0.000005952288,0.000037300404,0.000011864608,0.00008991212],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9979824,0.00069944613,0.0007111539,0.00014957052,0.000036770332,0.0004206622],"domain_scores_gemma":[0.99849236,0.000420502,0.0005205092,0.00018327586,0.0002658873,0.000117465184],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006791493,0.00019660984,0.0005095266,0.00033800025,0.00036215945,0.00002411207,0.00029744438,0.00038054105,0.0007031003],"category_scores_gemma":[0.0011838286,0.00012498566,0.00018792164,0.0002038214,0.0014026182,0.00010693545,0.000059130005,0.00058775954,0.000026467029],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005156001,0.0003290225,0.11216998,0.00009628455,0.0011139106,0.00024873426,0.0008422413,0.000029286877,0.83526576,0.009245569,0.0027459394,0.037397657],"study_design_scores_gemma":[0.008746894,0.0032697956,0.66747177,0.00084637984,0.0006462173,0.017468944,0.0011465276,0.000006258815,0.09799171,0.008452327,0.19311464,0.00083853345],"about_ca_topic_score_codex":0.0081990715,"about_ca_topic_score_gemma":0.0013277099,"teacher_disagreement_score":0.73727405,"about_ca_system_score_codex":0.000073864154,"about_ca_system_score_gemma":0.0011799253,"threshold_uncertainty_score":0.9984054},"labels":[],"label_agreement":null},{"id":"W2317249620","doi":"10.1097/pcc.0b013e31825b84ce","title":"Effect of continuous blood purification on concentrations of plasma vasoactive substances and cardiac function in endotoxic shock","year":2012,"lang":"en","type":"article","venue":"Pediatric Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Lipopolysaccharide; Septic shock; Medicine; Shock (circulatory); Whole blood; Sepsis; Pharmacology; Internal medicine","score_opus":0.007088488126275218,"score_gpt":0.26238135138339286,"score_spread":0.25529286325711764,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2317249620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9666644,0.03167799,0.000038100123,0.000096402684,0.0006357215,0.00031230325,0.00001489822,0.000012458723,0.0005477623],"genre_scores_gemma":[0.9991307,0.0005691546,0.0000051097845,0.000006657365,0.00014945309,0.000035298093,0.000077717115,0.000006011042,0.000019870517],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988126,0.0004355802,0.00035150215,0.00013198175,0.00006839041,0.00019992377],"domain_scores_gemma":[0.9976957,0.001943395,0.00009212831,0.00012001209,0.00012437935,0.000024408017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00049356715,0.00011153103,0.00035704425,0.00016534103,0.00004279642,0.0000015714425,0.00004244258,0.00013991423,0.000058509828],"category_scores_gemma":[0.00088927,0.000086892156,0.00004093691,0.00018200236,0.00022457009,0.00009976288,0.000009691619,0.00016608062,0.000007955128],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002182801,0.0002191498,0.3479994,0.00070899277,0.000115933355,0.0000014323691,0.0048127314,0.0000018678633,0.62309706,0.009592896,0.000111225236,0.011156547],"study_design_scores_gemma":[0.0038713757,0.0048266146,0.17982797,0.00009117386,0.0013366499,0.000009301329,0.0031306623,0.000003026882,0.8063304,0.00003258338,0.00037987472,0.00016036996],"about_ca_topic_score_codex":0.0000383583,"about_ca_topic_score_gemma":0.000002311951,"teacher_disagreement_score":0.18323337,"about_ca_system_score_codex":0.000023328557,"about_ca_system_score_gemma":0.00002420606,"threshold_uncertainty_score":0.35433593},"labels":[],"label_agreement":null},{"id":"W2319707062","doi":"10.1097/shk.0b013e318296e65b","title":"CD4+CD25+ Regulatory T Cells Attenuate Lipopolysaccharide-Induced Systemic Inflammatory Responses and Promotes Survival in Murine Escherichia coli Infection","year":2013,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Proinflammatory cytokine; IL-2 receptor; FOXP3; Immunology; Lipopolysaccharide; Immune system; Inflammation; Adoptive cell transfer; Immune tolerance; Biology; Medicine; T cell","score_opus":0.01099129124871094,"score_gpt":0.22170234765775254,"score_spread":0.2107110564090416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2319707062","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9968743,0.00094185374,0.000015148818,0.00017878198,0.00088796427,0.00078112504,0.0000029076286,0.00013066604,0.00018730413],"genre_scores_gemma":[0.9972162,0.00016774642,0.000021718006,0.000047456557,0.000056419594,0.000089324814,0.000017172635,0.000030756477,0.0023532002],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997839,0.0007581846,0.0005821684,0.00034881753,0.000062931744,0.00040893862],"domain_scores_gemma":[0.9990517,0.00021481914,0.0002199202,0.0003673805,0.00011202334,0.000034184955],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00073230575,0.00025983018,0.0003849633,0.00030662637,0.00016260016,0.00004468668,0.00012571254,0.00038276627,0.00020702805],"category_scores_gemma":[0.00017166551,0.0002450713,0.000066626795,0.00015874497,0.00011414973,0.00037587548,0.00011098946,0.0003816414,0.0008653147],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030491877,0.000037114274,0.013133374,0.000090750174,0.00006151888,0.000005396438,0.0004724096,0.000004158784,0.98248893,0.00012086957,0.00016771478,0.00311283],"study_design_scores_gemma":[0.0011205298,0.00017604594,0.1999567,0.00018206879,0.0000229365,0.00004782304,0.0002113068,0.000050370993,0.79712796,0.00009773917,0.0007219595,0.0002845435],"about_ca_topic_score_codex":0.001251195,"about_ca_topic_score_gemma":0.00016170823,"teacher_disagreement_score":0.18682334,"about_ca_system_score_codex":0.000105535095,"about_ca_system_score_gemma":0.00012964371,"threshold_uncertainty_score":0.9999126},"labels":[],"label_agreement":null},{"id":"W2319994857","doi":"10.1038/sj.gt.3301482","title":"Identification of methylated CpG motifs as inhibitors of the immune stimulatory CpG motifs","year":2001,"lang":"en","type":"article","venue":"Gene Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":68,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Cancer Institute; National Institutes of Health; U.S. Department of Veterans Affairs","keywords":"CpG site; Biology; DNA methylation; DNA; Immune system; Molecular biology; Plasmid; Methylated DNA immunoprecipitation; Gene; Biochemistry; Gene expression; Immunology","score_opus":0.00990124411316648,"score_gpt":0.24110257281769265,"score_spread":0.23120132870452617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2319994857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9860847,0.012214989,0.0002204281,0.0002483181,0.00070212473,0.0003358055,0.0000068559634,0.000033648153,0.00015313599],"genre_scores_gemma":[0.99617004,0.0011333298,0.000006668563,0.00004100603,0.00002448161,0.000023292545,0.000037603684,0.000018450619,0.0025451165],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984689,0.0004139499,0.0006763406,0.00017402804,0.000071044444,0.00019574368],"domain_scores_gemma":[0.99864286,0.00008299483,0.00046961507,0.00059011125,0.00020545282,0.000008940974],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00059513026,0.00014933235,0.00027122675,0.00013240289,0.00014293999,0.000006407755,0.00031973084,0.0002216981,0.00049794384],"category_scores_gemma":[0.0000799795,0.00010996192,0.00017952766,0.00030971091,0.0002169166,0.00010302305,0.000047424386,0.00016129145,0.00013095229],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005366648,0.00010394646,0.00055746554,0.000006263522,0.00020893004,4.235976e-7,0.0006959188,0.00021744371,0.984197,0.0003572599,0.00012980548,0.0129888505],"study_design_scores_gemma":[0.0011670744,0.00013764216,0.030921271,0.000019523502,0.000023863005,0.000013916173,0.00010485757,0.00002932341,0.962352,0.00052332913,0.004608256,0.00009898983],"about_ca_topic_score_codex":0.00016337103,"about_ca_topic_score_gemma":0.000002064718,"teacher_disagreement_score":0.030363806,"about_ca_system_score_codex":0.000026661788,"about_ca_system_score_gemma":0.00011631457,"threshold_uncertainty_score":0.5452136},"labels":[],"label_agreement":null},{"id":"W2320448647","doi":"10.1097/qad.0000000000000381","title":"Soluble Toll-like receptor 2 is significantly elevated in HIV-1 infected breast milk and inhibits HIV-1 induced cellular activation, inflammation and infection","year":2014,"lang":"en","type":"article","venue":"AIDS","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; National Institutes of Health; Ministerio de Economía y Competitividad","keywords":"TLR2; Proinflammatory cytokine; Breast milk; Gp41; Immunology; Chemokine; Inflammation; Receptor; Biology; Toll-like receptor; Innate immune system; Medicine; Immune system; Internal medicine; TLR4; Antigen","score_opus":0.007479409605612583,"score_gpt":0.2036631250640648,"score_spread":0.19618371545845223,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2320448647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997754,0.00007470557,0.0007719357,0.00047760972,0.00026872073,0.00034521474,0.000005771784,0.00009328293,0.000208809],"genre_scores_gemma":[0.9986029,0.00007068366,0.000048679096,0.00009679501,0.000063416046,0.000032325235,0.00039269504,0.000020786929,0.0006717153],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984973,0.00041341793,0.0004351823,0.00031900257,0.000050836275,0.00028426907],"domain_scores_gemma":[0.9992826,0.00014078937,0.00018959463,0.00020388894,0.00015618355,0.00002694394],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048824554,0.00021180249,0.00026664283,0.00039764348,0.00020700984,0.000044869932,0.000057821973,0.0004024008,0.0001851549],"category_scores_gemma":[0.00016655946,0.00021263794,0.00003108264,0.0003808699,0.000105082996,0.0005160842,0.000061563194,0.0002989039,0.0002736779],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027742994,0.000034924968,0.020896014,0.000027513668,0.0000437076,2.1316663e-7,0.0009804489,0.0000025340769,0.9621222,0.00033678906,0.00057458214,0.014703616],"study_design_scores_gemma":[0.00203124,0.00026866066,0.07146523,0.000083679006,0.000022648714,0.000018902563,0.00007615637,0.00014110544,0.91595215,0.00010280919,0.00959786,0.00023955476],"about_ca_topic_score_codex":0.00025852484,"about_ca_topic_score_gemma":0.000027802611,"teacher_disagreement_score":0.050569214,"about_ca_system_score_codex":0.000056323588,"about_ca_system_score_gemma":0.000050716935,"threshold_uncertainty_score":0.86711234},"labels":[],"label_agreement":null},{"id":"W2320576932","doi":"10.1016/j.cjca.2011.07.216","title":"288 IL-10 induced cardiomyocyte survival is mediated by CD14 and MyD88 activation","year":2011,"lang":"en","type":"article","venue":"Canadian Journal of Cardiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"Research Manitoba","funders":"","keywords":"TLR4; Apoptosis; Cell biology; Signal transduction; Medicine; Phosphorylation; Stimulation; Tumor necrosis factor alpha; Poly ADP ribose polymerase; Programmed cell death; Immunology; Internal medicine; Biology; Biochemistry; Enzyme; Polymerase","score_opus":0.02240895163792464,"score_gpt":0.2085454250634144,"score_spread":0.18613647342548975,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2320576932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98139805,0.0018358944,0.00034792567,0.0005613333,0.0013635074,0.00011628508,0.000045070836,0.000010480262,0.014321478],"genre_scores_gemma":[0.9990259,0.00014368247,0.000015142746,0.00016154804,0.00014435335,0.000002935693,0.000050151302,0.00001246482,0.0004438218],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985323,0.00051178527,0.00041167974,0.00014763848,0.000035573798,0.00036103776],"domain_scores_gemma":[0.9990601,0.00013007893,0.00025635064,0.00017235504,0.00025941356,0.00012169049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062867824,0.00015704661,0.00048913027,0.00033787967,0.00014800759,0.000011682375,0.00018181493,0.00042481493,0.00027846874],"category_scores_gemma":[0.00031133674,0.0001434296,0.0001300428,0.000119816206,0.00020093101,0.0001811098,0.000012668802,0.00032852768,0.000074645395],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007884786,0.0000045898437,0.007524494,0.000013240285,0.0014574993,0.00006636504,0.0024278427,0.0000029005225,0.8692816,0.00034637775,0.098683275,0.01940332],"study_design_scores_gemma":[0.0020696889,0.0006466827,0.07676397,0.000032144933,0.00013990221,0.0007619849,0.0006077677,0.0000012650808,0.18503632,0.00021876075,0.7334083,0.00031322805],"about_ca_topic_score_codex":0.0014058077,"about_ca_topic_score_gemma":0.00018901189,"teacher_disagreement_score":0.6842453,"about_ca_system_score_codex":0.00009175731,"about_ca_system_score_gemma":0.00058864703,"threshold_uncertainty_score":0.58488894},"labels":[],"label_agreement":null},{"id":"W2320886549","doi":"10.1016/j.vetimm.2016.04.002","title":"Characterization of host responses induced by Toll-like receptor ligands in chicken cecal tonsil cells","year":2016,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Poultry Industry Council; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Poultry Research Council","keywords":"Biology; TLR2; Innate immune system; TLR4; Toll-like receptor; TLR5; Immune system; Lipopolysaccharide; CpG Oligodeoxynucleotide; TLR9; Immunology; Cathelicidin; Context (archaeology); Microbiology; Pattern recognition receptor; Receptor; Pathogen-associated molecular pattern; Beta defensin; Cytokine; Gene expression; Gene","score_opus":0.011905736263087883,"score_gpt":0.23109074362068474,"score_spread":0.21918500735759686,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2320886549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993781,0.0031911551,0.000056306835,0.0008159791,0.0015471604,0.00034982862,0.00010498654,0.00006995055,0.00008363265],"genre_scores_gemma":[0.99451214,0.003177533,0.000027681343,0.00012725312,0.000016697802,0.000078053105,0.00018322906,0.000034398156,0.0018430136],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968504,0.0010936019,0.00089214265,0.00052084896,0.000043519314,0.00059948635],"domain_scores_gemma":[0.9985662,0.00040254978,0.0003750211,0.0005459567,0.00008881329,0.000021450094],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006751117,0.00036599228,0.00070455694,0.000508568,0.00018010102,0.000010413884,0.0003440169,0.0008964326,0.00035643723],"category_scores_gemma":[0.00015240292,0.0002955817,0.0000919773,0.00023053432,0.00079117646,0.00038550323,0.0002844872,0.0003996443,0.00024355379],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006458671,0.00019684607,0.0010799292,0.000019303365,0.00010238491,0.000027314352,0.0007902498,1.3742686e-8,0.9795582,0.00013807179,0.000078138335,0.011550843],"study_design_scores_gemma":[0.0029590018,0.0031922085,0.08433855,0.00010579012,0.00002023469,0.00067539763,0.00016462768,2.8471402e-7,0.8917893,0.000024729785,0.016411787,0.0003180592],"about_ca_topic_score_codex":0.000040115196,"about_ca_topic_score_gemma":0.0000023654743,"teacher_disagreement_score":0.08776891,"about_ca_system_score_codex":0.00006238544,"about_ca_system_score_gemma":0.00009934494,"threshold_uncertainty_score":0.99994963},"labels":[],"label_agreement":null},{"id":"W2321317091","doi":"10.18632/oncotarget.8326","title":"XB130 deficiency enhances lipopolysaccharide-induced septic response and acute lung injury","year":2016,"lang":"en","type":"article","venue":"Oncotarget","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network","funders":"","keywords":"Medicine; Inflammatory response; Tumor necrosis factor alpha; Lipopolysaccharide; Apoptosis; Monocyte; Internal medicine; Immunology; Inflammation; Biology","score_opus":0.007103714149166277,"score_gpt":0.25752892572344727,"score_spread":0.250425211574281,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2321317091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951191,0.0017259513,0.00019378893,0.0015338094,0.0006439742,0.00017773607,0.000015146756,0.00009768188,0.0004928317],"genre_scores_gemma":[0.99273026,0.00033595125,0.00006716391,0.00015877446,0.000032718606,0.000026467385,0.000009342866,0.000017317609,0.006622021],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99856955,0.00038340292,0.00030894292,0.0003054734,0.000046860765,0.0003857789],"domain_scores_gemma":[0.99916357,0.00032051615,0.00012826103,0.00030201577,0.000057413778,0.000028228504],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006216151,0.00018614416,0.00024026498,0.00015908119,0.00022442093,0.000020656516,0.0001758913,0.00022675091,0.00071648846],"category_scores_gemma":[0.00024336776,0.00012562664,0.000067697336,0.00009366519,0.00014053161,0.00030302737,0.00009154429,0.00014319213,0.001161908],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019632557,0.00003229919,0.0013230977,0.0000065154213,0.000071413604,0.0000064587944,0.0003992636,2.4794687e-8,0.98779213,0.00040620682,0.0021702377,0.005829068],"study_design_scores_gemma":[0.0008250102,0.0004726374,0.012122875,0.000058819653,0.000051985866,0.00005715547,0.00008680216,0.0000019613467,0.96873903,0.00017974562,0.017175114,0.0002288556],"about_ca_topic_score_codex":0.000021009091,"about_ca_topic_score_gemma":0.0000034496522,"teacher_disagreement_score":0.019053122,"about_ca_system_score_codex":0.00006226154,"about_ca_system_score_gemma":0.00011643067,"threshold_uncertainty_score":0.9996158},"labels":[],"label_agreement":null},{"id":"W2323017874","doi":"10.1055/s-0028-1089350","title":"Expression funktioneller TLR und NOD Proteine in humanen mesenterialen Präadipozyten","year":2008,"lang":"de","type":"article","venue":"Zeitschrift für Gastroenterologie","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"NOD2; NOD1; Molecular biology; Medicine; Biology; Receptor; Innate immune system; Genetics","score_opus":0.02450588623125845,"score_gpt":0.2759020481654188,"score_spread":0.25139616193416037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323017874","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96603423,0.024832867,0.00039719345,0.0025769628,0.0032686521,0.0017071525,0.0000675211,0.00020580746,0.00090962154],"genre_scores_gemma":[0.9912639,0.0035638309,0.00023890473,0.000505609,0.00045617172,0.00022723817,0.0007760609,0.00008208124,0.0028861684],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.994098,0.001657812,0.0014446814,0.0010074851,0.00019740837,0.0015946164],"domain_scores_gemma":[0.9979968,0.00014821441,0.0005930281,0.0010110456,0.00016956401,0.00008133891],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007064641,0.0007584744,0.0010306935,0.0006253762,0.00054211996,0.00005023966,0.000800893,0.0009603817,0.0019304182],"category_scores_gemma":[0.00031038251,0.00069644075,0.0003288328,0.00025568908,0.0006654967,0.00053110847,0.0006021298,0.0011719888,0.0040534018],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012404485,0.0013088201,0.050527163,0.00016979182,0.00082698197,0.00053556607,0.0018633652,0.0000916278,0.90413463,0.0001042596,0.02667778,0.0013555295],"study_design_scores_gemma":[0.016810317,0.004456602,0.16013603,0.0010294934,0.0003547431,0.00042650197,0.00051616953,0.00006589665,0.37176785,0.000033969358,0.4433617,0.0010407467],"about_ca_topic_score_codex":0.00022183794,"about_ca_topic_score_gemma":0.000058204947,"teacher_disagreement_score":0.53236675,"about_ca_system_score_codex":0.000067379464,"about_ca_system_score_gemma":0.00017637339,"threshold_uncertainty_score":0.9995487},"labels":[],"label_agreement":null},{"id":"W2323594393","doi":"10.1177/1753425916632304","title":"Enhancing actions of peptides derived from the γ-chain of fetal human hemoglobin on the immunostimulant activities of monophosphoryl lipid A","year":2016,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Chemistry; Hemoglobin; Peptide; Activator (genetics); Lipid A; Biochemistry; Biophysics; Biology; Immunology; Receptor; Lipopolysaccharide","score_opus":0.02072427003694455,"score_gpt":0.24640050271421826,"score_spread":0.2256762326772737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2323594393","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99784064,0.0006782598,0.00010283589,0.00045346466,0.0002347775,0.00025241508,0.00009068025,0.000020188634,0.00032672906],"genre_scores_gemma":[0.9993804,0.0001911538,0.000013587883,0.00003440485,0.000013528785,0.000019735124,0.000029356472,0.000012906971,0.00030491225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824834,0.0008278052,0.0005433709,0.00011913201,0.0000631413,0.00019823256],"domain_scores_gemma":[0.9962521,0.002422055,0.0005158759,0.00069027964,0.00011315822,0.0000065006407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006764343,0.00016868106,0.0003405134,0.00007769496,0.00034355663,0.0000062139948,0.00045091854,0.0001520106,0.0002810991],"category_scores_gemma":[0.00041873063,0.00008666562,0.00017052097,0.0001252796,0.00068754406,0.00011926781,0.00015969863,0.00030191694,0.00002686299],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000716582,0.00012179821,0.00033978565,0.000010454227,0.00030482563,2.4712998e-7,0.0028252995,0.0000050023164,0.9922882,0.0006912312,0.0000720692,0.0026245613],"study_design_scores_gemma":[0.0007071662,0.0002555032,0.035837777,0.00029800663,0.000040634033,0.0000032989583,0.0028515488,0.0000016447116,0.95923346,0.00025959764,0.00041578276,0.000095582094],"about_ca_topic_score_codex":0.0027834238,"about_ca_topic_score_gemma":0.000106864514,"teacher_disagreement_score":0.035497993,"about_ca_system_score_codex":0.00003547298,"about_ca_system_score_gemma":0.000077535144,"threshold_uncertainty_score":0.42077225},"labels":[],"label_agreement":null},{"id":"W2324019217","doi":"10.1158/1538-7445.am10-5279","title":"Abstract 5279: LPS-TLR4 binding increases metastatic potential of colorectal cancer cells","year":2010,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Fibronectin; Medicine; Colorectal cancer; TLR4; Cancer cell; Receptor; Cancer research; Lipopolysaccharide; Cancer; Flow cytometry; Extracellular matrix; Pathology; Immunology; Internal medicine; Biology; Cell biology","score_opus":0.033355040908143556,"score_gpt":0.36010976596776656,"score_spread":0.326754725059623,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2324019217","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961694,0.0018383354,0.0000055220175,0.00017934405,0.00091099855,0.00032131354,0.000107231885,0.000024535197,0.00044334235],"genre_scores_gemma":[0.997691,0.0007058319,0.00003151304,0.000011067066,0.000072591676,0.00014866692,0.000065331675,0.000020260213,0.0012537445],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984874,0.00029252825,0.00031735975,0.00024679027,0.00013919604,0.00051673735],"domain_scores_gemma":[0.99895453,0.0003405611,0.000121300305,0.00023420357,0.0003134726,0.000035925077],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010969442,0.00012881553,0.0002545612,0.00032821554,0.0002595316,0.000026600504,0.00032418582,0.00017192193,0.007726995],"category_scores_gemma":[0.0001871272,0.00011207281,0.00008862302,0.00029789278,0.00048027778,0.00017007822,0.00011949089,0.00082201953,0.00043695894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007174582,0.00008779504,0.00041208856,0.0000662367,0.00016456432,0.000009745148,0.00017719316,0.000018723775,0.9890968,0.000115519535,0.0029237564,0.006210108],"study_design_scores_gemma":[0.00075427664,0.00009156514,0.009754364,0.000059612437,0.000028206692,0.000011201268,0.00022074448,0.0000067218452,0.98181725,0.000037393023,0.0071028206,0.00011585327],"about_ca_topic_score_codex":0.006708756,"about_ca_topic_score_gemma":0.0006493628,"teacher_disagreement_score":0.0093422765,"about_ca_system_score_codex":0.0000744468,"about_ca_system_score_gemma":0.0005875101,"threshold_uncertainty_score":0.99990565},"labels":[],"label_agreement":null},{"id":"W2325876195","doi":"10.3899/jrheum.110378","title":"Soluble CD14 and CD14 Polymorphisms in Rheumatoid Arthritis","year":2011,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Iowa City Veterans Affairs Medical Center; U.S. Department of Veterans Affairs","keywords":"Medicine; Rheumatoid arthritis; CD14; Internal medicine; Body mass index; SNP; Single-nucleotide polymorphism; Immunology; Disease; Logistic regression; Arthritis; Immune system; Genotype; Gene; Biology; Genetics","score_opus":0.012859939477212435,"score_gpt":0.20685181665895847,"score_spread":0.19399187718174604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2325876195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9756545,0.022274548,0.00012265665,0.0005247026,0.000790346,0.00008033017,5.759757e-7,0.000010699746,0.00054165727],"genre_scores_gemma":[0.9803393,0.019335818,0.00007159715,0.00006344102,0.0000023840346,0.0000021189005,0.0000016383088,0.0000107851465,0.00017289982],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983635,0.0005529726,0.0006781779,0.00008313855,0.000033572298,0.00028863887],"domain_scores_gemma":[0.99902666,0.0002690217,0.00043335784,0.00018139849,0.00007031613,0.000019226018],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010981564,0.00012918956,0.000417559,0.0002337479,0.00011703322,0.0000060480593,0.00026042492,0.00019425382,0.00047430454],"category_scores_gemma":[0.00015907554,0.000088723486,0.00006132405,0.00010290948,0.00032162492,0.00017367073,0.00007380051,0.00040602736,0.00014276721],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009317637,0.0005669828,0.4866449,0.000054458862,0.0009893831,0.00010092553,0.040319193,0.000009476669,0.3452075,0.029738486,0.013743085,0.07330797],"study_design_scores_gemma":[0.023817748,0.0037240859,0.27873316,0.0018131586,0.0001362335,0.21119887,0.00783848,0.000048031736,0.38594505,0.022161093,0.063241675,0.0013424024],"about_ca_topic_score_codex":0.00060582336,"about_ca_topic_score_gemma":0.00015695831,"teacher_disagreement_score":0.21109794,"about_ca_system_score_codex":0.000017926315,"about_ca_system_score_gemma":0.00007943048,"threshold_uncertainty_score":0.5193302},"labels":[],"label_agreement":null},{"id":"W2326217713","doi":"10.1097/ccm.0000000000000270","title":"Could Altered Leukocyte Gene Expression Profile in Trauma Patients Guide Immune Interventions to Prevent Gram-Negative Bacteremia?*","year":2014,"lang":"en","type":"letter","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"St. Paul's Hospital","funders":"","keywords":"Medicine; Sirius; Genomics; Intensive care medicine; Family medicine; Genetics; Gene; Genome; Biology","score_opus":0.02728802010831433,"score_gpt":0.32445123878131527,"score_spread":0.29716321867300094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2326217713","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.29210907,0.018790198,0.0038806596,0.6519187,0.015587988,0.007932158,0.00058027037,0.00045031938,0.008750625],"genre_scores_gemma":[0.7959563,0.00012341407,0.0008687354,0.16001518,0.0030857513,0.0014613341,0.025813947,0.00024194014,0.012433387],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99564314,0.0012036006,0.0014829974,0.0007090689,0.00020197798,0.0007592095],"domain_scores_gemma":[0.9975776,0.00079103076,0.00022799247,0.00072608725,0.0006128265,0.00006446685],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00047786624,0.00053974695,0.0010692098,0.0005147057,0.00017586339,0.000021254384,0.00050841435,0.0012829554,0.0019256036],"category_scores_gemma":[0.002618037,0.0004376633,0.0003079708,0.00020439728,0.00043840532,0.0001205455,0.00021536028,0.0021119514,0.00058641826],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045954704,0.0002092465,0.00009060405,0.0017680728,0.00007831513,0.00007254608,0.0024568574,8.0406244e-7,0.11363053,0.000030459194,0.8728062,0.008396849],"study_design_scores_gemma":[0.0039491137,0.0024408244,0.002588172,0.008492014,0.00028442236,0.000041997122,0.0008444428,0.0000014019613,0.47931346,0.00012338012,0.50119877,0.0007219897],"about_ca_topic_score_codex":0.00019705272,"about_ca_topic_score_gemma":0.000024750778,"teacher_disagreement_score":0.50384724,"about_ca_system_score_codex":0.00040737816,"about_ca_system_score_gemma":0.000089376415,"threshold_uncertainty_score":0.99980754},"labels":[],"label_agreement":null},{"id":"W2327033564","doi":"10.1097/00007890-200308271-00040","title":"COMBINATION OF RAPAMYCIN AND ANTI-LFA-1 PREVENTS REJECTION OF RAT ISLET XENOGRAFTS.","year":2003,"lang":"en","type":"article","venue":"Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Islet; Sirolimus; Medicine; Cancer research; Pharmacology; Internal medicine; Insulin","score_opus":0.007908454682439297,"score_gpt":0.22394133619737763,"score_spread":0.21603288151493832,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327033564","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99635595,0.00052740955,0.0019815806,0.000021158548,0.00032423454,0.00019826405,0.000006451308,0.000014641538,0.0005702941],"genre_scores_gemma":[0.998615,0.0008792285,0.00007504743,0.0000065434124,0.00000294031,0.0000059192485,0.00016052257,0.0000054695174,0.00024928403],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992511,0.0002518952,0.0002828908,0.00009687858,0.00003205511,0.000085137566],"domain_scores_gemma":[0.99964315,0.00006273095,0.00015421142,0.00007901794,0.00005588867,0.000004978902],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027213033,0.00007294195,0.00014829708,0.00013434615,0.00005042851,0.000002593814,0.000031273194,0.00011137175,0.000069776695],"category_scores_gemma":[0.000019653697,0.000071497925,0.000033516997,0.000111427034,0.00006476688,0.00014822863,0.0000018460242,0.00006110656,0.0000086316595],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030709401,0.00007351428,0.0028185176,0.00014762356,0.000041155974,3.9780235e-7,0.0010515517,0.000011050853,0.99127066,0.0025378836,0.000044623106,0.0016959304],"study_design_scores_gemma":[0.001960237,0.00016422976,0.03658871,0.00006692122,0.00006626298,0.000034844,0.00009939534,0.000005090731,0.9601346,0.00017262908,0.00064147764,0.00006558437],"about_ca_topic_score_codex":0.000022889672,"about_ca_topic_score_gemma":0.0000033390677,"teacher_disagreement_score":0.033770192,"about_ca_system_score_codex":0.0000075222647,"about_ca_system_score_gemma":0.000018918536,"threshold_uncertainty_score":0.29156008},"labels":[],"label_agreement":null},{"id":"W2327125795","doi":"10.3748/wjg.v20.i48.18390","title":"Increased expression of tumor necrosis factor-α is associated with advanced colorectal cancer stages","year":2014,"lang":"en","type":"article","venue":"World Journal of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":155,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital","funders":"","keywords":"Colorectal cancer; Tumor necrosis factor alpha; Immunohistochemistry; Tissue microarray; Medicine; Reverse transcription polymerase chain reaction; Cancer; Pathology; Gene expression; Cancer research; Oncology; Internal medicine; Biology; Gene","score_opus":0.005895687619245405,"score_gpt":0.22499953874366613,"score_spread":0.2191038511244207,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327125795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99869114,0.00027052945,0.00021302399,0.00033225075,0.00031521465,0.00009497009,0.000024160587,0.000011305422,0.000047404224],"genre_scores_gemma":[0.99927634,0.000054495704,0.00011268092,0.00028831424,0.00002489729,0.0000064380497,0.000013686776,0.00001517262,0.00020798398],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99829274,0.0006119375,0.000577963,0.00013129739,0.00007135836,0.00031472437],"domain_scores_gemma":[0.998216,0.00021036682,0.0011418944,0.0001220741,0.00027800343,0.000031698564],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034643142,0.00016650441,0.00057287305,0.0002962648,0.00007506085,0.000006433245,0.00020992981,0.00008217905,0.0005778652],"category_scores_gemma":[0.00014680527,0.00012173424,0.00012413313,0.00011336074,0.0001932396,0.00015775868,0.000042347277,0.00033052993,0.000006060389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009871106,0.00011492284,0.16614255,0.000009045421,0.00021775559,0.000005607889,0.00024629195,0.000025719175,0.8217427,0.0000066614857,0.00086909276,0.00074851955],"study_design_scores_gemma":[0.0047417507,0.003438108,0.28615797,0.00025599345,0.000072778326,0.00009326871,0.000050552408,0.000004754776,0.7036921,0.000014267877,0.0014021426,0.000076314835],"about_ca_topic_score_codex":0.000030021023,"about_ca_topic_score_gemma":0.00016126502,"teacher_disagreement_score":0.12001543,"about_ca_system_score_codex":0.000061367755,"about_ca_system_score_gemma":0.00006155707,"threshold_uncertainty_score":0.6327219},"labels":[],"label_agreement":null},{"id":"W2327333444","doi":"10.1038/sj.gene.6363732","title":"LPS-hyporesponsiveness of mnd mice is associated with a mutation in Toll-like receptor 4","year":2001,"lang":"en","type":"article","venue":"Genes and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal General Hospital; McGill University","funders":"","keywords":"Biology; TLR4; Frameshift mutation; Mutation; Lipopolysaccharide; Transmembrane protein; Toll-like receptor; Innate immune system; Receptor; Immune system; Cell biology; Exon; TLR2; Signal transduction; Transmembrane domain; Genetics; Bacterial outer membrane; Immunology; Gene","score_opus":0.011428055866753332,"score_gpt":0.22604840610692636,"score_spread":0.21462035024017304,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2327333444","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99557704,0.0037582724,0.000051826377,0.00013904173,0.00011983079,0.00016493684,0.000012795374,0.000016087906,0.0001601612],"genre_scores_gemma":[0.99749535,0.00089820294,0.000029479115,0.000073121984,0.0000047944045,0.000012405138,0.0001677965,0.000009057782,0.0013098004],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989642,0.00042509596,0.00026539603,0.00012813823,0.0000314528,0.00018574254],"domain_scores_gemma":[0.99936265,0.0001796667,0.00015694513,0.00016954832,0.000121558805,0.000009660649],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040847113,0.00011841945,0.00023919134,0.00014279483,0.00012541737,0.000008009412,0.00009236036,0.00016831743,0.00020715629],"category_scores_gemma":[0.00008756762,0.00010117874,0.000033129545,0.00023659604,0.00012439248,0.00013495302,0.000040685663,0.00014615123,0.000023962722],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002251309,0.00013107902,0.010888772,0.00001688908,0.00012402846,0.000007820831,0.0023004473,0.000009932367,0.9690965,0.000053767664,0.00014311845,0.014976338],"study_design_scores_gemma":[0.0035618874,0.0006478091,0.32431906,0.00018517005,0.000053611104,0.00014980219,0.0027288713,0.000030257204,0.6480245,0.00008373486,0.019926878,0.00028843706],"about_ca_topic_score_codex":0.00056257984,"about_ca_topic_score_gemma":0.00010981456,"teacher_disagreement_score":0.321072,"about_ca_system_score_codex":0.000028800288,"about_ca_system_score_gemma":0.00006665065,"threshold_uncertainty_score":0.41259494},"labels":[],"label_agreement":null},{"id":"W2329233355","doi":"10.1016/j.jneuroim.2016.03.019","title":"TLR4 induces CCR7-dependent monocytes transmigration through the blood–brain barrier","year":2016,"lang":"en","type":"article","venue":"Journal of Neuroimmunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"CCL19; Monocyte; TLR4; Biology; Chemotaxis; Peptidoglycan; Toll-like receptor; Cell biology; Lipoteichoic acid; C-C chemokine receptor type 7; Receptor; Microbiology; Innate immune system; Immunology; Chemokine; Bacteria; Chemokine receptor; Immune system; Signal transduction; Staphylococcus aureus; Biochemistry; Genetics","score_opus":0.01680727230091822,"score_gpt":0.24359655922148535,"score_spread":0.22678928692056713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2329233355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9724825,0.0061015124,0.00072255137,0.018785696,0.001419002,0.00014808937,0.000004143625,0.000024792354,0.00031171023],"genre_scores_gemma":[0.99442226,0.0016996386,0.000029447967,0.0006134032,0.00009350218,0.000007109472,0.0000030028152,0.000018977304,0.0031126873],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977058,0.0009636198,0.0007592843,0.00016907307,0.00007484365,0.00032735174],"domain_scores_gemma":[0.9979348,0.0009411214,0.00059765065,0.00032682338,0.00018674451,0.000012822316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056042906,0.00019390072,0.0003446645,0.00016059376,0.00023875733,0.000023272103,0.0005022577,0.00028062356,0.000457002],"category_scores_gemma":[0.00051885605,0.00009853115,0.00020732671,0.00011999654,0.0003397275,0.000501975,0.00005454704,0.00050300156,0.00020546805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006885148,0.00007989503,0.00010839659,0.0000031894917,0.0003238291,0.000027760798,0.0011991471,0.000003761928,0.9804441,0.0013772966,0.0015209621,0.014223202],"study_design_scores_gemma":[0.0033409605,0.0013422881,0.023456324,0.00006213906,0.00014834559,0.002886203,0.00045941348,4.4561216e-7,0.8131948,0.0015311678,0.15339445,0.0001834408],"about_ca_topic_score_codex":0.000020615857,"about_ca_topic_score_gemma":0.000006087976,"teacher_disagreement_score":0.16724922,"about_ca_system_score_codex":0.000032944004,"about_ca_system_score_gemma":0.00012911568,"threshold_uncertainty_score":0.50038517},"labels":[],"label_agreement":null},{"id":"W2330566068","doi":"10.1097/ta.0b013e3182789489","title":"Lipopolysaccharide and hemorrhagic shock cause systemic inflammation by different mechanisms","year":2012,"lang":"en","type":"article","venue":"The Journal of Trauma: Injury, Infection, and Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Sept Iles","funders":"","keywords":"Systemic inflammation; Inflammation; Lipopolysaccharide; Shock (circulatory); Hemorrhagic shock; Medicine; Immunology; Internal medicine","score_opus":0.009957683858349367,"score_gpt":0.2581617700898263,"score_spread":0.24820408623147697,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2330566068","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852527,0.0111746965,0.0019956988,0.00040057534,0.00096368033,0.00013067272,0.000009154185,0.000020661915,0.000052190175],"genre_scores_gemma":[0.9987825,0.00090212113,0.0000087481285,0.000058731966,0.00016162157,0.0000045713145,0.0000099935105,0.000012343605,0.00005932977],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866015,0.0004518544,0.00046587424,0.00008279746,0.00007638825,0.00026291443],"domain_scores_gemma":[0.99916637,0.00025908946,0.00015663807,0.00012588924,0.00023406433,0.000057974623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005712327,0.00016705184,0.0002625689,0.000109144494,0.00035932224,0.00003778423,0.000077600824,0.00018985599,0.00008001088],"category_scores_gemma":[0.00017613225,0.00010809056,0.00007020988,0.000050522518,0.0001604345,0.00038770898,0.00003557498,0.00036913203,0.000015530635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007081211,0.00008854211,0.0056258608,0.00028889903,0.00017437569,0.0000016138853,0.004850161,0.0000013016777,0.96308124,0.008123532,0.0011070162,0.01594934],"study_design_scores_gemma":[0.0013849746,0.0012330686,0.02185938,0.000206213,0.00082481606,0.003927539,0.005455235,0.000007903198,0.96134496,0.0014292616,0.001990143,0.0003364872],"about_ca_topic_score_codex":0.00005123736,"about_ca_topic_score_gemma":0.000007822269,"teacher_disagreement_score":0.016233519,"about_ca_system_score_codex":0.00006298733,"about_ca_system_score_gemma":0.000019936564,"threshold_uncertainty_score":0.4407805},"labels":[],"label_agreement":null},{"id":"W2331376230","doi":"10.1097/shk.0b013e3181eecb7c","title":"WHAT'S NEW IN SHOCK, OCTOBER 2010?","year":2010,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences Centre; Sunnybrook Health Science Centre","funders":"","keywords":"Shock (circulatory); Medicine; Internal medicine","score_opus":0.00943794962697191,"score_gpt":0.2394380942981235,"score_spread":0.23000014467115157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2331376230","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9870976,0.002096204,0.00005270791,0.0019558568,0.0052253674,0.00015496291,8.371315e-7,0.000054187196,0.0033622526],"genre_scores_gemma":[0.91889715,0.00026422463,0.00013704898,0.00037370936,0.00015167691,0.000007158305,0.00006928701,0.000017647037,0.080082126],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99926126,0.00006985106,0.00021420716,0.00016664976,0.00002170734,0.0002663114],"domain_scores_gemma":[0.99955547,0.00006550596,0.000046681314,0.0002911322,0.000024348981,0.000016891136],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019533199,0.00010994545,0.00014625861,0.00011657179,0.000056445046,0.000034914377,0.00016456092,0.00028925252,0.0033203172],"category_scores_gemma":[0.00007943584,0.00009865165,0.00005280652,0.00010572696,0.000054100867,0.0004020744,0.00004978915,0.000459079,0.004119223],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014551546,0.00003045006,0.0009306322,0.000003609317,0.000021958738,0.000004782625,0.0005822165,0.0000016560601,0.9128804,0.0010907721,0.027592424,0.056715567],"study_design_scores_gemma":[0.0012109246,0.00006300423,0.02832265,0.000029314058,0.000010040132,0.000054543056,0.00027331244,0.0000070517385,0.3440216,0.0009216105,0.62488467,0.0002013191],"about_ca_topic_score_codex":0.0002704132,"about_ca_topic_score_gemma":0.0006444023,"teacher_disagreement_score":0.59729224,"about_ca_system_score_codex":0.000015307012,"about_ca_system_score_gemma":0.000099259145,"threshold_uncertainty_score":0.9975908},"labels":[],"label_agreement":null},{"id":"W2331816454","doi":"10.1097/cji.0b013e31828eed62","title":"Identification of Synthetic Peptides that Inhibit Lipopolysaccharide (LPS) Binding to Myeloid Differentiation Protein-2 (MD-2)","year":2013,"lang":"en","type":"article","venue":"Journal of Immunotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Lipopolysaccharide; TLR4; Peptide; Peptide library; Tumor necrosis factor alpha; Phage display; Chemistry; Peptide sequence; Receptor; Molecular biology; Biology; Biochemistry; Immunology; Gene","score_opus":0.009315536270661534,"score_gpt":0.22712660890450412,"score_spread":0.21781107263384258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2331816454","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99362147,0.0020613347,0.0026093596,0.0006517944,0.00050870044,0.00049204077,0.0000025707268,0.000016737771,0.000036004498],"genre_scores_gemma":[0.99776506,0.00066061254,0.000141491,0.000051000672,0.000041671476,0.00003015499,0.000006932889,0.000024027677,0.001279038],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99825346,0.00026491212,0.0010028068,0.00013293003,0.00011909107,0.0002268043],"domain_scores_gemma":[0.99801004,0.00012604542,0.0012215801,0.0002778367,0.00034314508,0.0000213706],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070827664,0.00016946843,0.00036131064,0.00050561747,0.00012682738,0.000059264275,0.00029887588,0.00015963204,0.00060076086],"category_scores_gemma":[0.00016588153,0.00013677342,0.00019974099,0.00014899565,0.000067660265,0.0005467741,0.00002796956,0.0002335276,0.00040023462],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003944273,0.000097659766,0.0004134194,0.000022412722,0.00021090862,5.4467444e-7,0.0010991322,0.000011693374,0.9732476,0.00014098157,0.00038835022,0.023972886],"study_design_scores_gemma":[0.0009012744,0.00032742263,0.008428491,0.00031536963,0.000026380168,0.000056870555,0.00045108108,0.0000045463257,0.9883243,0.00027113289,0.0007558705,0.0001372484],"about_ca_topic_score_codex":0.000051766987,"about_ca_topic_score_gemma":0.0000021372527,"teacher_disagreement_score":0.023835639,"about_ca_system_score_codex":0.00008260193,"about_ca_system_score_gemma":0.0000764218,"threshold_uncertainty_score":0.657791},"labels":[],"label_agreement":null},{"id":"W2333785992","doi":"10.3899/jrheum.100732","title":"Expression of Toll-like Receptors and Their Signaling Pathways in Rheumatoid Synovitis","year":2011,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":75,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Sigrid Juséliuksen Säätiö","keywords":"Dendritic cell; Toll-like receptor; Medicine; Myeloid; Receptor; Immunology; Molecular biology; Biology; Immune system; Innate immune system; Internal medicine","score_opus":0.01628747560585269,"score_gpt":0.2044280239834356,"score_spread":0.1881405483775829,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2333785992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99244833,0.006307658,0.0002881073,0.00006939171,0.00067002425,0.000080236896,0.0000010876465,0.00000699055,0.00012818398],"genre_scores_gemma":[0.9959148,0.0039310134,0.00009353137,0.000016557244,0.0000014760981,0.0000016076835,0.0000019128604,0.000009625791,0.00002944205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981985,0.00074051786,0.00075597665,0.00007603058,0.000029423054,0.00019956712],"domain_scores_gemma":[0.9985622,0.0005057405,0.00067109405,0.00016172847,0.00008490819,0.000014294167],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011672361,0.0001273877,0.0004605604,0.00022617588,0.00007917955,0.0000026478378,0.00024723852,0.00019376852,0.0002342072],"category_scores_gemma":[0.000145485,0.00007539129,0.000069655405,0.00009299576,0.00024726623,0.00013907737,0.00007218614,0.00032508536,0.000013829113],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001697127,0.000085190404,0.02670291,0.000036723093,0.00009870992,0.0000037752095,0.019194081,0.0000058964433,0.9457097,0.0006511338,0.0005496384,0.005265087],"study_design_scores_gemma":[0.0016994776,0.0004802723,0.0044939364,0.00058808737,0.00001697182,0.006192093,0.0063015097,0.0000053512413,0.9775241,0.0012910853,0.0012722772,0.00013482325],"about_ca_topic_score_codex":0.00014319115,"about_ca_topic_score_gemma":0.000016370228,"teacher_disagreement_score":0.03181439,"about_ca_system_score_codex":0.000014952544,"about_ca_system_score_gemma":0.00006533085,"threshold_uncertainty_score":0.30743676},"labels":[],"label_agreement":null},{"id":"W2334599302","doi":"10.1097/ta.0b013e3182ab0723","title":"Interleukin 1β attenuates vascular α1 adrenergic receptors expression following lipopolysaccharide-induced endotoxemia in rabbits","year":2014,"lang":"en","type":"article","venue":"The Journal of Trauma: Injury, Infection, and Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Sept Iles","funders":"","keywords":"Phenylephrine; Lipopolysaccharide; Receptor; Nitric oxide; Mesenteric arteries; STAT protein; Agonist; Vascular smooth muscle; Internal medicine; Endocrinology; Messenger RNA; Signal transduction; Chemistry; STAT3; Biology; Cell biology; Medicine; Biochemistry; Artery; Blood pressure","score_opus":0.009798771958574766,"score_gpt":0.26583660890870237,"score_spread":0.2560378369501276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2334599302","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99493146,0.002508793,0.00032304897,0.00024304846,0.0016992273,0.00010969777,9.3400195e-7,0.00002165019,0.00016214572],"genre_scores_gemma":[0.99939775,0.00028873445,0.00001691019,0.000082098166,0.00015504238,0.000005957591,0.000006621516,0.000016741784,0.00003014777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978561,0.0009945425,0.00061635394,0.0001478743,0.00009749885,0.00028765644],"domain_scores_gemma":[0.99891406,0.00048133716,0.00015189714,0.00018856305,0.00022226026,0.00004186353],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012049098,0.00019324882,0.0003645997,0.0002423044,0.0003092654,0.000037369166,0.00016874445,0.0002530392,0.000101975274],"category_scores_gemma":[0.0007278582,0.00013261574,0.00021695475,0.00012607743,0.00012384953,0.00032678634,0.000050539962,0.0006274435,0.00001994341],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064770406,0.00008025141,0.005476645,0.000071781855,0.00009936765,0.0000042676747,0.003513195,0.000016322925,0.97040224,0.0005915738,0.00040852884,0.018688114],"study_design_scores_gemma":[0.0015434157,0.0010618686,0.00945596,0.0003891736,0.00018623531,0.00016579482,0.0021500103,0.000006909931,0.9808953,0.0006179673,0.003312611,0.0002147487],"about_ca_topic_score_codex":0.00020059966,"about_ca_topic_score_gemma":0.00005484461,"teacher_disagreement_score":0.018473366,"about_ca_system_score_codex":0.00007705242,"about_ca_system_score_gemma":0.000044257245,"threshold_uncertainty_score":0.5407913},"labels":[],"label_agreement":null},{"id":"W2339474990","doi":"10.1080/21645515.2016.1168958","title":"Phosphate substitution in an AlOOH - TLR4 adjuvant system (SPA08) modulates the immunogenicity of Serovar E MOMP from <i>Chlamydia trachomatis</i>","year":2016,"lang":"en","type":"article","venue":"Human Vaccines & Immunotherapeutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Immunogenicity; Adjuvant; Chemistry; Microbiology; Chlamydia trachomatis; Phosphate; Splenocyte; Antigen; Biology; In vitro; Biochemistry; Virology; Immunology","score_opus":0.01702090506364479,"score_gpt":0.2458775999836089,"score_spread":0.2288566949199641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339474990","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98063886,0.01732863,0.0004377949,0.0001206014,0.00065736123,0.00055364094,0.000060110415,0.00013442319,0.00006857359],"genre_scores_gemma":[0.99868506,0.0005430564,0.00003575574,0.000081210484,0.000060961294,0.000048515554,0.00018111244,0.000051069634,0.00031327744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99721605,0.00067639624,0.0011187353,0.00039435131,0.000099832396,0.0004946391],"domain_scores_gemma":[0.99792016,0.0002864562,0.0005401481,0.0010534927,0.00018122472,0.000018513856],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00064767053,0.00039308539,0.0006137364,0.00017443564,0.00036298757,0.00004081422,0.0007081648,0.0003813736,0.0003322019],"category_scores_gemma":[0.000021984313,0.00024679076,0.00019171835,0.0002346543,0.00020213312,0.00050770264,0.0000817232,0.00028774954,0.00019089786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008814572,0.00017463816,0.0122170495,0.000029456178,0.00033130372,0.000003167904,0.001350342,0.000036849335,0.97169447,0.0028242313,0.00002456926,0.010432459],"study_design_scores_gemma":[0.003945736,0.00013702527,0.31668675,0.0002836084,0.00011702502,0.000023804367,0.00037879986,0.000069157024,0.6758154,0.0003818193,0.0018444952,0.00031635285],"about_ca_topic_score_codex":0.0010738347,"about_ca_topic_score_gemma":0.00026396147,"teacher_disagreement_score":0.3044697,"about_ca_system_score_codex":0.0001544983,"about_ca_system_score_gemma":0.00007257847,"threshold_uncertainty_score":0.99999845},"labels":[],"label_agreement":null},{"id":"W2339897553","doi":"10.1189/jlb.69.5.815","title":"Peroxynitrite mediates cytokine-induced IL-8 gene expression and production by human leukocytes","year":2001,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Medical Research Council Canada","keywords":"Pyrrolidine dithiocarbamate; Peroxynitrite; Nitric oxide; Biology; Cytokine; Superoxide; Molecular biology; Tumor necrosis factor alpha; Peripheral blood mononuclear cell; Nitric oxide synthase; Gene expression; Interleukin; Immunology; Inflammation; Biochemistry; NF-κB; In vitro; Endocrinology; Enzyme; Gene","score_opus":0.016908154295143515,"score_gpt":0.26310878453938513,"score_spread":0.2462006302442416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2339897553","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9889072,0.009062396,0.00009143393,0.000742769,0.00093423197,0.00012957376,0.000004570019,0.000027834076,0.000099999],"genre_scores_gemma":[0.9953039,0.0034922007,0.0001151519,0.00007575871,0.0003232957,0.0000055516753,0.00007587997,0.000017222088,0.0005909834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982323,0.0004628361,0.0007004137,0.00023274845,0.000048718393,0.00032300473],"domain_scores_gemma":[0.99878556,0.00013682818,0.00062683184,0.00018762582,0.0002232071,0.000039973467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070364936,0.00021266445,0.00044423592,0.00029295668,0.00026178715,0.000018253151,0.00019971553,0.0003911134,0.00013216499],"category_scores_gemma":[0.00028220096,0.00016121297,0.00010584627,0.00012095541,0.00018260133,0.0002944162,0.000067148336,0.00043697932,0.000049300204],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075821223,0.00007017717,0.0029204965,0.0000080908985,0.00010247072,0.000012321316,0.0002385742,9.788946e-7,0.9878148,0.00003580918,0.003135323,0.0049027842],"study_design_scores_gemma":[0.0016882409,0.0008569504,0.003965918,0.00004378069,0.000046104167,0.0014868666,0.00018347503,9.3705927e-7,0.9383788,0.000193699,0.052987188,0.00016804971],"about_ca_topic_score_codex":0.00003377809,"about_ca_topic_score_gemma":0.000004433353,"teacher_disagreement_score":0.049851865,"about_ca_system_score_codex":0.00007893169,"about_ca_system_score_gemma":0.00007607298,"threshold_uncertainty_score":0.6574074},"labels":[],"label_agreement":null},{"id":"W2342083333","doi":"10.1089/vim.2015.0144","title":"Characterization of Immune Responses to an Inactivated Avian Influenza Virus Vaccine Adjuvanted with Nanoparticles Containing CpG ODN","year":2016,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canadian Poultry Research Council","keywords":"Adjuvant; CpG Oligodeoxynucleotide; Immune system; Nasal administration; Virus; Antigen; PLGA; Antibody; Virology; Inactivated vaccine; Microbiology; Biology; Chemistry; Immunology; Biochemistry","score_opus":0.012560227154072741,"score_gpt":0.24803914938313246,"score_spread":0.23547892222905972,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342083333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9975195,0.00044804576,0.0005769794,0.00051629555,0.00026694156,0.00043175524,0.000042146006,0.00016049393,0.000037833404],"genre_scores_gemma":[0.9987977,0.000070129165,0.000055757424,0.00021033443,0.000017893732,0.00009001358,0.00012329407,0.000039629274,0.00059526187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99745536,0.00080967933,0.0007830384,0.0003724723,0.000053761556,0.00052566885],"domain_scores_gemma":[0.99847406,0.00020043734,0.00043155884,0.0005855858,0.00027744175,0.000030897445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041272872,0.00029080198,0.0005586371,0.0004550129,0.00018943507,0.0000151312515,0.0003260704,0.000324548,0.0004124395],"category_scores_gemma":[0.00026457757,0.00019941188,0.00006713501,0.00035169267,0.00021776832,0.00065211015,0.00012309014,0.00019039657,0.00037002424],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.029903593,0.00015232096,0.0029293108,0.0000068117115,0.00027659387,0.000008253541,0.0007997996,8.6713186e-7,0.9461319,0.00078436965,0.0000048659003,0.019001348],"study_design_scores_gemma":[0.0033983174,0.0033648459,0.20039026,0.00012625766,0.000035878697,0.00006451775,0.00020149014,0.0000011504569,0.7885189,0.000031020714,0.0036296467,0.00023770404],"about_ca_topic_score_codex":0.0002626579,"about_ca_topic_score_gemma":0.000037719044,"teacher_disagreement_score":0.19746096,"about_ca_system_score_codex":0.000084870546,"about_ca_system_score_gemma":0.00011629502,"threshold_uncertainty_score":0.813178},"labels":[],"label_agreement":null},{"id":"W2342389707","doi":"10.1016/j.tice.2016.04.002","title":"Effects of Toll-like receptor ligands on RAW 264.7 macrophage morphology and zymosan phagocytosis","year":2016,"lang":"en","type":"article","venue":"Tissue and Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; Douglas College","funders":"","keywords":"Zymosan; Phagocytosis; Scavenger receptor; Toll-like receptor; TLR2; Mannose receptor; TLR5; Receptor; Chemistry; Cell biology; Lipoteichoic acid; Microbiology; TLR4; Biology; Macrophage; Biochemistry; Innate immune system; In vitro; Bacteria","score_opus":0.003554094982423717,"score_gpt":0.20017163457184464,"score_spread":0.19661753958942094,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2342389707","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916442,0.0067888508,0.00004207653,0.0002856427,0.00032337848,0.00017938984,0.0000063181283,0.000023638828,0.00070650363],"genre_scores_gemma":[0.9855269,0.0020367142,0.00001941599,0.0001160643,0.000023028973,0.000013446157,0.00001306343,0.000012085504,0.012239268],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992534,0.0001192579,0.00019025725,0.00020665121,0.000022157581,0.00020830255],"domain_scores_gemma":[0.999421,0.00029068437,0.00008976224,0.00015588805,0.000021072743,0.000021600968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012891414,0.00013759064,0.00024966543,0.00007807714,0.00008221918,0.0000051594498,0.00007228015,0.00021842532,0.00038016145],"category_scores_gemma":[0.000027962278,0.000094607836,0.000029593495,0.00004552785,0.0001752973,0.00006123643,0.000049387774,0.00008534208,0.00037677708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00048562206,0.0000562446,0.000141379,0.00006229493,0.000034383233,0.0000092795035,0.00024283661,2.8612536e-8,0.9589713,0.00016706002,0.0027381945,0.03709134],"study_design_scores_gemma":[0.0020847535,0.0007771298,0.0017877378,0.000055147826,0.000034425695,0.000028493672,0.000028338774,1.6611376e-7,0.94403905,0.000035530993,0.05101486,0.00011437636],"about_ca_topic_score_codex":0.000021367152,"about_ca_topic_score_gemma":8.8014474e-7,"teacher_disagreement_score":0.048276663,"about_ca_system_score_codex":0.000008552421,"about_ca_system_score_gemma":0.0000126385485,"threshold_uncertainty_score":0.48428327},"labels":[],"label_agreement":null},{"id":"W2343573218","doi":"10.1016/j.vetimm.2016.04.011","title":"Longitudinal evaluation of leukocyte transcripts in killer whales (Orcinus Orca)","year":2016,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Curtin University of Technology; AGE-WELL","keywords":"Biology; Zoology; Whale; Evolutionary biology; Fishery","score_opus":0.04239609152991191,"score_gpt":0.2806635652586454,"score_spread":0.23826747372873347,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343573218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9632433,0.033927094,0.00014483997,0.00043181542,0.0012627915,0.00037442468,0.000008088249,0.000045891575,0.0005617571],"genre_scores_gemma":[0.99674034,0.0025638498,0.00004177185,0.000034296176,0.00001357425,0.00010647921,0.00003806115,0.000023078543,0.0004385494],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963611,0.0017585838,0.00078391406,0.00048062723,0.00007389344,0.00054187997],"domain_scores_gemma":[0.99871284,0.0002992548,0.00026542792,0.00050828647,0.00019996747,0.000014228174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016430148,0.00030826157,0.0006064407,0.00053608936,0.00014498658,0.0000065254894,0.00028209356,0.0005838679,0.0006162474],"category_scores_gemma":[0.0002611616,0.00023670994,0.00010529587,0.0001976234,0.0010495428,0.00037724932,0.00014535149,0.0002983622,0.000166009],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031690926,0.00012837602,0.0076042693,0.0000182108,0.00014177914,0.000044302735,0.00066704955,0.0000015095028,0.9009364,0.00077753497,0.000031256426,0.086480215],"study_design_scores_gemma":[0.008740392,0.0034109068,0.6804604,0.00019739574,0.0001345352,0.003882269,0.00041183882,0.000008261158,0.29509336,0.00072838704,0.0065124165,0.00041984415],"about_ca_topic_score_codex":0.000066465174,"about_ca_topic_score_gemma":0.000015652713,"teacher_disagreement_score":0.6728561,"about_ca_system_score_codex":0.00010070596,"about_ca_system_score_gemma":0.0001366528,"threshold_uncertainty_score":0.9652751},"labels":[],"label_agreement":null},{"id":"W2343918956","doi":"10.1016/j.vetimm.2015.09.007","title":"Toll-like receptor 10 expression in chicken, cattle, pig, dog, and rat lungs","year":2015,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; University of Saskatchewan","keywords":"Biology; Innate immune system; Receptor; Lipopolysaccharide; Immunity; Toll-like receptor; Immune system; Immunology; Cell biology; Biochemistry","score_opus":0.01801541490574818,"score_gpt":0.2533679917639565,"score_spread":0.23535257685820835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343918956","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95018214,0.045228146,0.0000356996,0.00064378284,0.0022216693,0.00036620093,0.000009125701,0.00011030035,0.0012029638],"genre_scores_gemma":[0.99104196,0.0032573119,0.0002545958,0.00025760438,0.00003472663,0.00012666336,0.00024441254,0.000041799176,0.0047409274],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964207,0.0014205106,0.0007020878,0.0006816282,0.00004671304,0.00072840735],"domain_scores_gemma":[0.9988017,0.00022206719,0.00023111356,0.00059710984,0.000098680044,0.000049321745],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00094709685,0.00044150592,0.00070349296,0.00049070583,0.00028878637,0.000030143045,0.00032292955,0.0009343354,0.00036765868],"category_scores_gemma":[0.00024628863,0.0004118998,0.0000674441,0.00020718339,0.0010422234,0.0004613767,0.00057972205,0.0007521332,0.0006317363],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00359081,0.0001411265,0.0020525458,0.000024356395,0.00006574577,0.00010839672,0.0022668266,0.0000011846108,0.9797283,0.0001836638,0.0021425213,0.009694546],"study_design_scores_gemma":[0.015402746,0.0103979055,0.1463755,0.0002821335,0.000093731665,0.021008737,0.004178236,0.00001026864,0.31134066,0.00069563853,0.4886651,0.0015493386],"about_ca_topic_score_codex":0.00005774266,"about_ca_topic_score_gemma":0.000006453218,"teacher_disagreement_score":0.66838765,"about_ca_system_score_codex":0.00007755818,"about_ca_system_score_gemma":0.00011330958,"threshold_uncertainty_score":0.9998333},"labels":[],"label_agreement":null},{"id":"W2343996994","doi":"10.1038/srep25298","title":"Bufexamac ameliorates LPS-induced acute lung injury in mice by targeting LTA4H","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Peking University; China Postdoctoral Science Foundation; Queen's University; National Natural Science Foundation of China; Louisiana State University","keywords":"Leukotriene B4; Bronchoalveolar lavage; Chemistry; Lipopolysaccharide; Pharmacology; Inflammation; Leukotriene; Mechanism of action; Lung; Immunology; Medicine; Biochemistry; Asthma; Internal medicine; In vitro","score_opus":0.006231211969742365,"score_gpt":0.24159109865202286,"score_spread":0.2353598866822805,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2343996994","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914389,0.000998199,0.00006000672,0.0004529124,0.0062593496,0.00025562872,0.000005784689,0.00008003808,0.00044912717],"genre_scores_gemma":[0.98448765,0.000032518128,0.000030269102,0.000032337528,0.00002311855,0.000027695913,0.00014582674,0.00001538018,0.015205224],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99791294,0.00022381464,0.0006914064,0.0006082616,0.000082017614,0.00048158],"domain_scores_gemma":[0.9989617,0.00008348893,0.00036589894,0.00043241566,0.00013147738,0.00002501341],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019039813,0.00017131021,0.00023640598,0.00027963854,0.0002866358,0.00007899119,0.00016786397,0.00021332291,0.00042625636],"category_scores_gemma":[0.0003598055,0.00012206551,0.000074197116,0.0004270516,0.00020084197,0.00039934152,0.00009856035,0.00015954647,0.0004985861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006616564,0.000033391265,0.0018106767,0.0000053043627,0.00003587114,0.000058479436,0.00022595892,2.062297e-7,0.91100484,0.000016780168,0.08161727,0.0051250476],"study_design_scores_gemma":[0.000261952,0.000032304488,0.000632297,0.0000661234,0.000015375437,0.00008881083,0.000059709306,0.0000020023415,0.9186473,0.00033833657,0.079678446,0.00017736947],"about_ca_topic_score_codex":0.00006283558,"about_ca_topic_score_gemma":0.000005486824,"teacher_disagreement_score":0.014756097,"about_ca_system_score_codex":0.0000893943,"about_ca_system_score_gemma":0.00014384971,"threshold_uncertainty_score":0.64084816},"labels":[],"label_agreement":null},{"id":"W2344278630","doi":"10.1093/jn/132.6.1655s","title":"Assessing Age-Related Changes in Peripheral Blood Leukocyte Phenotypes in Labrador Retriever Dogs Using Flow Cytometry","year":2002,"lang":"en","type":"article","venue":"Journal of Nutrition","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Labrador Retriever; Flow cytometry; Peripheral; Phenotype; Peripheral blood; Medicine; Pathology; Immunology; Biology; Internal medicine; Genetics","score_opus":0.02614030665010453,"score_gpt":0.2638138440684017,"score_spread":0.23767353741829716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2344278630","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9894465,0.00939233,0.00007660147,0.00043547776,0.00043712737,0.00010624243,0.0000010801588,0.000010222109,0.000094386945],"genre_scores_gemma":[0.99799895,0.0010274752,0.00067801255,0.000051363935,0.00008357292,0.0000018291353,0.000011636767,0.000012051733,0.00013509502],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987228,0.00034731766,0.0005390625,0.00010504485,0.00006246736,0.00022333678],"domain_scores_gemma":[0.9994061,0.00008727253,0.00032487806,0.00008158298,0.00008694099,0.000013201038],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00053362816,0.00011715676,0.0003014821,0.0006994932,0.000068904774,0.000045335713,0.000096451906,0.00027905055,0.00040006143],"category_scores_gemma":[0.00013511986,0.000110644556,0.00007536875,0.0005132056,0.00005588587,0.00066976453,0.000017233617,0.00050320476,0.000016359276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032169843,0.0005495688,0.0015395335,0.00004441726,0.000068921414,0.00021885082,0.00095100614,0.00008493403,0.9873322,0.000012749698,0.00014493296,0.008731144],"study_design_scores_gemma":[0.033543322,0.0014953173,0.1308422,0.0039516347,0.0002778385,0.0041952687,0.002409117,0.003146643,0.81247973,0.0007153434,0.0061087976,0.00083479786],"about_ca_topic_score_codex":0.00003857191,"about_ca_topic_score_gemma":0.00003257083,"teacher_disagreement_score":0.17485252,"about_ca_system_score_codex":0.0001771877,"about_ca_system_score_gemma":0.000025780331,"threshold_uncertainty_score":0.45119542},"labels":[],"label_agreement":null},{"id":"W2344633273","doi":"10.4049/jimmunol.186.supp.102.22","title":"Activation of TLR4 on endothelium alone initiates neutrophil adhesion within the liver microcirulation during endotoxemia (102.22)","year":2011,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Intravital microscopy; Endothelium; TLR4; Biology; Immunology; Neutrophil extracellular traps; Inflammation; Endothelial stem cell; Cell biology; Pathology; Medicine; In vivo; Endocrinology; In vitro; Biochemistry","score_opus":0.019793761014791855,"score_gpt":0.21602199424613447,"score_spread":0.1962282332313426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2344633273","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99549234,0.0029287033,0.000069896785,0.00031404654,0.0005758668,0.00020592129,0.0000018123073,0.0000142641065,0.00039712177],"genre_scores_gemma":[0.9986725,0.00090767303,0.00003920264,0.00009344784,0.000058291083,0.000004196515,0.0000069931025,0.000017841143,0.00019989179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977594,0.001075466,0.0007723515,0.000098002434,0.00006968644,0.00022507944],"domain_scores_gemma":[0.99756104,0.000519341,0.0013213401,0.0003386886,0.00025094024,0.000008640814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009680939,0.00017659662,0.00032025643,0.00024171332,0.00028398004,0.000006147894,0.0004493798,0.00023372457,0.00025636095],"category_scores_gemma":[0.00022033915,0.0000996267,0.00013573693,0.0001436988,0.00034208086,0.00024293858,0.00007870552,0.000654737,0.000108640146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0063029523,0.000101637284,0.00016020885,0.000011708502,0.0003373236,0.0000043426494,0.0048918277,0.00003995254,0.985862,0.0009213883,0.000060977465,0.0013056458],"study_design_scores_gemma":[0.0015327716,0.0008398912,0.04756199,0.00010840047,0.000096468655,0.0007265712,0.0009264092,0.0000036755337,0.9473749,0.00049990625,0.00023668159,0.00009234801],"about_ca_topic_score_codex":0.0001199501,"about_ca_topic_score_gemma":0.0000034453644,"teacher_disagreement_score":0.04740178,"about_ca_system_score_codex":0.00006413967,"about_ca_system_score_gemma":0.00008239289,"threshold_uncertainty_score":0.40626588},"labels":[],"label_agreement":null},{"id":"W2345333765","doi":"10.3390/vaccines4020014","title":"Effects of KLK Peptide on Adjuvanticity of Different ODN Sequences","year":2016,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Pfizer (Canada)","funders":"","keywords":"CpG Oligodeoxynucleotide; TLR9; Adjuvant; TLR7; Nuclease; Endosome; Chemistry; CpG site; Antigen; Biology; Cell biology; Receptor; Molecular biology; Innate immune system; Biochemistry; Toll-like receptor; Immunology; DNA; Gene","score_opus":0.006588299633851692,"score_gpt":0.2186837181852074,"score_spread":0.21209541855135572,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2345333765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99841887,0.00057467155,0.000076844575,0.00021692355,0.00027845395,0.0001245729,0.0000031360871,0.000017873406,0.0002886337],"genre_scores_gemma":[0.9982514,0.0002336045,0.0000061345813,0.000014657442,0.000014727167,0.0000065047607,0.0000036627287,0.0000048198726,0.0014644964],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99940115,0.00013283872,0.0002219331,0.000100468074,0.000023023445,0.00012056946],"domain_scores_gemma":[0.99917215,0.00048118166,0.00014351124,0.00014556055,0.00005192655,0.0000056771014],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000077421384,0.00009108391,0.00022802677,0.00008641396,0.00002746032,0.0000011679706,0.00010682519,0.000084376625,0.00018195725],"category_scores_gemma":[0.00019385222,0.000048242193,0.000068012705,0.0000469236,0.000042519692,0.0000504002,0.00002703658,0.000039923525,0.00011205709],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043744588,0.00006627365,0.00452168,0.00006880301,0.000060219554,7.1334887e-7,0.00008317521,2.7441595e-7,0.9803632,0.0008907509,0.0004991861,0.013008312],"study_design_scores_gemma":[0.00078299904,0.0002640198,0.18065137,0.0001805153,0.000020357385,0.0000025526208,0.000011759947,2.4317808e-7,0.8172312,0.0002031227,0.0006009332,0.000050932824],"about_ca_topic_score_codex":0.000028336966,"about_ca_topic_score_gemma":0.000004869569,"teacher_disagreement_score":0.17612968,"about_ca_system_score_codex":0.00000877747,"about_ca_system_score_gemma":0.000014175251,"threshold_uncertainty_score":0.19923043},"labels":[],"label_agreement":null},{"id":"W2370988548","doi":"","title":"The induction of immune response in lymphoid tissues of different sites after intranasal immunization with shigella vaccines","year":2002,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"Immune system; Spleen; Immunology; Biology; Antigen; Lymphatic system; CD3; T cell; Splenocyte; Immunization; CD8","score_opus":0.007114076521880328,"score_gpt":0.20397377697179597,"score_spread":0.19685970044991563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2370988548","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934295,0.005593032,0.00007284848,0.00042376612,0.00010286844,0.00019455717,0.0000014529426,0.000016990665,0.00016502343],"genre_scores_gemma":[0.99716294,0.0010010494,0.000019005209,0.000007036951,0.0000068714075,0.000018933626,0.000019988009,0.000010107669,0.0017540713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99873054,0.00047596724,0.0004825401,0.00011108852,0.000040246694,0.00015959608],"domain_scores_gemma":[0.99913764,0.00029790966,0.00018277716,0.00027630015,0.00010040353,0.0000049909004],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035020846,0.00012313426,0.00022255733,0.00016985071,0.0000722608,0.00000779471,0.00012962143,0.00013030735,0.0005826274],"category_scores_gemma":[0.00008807134,0.000072051065,0.00004346837,0.0002184771,0.00013513646,0.00012081346,0.000034099132,0.00010065369,0.000022340311],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009737402,0.00012550254,0.008984731,0.000016591588,0.00007623953,8.9377704e-7,0.001669196,0.000017225535,0.9740821,0.00022580291,0.000049562837,0.005014718],"study_design_scores_gemma":[0.0011388075,0.0004540684,0.18407421,0.000054996024,0.000017547278,0.000020556781,0.00060076703,0.00003803816,0.81291056,0.00003445913,0.0005703027,0.000085695916],"about_ca_topic_score_codex":0.00009822644,"about_ca_topic_score_gemma":0.000070785885,"teacher_disagreement_score":0.17508948,"about_ca_system_score_codex":0.000027617472,"about_ca_system_score_gemma":0.0000147481205,"threshold_uncertainty_score":0.6379362},"labels":[],"label_agreement":null},{"id":"W2376947412","doi":"10.1371/journal.pone.0155030","title":"Lipopolysaccharide Is Cleared from the Circulation by Hepatocytes via the Low Density Lipoprotein Receptor","year":2016,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":143,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"LDL receptor; PCSK9; Lipopolysaccharide; Hepatocyte; Kexin; Receptor; Endocrinology; Internal medicine; Sepsis; Biology; Lipoprotein; Chemistry; Cholesterol; Medicine; Biochemistry; In vitro","score_opus":0.016989050482071114,"score_gpt":0.18930860215218817,"score_spread":0.17231955167011706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2376947412","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886009,0.0012952524,0.00045757083,0.008925359,0.00012969215,0.00043756142,0.000043446802,0.00007202216,0.000038180737],"genre_scores_gemma":[0.9974728,0.00022049679,0.000033595312,0.00061388715,0.00009810896,0.000051061987,0.000074181706,0.000016130416,0.0014197325],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988702,0.00037889407,0.00024135102,0.00021039128,0.000076975506,0.0002221713],"domain_scores_gemma":[0.99883986,0.00043455054,0.00014422793,0.00048876664,0.00008107532,0.000011554125],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002907746,0.00013173191,0.0001744012,0.000020502042,0.00035198417,0.000024111732,0.00026402946,0.00018930908,0.0022692804],"category_scores_gemma":[0.00021961387,0.00006551486,0.00007052836,0.000049570688,0.00015281474,0.00014627146,0.00007111524,0.00017901766,0.0045243613],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002776784,0.00012349153,0.0018238365,0.000003492987,0.00031144303,1.9314487e-7,0.00050149945,3.6731038e-8,0.97787905,0.00004172727,0.004481438,0.014556113],"study_design_scores_gemma":[0.00051458686,0.000045123623,0.008739284,0.00009590127,0.000070991235,0.0000013509576,0.000055251905,0.000014793157,0.98710227,0.0003090759,0.002936201,0.00011515904],"about_ca_topic_score_codex":0.0010404211,"about_ca_topic_score_gemma":0.00003590074,"teacher_disagreement_score":0.014440953,"about_ca_system_score_codex":0.00004966492,"about_ca_system_score_gemma":0.000029068831,"threshold_uncertainty_score":0.9986428},"labels":[],"label_agreement":null},{"id":"W2377055049","doi":"","title":"Hepatic expressions of TLR4 and MD-2 genes in septic rats during the early phase and intervention with propofol","year":2011,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"TLR4; Messenger RNA; Lipopolysaccharide; Internal medicine; Propofol; Endocrinology; Medicine; Real-time polymerase chain reaction; Reverse transcription polymerase chain reaction; Chemistry; Receptor; Gene; Molecular biology; Biology; Anesthesia; Biochemistry","score_opus":0.011744519983199846,"score_gpt":0.2309893521037152,"score_spread":0.21924483212051538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2377055049","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776095,0.0016684588,0.00009082304,0.000017394923,0.000023066388,0.00021193002,8.512806e-7,0.000009687688,0.00021684832],"genre_scores_gemma":[0.99904114,0.0001478617,0.000050621013,0.000003956969,0.0000018361957,0.000020402622,0.0000030599915,0.0000039170536,0.0007272008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99952674,0.00013400282,0.00015886285,0.00008240166,0.000011516346,0.00008647567],"domain_scores_gemma":[0.99978644,0.000030721763,0.0000632619,0.00009587479,0.00001866443,0.0000050500207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00012988468,0.000059579295,0.00009398519,0.000063320535,0.000063195876,0.0000046466007,0.000039391096,0.00004798333,0.00015907668],"category_scores_gemma":[0.000013591326,0.000032865202,0.000014731193,0.00004265393,0.000117987,0.000109462744,0.00003610308,0.000064277614,0.0000060809034],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061535963,0.000091721515,0.011741957,0.00004187448,0.00003634774,0.0000018889425,0.0029009592,1.3531056e-7,0.97992057,0.00012795636,0.000005827018,0.0045153885],"study_design_scores_gemma":[0.0017409162,0.00036907362,0.117868304,0.00012630656,0.000019584984,0.00003035473,0.00071337586,0.0000079769225,0.8789657,0.000045866065,0.000057617166,0.000054942713],"about_ca_topic_score_codex":0.00021595103,"about_ca_topic_score_gemma":0.00006698508,"teacher_disagreement_score":0.10612635,"about_ca_system_score_codex":0.000004061989,"about_ca_system_score_gemma":0.000007710573,"threshold_uncertainty_score":0.1741778},"labels":[],"label_agreement":null},{"id":"W2379460184","doi":"","title":"The effects of granulocyte-colony stimulating factor on the expression of cytokines in systemic inflammatory response syndrome (SIRS)","year":2009,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"Systemic inflammatory response syndrome; Granulocyte colony-stimulating factor; Lipopolysaccharide; Immune system; Immunology; Medicine; Granulocyte; Lymphocyte; Internal medicine; Endocrinology; Sepsis","score_opus":0.0064695660189943915,"score_gpt":0.22363979958981073,"score_spread":0.21717023357081633,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2379460184","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976825,0.001068484,0.000017758735,0.00020680485,0.00021789139,0.0006575011,0.0000018567162,0.000028471219,0.0001187102],"genre_scores_gemma":[0.9992707,0.000060747236,0.0000045867773,0.00003552399,0.0000050497283,0.00002509383,0.0000034340571,0.000007935352,0.00058696215],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99761003,0.0013749781,0.0005712394,0.00014581354,0.00007007167,0.00022786524],"domain_scores_gemma":[0.99433213,0.004877202,0.00030142328,0.00041845324,0.00006314022,0.000007653695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010062837,0.0001541817,0.00029514084,0.00014714629,0.00016731232,0.000007789879,0.00027368058,0.00019247053,0.000030888335],"category_scores_gemma":[0.0012665363,0.000079156205,0.00009157118,0.00015283689,0.00012533578,0.00007976051,0.000041262978,0.00022848902,0.00003307956],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033064473,0.000041058698,0.0015110903,0.00005880171,0.00002063005,0.000006309921,0.0007373416,0.00005130421,0.99270016,0.00058574794,0.000078825164,0.00090230175],"study_design_scores_gemma":[0.0008710262,0.0006361043,0.16318204,0.0005940395,0.0000066139305,0.000026014866,0.00020152457,0.0000118961625,0.8341883,0.00005921772,0.00014438463,0.00007882708],"about_ca_topic_score_codex":0.000016467357,"about_ca_topic_score_gemma":0.0000034102657,"teacher_disagreement_score":0.16167095,"about_ca_system_score_codex":0.000041258223,"about_ca_system_score_gemma":0.00005412228,"threshold_uncertainty_score":0.3227896},"labels":[],"label_agreement":null},{"id":"W2381833281","doi":"","title":"Preparation and properties of nepeta oil-oxymatrine lipidosome pro vagina thermosensitive gel","year":2014,"lang":"en","type":"article","venue":"Zhongcaoyao","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Science North","funders":"","keywords":"Nepeta; Chromatography; Chemistry; Emulsion; Essential oil; Organic chemistry","score_opus":0.009698810026594697,"score_gpt":0.2209999314544257,"score_spread":0.211301121427831,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2381833281","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947974,0.001302824,0.00008219276,0.00026320873,0.00019452818,0.00014322452,0.0000025664522,0.000047798596,0.0031662765],"genre_scores_gemma":[0.9959859,0.00013959613,0.000026557453,0.000051438823,0.000044620167,0.000016252097,0.000028037543,0.000011631899,0.003695951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991523,0.00022443563,0.00024949652,0.00017636619,0.000028001836,0.00016941271],"domain_scores_gemma":[0.9995147,0.000055265977,0.00013996575,0.00018378023,0.00009619814,0.000010114617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002869726,0.00012416793,0.00022046977,0.00007504619,0.0000910711,0.000012515025,0.00006425745,0.00012505817,0.000041152063],"category_scores_gemma":[0.00011863437,0.00009701998,0.000040781393,0.00006660693,0.00015639009,0.00017485303,0.000054356224,0.000105060986,0.00013957365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004447696,0.000035560515,0.00016945554,0.000058187263,0.000060503487,2.3300403e-7,0.0009349835,0.0000033257215,0.96766686,0.0007062739,0.00016466207,0.02975516],"study_design_scores_gemma":[0.0007785569,0.00024229362,0.004585942,0.00006544676,0.000032116754,0.000031530966,0.00009754453,0.00011784069,0.98001325,0.000088562956,0.013817152,0.00012974473],"about_ca_topic_score_codex":0.000043946176,"about_ca_topic_score_gemma":0.000004376426,"teacher_disagreement_score":0.029625416,"about_ca_system_score_codex":0.000012269665,"about_ca_system_score_gemma":0.000028667992,"threshold_uncertainty_score":0.395636},"labels":[],"label_agreement":null},{"id":"W2396670243","doi":"10.1007/s00705-016-2904-x","title":"Activation of toll-like receptor signaling pathways leading to nitric oxide-mediated antiviral responses","year":2016,"lang":"en","type":"review","venue":"Archives of Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Agriculture and Agri-Food Canada; Ministry of Agriculture - Saskatchewan","keywords":"Biology; Innate immune system; Cell biology; Signal transduction; Receptor; Nitric oxide; Nitric oxide synthase; Cell signaling; Pattern recognition receptor; Pathogen-associated molecular pattern; Intracellular; Downregulation and upregulation; Toll-like receptor; Immune system; Immunology; Biochemistry; Gene","score_opus":0.029369445620841424,"score_gpt":0.2847099237761406,"score_spread":0.2553404781552992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2396670243","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14773709,0.8494979,0.00073654595,0.000051422878,0.00035992218,0.0008201324,0.00018262892,0.000058794034,0.0005555317],"genre_scores_gemma":[0.03639849,0.96126974,0.00030591054,0.000048622474,0.00005143086,0.000083011146,0.000551621,0.00006017644,0.0012309807],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99593306,0.0019303204,0.0012025548,0.00042988264,0.000054925655,0.00044927304],"domain_scores_gemma":[0.99350816,0.004917229,0.0010508944,0.0004520312,0.00004679938,0.00002488072],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00048745886,0.0003937323,0.0018144625,0.0013450765,0.000098134115,0.00000445137,0.00047059145,0.00057429663,0.0001425097],"category_scores_gemma":[0.0009193413,0.00030442872,0.0004494257,0.00029737275,0.00037377057,0.00009848309,0.00019396229,0.0003894383,0.0006165019],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091967545,0.000044149296,0.0000067707024,0.00077501056,0.0002787401,0.0000016805161,0.00020508593,4.093708e-7,0.63367945,0.00022706161,0.00015125045,0.3637107],"study_design_scores_gemma":[0.00069801573,0.00063017476,0.00010919126,0.0059140273,0.0002051657,0.00003663299,0.000048133053,4.379586e-7,0.17172088,0.00011214364,0.82014406,0.00038112665],"about_ca_topic_score_codex":0.000015484131,"about_ca_topic_score_gemma":7.4454783e-7,"teacher_disagreement_score":0.81999284,"about_ca_system_score_codex":0.00003238116,"about_ca_system_score_gemma":0.00029243436,"threshold_uncertainty_score":0.99994075},"labels":[],"label_agreement":null},{"id":"W2396860094","doi":"10.4049/jimmunol.1502466","title":"A Novel Role for TL1A/DR3 in Protection against Intestinal Injury and Infection","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Medicine; Business","score_opus":0.011197272619163257,"score_gpt":0.23299066055188386,"score_spread":0.2217933879327206,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2396860094","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9871599,0.0014732388,0.009285771,0.0013623739,0.00039761173,0.00024729717,0.0000016590318,0.000010248668,0.00006190848],"genre_scores_gemma":[0.99886745,0.00069789885,0.00006585043,0.00004647151,0.000040829065,0.000016050592,0.0000013102108,0.000008488823,0.00025566746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99904823,0.00027153397,0.00040908568,0.00006972511,0.000019247253,0.00018219618],"domain_scores_gemma":[0.99908775,0.00029337668,0.00036099326,0.000109454755,0.00014245533,0.00000599523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010102168,0.000096143514,0.00019129027,0.00024160661,0.00010662995,0.000005595068,0.00011145662,0.00016160411,0.000019122645],"category_scores_gemma":[0.0005258876,0.00005271385,0.000051711657,0.00008978202,0.00018182947,0.00018883648,0.000042778975,0.00026218104,0.000019671284],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030612333,0.000046245706,0.00032068693,0.000004626467,0.0000746582,3.5151544e-7,0.00029821674,0.0000024924727,0.8941421,0.00018345463,0.00006654284,0.101799406],"study_design_scores_gemma":[0.004585471,0.0023555954,0.06170105,0.00023879846,0.000052106898,0.0018317304,0.0002854115,0.000016327436,0.90880555,0.0012660901,0.018716224,0.00014566399],"about_ca_topic_score_codex":0.00006393301,"about_ca_topic_score_gemma":0.000027895549,"teacher_disagreement_score":0.10165374,"about_ca_system_score_codex":0.000068719935,"about_ca_system_score_gemma":0.00006617882,"threshold_uncertainty_score":0.21496084},"labels":[],"label_agreement":null},{"id":"W2399306507","doi":"10.1159/000445772","title":"Critical Role of Cx40 in Reduced Endothelial Electrical Coupling by Lipopolysaccharide and Hypoxia-Reoxygenation","year":2015,"lang":"en","type":"article","venue":"Journal of Vascular Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"Heart and Stroke Foundation of Canada","keywords":"Hypoxia (environmental); Lipopolysaccharide; Medicine; Cardiology; Chemistry; Internal medicine; Oxygen","score_opus":0.03305976934502907,"score_gpt":0.33607808038867076,"score_spread":0.3030183110436417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2399306507","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98250294,0.016692998,0.00012046064,0.00035991592,0.00010266257,0.00010254496,0.0000012593443,0.0000031962531,0.00011401508],"genre_scores_gemma":[0.9990653,0.0007087052,0.00007617728,0.0000066402145,0.000049086237,0.0000031344405,0.0000034904856,0.000008928304,0.000078565456],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983228,0.0005484589,0.00049204205,0.00010751065,0.00024193426,0.00028727882],"domain_scores_gemma":[0.99857336,0.0004647025,0.00010440493,0.00011663482,0.000693689,0.000047177193],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045101843,0.00007274195,0.00026126698,0.0004748627,0.00006157198,0.000020857475,0.00016709774,0.00017778743,0.00003329534],"category_scores_gemma":[0.003484881,0.00006141125,0.000078510566,0.00020508365,0.00016518602,0.00020965397,0.000053593427,0.00068254577,0.000018824052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006883891,0.0001252403,0.00029030413,0.00000923237,0.00006560595,0.0000074514996,0.00034530085,0.0000127373205,0.99165887,0.0007675694,0.00049564085,0.005533659],"study_design_scores_gemma":[0.0018395878,0.0005950862,0.0014545443,0.00005853513,0.000017342512,0.00014340297,0.00051600684,0.0003093409,0.9896413,0.0010971793,0.00425932,0.00006835201],"about_ca_topic_score_codex":0.00009275043,"about_ca_topic_score_gemma":0.0000024065348,"teacher_disagreement_score":0.016562326,"about_ca_system_score_codex":0.00009589993,"about_ca_system_score_gemma":0.00028598166,"threshold_uncertainty_score":0.41719797},"labels":[],"label_agreement":null},{"id":"W2400307825","doi":"10.1038/srep19360","title":"The proprotein convertase PC1/3 regulates TLR9 trafficking and the associated signaling pathways","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Direction Générale de l’offre de Soins; Université Lille 1 - Sciences et Technologies; Institut National Du Cancer; Ministère de l'Education Nationale, de l'Enseignement Supérieur et de la Recherche; Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche; Université de Lille","keywords":"TLR9; Endosome; Cell biology; TLR4; Signalling; Inflammation; Signal transduction; Chemistry; Biology; Immunology; Biochemistry; Intracellular; Gene","score_opus":0.008628992481445207,"score_gpt":0.19427466033359608,"score_spread":0.18564566785215086,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2400307825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9928253,0.0024529744,0.000043081815,0.0013315055,0.002619788,0.00048055284,0.0000012969971,0.00006788069,0.00017760195],"genre_scores_gemma":[0.9901527,0.000027123862,0.0000044211847,0.000019280706,0.000015997179,0.0000386455,0.000020144651,0.0000085103375,0.009713181],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998356,0.0004575203,0.0004523556,0.0003350748,0.00008579864,0.00031324572],"domain_scores_gemma":[0.9984652,0.00050001964,0.00038523003,0.00049515534,0.00014043902,0.000013993729],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0051420103,0.000116519666,0.0001580162,0.00005027846,0.0015313918,0.00018201176,0.0001343597,0.00011418173,0.000074305695],"category_scores_gemma":[0.0012418142,0.000046975776,0.00007812896,0.00012123789,0.0012565044,0.00013858012,0.0000687818,0.00011368635,0.000061937346],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014050984,0.00001327444,0.00016189605,0.0000031750972,0.0000662706,0.000020490575,0.00095310376,0.0000013747874,0.97514725,0.00077345985,0.0020796875,0.020639524],"study_design_scores_gemma":[0.00089709414,0.000025800142,0.00058892334,0.000094104966,0.000028237724,0.00018725338,0.0002549219,0.000016367321,0.95090264,0.0055380845,0.041349594,0.00011696601],"about_ca_topic_score_codex":0.000021123058,"about_ca_topic_score_gemma":0.000015932223,"teacher_disagreement_score":0.039269906,"about_ca_system_score_codex":0.000030326148,"about_ca_system_score_gemma":0.00010331037,"threshold_uncertainty_score":0.9997685},"labels":[],"label_agreement":null},{"id":"W2400844733","doi":"10.1152/ajpgi.2001.280.2.g291","title":"Endothelial E- and P-selectin expression in iNOS- deficient mice exposed to polymicrobial sepsis","year":2001,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Sepsis; Nitric oxide synthase; Lipopolysaccharide; E-selectin; Myeloperoxidase; Endothelium; Selectin; Peritonitis; Peritoneum; Cell adhesion molecule; In vivo; VCAM-1; Biology; Nitric oxide; Lung; Immunology; Inflammation; Chemistry; Medicine; Adhesion; Cell adhesion; Internal medicine; Endocrinology; ICAM-1; Pathology","score_opus":0.007065399625514914,"score_gpt":0.21546373370755403,"score_spread":0.20839833408203912,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2400844733","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859935,0.0005652116,0.00015266033,0.00030593172,0.00016944345,0.00014737817,0.000006269355,0.0000150932165,0.000038651026],"genre_scores_gemma":[0.9978346,0.00023580351,0.0012923848,0.00040936063,0.000117477495,0.000006659966,0.000010673946,0.000016306836,0.00007673187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978394,0.00064095826,0.0005937858,0.0003624128,0.000043902655,0.0005195614],"domain_scores_gemma":[0.9987405,0.0003992945,0.00049900776,0.00014829129,0.0001390994,0.0000738174],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027981913,0.00027679722,0.0006763497,0.00038013808,0.0001380959,0.0000112024445,0.0002169838,0.00008014025,0.00010174035],"category_scores_gemma":[0.00016927178,0.00022564095,0.00010089862,0.00027295254,0.00061561784,0.00014360229,0.00016171476,0.00049142604,0.000038427366],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048877746,0.00015855287,0.0018103578,0.000011096355,0.00003404235,0.000020556252,0.00072360586,0.000045290588,0.98577714,0.000056349905,0.0001939224,0.006281299],"study_design_scores_gemma":[0.0031724367,0.008762533,0.44444522,0.00034148686,0.0000540647,0.0072622676,0.001758196,0.000029529088,0.5313204,0.00023779382,0.0021933827,0.00042270508],"about_ca_topic_score_codex":0.0001642,"about_ca_topic_score_gemma":0.000014473807,"teacher_disagreement_score":0.45445675,"about_ca_system_score_codex":0.00004554642,"about_ca_system_score_gemma":0.00007955934,"threshold_uncertainty_score":0.9201371},"labels":[],"label_agreement":null},{"id":"W2401355484","doi":"10.14670/hh-16.771","title":"Earliest lymphoid colonization of neonatal rat lymph nodes: an antigen-specific process?","year":2001,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Lymph node; Lymph; Antigen; Lymphatic system; Pathology; Population; Biology; Cell; Afferent; Immunology; Medicine; Anatomy","score_opus":0.014350984724687307,"score_gpt":0.21648212145337467,"score_spread":0.20213113672868738,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401355484","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99423534,0.002933756,0.0005871647,0.00010339077,0.0005222799,0.00040893903,0.0000055504115,0.00007660791,0.0011269973],"genre_scores_gemma":[0.99701756,0.0010658317,0.000016455226,0.00004598875,0.000045308505,0.00021720912,0.00027853996,0.000016964523,0.0012961274],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99893934,0.00014570387,0.0003219397,0.00021068177,0.000048587233,0.00033373878],"domain_scores_gemma":[0.99936795,0.00004617839,0.00016479072,0.00024840323,0.0001507337,0.000021967106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029591005,0.00013059586,0.0001967658,0.00014233534,0.00013601007,0.000019447263,0.0001913181,0.00019193719,0.00022760128],"category_scores_gemma":[0.00006739374,0.00012411922,0.00004722414,0.00026691932,0.00014423655,0.0003647918,0.000027231974,0.00006835937,0.00014073955],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026468057,0.00040173155,0.11367355,0.00004979147,0.00016087241,0.000019462159,0.002428066,0.00010049833,0.221865,0.0010036574,0.0009081192,0.65674245],"study_design_scores_gemma":[0.0022418234,0.000057579084,0.44478115,0.000015022377,0.000013944141,0.00023885735,0.0005537867,0.00001400098,0.45469534,0.00011534046,0.09702322,0.0002499302],"about_ca_topic_score_codex":0.000025820791,"about_ca_topic_score_gemma":0.0000045056117,"teacher_disagreement_score":0.65649253,"about_ca_system_score_codex":0.0000416272,"about_ca_system_score_gemma":0.000059439208,"threshold_uncertainty_score":0.5061435},"labels":[],"label_agreement":null},{"id":"W2401394690","doi":"10.1128/microbiolspec.mchd-0007-2015","title":"Evolution of Myeloid Cells","year":2016,"lang":"en","type":"review","venue":"Microbiology Spectrum","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institutes of Health","keywords":"Myeloid; Biology; Innate immune system; Context (archaeology); Immunity; Myeloid cells; Acquired immune system; Immune system; Immunology","score_opus":0.010823846033815518,"score_gpt":0.2454099163483151,"score_spread":0.23458607031449957,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2401394690","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00010985663,0.99565053,0.00014646271,0.000049629598,0.0022052722,0.00059393357,0.0002656871,0.0000827466,0.00089590007],"genre_scores_gemma":[0.00021334583,0.9912346,0.000019300629,0.000011166842,0.00010354602,0.000040284773,0.00058587187,0.000051904655,0.0077399584],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99689,0.0008434232,0.0011012843,0.0005303342,0.000015678495,0.0006192728],"domain_scores_gemma":[0.9980317,0.00031868726,0.0009034453,0.0006807081,0.00004938713,0.000016095564],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000407792,0.00052943296,0.0020109927,0.00054428633,0.00011454569,0.0000054520638,0.0005673192,0.0015588776,0.0018685213],"category_scores_gemma":[0.00004477529,0.00036477344,0.0007267441,0.00023692111,0.0005173721,0.000066353336,0.00018965293,0.0005000067,0.009642876],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009171343,0.00008478648,0.000001999683,0.0025100403,0.00082570815,0.000005696041,0.000036271693,7.768979e-8,0.63942885,0.0023980683,0.008738323,0.34587845],"study_design_scores_gemma":[0.0003818278,0.00015520646,0.0000019078998,0.0031462447,0.00029456138,0.00035119953,0.000007141129,1.1726853e-8,0.073816374,0.00009496186,0.92139316,0.00035740613],"about_ca_topic_score_codex":0.000029006238,"about_ca_topic_score_gemma":0.0000073482784,"teacher_disagreement_score":0.9126548,"about_ca_system_score_codex":0.0003168003,"about_ca_system_score_gemma":0.00043914138,"threshold_uncertainty_score":0.99988043},"labels":[],"label_agreement":null},{"id":"W2404326603","doi":"10.1385/1-59259-367-4:219","title":"Superantigen-Induced Changes in Epithelial Ion Transport and Barrier Function: Use of an In Vitro Model","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Medical Research Council; Canadian Institutes of Health Research","keywords":"Cell biology; Immune system; Microfold cell; Enteroendocrine cell; Intestinal epithelium; Barrier function; Small intestine; Epithelium; Biology; Microbiology; Microvillus; Glycocalyx; In vitro; Chemistry; Immunology; Biochemistry; Endocrine system; Hormone; Membrane","score_opus":0.053184103000745754,"score_gpt":0.2429269963715194,"score_spread":0.18974289337077366,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2404326603","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805784,0.0008020987,0.000056063407,0.000005758907,0.00012128033,0.0002400556,0.000009714995,0.000015666425,0.0006914927],"genre_scores_gemma":[0.99879897,0.00010181462,0.00003568376,0.000034017576,0.000008285321,0.00003061278,0.00003302289,0.00001127307,0.0009463457],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991336,0.0002228645,0.00024505693,0.0001848178,0.000027353142,0.00018629586],"domain_scores_gemma":[0.9997022,0.000027418133,0.000048953407,0.00018278505,0.000026701668,0.000011942722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024045339,0.000115530056,0.00020828906,0.00016691192,0.000053005933,0.0000065830623,0.000055180557,0.00019001233,0.000030434272],"category_scores_gemma":[0.000013971112,0.000112383495,0.00002699036,0.00001678656,0.00006641507,0.00013871213,0.0000091236925,0.00015511054,0.0000016186605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010612942,0.000037505473,0.0000666971,0.00001883943,0.000019926738,0.0000038967382,0.002303968,0.00005222972,0.98700273,0.0016514758,0.0000027269914,0.0077786967],"study_design_scores_gemma":[0.0015347295,0.00012690922,0.0029979923,0.0000250937,0.000017436552,0.000006824263,0.00008488172,0.00018149614,0.99037695,0.00011444957,0.004406568,0.00012668209],"about_ca_topic_score_codex":0.00042674007,"about_ca_topic_score_gemma":0.00065174577,"teacher_disagreement_score":0.0076520145,"about_ca_system_score_codex":0.000011622386,"about_ca_system_score_gemma":0.000029798503,"threshold_uncertainty_score":0.45828658},"labels":[],"label_agreement":null},{"id":"W2404362072","doi":"10.1097/mib.0000000000000408","title":"Type 3 Muscarinic Receptors Contribute to Clearance of Citrobacter rodentium","year":2015,"lang":"en","type":"article","venue":"Inflammatory Bowel Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Fonds Wetenschappelijk Onderzoek; Hospital for Sick Children; Agricultural Research Service; U.S. Department of Veterans Affairs; National Institute of Allergy and Infectious Diseases; Vlaamse regering; U.S. Department of Agriculture","keywords":"Citrobacter rodentium; Biology; Immunology; Macrophage; Immune system; Muscarinic acetylcholine receptor; Receptor; In vitro; Biochemistry","score_opus":0.012897176699653205,"score_gpt":0.24120128613084793,"score_spread":0.22830410943119472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2404362072","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99447006,0.0023143431,0.00004393799,0.00016452959,0.0019295241,0.00032095393,0.000034020653,0.000109956345,0.0006126571],"genre_scores_gemma":[0.9968147,0.000049848877,0.00001998968,0.00015091569,0.00007212577,0.00002720982,0.00011597198,0.000022427505,0.0027267903],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986328,0.0002461891,0.00046078413,0.00024268268,0.00008509708,0.00033242902],"domain_scores_gemma":[0.99886215,0.00007846943,0.00017767386,0.00042085498,0.0003638089,0.000097073935],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026021333,0.00018576672,0.00028759055,0.00016239229,0.00007146737,0.00001830932,0.0002710804,0.00015955023,0.00040350866],"category_scores_gemma":[0.00052409444,0.00017550509,0.00012254782,0.00017214565,0.0001331321,0.00023325726,0.00011168117,0.00012826992,0.0024586788],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022324247,0.00063527597,0.29456636,0.000302952,0.0011215764,0.00008103636,0.0032919897,0.0006886531,0.46723753,0.0029657409,0.19432959,0.012455022],"study_design_scores_gemma":[0.0026426194,0.00038778118,0.6088049,0.00015084885,0.00012730857,0.0000140451375,0.0003411062,0.000007341539,0.09227739,0.00021346597,0.29458743,0.00044577985],"about_ca_topic_score_codex":0.000023043878,"about_ca_topic_score_gemma":0.000008203786,"teacher_disagreement_score":0.37496015,"about_ca_system_score_codex":0.00006217727,"about_ca_system_score_gemma":0.00022320892,"threshold_uncertainty_score":0.998318},"labels":[],"label_agreement":null},{"id":"W2405650697","doi":"10.1016/j.molimm.2016.05.005","title":"A mutated cholera toxin without the ADP-ribosyltransferase activity induces cytokine production and inhibits apoptosis of splenocytes in mice possibly via toll-like receptor-4 signaling","year":2016,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Splenocyte; Apoptosis; Cytokine; Tumor necrosis factor alpha; Cholera toxin; In vivo; Biology; Immunology; Signal transduction; Ex vivo; Toll-like receptor; Cancer research; Immune system; Cell biology; Endocrinology; Innate immune system; Biochemistry","score_opus":0.007581275717264654,"score_gpt":0.21789998557219684,"score_spread":0.21031870985493217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2405650697","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929126,0.0027261826,0.0007572755,0.0025199507,0.00045757164,0.00053607154,0.000012368176,0.000050788203,0.000027184384],"genre_scores_gemma":[0.999182,0.00037758745,0.00005527913,0.00008721705,0.0000147205255,0.00007035296,0.00003037168,0.000026920123,0.00015557327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99769366,0.00091831066,0.00048596022,0.00043299966,0.000059284084,0.00040977064],"domain_scores_gemma":[0.9990963,0.00017828464,0.00022532706,0.00035896333,0.0001270201,0.000014145043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00056414545,0.00027233054,0.00043479653,0.00031604894,0.00015329223,0.000013622422,0.000223557,0.00037899252,0.00008761096],"category_scores_gemma":[0.0002649645,0.00018375106,0.000084094514,0.00033528492,0.00050122966,0.00025235408,0.00009329729,0.00036460735,0.00004374024],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018042127,0.0001240819,0.00025018057,0.000021299606,0.0002554165,0.0000024695062,0.0012205759,0.0000075290814,0.97701305,0.000051286206,0.000015245862,0.01923465],"study_design_scores_gemma":[0.0017761647,0.0003638868,0.0036360647,0.00018566436,0.000048858255,0.00010802928,0.00015558153,0.0000022637623,0.9929071,0.000050722552,0.00054021546,0.00022544208],"about_ca_topic_score_codex":0.00024642362,"about_ca_topic_score_gemma":0.000027792996,"teacher_disagreement_score":0.019009208,"about_ca_system_score_codex":0.00006840232,"about_ca_system_score_gemma":0.00007997798,"threshold_uncertainty_score":0.7493151},"labels":[],"label_agreement":null},{"id":"W2406528391","doi":"10.14670/hh-15.199","title":"Current understanding of macrophage type 1 cytokine responses during intracellular infections.","year":2000,"lang":"en","type":"review","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Macrophage; Intracellular; Cytokine; Cell biology; Intracellular parasite; Biology; Immunology; Immunity; Acquired immune system; Effector; Interferon gamma; Tumor necrosis factor alpha; Interleukin 4; Immune system; In vitro; Genetics","score_opus":0.06214497866475928,"score_gpt":0.2836735255825787,"score_spread":0.22152854691781942,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2406528391","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0025011422,0.99443996,0.000019664252,0.000007738918,0.0012686675,0.001076697,0.000034284094,0.000076146156,0.0005757008],"genre_scores_gemma":[0.006112711,0.99072313,0.0000018444985,0.0000016112949,0.00006830884,0.0004282815,0.00025307343,0.00004182605,0.0023691875],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978094,0.00059848663,0.0007914255,0.0003014609,0.00004959875,0.00044958844],"domain_scores_gemma":[0.99885535,0.00024186708,0.0004381423,0.00039627272,0.000043569078,0.000024776384],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005068257,0.0003317864,0.0010378694,0.0006104664,0.00017847937,0.000019390292,0.00022189037,0.0004594254,0.00041539228],"category_scores_gemma":[0.00019545892,0.00028813782,0.00033256048,0.00048369754,0.00015343104,0.000100219586,0.00007886849,0.00059837865,0.00030906475],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026830783,0.000086636115,0.000007636536,0.003903012,0.00034972234,0.00001073474,0.000039891554,7.169535e-7,0.0002004168,0.00018017244,0.00021673953,0.994736],"study_design_scores_gemma":[0.00038098102,0.00003535493,0.0002048672,0.0015234599,0.00045428603,0.00017378417,0.000010118059,6.156674e-8,0.002835106,0.000029005578,0.9940854,0.00026763207],"about_ca_topic_score_codex":0.000009579642,"about_ca_topic_score_gemma":0.0000014182982,"teacher_disagreement_score":0.9944684,"about_ca_system_score_codex":0.0003261555,"about_ca_system_score_gemma":0.00015056663,"threshold_uncertainty_score":0.9999571},"labels":[],"label_agreement":null},{"id":"W2406928924","doi":"10.1021/nn505634h","title":"Amino Acid-Dependent Attenuation of Toll-like Receptor Signaling by Peptide-Gold Nanoparticle Hybrids","year":2015,"lang":"en","type":"article","venue":"ACS Nano","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; University of Toronto; BC Children's Hospital; University Health Network; University of British Columbia","funders":"Canadian Institutes of Health Research; Burroughs Wellcome Fund; Michael Smith Health Research BC; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; Crohn's and Colitis Foundation of Canada; University of British Columbia","keywords":"TLR4; Receptor; Signal transduction; Innate immune system; Lipopolysaccharide; Inflammation; Immune system; Toll-like receptor; Cell biology; Pattern recognition receptor; Peptide; Biology; Chemistry; Biochemistry; Immunology","score_opus":0.0171304021507204,"score_gpt":0.23392128704738632,"score_spread":0.21679088489666593,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2406928924","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9966491,0.0019229862,0.00006432845,0.00027117747,0.00047071258,0.0001777582,0.000010359801,0.000033234057,0.00040032947],"genre_scores_gemma":[0.9931677,0.000034372526,0.000043512795,0.00009292708,0.000016624597,0.00002012393,0.0001296112,0.000012568418,0.006482569],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99883634,0.00023014628,0.00041832714,0.00018604295,0.00007002099,0.0002591361],"domain_scores_gemma":[0.99941224,0.00007022002,0.00015714065,0.0002271441,0.000112558635,0.000020688612],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00060064555,0.00012030079,0.0002139695,0.00010534104,0.000039996354,0.00001033999,0.00015660335,0.00014778074,0.00014111774],"category_scores_gemma":[0.00015341611,0.00011510292,0.00004372441,0.00014778986,0.00006649532,0.00021890733,0.000053100866,0.00011726994,0.0007127263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029496808,0.00008334003,0.0016245873,0.000007775114,0.00003028385,0.0000014956117,0.0006017211,0.000018630128,0.97629654,0.00006065149,0.018586397,0.0023936261],"study_design_scores_gemma":[0.0015071413,0.00020026224,0.0005109627,0.00003225863,0.00001536981,0.000012365878,0.0003950046,0.0000061737023,0.9774799,0.00003969634,0.019676216,0.000124677],"about_ca_topic_score_codex":0.00009279664,"about_ca_topic_score_gemma":0.000007809151,"teacher_disagreement_score":0.0060822396,"about_ca_system_score_codex":0.00007647164,"about_ca_system_score_gemma":0.000077120065,"threshold_uncertainty_score":0.9160893},"labels":[],"label_agreement":null},{"id":"W2409158180","doi":"10.1038/srep21244","title":"Hyporesponsiveness to the anti-inflammatory action of interleukin-10 in type 2 diabetes","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":131,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Interleukin 10; Inflammation; Cytokine; Immunology; Tumor necrosis factor alpha; Type 2 diabetes; Medicine; Receptor; Diabetes mellitus; Endocrinology; Internal medicine; Biology","score_opus":0.013446752286614287,"score_gpt":0.24648466539919903,"score_spread":0.23303791311258473,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409158180","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920121,0.00035480314,0.000020614792,0.00047732366,0.00672548,0.00022121628,9.587471e-7,0.000021303184,0.00016622787],"genre_scores_gemma":[0.9898934,0.00000964813,0.000005830404,0.000015517287,0.000015995342,0.000015332678,0.000013783721,0.0000068547242,0.010023652],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874985,0.00022761457,0.0004499822,0.00028460543,0.00006387286,0.00022404669],"domain_scores_gemma":[0.9988388,0.00014297698,0.00023153384,0.0005844142,0.00019019646,0.000012116301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018438017,0.00008898072,0.00015914747,0.00027453492,0.00011397751,0.000021047024,0.00014791849,0.00009156839,0.0004912001],"category_scores_gemma":[0.00066426233,0.00004998464,0.00005282518,0.00035424109,0.0002219938,0.00015527236,0.00007736235,0.00006513851,0.00048975996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012286314,0.000019677254,0.007367292,0.00000789735,0.00001658554,0.000011561643,0.0002852245,0.0000071461964,0.9724061,0.000036162506,0.0071107214,0.012608765],"study_design_scores_gemma":[0.000114427676,0.000037574817,0.037514932,0.00007545429,0.0000051278666,0.000025498113,0.000074773656,5.436406e-7,0.77576107,0.00018978077,0.18613887,0.00006197896],"about_ca_topic_score_codex":0.000008488202,"about_ca_topic_score_gemma":0.000028230932,"teacher_disagreement_score":0.19664507,"about_ca_system_score_codex":0.000045012515,"about_ca_system_score_gemma":0.00014158656,"threshold_uncertainty_score":0.62950367},"labels":[],"label_agreement":null},{"id":"W2409254493","doi":"10.1385/1-59259-688-6:169","title":"Immunostimulatory CpG Motifs and DNA Vaccines","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"CpG site; Immune system; Secretion; Innate immune system; Biology; CpG Oligodeoxynucleotide; Lytic cycle; Cell biology; DNA; Immunology; Gene; DNA methylation; Gene expression; Genetics; Biochemistry","score_opus":0.022946687836951984,"score_gpt":0.23453114809758838,"score_spread":0.2115844602606364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2409254493","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8961626,0.035353176,0.00008394303,0.000016251917,0.0005085575,0.00028273626,0.0000028025618,0.00012107134,0.06746882],"genre_scores_gemma":[0.97756976,0.0001589684,0.000015767078,0.000073624666,0.000017515396,0.000033503322,0.000012758918,0.000017240092,0.022100875],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991101,0.00020857043,0.00022478876,0.00019442612,0.000023158567,0.00023892369],"domain_scores_gemma":[0.99949753,0.00008208457,0.00007223858,0.0002874573,0.00004706265,0.000013606107],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001905127,0.00014865768,0.00017839845,0.00007228217,0.00025140023,0.00002565103,0.000106123865,0.00015684507,0.00021675052],"category_scores_gemma":[0.00006649416,0.0001353692,0.00004711543,0.000009232774,0.000100129466,0.00007612249,0.00004959249,0.00015378495,0.0000909666],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003300149,0.00006973837,0.000120685,0.000077548706,0.0004075105,0.000014276859,0.0022654224,0.000011081554,0.73486173,0.20939225,0.005832399,0.04661734],"study_design_scores_gemma":[0.0012288706,0.00007667275,0.0026204088,0.00002526768,0.00004343884,0.000048578284,0.00006342091,0.000004681537,0.46113965,0.00070123596,0.53384805,0.00019976418],"about_ca_topic_score_codex":0.00006329262,"about_ca_topic_score_gemma":0.00000504612,"teacher_disagreement_score":0.5280156,"about_ca_system_score_codex":0.000011288842,"about_ca_system_score_gemma":0.00002688887,"threshold_uncertainty_score":0.5520196},"labels":[],"label_agreement":null},{"id":"W2410421212","doi":"10.1385/1-59259-688-6:95","title":"DNA-Based Immunization of Neonatal Mice","year":2003,"lang":"en","type":"article","venue":"Humana Press eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Immunization; Immune system; Offspring; Antigen; Immunology; Antibody; Medicine; Biology; Pregnancy; Genetics","score_opus":0.02219566843722509,"score_gpt":0.2321605482427678,"score_spread":0.2099648798055427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2410421212","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8436669,0.019902918,0.0060839755,0.000024083176,0.0009185397,0.00068495,0.00001619289,0.0001787307,0.12852372],"genre_scores_gemma":[0.99310124,0.000024606885,0.00010492049,0.00003848587,0.000006801978,0.000015769683,0.00007019799,0.0000128387055,0.006625133],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991809,0.00026184903,0.00025129688,0.000119345736,0.000028540277,0.00015805573],"domain_scores_gemma":[0.99945587,0.00006868685,0.00013233723,0.00025850214,0.00007779535,0.0000068384265],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018316186,0.00009994771,0.0001446633,0.0000801905,0.000107694985,0.000007554238,0.00013264477,0.00013175201,0.0002213828],"category_scores_gemma":[0.00005888707,0.000097337754,0.00005866672,0.000013039431,0.00011458175,0.000048950384,0.000019996984,0.00010423323,0.000045555076],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002827069,0.000050226503,0.00002215163,0.000060569855,0.00011735796,0.0000024746344,0.001268558,0.00005386797,0.9175561,0.053692635,0.0008939376,0.025999391],"study_design_scores_gemma":[0.0007801175,0.00005326806,0.00018860196,0.000021315267,0.000021740076,0.000005640175,0.000049026832,0.000008821995,0.80085164,0.00008394633,0.19785063,0.00008522941],"about_ca_topic_score_codex":0.00006582267,"about_ca_topic_score_gemma":0.000007820263,"teacher_disagreement_score":0.19695668,"about_ca_system_score_codex":0.000010470319,"about_ca_system_score_gemma":0.00004485347,"threshold_uncertainty_score":0.39693183},"labels":[],"label_agreement":null},{"id":"W2415630562","doi":"10.1097/shk.0000000000000474","title":"What's New in Shock? November 2015","year":2015,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Single-nucleotide polymorphism; Medicine; Pleasure; Bioinformatics; Psychology; Biology; Genetics; Neuroscience; Gene","score_opus":0.023969214853151195,"score_gpt":0.2739569629423766,"score_spread":0.2499877480892254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2415630562","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94772404,0.023752574,0.000347897,0.0060618585,0.0048406203,0.00034980406,0.000001923716,0.00012259703,0.016798662],"genre_scores_gemma":[0.9113662,0.00027002025,0.00012921005,0.00057547155,0.00014595823,0.000008016548,0.00011163133,0.000021838854,0.08737164],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992305,0.00011251031,0.00021866869,0.00015431989,0.00003073513,0.0002532548],"domain_scores_gemma":[0.9996069,0.000041803323,0.000047273446,0.00023167093,0.000044199696,0.000028127251],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00027116734,0.00010694409,0.00015927001,0.00010689607,0.000027880096,0.000030866908,0.00013656967,0.00019567061,0.00064555544],"category_scores_gemma":[0.00009298762,0.000096625234,0.000040185936,0.00012937209,0.00003628729,0.00045925556,0.000057826168,0.0001860927,0.00500043],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013855986,0.00015212302,0.0024583123,0.000013941849,0.00012567497,0.00003284113,0.005639032,0.000093460745,0.22152944,0.002315061,0.65773815,0.10851638],"study_design_scores_gemma":[0.002730927,0.00015214308,0.0035445688,0.000054696837,0.000012678097,0.000057808946,0.0013636731,0.000018744215,0.09435687,0.0015413562,0.8959331,0.00023341975],"about_ca_topic_score_codex":0.00026552012,"about_ca_topic_score_gemma":0.00018400546,"teacher_disagreement_score":0.23819497,"about_ca_system_score_codex":0.0000637928,"about_ca_system_score_gemma":0.00020193667,"threshold_uncertainty_score":0.99577427},"labels":[],"label_agreement":null},{"id":"W2416781505","doi":"10.1111/imm.12627","title":"Toll‐like receptor‐2 exacerbates murine acute viral hepatitis","year":2016,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"TLR2; Mouse hepatitis virus; Virology; Immunology; Biology; Microbiology; Medicine; Innate immune system; Immune system; Pathology; Infectious disease (medical specialty)","score_opus":0.0049271856337570015,"score_gpt":0.21293584186169875,"score_spread":0.20800865622794176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2416781505","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98605,0.0049589816,0.00038612753,0.0029660119,0.0031673384,0.00023253275,0.000031325293,0.00025678088,0.0019509095],"genre_scores_gemma":[0.9525826,0.0034343377,0.00012498182,0.00024774845,0.000076724464,0.00007523477,0.00014021825,0.000036443525,0.043281693],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817395,0.00038559458,0.00044200476,0.00036104515,0.00003535105,0.00060207426],"domain_scores_gemma":[0.99894196,0.00023866135,0.00017006828,0.0005383536,0.00009409837,0.000016850405],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00021211253,0.00025956336,0.0003785849,0.00019745748,0.00021239433,0.000013590439,0.00035762187,0.00046612413,0.005731734],"category_scores_gemma":[0.00010308728,0.00018306955,0.00013403171,0.00011030829,0.00042477943,0.00028498675,0.00018385582,0.00023069316,0.013178071],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006373757,0.000052323165,0.001294405,0.0000032098321,0.0005221686,0.000012740394,0.0001598129,1.1192067e-7,0.93406,0.0022051497,0.011487135,0.049565583],"study_design_scores_gemma":[0.0017876085,0.00039312805,0.008707388,0.00003057115,0.000034536275,0.00020269169,0.000027460952,3.1768317e-7,0.56984496,0.00029683777,0.4184511,0.00022337778],"about_ca_topic_score_codex":0.00015104043,"about_ca_topic_score_gemma":0.00002124347,"teacher_disagreement_score":0.40696397,"about_ca_system_score_codex":0.00010442891,"about_ca_system_score_gemma":0.00006997753,"threshold_uncertainty_score":0.99517715},"labels":[],"label_agreement":null},{"id":"W2417041468","doi":"10.14288/1.0073595","title":"Ontogeny and genetic correlates of the TLR mediated pediatric innate immune response","year":2013,"lang":"en","type":"article","venue":"cIRcle (University of British Columbia)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Innate immune system; Immune system; Immunology; Biology; Medicine","score_opus":0.003808826019984841,"score_gpt":0.14995442177111068,"score_spread":0.14614559575112585,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2417041468","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99580485,0.0034420597,0.000011925305,0.00012445544,0.00018221115,0.0002894705,0.000030074085,0.000022852319,0.00009208319],"genre_scores_gemma":[0.9976443,0.0006774361,0.000024557954,0.000012695172,0.000004587677,8.214432e-7,0.000013340295,0.0000075106427,0.0016147313],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9990778,0.00033947208,0.00018891385,0.0001682446,0.000047720438,0.00017788113],"domain_scores_gemma":[0.99915063,0.00019450647,0.0002203088,0.00024750226,0.00016936252,0.000017696428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020914186,0.000043328568,0.00021553086,0.00005817013,0.00020372694,0.000017715673,0.00025986813,0.00018915092,0.00035617984],"category_scores_gemma":[0.00014700518,0.00010097428,0.00008628888,0.0002288667,0.0003663049,0.00016073475,0.00016909237,0.00015019363,0.000106022104],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040420916,0.00014682527,0.20569412,0.000097698525,0.00020243507,0.000023960438,0.0012273885,0.0000053260533,0.66049916,0.0000020274733,0.0029347576,0.12876207],"study_design_scores_gemma":[0.0011678771,0.00010470048,0.99728495,0.00004272566,0.00006151916,0.00008890974,0.0005548643,0.000015998585,0.0003101095,0.0000556101,0.00020977756,0.00010293323],"about_ca_topic_score_codex":0.031970434,"about_ca_topic_score_gemma":0.0046705687,"teacher_disagreement_score":0.79159087,"about_ca_system_score_codex":0.000021388503,"about_ca_system_score_gemma":0.00008478413,"threshold_uncertainty_score":0.97447574},"labels":[],"label_agreement":null},{"id":"W2418325077","doi":"","title":"Inflammation 2003-Sixth World Congress. 2-6 August 2003, Vancouver, Canada.","year":2003,"lang":"en","type":"other","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Political science; History","score_opus":0.007947158337005612,"score_gpt":0.1834091014683226,"score_spread":0.175461943131317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2418325077","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000114832874,0.00994667,0.000026178257,0.00016935667,0.024641836,0.002084837,0.000119841,0.00025366794,0.9626428],"genre_scores_gemma":[0.00035004228,0.00040245685,0.00002361618,0.00023297594,0.00022542098,0.0010856452,0.00076561095,0.0002616163,0.9966526],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978598,0.00037570926,0.00050164585,0.0004017756,0.00010314344,0.0007579403],"domain_scores_gemma":[0.9986244,0.000043878692,0.0005184755,0.00053351675,0.00022883755,0.000050895847],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033304235,0.00043078212,0.0005307405,0.0004730699,0.000121581346,0.00002831862,0.00029796106,0.00061490264,0.008485708],"category_scores_gemma":[0.00041996266,0.0004168987,0.000055890014,0.0007500216,0.00012025076,0.00009478294,0.000050663948,0.00048144738,0.0005206703],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000808301,0.00001825146,0.00007040788,0.000049492828,0.00030823174,0.000012783136,0.000007853392,0.0000012584256,0.00012998175,0.0003369707,0.97026134,0.028722584],"study_design_scores_gemma":[0.0010511461,0.0000067450314,0.0010135093,0.000054051903,0.00008404256,0.000010293815,0.00002052699,4.0284715e-7,0.00898111,0.000007535204,0.988319,0.00045164578],"about_ca_topic_score_codex":0.0979304,"about_ca_topic_score_gemma":0.8091966,"teacher_disagreement_score":0.71126616,"about_ca_system_score_codex":0.00032598898,"about_ca_system_score_gemma":0.0009670906,"threshold_uncertainty_score":0.9998283},"labels":[],"label_agreement":null},{"id":"W2419402007","doi":"","title":"[Role of progesterone in acylation stimulating protein-receptor C5L2 pathway in adipocytes and preadipocytes].","year":2008,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"","keywords":"Internal medicine; Endocrinology; Receptor; Messenger RNA; Progesterone receptor; Western blot; Adipocyte; Chemistry; Mole; Protein kinase A; Blot; Phosphorylation; Biology; Adipose tissue; Medicine; Biochemistry; Gene","score_opus":0.013612935445275538,"score_gpt":0.1934232413279415,"score_spread":0.17981030588266597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2419402007","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99564964,0.0027258012,0.0000045395,0.000043688226,0.00003770683,0.0011708315,0.0000029302541,0.000022188278,0.00034265476],"genre_scores_gemma":[0.99872553,0.000022554672,0.00006393408,0.0000063520624,0.000008842671,0.00078800996,0.000033325156,0.000009431185,0.00034200164],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989861,0.00018871091,0.00036722864,0.0001639558,0.000030252226,0.000263716],"domain_scores_gemma":[0.9996242,0.00008946908,0.00012793105,0.00011643528,0.000030235804,0.000011750455],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003469413,0.00010324645,0.0002061703,0.00019765084,0.00004396507,0.000004476483,0.000064637265,0.0001508631,0.000020640526],"category_scores_gemma":[0.00020397759,0.000098744385,0.000021334958,0.00015168398,0.00009151301,0.00021096379,0.000037588543,0.00014449243,0.000015272448],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004306501,0.0000985092,0.077303186,0.00003314723,0.000021971737,0.0000016171285,0.0015819516,0.000027040256,0.8135297,0.00013636632,0.0000051074257,0.10683078],"study_design_scores_gemma":[0.0009907011,0.00004183391,0.51029813,0.000028990007,0.000002015231,0.000008887431,0.00005865383,0.00002462732,0.48798242,0.00003264093,0.0004607258,0.00007034763],"about_ca_topic_score_codex":0.00009203255,"about_ca_topic_score_gemma":0.000029446477,"teacher_disagreement_score":0.43299496,"about_ca_system_score_codex":0.00004403406,"about_ca_system_score_gemma":0.000032705666,"threshold_uncertainty_score":0.4026679},"labels":[],"label_agreement":null},{"id":"W2420202036","doi":"10.1016/j.imbio.2016.06.009","title":"Toll-like receptor stimulation in cancer: A pro- and anti-tumor double-edged sword","year":2016,"lang":"en","type":"review","venue":"Immunobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":218,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Cancer Research; Institut National Du Cancer; Université Pierre et Marie Curie; Université Paris Descartes; Fondation ARC pour la Recherche sur le Cancer; Institut National de la Santé et de la Recherche Médicale","keywords":"Immune system; Receptor; Inflammation; Innate immune system; Toll-like receptor; Biology; Tumor microenvironment; Cancer research; Stimulation; Immunology; Cell biology; Cancer cell; Cancer; Neuroscience","score_opus":0.03658804820500713,"score_gpt":0.3305327066975541,"score_spread":0.293944658492547,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2420202036","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009061031,0.98615235,0.00001163457,0.00010083097,0.0026173545,0.0016845941,0.000078573896,0.000094487266,0.00019912879],"genre_scores_gemma":[0.0019217619,0.99370813,0.000014601417,0.00004696897,0.00009892627,0.0006675817,0.0008654175,0.000065120155,0.0026115025],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961786,0.0010980784,0.0012494653,0.00073098834,0.00003212418,0.00071074435],"domain_scores_gemma":[0.9980989,0.000502871,0.0007196157,0.0005671953,0.00008832564,0.00002308716],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00065925345,0.0006392887,0.0021779516,0.00060986256,0.00017887162,0.000025786287,0.00041318257,0.0012557337,0.00092400593],"category_scores_gemma":[0.00008581794,0.0004593463,0.0002719814,0.00029133924,0.0003692519,0.0001797412,0.00022997479,0.0007413199,0.0014314413],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006901573,0.00008497147,0.000104910185,0.001667564,0.0004895621,0.000010847624,0.00014105413,4.868743e-7,0.018713813,0.0003436166,0.0010873657,0.9766657],"study_design_scores_gemma":[0.002563696,0.00017514559,0.0001489116,0.00565521,0.00017768741,0.00022611923,0.000013955326,3.9352878e-7,0.00070733024,0.000018003244,0.98976755,0.0005460036],"about_ca_topic_score_codex":0.00018721366,"about_ca_topic_score_gemma":0.000034893994,"teacher_disagreement_score":0.9886802,"about_ca_system_score_codex":0.000261578,"about_ca_system_score_gemma":0.0004737447,"threshold_uncertainty_score":0.9999893},"labels":[],"label_agreement":null},{"id":"W2422086590","doi":"10.4142/jvs.2017.18.1.17","title":"Expression of von Willebrand factor, pulmonary intravascular macrophages, and Toll-like receptors in lungs of septic foals","year":2017,"lang":"en","type":"article","venue":"Journal of Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"University of Saskatchewan","keywords":"Inflammation; Medicine; Foal; Sepsis; Pathology; Lung; Von Willebrand factor; Peripheral blood mononuclear cell; Immunology; Biology; Internal medicine; Platelet","score_opus":0.01679335951282181,"score_gpt":0.2762504070323517,"score_spread":0.2594570475195299,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2422086590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961689,0.0029286304,0.000015451356,0.00005242133,0.00063706725,0.000077979676,0.0000015442408,0.0000017629892,0.00011622851],"genre_scores_gemma":[0.99889004,0.000764511,0.00015308287,0.0000061889095,0.000009888085,5.5139645e-7,6.24326e-7,0.000003978599,0.00017110285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99899024,0.00013721279,0.0004789529,0.00012506326,0.00010079764,0.00016771472],"domain_scores_gemma":[0.9988352,0.00006540535,0.0007042992,0.00025684971,0.00011464001,0.00002361953],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00093675853,0.0000925649,0.00029721373,0.00034326347,0.00017018856,0.000020250156,0.00045317344,0.00009081602,0.00007418746],"category_scores_gemma":[0.00021483374,0.000070955146,0.00006619637,0.00010223691,0.00075077906,0.00082518446,0.00016030092,0.00016764716,0.0000021394196],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006062548,0.00005309803,0.0041703847,0.000041451367,0.000012358208,0.000039164734,0.0005043185,0.0000039826014,0.98460037,0.0000071072604,0.000024409988,0.009937131],"study_design_scores_gemma":[0.0007570917,0.0013269398,0.19566306,0.00039636862,0.0000103230495,0.00080688705,0.00018143839,0.000008674382,0.79924536,0.00003358328,0.0014894197,0.000080864476],"about_ca_topic_score_codex":0.000016682065,"about_ca_topic_score_gemma":3.9536602e-7,"teacher_disagreement_score":0.19149268,"about_ca_system_score_codex":0.000025201905,"about_ca_system_score_gemma":0.000117668096,"threshold_uncertainty_score":0.2893467},"labels":[],"label_agreement":null},{"id":"W2463284495","doi":"10.1152/ajpgi.2001.281.3.g654","title":"NO-mesalamine protects colonic epithelial cells against apoptotic damage induced by proinflammatory cytokines","year":2001,"lang":"en","type":"article","venue":"American Journal of Physiology-Gastrointestinal and Liver Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":true,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Proinflammatory cytokine; Apoptosis; Cell biology; Chemistry; Cancer research; Inflammation; Immunology; Medicine; Biology; Biochemistry","score_opus":0.005814206408391632,"score_gpt":0.20353659005371724,"score_spread":0.1977223836453256,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2463284495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985514,0.00034576457,0.00005667328,0.00018250874,0.0003597492,0.00033789309,0.000015026859,0.000046780646,0.00010418922],"genre_scores_gemma":[0.9981377,0.00037273683,0.0004286963,0.0002578893,0.00030153792,0.000021425569,0.000055399618,0.0000371083,0.00038748127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99697226,0.0009161845,0.00085169444,0.00044757503,0.000081572,0.000730717],"domain_scores_gemma":[0.99746335,0.00040862782,0.0012894275,0.00030508082,0.00043620903,0.000097294826],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00038075476,0.00046204706,0.0010138138,0.00025067048,0.00024033373,0.00001662598,0.00043580827,0.00014553907,0.00015565722],"category_scores_gemma":[0.0002243918,0.00036877225,0.00022213215,0.00025383467,0.0012834868,0.00027098757,0.00016988868,0.00090305984,0.0002501559],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003530915,0.0002804122,0.00014269962,0.00004239399,0.00017384313,0.000033599794,0.00015689824,0.000027021006,0.9918363,0.00006483689,0.0006855243,0.003025529],"study_design_scores_gemma":[0.0047268453,0.021927642,0.11361058,0.00037708698,0.00016676851,0.0036438757,0.00065613195,0.000158659,0.84358203,0.0003010554,0.009983251,0.0008660431],"about_ca_topic_score_codex":0.00008174181,"about_ca_topic_score_gemma":0.0000029402715,"teacher_disagreement_score":0.14825426,"about_ca_system_score_codex":0.00006214149,"about_ca_system_score_gemma":0.00019338477,"threshold_uncertainty_score":0.99987644},"labels":[],"label_agreement":null},{"id":"W2463321422","doi":"10.3899/jrheum.151386","title":"Cell Membrane-bound TLR2 and TLR4: Potential Predictors of Active Systemic Lupus Erythematosus and Lupus Nephritis","year":2016,"lang":"en","type":"letter","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"TLR2; Lupus nephritis; Immunology; Medicine; TLR4; TLR9; Immune system; Rheumatology; Innate immune system; Receptor; Nephritis; Peripheral blood mononuclear cell; Anti-nuclear antibody; Lupus erythematosus; Internal medicine; Autoantibody; Biology; Antibody; Gene; Biochemistry; Gene expression","score_opus":0.004571530769910778,"score_gpt":0.19014169191417482,"score_spread":0.18557016114426406,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2463321422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95005333,0.0253532,0.00008563291,0.019291349,0.0047652964,0.0002947092,0.000050320305,0.000015150719,0.00009101897],"genre_scores_gemma":[0.9706011,0.023051338,0.0000137743555,0.0033614435,0.0001730719,0.000007066634,0.000036877358,0.0000677877,0.0026875613],"study_design_codex":"not_applicable","study_design_gemma":"case_report","domain_scores_codex":[0.996541,0.0014641669,0.0012058008,0.00021171298,0.00011520856,0.00046209252],"domain_scores_gemma":[0.9960859,0.0011527291,0.0021347452,0.00034250415,0.0002565707,0.000027588687],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00077135715,0.0003847911,0.0012963285,0.0004029287,0.00019705541,0.000018788158,0.00044629897,0.0013332326,0.00013195904],"category_scores_gemma":[0.00011192948,0.00023444854,0.00019113629,0.00007074105,0.0009380121,0.0001960739,0.00016582294,0.0014766771,0.000032470336],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0068309377,0.00006718028,0.00795732,0.00231724,0.0038720833,0.0002975067,0.0059774225,0.0000036445144,0.31265098,0.00015969398,0.6567454,0.0031206158],"study_design_scores_gemma":[0.008519405,0.0011975977,0.0003993089,0.0025112557,0.0013659509,0.7661702,0.0014102454,0.0000027102424,0.04096498,0.0004260029,0.17643103,0.0006012788],"about_ca_topic_score_codex":0.00010713836,"about_ca_topic_score_gemma":0.000005931822,"teacher_disagreement_score":0.7658727,"about_ca_system_score_codex":0.000050989092,"about_ca_system_score_gemma":0.0002081998,"threshold_uncertainty_score":0.9999632},"labels":[],"label_agreement":null},{"id":"W2467146152","doi":"10.1016/j.chom.2016.06.002","title":"CRIg Functions as a Macrophage Pattern Recognition Receptor to Directly Bind and Capture Blood-Borne Gram-Positive Bacteria","year":2016,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":231,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipoteichoic acid; Peptidoglycan; Biology; Microbiology; Staphylococcus aureus; Complement receptor; Bacteria; Macrophage; Complement system; Gram-negative bacteria; Complement receptor 1; Phagocytosis; Immunology; Antibody; In vitro; Escherichia coli; Biochemistry","score_opus":0.005206324256600556,"score_gpt":0.19760113417150757,"score_spread":0.192394809914907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2467146152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993542,0.0015049487,0.00040629628,0.0012881854,0.0009286128,0.00047845455,0.00047819084,0.00009181034,0.0012815146],"genre_scores_gemma":[0.97237796,0.00038220308,0.00012588853,0.0006262117,0.00008546372,0.00006369688,0.0007066295,0.00004369935,0.025588231],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984902,0.00028257354,0.00031397236,0.00046198248,0.000030081039,0.00042116496],"domain_scores_gemma":[0.9992291,0.00014893014,0.00012919874,0.00028548983,0.00014855177,0.000058754955],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018637787,0.000274113,0.00026530196,0.00017353099,0.00027268674,0.000048768336,0.0001307427,0.0003444767,0.0033516055],"category_scores_gemma":[0.00006798566,0.0002117934,0.00008928787,0.00014986224,0.00013764974,0.00019345053,0.000108760105,0.00020530088,0.009930695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039470047,0.00010955533,0.00010967332,0.000018361357,0.00009777473,0.0000099902645,0.000775348,2.0162602e-8,0.94856703,0.000003820567,0.008694018,0.04121972],"study_design_scores_gemma":[0.0014988241,0.0003483703,0.004810402,0.00014898086,0.00010387313,0.00011605211,0.00016066081,4.989566e-8,0.8933989,0.00001325366,0.09910131,0.00029931145],"about_ca_topic_score_codex":0.00025763756,"about_ca_topic_score_gemma":0.000037778143,"teacher_disagreement_score":0.0904073,"about_ca_system_score_codex":0.000054429405,"about_ca_system_score_gemma":0.000051879095,"threshold_uncertainty_score":0.9975595},"labels":[],"label_agreement":null},{"id":"W2473378026","doi":"10.1038/cmi.2016.32","title":"Sam68 is a regulator of Toll-like receptor signaling","year":2016,"lang":"en","type":"article","venue":"Cellular and Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Eye Institute; McGill University; National Institutes of Health; Case Western Reserve University","keywords":"TLR3; TLR2; Cell biology; MAPK/ERK pathway; Signal transduction; Kinase; Biology; Toll-like receptor; Innate immune system; Regulator; TLR4; Receptor; Gene; Biochemistry","score_opus":0.005046705889021481,"score_gpt":0.19273598909152656,"score_spread":0.18768928320250508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2473378026","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9747511,0.019305766,0.00406459,0.0008090297,0.00053042057,0.00018977352,0.000014861907,0.000044185977,0.00029024237],"genre_scores_gemma":[0.9962786,0.00048215914,0.00016265943,0.00020801339,0.0000129036225,0.000016350185,0.00004859035,0.000024240077,0.0027665063],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99862,0.0002824351,0.00040618083,0.00030891094,0.00003833509,0.0003441865],"domain_scores_gemma":[0.9991887,0.000098821394,0.00017534985,0.00042342712,0.00009517892,0.000018501358],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002452509,0.00019654463,0.00035435337,0.00016451834,0.00010144385,0.000006597643,0.0001901143,0.00037654582,0.0008586098],"category_scores_gemma":[0.00007307766,0.00014576559,0.00013608349,0.00009623484,0.0004120093,0.0000831867,0.000119674536,0.00013092763,0.00029637737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003316299,0.000035814806,0.00007821118,0.00001585024,0.00029491953,0.000007607115,0.0002783349,1.4655596e-7,0.9833548,0.0024721615,0.0009006145,0.012229877],"study_design_scores_gemma":[0.0013383601,0.00022091974,0.00012698106,0.000061041814,0.000044171058,0.000053859207,0.00009205126,5.776338e-7,0.88088393,0.00029272318,0.1167147,0.00017067032],"about_ca_topic_score_codex":0.000018211744,"about_ca_topic_score_gemma":4.0334382e-7,"teacher_disagreement_score":0.11581409,"about_ca_system_score_codex":0.000023326778,"about_ca_system_score_gemma":0.00005889047,"threshold_uncertainty_score":0.94011754},"labels":[],"label_agreement":null},{"id":"W2475715907","doi":"10.1016/j.immuni.2016.07.015","title":"Lyn Kinase Suppresses the Transcriptional Activity of IRF5 in the TLR-MyD88 Pathway to Restrain the Development of Autoimmunity","year":2016,"lang":"en","type":"article","venue":"Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":106,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Japan Science and Technology Agency; Yokohama City University; Eisai Canada; Eisai; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science","keywords":"LYN; IRF5; Interferon regulatory factors; Immunology; Transcription factor; Biology; Kinase; Autoimmunity; Cancer research; Immune system; Innate immune system; Cell biology; Proto-oncogene tyrosine-protein kinase Src; Gene; Genetics","score_opus":0.027364403916062263,"score_gpt":0.2567315130405002,"score_spread":0.22936710912443792,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2475715907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99543625,0.0005191088,0.00031552376,0.0024296266,0.0001715543,0.00043443037,0.000039042272,0.000013747435,0.0006407152],"genre_scores_gemma":[0.9994331,0.000031796913,0.00004031483,0.00007392094,0.000007956218,0.00006619871,0.000015487309,0.0000074604604,0.00032373948],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967007,0.0023513746,0.00047654854,0.00011647274,0.000098723416,0.00025619636],"domain_scores_gemma":[0.9974722,0.0014618316,0.0001841753,0.0007654912,0.0001081321,0.000008159514],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028530732,0.0001533311,0.00022417086,0.000088784946,0.0004216849,0.000009718581,0.00089920056,0.00013430793,0.00021602251],"category_scores_gemma":[0.00046060854,0.0000652564,0.000100215846,0.0002520027,0.00049795164,0.00013510116,0.0001246668,0.0003929606,0.00004824943],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061614707,0.00023057712,0.0002851492,0.000015540109,0.00006450711,4.787078e-7,0.012116026,0.0000035634116,0.9424619,0.0015482672,0.000095751435,0.04256206],"study_design_scores_gemma":[0.0004744883,0.00007550801,0.40315926,0.00006013448,0.000009295003,0.000006839795,0.0012545168,3.593754e-7,0.57681733,0.00017761605,0.01789563,0.00006901782],"about_ca_topic_score_codex":0.000491054,"about_ca_topic_score_gemma":0.00039138764,"teacher_disagreement_score":0.4028741,"about_ca_system_score_codex":0.000045031542,"about_ca_system_score_gemma":0.00028938305,"threshold_uncertainty_score":0.3243302},"labels":[],"label_agreement":null},{"id":"W2475790156","doi":"10.3390/v8070207","title":"Local Innate Responses to TLR Ligands in the Chicken Trachea","year":2016,"lang":"en","type":"article","venue":"Viruses","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Innate immune system; Biology; Interferon; Receptor; Immunology; RIG-I; Pattern recognition receptor; Immune system; Respiratory tract; Toll-like receptor; Microbiology; Respiratory system; Virology; Anatomy","score_opus":0.023986713476053502,"score_gpt":0.27453208100815096,"score_spread":0.25054536753209744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2475790156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943592,0.00075363024,0.00031139754,0.0036354878,0.00018934802,0.00016232215,0.000009705249,0.00003897733,0.00053991505],"genre_scores_gemma":[0.99667823,0.000087035376,0.0000068760187,0.0017208637,0.000022553124,0.00003655091,0.0000037604966,0.000008488702,0.0014356637],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990578,0.0003109037,0.0002161429,0.0001467025,0.00003164944,0.0002367862],"domain_scores_gemma":[0.99919105,0.00048323735,0.000038679063,0.00025578844,0.00002202654,0.000009237487],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005794898,0.000102525795,0.00012671492,0.00015935882,0.0000901832,0.000013090022,0.00023932799,0.00012837703,0.00021538035],"category_scores_gemma":[0.0002889747,0.00005214483,0.000037856116,0.00017099519,0.00011781223,0.00013837812,0.00004094596,0.00011402397,0.002359301],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014143751,0.000056748366,0.0014815576,0.0000025135694,0.000020945632,0.000007419495,0.0013664083,8.3674286e-7,0.955667,0.0008480015,0.0035668588,0.03556732],"study_design_scores_gemma":[0.0006076769,0.00019568198,0.042143565,0.00003929437,0.0000060064535,0.000023442806,0.00025137415,2.1512508e-7,0.7383424,0.00012745548,0.21816729,0.000095605494],"about_ca_topic_score_codex":0.000082974904,"about_ca_topic_score_gemma":0.0000501668,"teacher_disagreement_score":0.21732461,"about_ca_system_score_codex":0.000024789808,"about_ca_system_score_gemma":0.000046366134,"threshold_uncertainty_score":0.9984175},"labels":[],"label_agreement":null},{"id":"W2482594761","doi":"10.1002/glia.23033","title":"TGFβ regulates persistent neuroinflammation by controlling Th1 polarization and ROS production via monocyte‐derived dendritic cells","year":2016,"lang":"en","type":"article","venue":"Glia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"ASTER","funders":"Multiple Sclerosis Society; Uppsala Multidisciplinary Center for Advanced Computational Science; Schweizerische Multiple Sklerose Gesellschaft; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Experimental autoimmune encephalomyelitis; Biology; Immunology; Microglia; Neuroinflammation; Multiple sclerosis; Myeloid; Transforming growth factor; Monocyte; Cancer research; Cell biology; Inflammation","score_opus":0.005848499389767862,"score_gpt":0.18514775407752515,"score_spread":0.1792992546877573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2482594761","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936922,0.0016968931,0.0021682035,0.0012818973,0.0006726853,0.00035701686,0.0000061847854,0.00008574533,0.00003915178],"genre_scores_gemma":[0.99584293,0.00017826275,0.000038113263,0.00003160828,0.00004581251,0.00001782437,0.000078659104,0.000015342597,0.0037514686],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989805,0.00021045958,0.00028047818,0.0002644188,0.000038268736,0.00022585936],"domain_scores_gemma":[0.9994902,0.0000681187,0.00014476481,0.00018665945,0.00009353006,0.000016743545],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020556526,0.00014230268,0.00016544508,0.000086495435,0.0002248517,0.0000254203,0.00006624922,0.0001615331,0.00006762338],"category_scores_gemma":[0.00011053561,0.00010986169,0.00005862709,0.0000636685,0.00009936171,0.00034559632,0.000026333882,0.00008261685,0.00020164526],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000269417,0.000024268831,0.00021917117,0.000013737732,0.000054797558,5.8607344e-7,0.000212958,0.000009548725,0.988308,0.000057649406,0.00041809297,0.010411743],"study_design_scores_gemma":[0.0013624518,0.00011852557,0.002909904,0.00004791589,0.000057407222,0.000036447338,0.00006854175,0.000118446165,0.99194384,0.000091655915,0.0030965614,0.00014832856],"about_ca_topic_score_codex":0.00002237152,"about_ca_topic_score_gemma":0.0000028690863,"teacher_disagreement_score":0.010263415,"about_ca_system_score_codex":0.000047881997,"about_ca_system_score_gemma":0.000018164914,"threshold_uncertainty_score":0.44800296},"labels":[],"label_agreement":null},{"id":"W2500944829","doi":"10.3389/fimmu.2016.00291","title":"Insights into Soluble Toll-Like Receptor 2 as a Downregulator of Virally Induced Inflammation","year":2016,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"","keywords":"Immune system; Pathogen-associated molecular pattern; Biology; Toll-like receptor; TLR2; Inflammation; Cell biology; Pattern recognition receptor; Innate immune system; Antigen; Receptor; Immunology; Signal transduction; Acquired immune system; Genetics","score_opus":0.011182941430450587,"score_gpt":0.25444854952659113,"score_spread":0.24326560809614053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2500944829","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004654529,0.9823312,0.00028250404,0.00007136727,0.010510107,0.0012184414,0.0000077168625,0.000090768066,0.0008333768],"genre_scores_gemma":[0.0009216696,0.9939567,0.0003774653,0.000020434585,0.00012694078,0.0003041465,0.00051392335,0.0000867027,0.0036920228],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99498075,0.0015760715,0.002001416,0.00069345086,0.00008866855,0.00065965264],"domain_scores_gemma":[0.9970897,0.00024355362,0.0014106066,0.0010312152,0.00019968479,0.000025279483],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00042915935,0.00071503106,0.002843899,0.0018244245,0.00017929003,0.00001817156,0.0009448752,0.0026712099,0.000400499],"category_scores_gemma":[0.000320059,0.0005695251,0.0005113264,0.00061071216,0.0006710443,0.00037140277,0.0003391396,0.0009382204,0.0019643425],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054811675,0.00006466762,0.0000049561886,0.0011578277,0.0011666546,0.0000063245952,0.0007751756,9.382827e-8,0.08052973,0.0018951253,0.0037934643,0.91005784],"study_design_scores_gemma":[0.001450214,0.0005296292,0.000016281518,0.0053852685,0.00018954101,0.000046682406,0.00014304824,4.504709e-7,0.021947801,0.0008324608,0.96888244,0.000576194],"about_ca_topic_score_codex":0.00012200241,"about_ca_topic_score_gemma":0.000022986253,"teacher_disagreement_score":0.96508896,"about_ca_system_score_codex":0.0005282267,"about_ca_system_score_gemma":0.0010172575,"threshold_uncertainty_score":0.99967563},"labels":[],"label_agreement":null},{"id":"W2507511859","doi":"10.1016/j.imbio.2016.08.013","title":"Pneumococcal DnaJ modulates dendritic cell-mediated Th1 and Th17 immune responses through Toll-like receptor 4 signaling pathway","year":2016,"lang":"en","type":"article","venue":"Immunobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China; McGill University Health Centre","keywords":"Toll-like receptor; Immune system; Cell biology; Signal transduction; Dendritic cell; Immunology; Receptor; Biology; Toll; Innate immune system; Genetics","score_opus":0.010417361124593499,"score_gpt":0.22203654419115104,"score_spread":0.21161918306655755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2507511859","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9784691,0.017181695,0.00021679666,0.0012383229,0.0017698967,0.00045037596,0.000088159555,0.00023225091,0.0003534282],"genre_scores_gemma":[0.99161255,0.0017871951,0.00011334841,0.00018307823,0.000075366384,0.00007813912,0.00029542664,0.00005476574,0.0058001466],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99614125,0.0013446977,0.0008959334,0.000650201,0.000051563464,0.0009163628],"domain_scores_gemma":[0.99679834,0.0020523914,0.00031933736,0.0006427514,0.00015102564,0.00003613773],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007294357,0.00047746595,0.0007125292,0.0002181928,0.00046467897,0.000035041336,0.00043202136,0.00082003506,0.0012218574],"category_scores_gemma":[0.0004889799,0.0003360274,0.00019508172,0.00017426723,0.00081946567,0.00038687213,0.00026769636,0.0004122308,0.0023412632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017467049,0.000075371514,0.00080730725,0.000021965934,0.0002089642,0.000014713441,0.0006745206,8.0264357e-7,0.9919061,0.0004734856,0.00022127984,0.0038487983],"study_design_scores_gemma":[0.002816571,0.00056317926,0.0059696697,0.00012518054,0.000043197106,0.00026572775,0.0003807724,0.0000015845219,0.9138594,0.00035824123,0.07512644,0.00048999354],"about_ca_topic_score_codex":0.00009797278,"about_ca_topic_score_gemma":0.000005413121,"teacher_disagreement_score":0.07804664,"about_ca_system_score_codex":0.000091612514,"about_ca_system_score_gemma":0.0001582731,"threshold_uncertainty_score":0.99990916},"labels":[],"label_agreement":null},{"id":"W2517398070","doi":"10.1038/srep31695","title":"Curcumin suppresses NTHi-induced CXCL5 expression via inhibition of positive IKKβ pathway and up-regulation of negative MKP-1 pathway","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of General Medical Sciences; National Institute on Deafness and Other Communication Disorders; Georgia Research Alliance","keywords":"Wogonin; MAPK/ERK pathway; p38 mitogen-activated protein kinases; Chemokine; CXCL5; Signal transduction; Curcumin; NF-κB; Phosphorylation; Biology; Medicine; Immunology; Pharmacology; Inflammation; Cell biology; Traditional Chinese medicine","score_opus":0.009318754403471564,"score_gpt":0.21947603907456656,"score_spread":0.21015728467109498,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2517398070","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99544513,0.0002649877,0.0012428168,0.00008414337,0.0021969415,0.00037202277,0.000020566427,0.000027837117,0.00034555382],"genre_scores_gemma":[0.9977118,0.000006755629,0.000048195358,0.000003919088,0.000014751166,0.000017556913,0.00014727977,0.000010645941,0.0020391052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817824,0.00031031037,0.0007175834,0.00045233098,0.0001270412,0.00021450147],"domain_scores_gemma":[0.99804056,0.00021292616,0.00084996526,0.00044860333,0.00042538307,0.000022561762],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009790958,0.0001549936,0.00028276455,0.0002541479,0.0002105583,0.00002040562,0.00006109081,0.00021391344,0.00026273204],"category_scores_gemma":[0.00039795804,0.00010839388,0.00008173075,0.00020694657,0.0005065166,0.00045997428,0.000090061774,0.00008154359,0.000019219222],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020666319,0.00006077855,0.0003283091,0.000029325418,0.00002704952,0.0000067603914,0.0017251119,9.4830096e-7,0.9830254,0.0001350965,0.0005325713,0.013922037],"study_design_scores_gemma":[0.00055536884,0.00013143831,0.0077041998,0.0003936203,0.000016161363,0.000089768335,0.00020873196,0.0000028999261,0.98651266,0.003359996,0.00089345174,0.00013168606],"about_ca_topic_score_codex":0.000056496894,"about_ca_topic_score_gemma":0.0000065513486,"teacher_disagreement_score":0.013790351,"about_ca_system_score_codex":0.00003219259,"about_ca_system_score_gemma":0.00012687998,"threshold_uncertainty_score":0.4420174},"labels":[],"label_agreement":null},{"id":"W2518307266","doi":"10.1002/eji.201546178","title":"Aging of the immune system: Focus on inflammation and vaccination","year":2016,"lang":"en","type":"review","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":444,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health and Social Services Centre University Institute of Geriatrics of Sherbrooke; Université de Sherbrooke","funders":"National Institute on Aging; National Institutes of Health; Agence Nationale de la Recherche; Agency for Science, Technology and Research; Canadian Institutes of Health Research; Ministero dell’Istruzione, dell’Università e della Ricerca; National Institute of Allergy and Infectious Diseases; European Commission; Université de Sherbrooke","keywords":"Biology; Immune system; Inflammation; Vaccination; Focus (optics); Immunology","score_opus":0.01424197475623569,"score_gpt":0.24565635564640498,"score_spread":0.2314143808901693,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2518307266","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012006628,0.99431187,0.00009606697,0.00017540989,0.0020203197,0.00032377997,0.000006116167,0.000016112577,0.0018496903],"genre_scores_gemma":[0.026708294,0.97252446,0.0000113317265,0.0000029703785,0.00013067016,0.0000032033802,0.000008924916,0.000046858975,0.0005633009],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9928945,0.0048592757,0.0017801798,0.00016868157,0.0000683558,0.00022900959],"domain_scores_gemma":[0.9952002,0.00044747486,0.003649788,0.00045424924,0.00023745645,0.000010806142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021457043,0.00031304985,0.0012085701,0.0005215933,0.00016131952,0.00001606931,0.00061204296,0.00022770022,0.00006191999],"category_scores_gemma":[0.0003961599,0.00017070054,0.0004679018,0.00017060775,0.00015451996,0.00014712974,0.0001963713,0.00071567646,0.0002451504],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012270827,0.000016540072,9.808198e-7,0.0010704295,0.00069405,0.000015150386,0.00015055755,2.8463762e-7,0.014202078,0.003226076,0.00006140063,0.9804397],"study_design_scores_gemma":[0.001676329,0.00066953705,0.00071125326,0.02650347,0.00059613254,0.0027839039,0.000095642994,1.5414999e-7,0.022464072,0.00003262508,0.9442086,0.0002582831],"about_ca_topic_score_codex":0.000001784875,"about_ca_topic_score_gemma":1.9190058e-7,"teacher_disagreement_score":0.98018146,"about_ca_system_score_codex":0.00014963119,"about_ca_system_score_gemma":0.0001644878,"threshold_uncertainty_score":0.6960966},"labels":[],"label_agreement":null},{"id":"W2519298775","doi":"","title":"Novel signaling paradigm regulating TOLL-like receptors in innate immune cells","year":2014,"lang":"en","type":"article","venue":"Journal of Clinical & Cellular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Ectodomain; Cell biology; TLR9; Innate immune system; Receptor; Biology; Toll-like receptor; Signal transduction; Biochemistry","score_opus":0.02488642588983156,"score_gpt":0.2923888281559245,"score_spread":0.2675024022660929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2519298775","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9790635,0.005840484,0.004861113,0.0007805833,0.008877462,0.00018478086,9.754768e-7,0.00002961572,0.00036146978],"genre_scores_gemma":[0.9967258,0.0005527902,0.0010247816,0.00020581862,0.00026261032,0.000004108582,0.000023105831,0.000039914103,0.0011610658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9927676,0.0020583665,0.0040835566,0.00034084934,0.00011403235,0.00063563115],"domain_scores_gemma":[0.9947622,0.002118241,0.0023469066,0.0005054425,0.00022053374,0.000046703968],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0070304554,0.0003221199,0.0014351632,0.00048624814,0.00015884862,0.000028894916,0.0006756653,0.0009679626,0.000407216],"category_scores_gemma":[0.0015962676,0.0002806824,0.0006119575,0.00030826163,0.0004300867,0.0003058486,0.00016242944,0.0019566435,0.0003141357],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017008183,0.00034536174,0.00097328174,0.000015722526,0.00038052042,0.000021037838,0.0002930877,0.00025243935,0.9712587,0.00083484227,0.00023580767,0.023688374],"study_design_scores_gemma":[0.009520762,0.0019109563,0.007603634,0.0003488406,0.00013552832,0.0004451972,0.0003292187,0.00017001115,0.79661417,0.00093934505,0.18147814,0.00050417887],"about_ca_topic_score_codex":0.00004435127,"about_ca_topic_score_gemma":0.0000052845767,"teacher_disagreement_score":0.18124233,"about_ca_system_score_codex":0.00007403276,"about_ca_system_score_gemma":0.00021270994,"threshold_uncertainty_score":0.99996454},"labels":[],"label_agreement":null},{"id":"W2520338817","doi":"10.1097/01.jto.0000282978.73370.61","title":"M17-04: TLR9 agonists","year":2007,"lang":"en","type":"article","venue":"Journal of Thoracic Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"TLR9; Toll-Like Receptor 9; Innate immune system; CpG Oligodeoxynucleotide; CpG site; Toll-like receptor; Immune system; Proinflammatory cytokine; Biology; Receptor; Immunology; Gene; Cancer research; Genetics; Inflammation; DNA methylation; Gene expression","score_opus":0.016522163634744052,"score_gpt":0.38079443214208913,"score_spread":0.36427226850734507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2520338817","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97773343,0.0034558557,0.0019560743,0.0020001363,0.003463274,0.000091353,0.0000011504766,0.000020848289,0.011277859],"genre_scores_gemma":[0.99439484,0.00014545067,0.0008124774,0.000364372,0.00024929852,8.8291887e-7,0.000007131011,0.00001217436,0.0040133963],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983286,0.00037085955,0.0007934504,0.000102831116,0.00005509419,0.00034916608],"domain_scores_gemma":[0.99837685,0.00042037267,0.0007355014,0.00016736254,0.00026371464,0.000036205667],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0027290676,0.000126025,0.00041396596,0.00032296876,0.00012522108,0.000010100886,0.000267735,0.00040260315,0.0006152776],"category_scores_gemma":[0.00029471266,0.00010096621,0.00017926717,0.00015007461,0.00015353254,0.00017979169,0.000049107675,0.0005796142,0.0005824339],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036532208,0.00017917565,0.00037246005,0.000012967247,0.00019437564,0.0002433968,0.0006186304,0.000004097751,0.6273741,0.0003459154,0.01007822,0.3569234],"study_design_scores_gemma":[0.0006240978,0.0011169666,0.012003491,0.000031752083,0.00008038521,0.0034555737,0.0004011106,7.0875416e-7,0.337066,0.00034054441,0.6447719,0.00010749743],"about_ca_topic_score_codex":0.0000076986635,"about_ca_topic_score_gemma":0.000013713228,"teacher_disagreement_score":0.6346936,"about_ca_system_score_codex":0.00019118046,"about_ca_system_score_gemma":0.00027222882,"threshold_uncertainty_score":0.7486204},"labels":[],"label_agreement":null},{"id":"W2522253433","doi":"10.1371/journal.ppat.1005807","title":"Heptose Sounds the Alarm: Innate Sensing of a Bacterial Sugar Stimulates Immunity","year":2016,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Immunity; ALARM; Microbiology; Biology; Chemistry; Immunology; Immune system; Engineering","score_opus":0.015861869415587194,"score_gpt":0.2218219285653549,"score_spread":0.2059600591497677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2522253433","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99817044,0.00042812552,0.00013118684,0.00037695898,0.00035236884,0.00017648347,0.00004652822,0.00004799562,0.0002698929],"genre_scores_gemma":[0.9988607,0.00010290689,0.000045272627,0.00003751525,0.000044632754,0.0000038521807,0.000051683164,0.000016212121,0.00083720684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986888,0.0005358491,0.00032559503,0.00014222309,0.00003971248,0.00026781534],"domain_scores_gemma":[0.9988559,0.00041286892,0.0001673751,0.0004158224,0.00013734949,0.000010707037],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00039570386,0.00014112258,0.00022615338,0.00007533998,0.000209347,0.0000109417715,0.00017814299,0.00016720138,0.0005577463],"category_scores_gemma":[0.00035046003,0.000077783916,0.000103796854,0.00009825303,0.00023722445,0.00010073373,0.000108942426,0.00013501763,0.0003709236],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038959805,0.0000503554,0.00044364063,0.000008967785,0.00016553969,0.000002718347,0.0009370621,9.666534e-7,0.9900853,0.00011559677,0.00015177032,0.007648466],"study_design_scores_gemma":[0.0009705228,0.00012783927,0.0055428003,0.00007045142,0.00007204289,0.000028090228,0.0001722047,0.000011924958,0.98660237,0.00019351848,0.006076452,0.00013178881],"about_ca_topic_score_codex":0.000025471303,"about_ca_topic_score_gemma":0.0000054371794,"teacher_disagreement_score":0.0075166775,"about_ca_system_score_codex":0.00002543823,"about_ca_system_score_gemma":0.000057850728,"threshold_uncertainty_score":0.6106931},"labels":[],"label_agreement":null},{"id":"W2526967329","doi":"10.1038/ni.3564","title":"CCL19-CCR7–dependent reverse transendothelial migration of myeloid cells clears Chlamydia muridarum from the arterial intima","year":2016,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network","funders":"","keywords":"CCL19; Chemokine; Myeloid; C-C chemokine receptor type 7; Chemokine receptor; Immunology; Monocyte; Biology; Cell biology; Medicine; Inflammation","score_opus":0.0035797384772302465,"score_gpt":0.1974134368422385,"score_spread":0.19383369836500824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2526967329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98548245,0.0038146633,0.0002696106,0.0048596114,0.0045855157,0.00036974155,0.0002075569,0.00006747306,0.00034340099],"genre_scores_gemma":[0.9967751,0.0010432403,0.00005451158,0.00037484575,0.00020861808,0.000022367962,0.00011828964,0.00002669137,0.0013763203],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978547,0.00072243856,0.0005798014,0.00035835104,0.00007723006,0.0004074972],"domain_scores_gemma":[0.99830383,0.00060426653,0.00032475826,0.0006168476,0.00013788632,0.000012424888],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00038000548,0.00026176518,0.0004064234,0.00012675837,0.0001753545,0.000013946707,0.0005024245,0.0012607017,0.0019220111],"category_scores_gemma":[0.00018215195,0.00015759011,0.00020298429,0.00012216916,0.0004824126,0.0001893118,0.00008227778,0.0007698989,0.000983213],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032519156,0.00007220307,0.00013494036,0.000005098283,0.00032972853,0.0000052727737,0.00074098655,6.5639415e-7,0.97154456,0.0004384759,0.0041628852,0.019313265],"study_design_scores_gemma":[0.0031123848,0.00019116362,0.0121045,0.000051586037,0.00007054829,0.000040732055,0.00019910416,7.0073804e-7,0.8830118,0.0002611546,0.10077533,0.00018095394],"about_ca_topic_score_codex":0.00031965045,"about_ca_topic_score_gemma":0.000120501245,"teacher_disagreement_score":0.096612446,"about_ca_system_score_codex":0.00006301818,"about_ca_system_score_gemma":0.000115937684,"threshold_uncertainty_score":0.99979466},"labels":[],"label_agreement":null},{"id":"W2528401552","doi":"10.1007/978-1-4939-6445-1_22","title":"Screening Vaccine Formulations in Fresh Human Whole Blood","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"","keywords":"Adjuvant; Human blood; Human use; Whole blood; Animal model; Computer science; Computational biology; Medicine; Biochemical engineering; Biology; Biotechnology; Immunology; Engineering; Physiology","score_opus":0.020754651406155546,"score_gpt":0.3653431810429386,"score_spread":0.34458852963678305,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2528401552","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4751113,0.001124051,0.52227,0.0005198562,0.00014133505,0.00018564987,0.0000046170185,0.00003281177,0.0006103208],"genre_scores_gemma":[0.76123846,0.000050108756,0.23704092,0.00026579146,0.000025803985,0.00009925138,0.00012591027,0.000031459575,0.0011223025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970543,0.0017825565,0.00046942124,0.00029395614,0.000014436938,0.00038536385],"domain_scores_gemma":[0.9991709,0.00035810666,0.00010511334,0.00032379924,0.000030519084,0.000011573608],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013148728,0.00015145246,0.00029971145,0.00042842864,0.00007464605,0.000004666825,0.00020757601,0.00037142445,0.00030437481],"category_scores_gemma":[0.0004659809,0.00011375171,0.000075740216,0.00023933862,0.00007752365,0.00006683991,0.00011029502,0.00021555903,0.000057413825],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060658385,0.000048205176,0.0099453,0.0000029566615,0.000042610263,0.000009596679,0.0000720765,0.000005569809,0.94384956,0.012921774,0.000023023737,0.03301869],"study_design_scores_gemma":[0.0028787174,0.0001692026,0.01961016,0.000052651816,0.000017543742,0.000025976404,0.000027370781,0.0000071393706,0.9538969,0.011984293,0.011147496,0.00018256585],"about_ca_topic_score_codex":0.00009378939,"about_ca_topic_score_gemma":0.00008965648,"teacher_disagreement_score":0.28612715,"about_ca_system_score_codex":0.000028129078,"about_ca_system_score_gemma":0.000022204074,"threshold_uncertainty_score":0.46386603},"labels":[],"label_agreement":null},{"id":"W2528496275","doi":"10.1016/j.bbrc.2016.10.007","title":"MyD88 contributes to neuroinflammatory responses induced by cerebral ischemia/reperfusion in mice","year":2016,"lang":"en","type":"article","venue":"Biochemical and Biophysical Research Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"American Stroke Association; Stroke Association; Heart and Stroke Foundation of Canada; American Heart Association","keywords":"IRF3; NFKB1; Ischemia; Receptor; IκBα; Knockout mouse; Signal transduction; Pharmacology; Inflammation; NF-κB; Chemistry; Medicine; Endocrinology; Transcription factor; Internal medicine; Biochemistry; Innate immune system","score_opus":0.04560598892434828,"score_gpt":0.3354312080770401,"score_spread":0.28982521915269177,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2528496275","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97308666,0.0015700952,0.000017308545,0.02454881,0.000037216047,0.0003720582,0.000034396195,0.00004475344,0.00028872685],"genre_scores_gemma":[0.9978297,0.0005251548,0.000056145866,0.00015406407,0.000018515046,0.0001265628,0.000060703387,0.000013810468,0.001215352],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977191,0.0009203047,0.00036932467,0.00036606292,0.00010943716,0.00051577354],"domain_scores_gemma":[0.9965594,0.002263533,0.000047425296,0.0008320664,0.00021711207,0.00008047529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008746251,0.00016014761,0.00023892618,0.00024539634,0.00032239786,0.00003579669,0.0007529972,0.00027131793,0.00004529799],"category_scores_gemma":[0.0021978903,0.0001124346,0.000058178844,0.000512831,0.000729354,0.00013024807,0.00082917826,0.0005541284,0.00043453733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00071152917,0.00020745565,0.0003318226,0.00000845066,0.000017878332,6.615567e-7,0.00007898091,4.0054857e-9,0.97992873,0.0020498137,0.009404205,0.0072604767],"study_design_scores_gemma":[0.0009355556,0.0001531207,0.004344518,0.00012308256,0.000005291503,0.0000033108524,0.00007469457,0.0000041231706,0.95621175,0.0003602113,0.037633665,0.00015069256],"about_ca_topic_score_codex":0.00012973837,"about_ca_topic_score_gemma":0.000009825764,"teacher_disagreement_score":0.028229462,"about_ca_system_score_codex":0.000102339145,"about_ca_system_score_gemma":0.0001172603,"threshold_uncertainty_score":0.5585243},"labels":[],"label_agreement":null},{"id":"W2529690880","doi":"10.1111/mmi.13544","title":"A novel glycan modifies the flagellar filament proteins of the oral bacterium <i><scp>T</scp>reponema denticola</i>","year":2016,"lang":"en","type":"article","venue":"Molecular Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases","keywords":"Treponema denticola; Glycan; Biology; Borrelia burgdorferi; Flagellin; Glycosylation; Microbiology; Treponema; Pathogen; Biochemistry; Bacteria; Gene; Genetics; Porphyromonas gingivalis; Virology; Antibody; Glycoprotein","score_opus":0.007471769010435788,"score_gpt":0.19668593620723845,"score_spread":0.18921416719680267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529690880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9915599,0.0010629449,0.0038589716,0.0015175901,0.0007220463,0.00083664415,0.000053146374,0.000038696122,0.0003500446],"genre_scores_gemma":[0.9948331,0.00004248614,0.00010954332,0.00052440504,0.000018524492,0.00008395214,0.00004699125,0.000026875383,0.004314127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978901,0.0007135009,0.0005082657,0.00033952348,0.000037407055,0.0005111788],"domain_scores_gemma":[0.9984191,0.0002753591,0.00035161062,0.0008051488,0.00013333987,0.00001545495],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004581876,0.00026672325,0.00035412083,0.00008149837,0.00023368739,0.000016799073,0.0006766799,0.00034905897,0.00011043052],"category_scores_gemma":[0.00037870463,0.00012977229,0.0002660156,0.0001724209,0.0007586393,0.00006080283,0.00037680988,0.00022474902,0.00029755713],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008049997,0.00009433019,0.00010017556,0.000016232356,0.00023959864,0.000003959982,0.00033811125,0.0000034116956,0.9962676,0.00061576016,0.0016528271,0.000587448],"study_design_scores_gemma":[0.0010975805,0.00015206655,0.0012196238,0.00005486015,0.0000637478,0.00030034827,0.00010987893,7.387885e-7,0.87019026,0.000060551272,0.1266685,0.00008183486],"about_ca_topic_score_codex":0.000071548784,"about_ca_topic_score_gemma":0.000025458201,"teacher_disagreement_score":0.12607738,"about_ca_system_score_codex":0.000054907014,"about_ca_system_score_gemma":0.000115929746,"threshold_uncertainty_score":0.529196},"labels":[],"label_agreement":null},{"id":"W2529744408","doi":"10.1016/j.biomaterials.2016.09.032","title":"Endosomal pH modulation by peptide-gold nanoparticle hybrids enables potent anti-inflammatory activity in phagocytic immune cells","year":2016,"lang":"en","type":"article","venue":"Biomaterials","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network; University of British Columbia; Child and Family Research Institute; University of Toronto; BC Children's Hospital","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Cystic Fibrosis Canada; Child and Family Research Institute; Crohn's and Colitis Foundation of Canada; Michael Smith Health Research BC","keywords":"Inflammation; Immune system; Innate immune system; Endosome; In vivo; Receptor; Signal transduction; Cell biology; Materials science; Immunology; Biology; Biochemistry","score_opus":0.008242195816294408,"score_gpt":0.21021472663307258,"score_spread":0.20197253081677818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2529744408","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971167,0.0007379323,0.00007941497,0.0002788695,0.0011128371,0.00041779765,0.000058638117,0.00012740168,0.000070420705],"genre_scores_gemma":[0.9980123,0.00013848569,0.000014197686,0.000022077249,0.00004775427,0.00005716398,0.000052802156,0.000027678,0.0016275237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978254,0.0005823016,0.0006409355,0.00035299352,0.00006662531,0.00053175265],"domain_scores_gemma":[0.9991448,0.00012267004,0.000276179,0.00038142188,0.000048932518,0.000026033014],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006665655,0.00025416518,0.00041570363,0.00016610141,0.000108359345,0.000042813852,0.00019690255,0.00023764338,0.00043068157],"category_scores_gemma":[0.00006802523,0.00019072916,0.00009216765,0.000108226195,0.00014816041,0.0005020755,0.00009741085,0.000024750103,0.0012078219],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005556809,0.00012929636,0.00046173256,0.000029609006,0.000056362205,0.0000113453425,0.00008439708,0.0000033749768,0.99086004,0.000045536846,0.0009371504,0.0068254424],"study_design_scores_gemma":[0.002378464,0.00010440735,0.024375722,0.00008809738,0.000017552375,0.000023475257,0.0000207555,0.000010080392,0.9681018,0.000039473576,0.0045813397,0.00025881125],"about_ca_topic_score_codex":0.00014304428,"about_ca_topic_score_gemma":0.0000038493536,"teacher_disagreement_score":0.023913989,"about_ca_system_score_codex":0.00014760873,"about_ca_system_score_gemma":0.00006695177,"threshold_uncertainty_score":0.99956983},"labels":[],"label_agreement":null},{"id":"W253076228","doi":"","title":"In vitro expression of tumor necrosis factor-alpha, interleukin 1beta, and interleukin 8 mRNA by bovine macrophages following exposure to Porphyromonas levii.","year":2002,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Tumor necrosis factor alpha; Lipopolysaccharide; Molecular biology; Biology; Interleukin; Cytokine; Proinflammatory cytokine; Macrophage; Interleukin 8; Immunology; In vitro; Microbiology; Inflammation; Biochemistry","score_opus":0.011128686409905771,"score_gpt":0.20481445745095547,"score_spread":0.1936857710410497,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W253076228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926116,0.005683222,0.000026831118,0.00045425398,0.00039441118,0.0005589882,0.00003685082,0.0000359906,0.00019786155],"genre_scores_gemma":[0.9946456,0.000062808955,0.000051196374,0.00023902861,0.000017674221,0.0003100265,0.00003469717,0.000024539971,0.004614432],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837035,0.00022846005,0.00054122263,0.00033206036,0.00006231428,0.0004655871],"domain_scores_gemma":[0.9993694,0.00011421424,0.00016839738,0.00027051818,0.000030989668,0.000046522247],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028154207,0.00023247155,0.00043406963,0.00026994155,0.0000709245,0.000028025397,0.00022626869,0.00016655053,0.00022697574],"category_scores_gemma":[0.00017068398,0.00020792661,0.00011766701,0.00018102558,0.00007025737,0.00031544061,0.00015312653,0.00023901914,0.00006408144],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005728147,0.00009930771,0.0010856101,0.000025681162,0.000048477228,0.000018310178,0.0011580132,2.9595424e-7,0.9508454,0.0000035712587,0.003913845,0.042228665],"study_design_scores_gemma":[0.0014202074,0.00016112716,0.032787383,0.000059035305,0.000017374596,0.000016210055,0.00012658008,0.000001930781,0.9580269,0.000014562426,0.0071667437,0.00020195983],"about_ca_topic_score_codex":0.0001553495,"about_ca_topic_score_gemma":0.000009917896,"teacher_disagreement_score":0.042026706,"about_ca_system_score_codex":0.00010137025,"about_ca_system_score_gemma":0.0000112213775,"threshold_uncertainty_score":0.8479001},"labels":[],"label_agreement":null},{"id":"W2533068958","doi":"10.5539/jmbr.v6n1p71","title":"Effect of a Mushroom (Coriolus versicolor) Based Probiotic on the Expression of Toll-like Receptors and Signal Transduction in Goat Neutrophils","year":2016,"lang":"en","type":"article","venue":"Journal of Molecular Biology Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Department of Agriculture","keywords":"Innate immune system; Biology; Trizol; Signal transduction; Gene expression; Receptor; Molecular biology; Gene; Toll-like receptor; Complementary DNA; Microbiology; Immunology; Andrology; RNA extraction; Cell biology; Biochemistry; Medicine","score_opus":0.01749927831260344,"score_gpt":0.3040329840762239,"score_spread":0.28653370576362047,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2533068958","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99644583,0.0010575353,0.00033388165,0.0015636403,0.0002376759,0.00033188402,0.00000202208,0.000002267163,0.000025273665],"genre_scores_gemma":[0.99970853,0.00017379304,0.00001989439,0.000015802118,0.000015841135,0.000007793802,0.0000028018849,0.000007622383,0.000047928617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99510837,0.003976271,0.00044006304,0.00014411568,0.000085995816,0.0002452176],"domain_scores_gemma":[0.9978132,0.001554392,0.00024973857,0.00017298755,0.00019162167,0.000018027158],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0034988485,0.00010901226,0.00033300434,0.00045159145,0.00006720291,0.0000034792795,0.00021830041,0.00026781866,0.00016183937],"category_scores_gemma":[0.0004463714,0.00005423396,0.00011801592,0.00022009063,0.0005268356,0.000055518536,0.000038952854,0.00044088307,0.000007539654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0074424683,0.00007995987,0.0007494862,0.000037487254,0.00005656839,0.000008996587,0.00010924368,0.000013252224,0.9839499,0.000093437775,0.00018946789,0.00726973],"study_design_scores_gemma":[0.0025320929,0.006924071,0.0007436688,0.00034981695,0.000018117162,0.000038296977,0.00004785481,0.0000028491686,0.98850185,0.00011162748,0.00067796203,0.00005177344],"about_ca_topic_score_codex":0.00001054617,"about_ca_topic_score_gemma":0.0000012229954,"teacher_disagreement_score":0.0072179562,"about_ca_system_score_codex":0.000059697395,"about_ca_system_score_gemma":0.00013009582,"threshold_uncertainty_score":0.22115965},"labels":[],"label_agreement":null},{"id":"W2534384987","doi":"10.1038/srep35343","title":"Disabled-2 is a negative immune regulator of lipopolysaccharide-stimulated Toll-like receptor 4 internalization and signaling","year":2016,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":31,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"School of Medicine, New York University; Chang Gung Medical Foundation; York University","keywords":"TRIF; Cell biology; TLR4; Toll-like receptor; Endocytosis; Internalization; Biology; Signal transducing adaptor protein; Signal transduction; Endocytic cycle; Gene knockdown; Clathrin; Immune system; Receptor; Innate immune system; Immunology; Biochemistry; Gene","score_opus":0.008086630405928254,"score_gpt":0.22474630279389252,"score_spread":0.21665967238796427,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2534384987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99363464,0.00069794257,0.001248075,0.00021421057,0.0037666848,0.00025693758,0.0000058103465,0.00004875716,0.0001269366],"genre_scores_gemma":[0.9865744,0.000026271577,0.00008581933,0.000015961494,0.000014575731,0.000009765681,0.00004149012,0.000012972832,0.013218745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983447,0.00013954585,0.0007440101,0.00044860347,0.00008934103,0.00023377936],"domain_scores_gemma":[0.99852425,0.00012055461,0.00058904034,0.0004848518,0.00025812385,0.000023169297],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00094395666,0.00014543458,0.00026923453,0.00020025873,0.00021642333,0.000046121433,0.000102610975,0.00015229936,0.0012929585],"category_scores_gemma":[0.00036600433,0.00010096195,0.000085164495,0.0001947448,0.000475038,0.0003318076,0.0000929555,0.00006971675,0.00008766257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016601328,0.000029660998,0.0012485264,0.000015872516,0.000086466345,0.0000056328777,0.0009373758,0.000003232177,0.99063253,0.00017810383,0.0023288764,0.004367727],"study_design_scores_gemma":[0.00045579622,0.000060397593,0.0003900235,0.00025644462,0.000029974039,0.00009821629,0.00009540893,0.000018508936,0.98625934,0.0020701946,0.010130159,0.00013551637],"about_ca_topic_score_codex":0.000055390854,"about_ca_topic_score_gemma":0.0000029108076,"teacher_disagreement_score":0.013091807,"about_ca_system_score_codex":0.00004181368,"about_ca_system_score_gemma":0.00008477521,"threshold_uncertainty_score":0.99962},"labels":[],"label_agreement":null},{"id":"W2537814831","doi":"10.1182/blood.v108.11.1093.1093","title":"Lipopolysaccharide Binds Platelet Toll-Like Receptor 4 and Mediates the Activation of Phagocytes in the Reticuloendothelial System (RES): A Novel Mechanism of Host Immunity.","year":2006,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"","keywords":"TLR4; Innate immune system; Biology; Lipopolysaccharide; Phagocytosis; Cell biology; Toll-like receptor; Platelet; Platelet activation; Receptor; Immune system; Tumor necrosis factor alpha; Phagocyte; Immunology; Biochemistry","score_opus":0.006343975100569715,"score_gpt":0.1947064103643068,"score_spread":0.18836243526373708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2537814831","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.998046,0.0010074244,0.000057357312,0.00019256462,0.00015953774,0.00033004946,0.000025973699,0.00001654336,0.00016453966],"genre_scores_gemma":[0.99966854,0.00007746029,0.000031884792,0.000019485995,0.000032572574,0.00003441379,0.000053749845,0.000009119735,0.00007275435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99890363,0.00031572502,0.0004418718,0.00011476509,0.00006211736,0.00016189474],"domain_scores_gemma":[0.998896,0.0005001724,0.0002905187,0.0002514424,0.000057856887,0.0000040159975],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006531622,0.0001212475,0.00023503067,0.000116319155,0.00011345805,0.000010026732,0.00022777074,0.00015886727,0.000022331074],"category_scores_gemma":[0.00009584532,0.000072638744,0.00005219098,0.00012914179,0.00014364022,0.00008594752,0.000049015554,0.000191587,0.00000807954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002550055,0.00020229732,0.00017741302,0.000039094928,0.000072825285,5.323842e-7,0.0016266395,0.0000015931435,0.9864547,0.010891971,0.000035888028,0.00024201021],"study_design_scores_gemma":[0.0022740324,0.00016846886,0.0018580034,0.00009468576,0.00005024753,0.000044497177,0.003033502,0.000012060475,0.9920343,0.000062192885,0.00029211747,0.000075897115],"about_ca_topic_score_codex":0.0007062408,"about_ca_topic_score_gemma":0.000033687837,"teacher_disagreement_score":0.010829778,"about_ca_system_score_codex":0.00001198902,"about_ca_system_score_gemma":0.000039890354,"threshold_uncertainty_score":0.2962122},"labels":[],"label_agreement":null},{"id":"W2547219477","doi":"10.1007/978-1-4939-6581-6_20","title":"Bacterial Binding, Phagocytosis, and Killing: Measurements Using Colony Forming Units","year":2016,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre; McMaster University","funders":"","keywords":"Phagocytosis; Opsonin; Bacterial colony; Microbiology; Colony-forming unit; Bacteria; Immunofluorescence; Phagocyte; Biology; Chemistry; Immunology; Antibody; Genetics","score_opus":0.07046223113161823,"score_gpt":0.3755385636216773,"score_spread":0.30507633249005905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2547219477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7288272,0.0010824414,0.26909444,0.000078803896,0.0006319388,0.00016117911,0.0000044768435,0.000021873544,0.00009769797],"genre_scores_gemma":[0.74928033,0.00032926022,0.24945563,0.00019923702,0.00006376091,0.00005745441,0.00008274115,0.000056158864,0.00047543697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99693334,0.0019856328,0.00036650035,0.00030267634,0.000020612662,0.00039124122],"domain_scores_gemma":[0.99929965,0.0002672268,0.00014568293,0.00019805119,0.0000717175,0.00001766424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016776555,0.00017459011,0.00030840113,0.00026586762,0.000107462714,0.000008871214,0.00014526516,0.00037874267,0.0001119087],"category_scores_gemma":[0.00059776416,0.00012924179,0.00004077843,0.000191378,0.00019530123,0.000075264375,0.00011945265,0.00013222975,0.000021181828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019973428,0.000015200723,0.0026022065,0.000006000193,0.00007267713,0.0000034134252,0.00008977431,4.6943026e-7,0.95724195,0.0004638355,0.000007313785,0.039297447],"study_design_scores_gemma":[0.0015957073,0.00014282807,0.00029300372,0.000059923943,0.000028041659,0.000052604668,0.000040113155,0.000006965695,0.98446494,0.0004121103,0.012726357,0.00017739831],"about_ca_topic_score_codex":0.000040410618,"about_ca_topic_score_gemma":0.0000053451395,"teacher_disagreement_score":0.03912005,"about_ca_system_score_codex":0.000077472534,"about_ca_system_score_gemma":0.00007165806,"threshold_uncertainty_score":0.5270327},"labels":[],"label_agreement":null},{"id":"W2548273177","doi":"10.1016/j.yhbeh.2016.10.022","title":"Local glucocorticoid production in lymphoid organs of mice and birds: Functions in lymphocyte development","year":2016,"lang":"en","type":"review","venue":"Hormones and Behavior","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Immune system; Biology; Immunology; Lymphocyte; T-cell receptor; Acquired immune system; Lymphatic system; Glucocorticoid; Spleen; Antigen; T lymphocyte; T cell; Lymphopoiesis; Immunity; Thymocyte; Cell biology; Haematopoiesis; Stem cell","score_opus":0.018763974254641453,"score_gpt":0.26418834787483225,"score_spread":0.2454243736201908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2548273177","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.20631552,0.79280573,0.000012922363,0.000010068448,0.00025794684,0.00056613924,0.000007898339,0.000011919746,0.000011888744],"genre_scores_gemma":[0.019158343,0.97967565,0.000015080678,0.0000024523022,0.000012061263,0.00021533864,0.00008270232,0.00002190017,0.00081650016],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99856704,0.00014887957,0.0007031831,0.00032676946,0.00003157881,0.00022253545],"domain_scores_gemma":[0.99949855,0.00005793525,0.00023026367,0.00016383837,0.000036722293,0.000012719878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002344175,0.00024563432,0.00075658306,0.00040029213,0.000054391832,0.000007529563,0.00007032005,0.0003891791,0.000037900994],"category_scores_gemma":[0.000024216304,0.0001794457,0.000059894977,0.00021044874,0.00013915375,0.00010321735,0.00007182808,0.00013615325,0.00008845889],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007232039,0.0001210954,0.00042155862,0.0010542198,0.00003074351,0.000004555666,0.00017583236,6.4689665e-8,0.01183085,0.0000061662186,0.000013717386,0.9862689],"study_design_scores_gemma":[0.002100038,0.00020437784,0.019488117,0.007900494,0.0005710526,0.0008886938,0.0004191803,2.621388e-7,0.020035343,0.000002777074,0.9477658,0.0006238533],"about_ca_topic_score_codex":0.00010259155,"about_ca_topic_score_gemma":0.00007697629,"teacher_disagreement_score":0.985645,"about_ca_system_score_codex":0.00017267089,"about_ca_system_score_gemma":0.00033224703,"threshold_uncertainty_score":0.73175836},"labels":[],"label_agreement":null},{"id":"W2549312266","doi":"10.2147/ott.s109650","title":"Effect of smoking on the genetic makeup of toll-like receptors 2 and 6","year":2016,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"TLR2; Single-nucleotide polymorphism; Genotype; SNP; Medicine; Population; Innate immune system; Cotinine; Immunology; Saliva; Receptor; Nicotine; Internal medicine; Biology; Gene; Genetics; Environmental health","score_opus":0.006602049319220464,"score_gpt":0.22510039657051953,"score_spread":0.21849834725129907,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2549312266","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98956203,0.009406172,0.000010235386,0.00031947953,0.0002545062,0.00014432802,0.0000020861874,0.0000061193978,0.0002950676],"genre_scores_gemma":[0.9936313,0.005709133,0.000005526953,0.000051317493,0.000010562765,0.0000069505777,0.0000015514167,0.000006220092,0.00057743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99938077,0.00026011743,0.00014556047,0.00009356476,0.000021011221,0.00009900567],"domain_scores_gemma":[0.9992998,0.0004598583,0.000090067486,0.00012732732,0.000017252418,0.000005691173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003361523,0.00008391961,0.00016556043,0.000037870945,0.00006243452,0.0000026309906,0.000053515734,0.00007860862,0.00021229994],"category_scores_gemma":[0.000025753607,0.000036648824,0.000035332065,0.000027969627,0.00015354439,0.00002415203,0.000014978714,0.00004713912,0.0000063641323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009457512,0.000015807966,0.005605877,0.000009751022,0.00009688239,3.2576946e-7,0.00027459787,1.0148485e-7,0.68057245,0.0004265438,0.00033165928,0.31172025],"study_design_scores_gemma":[0.0016593259,0.0017364143,0.01962687,0.000077296165,0.000011818746,0.000008651721,0.00002222629,5.805959e-7,0.90427655,0.00014284963,0.07237029,0.00006715429],"about_ca_topic_score_codex":0.000014792251,"about_ca_topic_score_gemma":8.1415186e-7,"teacher_disagreement_score":0.3116531,"about_ca_system_score_codex":0.0000043472096,"about_ca_system_score_gemma":0.000008177278,"threshold_uncertainty_score":0.23245354},"labels":[],"label_agreement":null},{"id":"W2551648381","doi":"10.4049/jimmunol.1601024","title":"IL-17–Producing Innate and Pathogen-Specific Tissue Resident Memory γδ T Cells Expand in the Lungs of <i>Bordetella pertussis</i>–Infected Mice","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"","keywords":"Bordetella pertussis; Innate immune system; Pathogen; Immunology; Microbiology; Biology; Whooping cough; Medicine; Bacteria; Immune system; Vaccination","score_opus":0.007875546339675231,"score_gpt":0.21665326938244167,"score_spread":0.20877772304276643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2551648381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96153575,0.034921028,0.00009350449,0.0024712388,0.0005695484,0.00021847294,0.000006350004,0.000007488798,0.00017664373],"genre_scores_gemma":[0.9830337,0.015843727,0.00002361375,0.000115751034,0.000054413915,0.0000036684714,0.0000025395857,0.000015035389,0.00090753706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99673283,0.0018604525,0.00085777126,0.0001514091,0.0000720353,0.00032548283],"domain_scores_gemma":[0.99737716,0.001239138,0.0007293848,0.00043674096,0.0002067941,0.000010760605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0025359432,0.00018910797,0.00043150352,0.00027615434,0.00015483066,0.000011489091,0.0005225305,0.00022372552,0.00018692129],"category_scores_gemma":[0.00023988039,0.000089542074,0.000078073484,0.00020016146,0.00051427964,0.00017336999,0.000117213516,0.00046968882,0.000044405693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015816246,0.000052008625,0.00009733186,0.000010127378,0.00014739724,0.000015847787,0.008144153,0.000003972635,0.9739454,0.000059813705,0.0015424129,0.014399924],"study_design_scores_gemma":[0.0019383386,0.0006032428,0.01925254,0.00015803886,0.000062488805,0.0012255285,0.002193531,2.8547288e-7,0.9442829,0.00014403989,0.030015389,0.0001237186],"about_ca_topic_score_codex":0.00007455465,"about_ca_topic_score_gemma":0.000018894176,"teacher_disagreement_score":0.029662525,"about_ca_system_score_codex":0.000045465662,"about_ca_system_score_gemma":0.00008955264,"threshold_uncertainty_score":0.365142},"labels":[],"label_agreement":null},{"id":"W2552852246","doi":"10.1136/bmjopen-2016-012908","title":"Polymyxin B-immobilised haemoperfusion and mortality in critically ill patients with sepsis/septic shock: a protocol for a systematic review and meta-analysis","year":2016,"lang":"en","type":"review","venue":"BMJ Open","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Japan Society for the Promotion of Science; Ministry of Education, Science and Technology; McGill University; Eli Lilly and Company; Ministry of Health, Labour and Welfare; McGill University Health Centre; Pfizer","keywords":"Medicine; Septic shock; Cochrane Library; Sepsis; Intensive care medicine; Adverse effect; Meta-analysis; Internal medicine","score_opus":0.11041851238264418,"score_gpt":0.4390656060051729,"score_spread":0.32864709362252875,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2552852246","genre_codex":"review","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000065574854,0.5349741,0.000026324944,0.000113057074,0.000006979776,0.46469167,0.000103294435,0.000009253999,0.0000687518],"genre_scores_gemma":[0.0000040149325,0.16432779,0.00007953086,0.00052938133,0.000003535265,0.8332085,0.00024765104,0.000037615817,0.0015619725],"study_design_codex":"systematic_review","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9950011,0.0021919464,0.0017167921,0.00065757835,0.00008817771,0.00034440204],"domain_scores_gemma":[0.9970758,0.0006118847,0.0008715718,0.000907154,0.0004963574,0.000037247974],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026170753,0.00053351617,0.0070691872,0.00028281123,0.00012598597,0.00009442251,0.00047198925,0.00036875563,0.0005312773],"category_scores_gemma":[0.0013607382,0.00026409092,0.00070757087,0.0003454839,0.00013041128,0.00026253314,0.00040768043,0.0001858286,0.000047040223],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029561023,0.00016982039,0.000030018182,0.9447045,0.05069678,0.0000033111498,0.000044085067,2.5824244e-8,0.0000033242604,0.0000629113,0.00022008127,0.0037695568],"study_design_scores_gemma":[0.003441051,0.00064289843,0.00013937036,0.26387855,0.670001,0.000036141806,0.000022360056,0.0000013876892,0.000008645973,0.000025201185,0.060869403,0.00093402993],"about_ca_topic_score_codex":0.000054882632,"about_ca_topic_score_gemma":0.000071921946,"teacher_disagreement_score":0.6808259,"about_ca_system_score_codex":0.00006384954,"about_ca_system_score_gemma":0.00026067757,"threshold_uncertainty_score":0.9999811},"labels":[],"label_agreement":null},{"id":"W2554235706","doi":"10.1183/13993003.congress-2015.oa3491","title":"LSC Abstract – Toll-like receptor 10: Expression and functional role in LPS mediated inflammation","year":2015,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cell biology; TLR4; Innate immune system; Biology; Pattern recognition receptor; Toll-like receptor; Chemotaxis; Inflammation; Receptor; Immunology; Immune system; Signal transduction; Biochemistry","score_opus":0.0153303319918528,"score_gpt":0.2198453264279968,"score_spread":0.20451499443614402,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2554235706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876386,0.0011145612,0.000057254805,0.00035516603,0.0004272469,0.00017157504,0.0000027855745,0.0000730403,0.010159798],"genre_scores_gemma":[0.9906636,0.00005458476,0.000060990107,0.000046735033,0.000042943506,0.000026522002,0.00052819273,0.000008966262,0.00856746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99915403,0.0001305924,0.00030645286,0.00017876692,0.00004872637,0.000181423],"domain_scores_gemma":[0.99954695,0.00012552473,0.000090553585,0.00013111031,0.000080423626,0.00002541628],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004612295,0.0001163204,0.00014411271,0.00016238655,0.00006314398,0.00001668985,0.00005405735,0.0002536898,0.0025818772],"category_scores_gemma":[0.00020231491,0.000096639196,0.000024060248,0.00008960388,0.00005070946,0.00035226493,0.000045062166,0.0001534043,0.0021039937],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008163849,0.00003014411,0.000843768,0.000005112889,0.000014852481,0.0000010544064,0.00043580754,0.000020487292,0.97581375,0.000110773624,0.013885258,0.008022606],"study_design_scores_gemma":[0.0035887666,0.00015128404,0.06021046,0.000058197984,0.000008562043,0.000030575386,0.0011262008,0.00009193366,0.7158741,0.00020354036,0.21840458,0.00025180783],"about_ca_topic_score_codex":0.000054888027,"about_ca_topic_score_gemma":0.00003612184,"teacher_disagreement_score":0.25993967,"about_ca_system_score_codex":0.000047096397,"about_ca_system_score_gemma":0.000074700605,"threshold_uncertainty_score":0.99867296},"labels":[],"label_agreement":null},{"id":"W2555913190","doi":"10.3389/fimmu.2016.00533","title":"Peptide IDR-1002 Inhibits NF-κB Nuclear Translocation by Inhibition of IκBα Degradation and Activates p38/ERK1/2–MSK1-Dependent CREB Phosphorylation in Macrophages Stimulated with Lipopolysaccharide","year":2016,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"CREB; Phosphorylation; Cell biology; CREB-binding protein; p38 mitogen-activated protein kinases; Inflammation; Signal transduction; Innate immune system; Transcription factor; NF-κB; Cyclic AMP Response Element-Binding Protein; Chemistry; Lipopolysaccharide; Coactivator; Biology; Immune system; Protein kinase A; Biochemistry; Immunology","score_opus":0.003990597474235667,"score_gpt":0.18747718406021985,"score_spread":0.18348658658598418,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2555913190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9885022,0.00564252,0.004368191,0.00049977464,0.00033616897,0.0005130873,0.000023305438,0.000057997266,0.000056752306],"genre_scores_gemma":[0.9966863,0.0021340114,0.00040202052,0.000028685292,0.0000078141165,0.000040089813,0.000178356,0.00003529202,0.0004874286],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979744,0.0004291968,0.0007012206,0.00042691574,0.00007487088,0.0003934151],"domain_scores_gemma":[0.99911135,0.0001335959,0.00036620002,0.0002662813,0.00010596826,0.000016625409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004006072,0.0002741867,0.00047297575,0.00059895107,0.00010617502,0.000015986729,0.00013481973,0.00050382846,0.00010459592],"category_scores_gemma":[0.00009873114,0.00022426805,0.000043758668,0.00027648517,0.000385292,0.0006662761,0.000043563276,0.00031385035,0.000028320314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030204337,0.00013665024,0.0057258904,0.000022780841,0.00012756845,0.0000038640837,0.0010295555,0.000025981588,0.9427764,0.0003002176,0.0003053048,0.04652537],"study_design_scores_gemma":[0.005271986,0.00046409588,0.011810964,0.00031782978,0.000031231233,0.000032517062,0.00083075534,0.0000650878,0.98005074,0.00031919486,0.00053179206,0.00027381178],"about_ca_topic_score_codex":0.00046548722,"about_ca_topic_score_gemma":0.000096449156,"teacher_disagreement_score":0.046251558,"about_ca_system_score_codex":0.00021801483,"about_ca_system_score_gemma":0.00006863804,"threshold_uncertainty_score":0.91453856},"labels":[],"label_agreement":null},{"id":"W2557385370","doi":"10.1182/blood.v104.11.1887.1887","title":"Stimulation of Precursor-B Acute Lymphoblastic Leukemia Cells with Toll-Like Receptor Ligands Alters Their Immunogenicity.","year":2004,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Immune system; TLR2; Immunology; Immunogenicity; Toll-like receptor; Antigen; TLR3; Biology; B cell; T cell; TLR9; Cancer research; TLR4; Innate immune system; Antibody; DNA methylation","score_opus":0.005009751337599002,"score_gpt":0.19402109599224848,"score_spread":0.18901134465464947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2557385370","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99765015,0.00088114134,0.00053514517,0.00003917302,0.00031644097,0.0002923691,0.000024615685,0.00006342592,0.00019751792],"genre_scores_gemma":[0.9987676,0.00015890591,0.00020567556,0.000035860794,0.000021825781,0.000019499452,0.00015550978,0.000022817892,0.00061230984],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990269,0.000070006754,0.00035430613,0.00022171068,0.00004962664,0.00027746437],"domain_scores_gemma":[0.99926335,0.0000889081,0.00022179732,0.00031734948,0.00009175169,0.000016823475],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014358362,0.00020215819,0.0002868151,0.000120791476,0.00011815942,0.000012300588,0.0001860254,0.000212453,0.00010568653],"category_scores_gemma":[0.000016170246,0.00015721566,0.000097672215,0.00016465956,0.0001359444,0.00016491521,0.000041585903,0.0001360432,0.00029269443],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001177706,0.00018886376,0.00020826973,0.00001942391,0.0006435423,0.000002876183,0.0009637637,0.0010490026,0.99502474,0.0000965211,0.00007826672,0.0005470088],"study_design_scores_gemma":[0.0068758586,0.0008198687,0.0016185803,0.00011344853,0.00024123567,0.00007500762,0.00011033631,0.0000067550736,0.9891536,0.00004161012,0.00075298187,0.00019071877],"about_ca_topic_score_codex":0.00004556628,"about_ca_topic_score_gemma":0.0000059121003,"teacher_disagreement_score":0.0058711567,"about_ca_system_score_codex":0.00008988488,"about_ca_system_score_gemma":0.0002652259,"threshold_uncertainty_score":0.64110684},"labels":[],"label_agreement":null},{"id":"W2557439120","doi":"10.1182/blood.v116.21.870.870","title":"Therapeutic Potential for Toll-Like Receptor 2 Agonists In Pediatric Acute Lymphoblastic Leukemia (pre-B ALL): Induction of Apoptosis and Anti-ALL Immunogenicity","year":2010,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"","keywords":"Immunology; Medicine; Leukemia; Minimal residual disease; Immunogenicity; Immune system; TLR9; Transplantation; Cancer research; Biology; Internal medicine","score_opus":0.006792298349318342,"score_gpt":0.22731221588079678,"score_spread":0.22051991753147843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2557439120","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969917,0.00127576,0.000121097946,0.000070588925,0.0010714034,0.00040031743,0.000022008293,0.000030383942,0.000016736361],"genre_scores_gemma":[0.99845654,0.00095071143,0.00015096551,0.00003816099,0.000070036156,0.000047315334,0.0001379188,0.000018052377,0.0001303091],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989112,0.00011657793,0.0003998804,0.00024591558,0.0000382401,0.0002882025],"domain_scores_gemma":[0.9993904,0.00010024727,0.00020017891,0.00022530237,0.00006849874,0.000015356809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00028944324,0.00016802203,0.0002860476,0.00019532154,0.00009390636,0.000015902395,0.00015223354,0.00040154677,0.000054995504],"category_scores_gemma":[0.000047157253,0.00015850388,0.000098618184,0.000121245495,0.000098931494,0.0001450033,0.00005406815,0.00024284504,0.00002366674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006074561,0.00019504495,0.0012278834,0.000038362705,0.00032874075,5.4251484e-7,0.00031418694,0.0000037665332,0.9949513,0.000068385125,0.00007578642,0.0021885345],"study_design_scores_gemma":[0.005489365,0.00029241855,0.043252613,0.0000110600595,0.000575378,0.000088413304,0.000043316948,0.000015423102,0.94878286,0.00007250313,0.0011722606,0.000204366],"about_ca_topic_score_codex":0.00008846521,"about_ca_topic_score_gemma":0.000013118253,"teacher_disagreement_score":0.046168428,"about_ca_system_score_codex":0.000028780152,"about_ca_system_score_gemma":0.00012564122,"threshold_uncertainty_score":0.6463601},"labels":[],"label_agreement":null},{"id":"W2557987245","doi":"10.1139/cjpp-2016-0303","title":"Chloroquine attenuates lipopolysaccharide-induced inflammatory responses through upregulation of USP25","year":2016,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"IRF3; TLR4; Downregulation and upregulation; TRIF; Cell biology; Signal transduction; Tumor necrosis factor alpha; Gene silencing; Lipopolysaccharide; Proinflammatory cytokine; Interferon regulatory factors; Chemistry; IκB kinase; NF-κB; Biology; Toll-like receptor; Receptor; Immunology; Inflammation; Biochemistry; Innate immune system","score_opus":0.016669957240469803,"score_gpt":0.2605634360440415,"score_spread":0.24389347880357168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2557987245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944867,0.0021461768,0.000034998735,0.001651548,0.0014807967,0.00011481837,0.000016476706,0.000007079963,0.000061397055],"genre_scores_gemma":[0.99900335,0.0002805718,0.000021964612,0.00023590712,0.00014703942,0.0000047689996,0.0000062961244,0.000011625723,0.00028847132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99833983,0.0005617885,0.0005871686,0.00015231657,0.000025557745,0.00033334666],"domain_scores_gemma":[0.99850845,0.0005156818,0.0005230144,0.00012479232,0.00025647928,0.0000715572],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00044054553,0.00015933519,0.00040859595,0.000300992,0.00015614546,0.0000032035082,0.00019906579,0.00030648356,0.0022256824],"category_scores_gemma":[0.00014896414,0.00011375397,0.00009842946,0.00007373625,0.0005454049,0.00029355008,0.000024720008,0.00022312616,0.000045705376],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011349301,0.00001577846,0.0018569464,0.000028415028,0.0002674576,0.00001363524,0.000507615,0.0000029949351,0.9908254,0.0010503891,0.0014664717,0.0028299578],"study_design_scores_gemma":[0.0017868942,0.00050831505,0.017210992,0.000052057618,0.00008895137,0.00021035093,0.00006870664,0.0000010080527,0.97003025,0.0016295437,0.008289033,0.00012389674],"about_ca_topic_score_codex":0.00029013303,"about_ca_topic_score_gemma":0.00019488051,"teacher_disagreement_score":0.020795157,"about_ca_system_score_codex":0.000050299,"about_ca_system_score_gemma":0.0006234871,"threshold_uncertainty_score":0.99868643},"labels":[],"label_agreement":null},{"id":"W2560039482","doi":"10.1182/blood.v104.11.2167.2167","title":"Revising the Genomic Structure of the Human GM-CSF Receptor Alpha (GMRα) Subunit: Characterization of a Novel Membrane-Spanning GMRα Isoform Which Contains a Previously Undescribed Exon.","year":2004,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Exon; Alternative splicing; Biology; Molecular biology; Gene isoform; Alu element; RNA splicing; Gene; Cell biology; Genetics; Human genome; RNA; Genome","score_opus":0.01335511950904263,"score_gpt":0.2211947783076706,"score_spread":0.20783965879862795,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560039482","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769616,0.0006517254,0.00018162557,0.00037464473,0.0002243683,0.00068108086,0.000045679506,0.00002964619,0.00011505862],"genre_scores_gemma":[0.9992304,0.00012867257,0.000048364946,0.00009796871,0.000046911584,0.000009949195,0.00022514226,0.00002474573,0.00018784817],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986499,0.00021459606,0.00058868626,0.00019785471,0.000067571666,0.00028138084],"domain_scores_gemma":[0.99861825,0.000066458495,0.00060305436,0.00048548792,0.00021513109,0.000011636839],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003576668,0.00019559177,0.0003396636,0.0000894639,0.00036238245,0.000022392662,0.00039657622,0.00024008926,0.0001138035],"category_scores_gemma":[0.00015014992,0.0001273219,0.00012407322,0.00028942587,0.00016633382,0.0001804833,0.00010523961,0.0003100689,0.000008938889],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000116181436,0.00013945528,0.0004639607,0.00007550523,0.00021500626,2.070894e-7,0.0037113915,0.000023301885,0.9934989,0.0014399092,0.0000055035202,0.00031068226],"study_design_scores_gemma":[0.0032144615,0.00014452645,0.035182957,0.0003483212,0.00016753495,0.00004975962,0.0003406183,0.0000026850016,0.9592781,0.000046319245,0.0010809067,0.00014379775],"about_ca_topic_score_codex":0.00013269403,"about_ca_topic_score_gemma":0.000078532015,"teacher_disagreement_score":0.034718998,"about_ca_system_score_codex":0.000053263717,"about_ca_system_score_gemma":0.00018347049,"threshold_uncertainty_score":0.5192036},"labels":[],"label_agreement":null},{"id":"W2560189532","doi":"10.1182/blood.v112.11.469.469","title":"The Zinc Finger Protein Gfi1 Controls TLR4-Mediated Inflammatory Response by Directly Antagonizing NF-κB Transcription Factor","year":2008,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Montreal Clinical Research Institute","funders":"","keywords":"Transcription factor; Cell biology; TLR4; Biology; Signal transduction; NF-κB; Innate immune system; NFKB1; Tumor necrosis factor alpha; Receptor; Immune system; Immunology; Gene; Biochemistry","score_opus":0.009527238851922358,"score_gpt":0.20076060450066266,"score_spread":0.1912333656487403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2560189532","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899024,0.0076895114,0.000046875164,0.00083961204,0.0003188511,0.00074746343,0.00004936122,0.00020225045,0.00020367588],"genre_scores_gemma":[0.9942265,0.0003952587,0.000014522429,0.00012084687,0.00004145308,0.00015664441,0.00013010587,0.000032401127,0.004882259],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748343,0.0011161022,0.000523121,0.0002808897,0.00008705692,0.0005094248],"domain_scores_gemma":[0.9986905,0.0005981371,0.00020683474,0.0003687152,0.00010495905,0.000030850813],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071209826,0.0002546987,0.00028759113,0.00010257411,0.0008779087,0.000036361307,0.000259703,0.00035319434,0.00013548917],"category_scores_gemma":[0.0005777627,0.00019139356,0.00014164064,0.00014209455,0.000277294,0.00024120489,0.000030441919,0.00040374757,0.0006107638],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031213223,0.00014251209,0.0005153685,0.000008395794,0.00020570504,0.000020810985,0.0010124847,3.1312223e-7,0.99251574,0.00003537881,0.0014752819,0.00094669266],"study_design_scores_gemma":[0.0037137386,0.00021363217,0.007399623,0.00003511992,0.000029997174,0.00008679778,0.00008812979,0.0000024568703,0.8204246,0.0000090809,0.16778293,0.00021385204],"about_ca_topic_score_codex":0.00003229663,"about_ca_topic_score_gemma":0.000009638905,"teacher_disagreement_score":0.1720911,"about_ca_system_score_codex":0.000043759483,"about_ca_system_score_gemma":0.00017170224,"threshold_uncertainty_score":0.7850337},"labels":[],"label_agreement":null},{"id":"W2562421369","doi":"10.2147/ott.s106024","title":"Association between &lt;em&gt;TLR-9&lt;/em&gt; polymorphisms and colon cancer susceptibility in Saudi Arabian female patients","year":2016,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Medicine; Colorectal cancer; Internal medicine; Association (psychology); Cancer; Oncology; Psychology","score_opus":0.011239788867495772,"score_gpt":0.2406227111290439,"score_spread":0.22938292226154813,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2562421369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98993224,0.008119533,0.000010397651,0.0009322094,0.0003677125,0.00037991055,0.000059210008,0.000032927474,0.00016586506],"genre_scores_gemma":[0.9905828,0.0066503636,0.0000131923225,0.0001422195,0.00006798727,0.000038075323,0.000079856836,0.000018164783,0.0024073415],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99843794,0.00035348994,0.00037928412,0.00035462805,0.00007518816,0.0003994501],"domain_scores_gemma":[0.99919564,0.00022815652,0.0002460573,0.00019433245,0.00010177914,0.000034026547],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062316883,0.00021275443,0.0003752067,0.00011320792,0.00019599493,0.000027423283,0.0000968396,0.00035641604,0.00043224875],"category_scores_gemma":[0.00008129336,0.00015170769,0.00005867415,0.00010278115,0.00009200393,0.00023361463,0.000041777494,0.00014969808,0.00005584235],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046893655,0.000096845615,0.6035377,0.000006406476,0.00014115567,8.080382e-7,0.001166534,1.2752855e-7,0.27549604,0.00004379983,0.0005402884,0.11850142],"study_design_scores_gemma":[0.0042424053,0.00042623965,0.89695704,0.00006312882,0.000021007912,9.1515517e-7,0.000039788643,9.303262e-7,0.04156181,0.00025885017,0.05620079,0.00022706835],"about_ca_topic_score_codex":0.00019673088,"about_ca_topic_score_gemma":0.0008714096,"teacher_disagreement_score":0.29341942,"about_ca_system_score_codex":0.00019411714,"about_ca_system_score_gemma":0.00005561035,"threshold_uncertainty_score":0.618646},"labels":[],"label_agreement":null},{"id":"W2565686091","doi":"10.1016/s1525-0016(16)33991-0","title":"382. Osteopetrosis: An Unusual Presentation of a Rare Disease as a Candidate for Gene Therapy","year":2015,"lang":"en","type":"article","venue":"Molecular Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Hospital for Sick Children","funders":"","keywords":"Osteopetrosis; TCIRG1; Medicine; Bone resorption; Osteoclast; Loss function; Pathology; Internal medicine; Pediatrics; Immunology; Phenotype; Genetics; Biology; Gene","score_opus":0.023622688052913742,"score_gpt":0.2912765444210489,"score_spread":0.26765385636813516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2565686091","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98602736,0.010758059,0.0018981531,0.0002830448,0.00019152355,0.0006921509,0.00003418521,0.000038456747,0.00007706791],"genre_scores_gemma":[0.99763346,0.00038444318,0.000114380506,0.00035760558,0.000023562925,0.00017823577,0.00076691096,0.000026688473,0.0005147315],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99897224,0.00033357364,0.00023276219,0.00020132301,0.000057863555,0.00020226663],"domain_scores_gemma":[0.9992932,0.000028923962,0.00012487872,0.0003239026,0.00018541605,0.00004367589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002462314,0.00014262664,0.00018565306,0.000102601414,0.000069255184,0.00001757081,0.00016940075,0.00010661167,0.000052187745],"category_scores_gemma":[0.00004940006,0.00012150425,0.00010294687,0.00009971447,0.0000666976,0.00014760546,0.000014718236,0.000061735846,0.00004172577],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007766176,0.00015369122,0.0002501583,0.0000058194973,0.00017099529,0.0000054454285,0.001562525,0.000036528825,0.97245055,0.00036623524,0.00024308109,0.016988806],"study_design_scores_gemma":[0.005613079,0.0012094473,0.0015957702,0.000011126022,0.0000184291,0.000007778126,0.00028967383,0.000027903427,0.96971774,0.00068665354,0.020676572,0.00014584417],"about_ca_topic_score_codex":0.00013415219,"about_ca_topic_score_gemma":0.0000025328713,"teacher_disagreement_score":0.020433491,"about_ca_system_score_codex":0.000022764107,"about_ca_system_score_gemma":0.00017959523,"threshold_uncertainty_score":0.49547994},"labels":[],"label_agreement":null},{"id":"W2568285820","doi":"10.1371/journal.pone.0169154","title":"Characterization of Innate Responses Induced by PLGA Encapsulated- and Soluble TLR Ligands In Vitro and In Vivo in Chickens","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":38,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Agriculture and Agri-Food Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Poultry Research Council","keywords":"Innate immune system; Lipopolysaccharide; In vivo; Cytokine; TLR4; Adjuvant; Toll-like receptor; In vitro; PLGA; Splenocyte; Chemistry; Immune system; Immunology; Biology; Pharmacology; Biochemistry","score_opus":0.022887488421451767,"score_gpt":0.2267714994272292,"score_spread":0.20388401100577744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2568285820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99900025,0.0003138424,4.3144456e-7,0.00034157292,0.000036091005,0.00021245278,0.000013669086,0.000008589867,0.000073071664],"genre_scores_gemma":[0.998915,0.00055337907,0.000007248356,0.000023093678,0.0000042905212,0.00001622313,0.00005378712,0.000008033133,0.00041892222],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99920976,0.00012807033,0.00030328822,0.00015962805,0.000027600367,0.00017167884],"domain_scores_gemma":[0.9995516,0.00006009828,0.00016729828,0.00018531518,0.000026957241,0.000008707958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036628573,0.00009547652,0.0002729219,0.000258479,0.00006934164,0.000018823475,0.00008755067,0.00021731902,0.000017473443],"category_scores_gemma":[0.00025001974,0.00009789416,0.00000957246,0.000071903225,0.000091963506,0.00025864452,0.00007357715,0.0001917368,0.0000043338537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017896,0.00023658358,0.017863618,0.00003480004,0.000027925353,0.0000025074194,0.0011538774,3.1377215e-8,0.9783771,0.000012617491,0.000002124341,0.0004992225],"study_design_scores_gemma":[0.0012788606,0.00006440679,0.29319477,0.00014380732,0.0000066896528,0.000001611258,0.00002924428,0.000024005258,0.70514643,0.000023196959,0.000018056428,0.00006894874],"about_ca_topic_score_codex":0.0002486136,"about_ca_topic_score_gemma":0.00008047714,"teacher_disagreement_score":0.27533114,"about_ca_system_score_codex":0.000018633309,"about_ca_system_score_gemma":0.000031015905,"threshold_uncertainty_score":0.3992008},"labels":[],"label_agreement":null},{"id":"W2578600399","doi":"","title":"Rosiglitazone prevents stretch-induced monocytes recruitment by inhibiting the NFkB-MCP1 pathway in human mesangial cells.","year":2003,"lang":"en","type":"article","venue":"Research Portal (King's College London)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Women's Health Research Institute","funders":"","keywords":"Rosiglitazone; Mesangial cell; Cell biology; Cancer research; Macrophage; Chemistry; Monocyte; Internal medicine; Medicine; Biology; Receptor; In vitro; Kidney; Biochemistry","score_opus":0.06377815008855285,"score_gpt":0.3334916012336715,"score_spread":0.26971345114511863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2578600399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9864424,0.0028750338,0.000005228534,0.00029295948,0.00035390578,0.0022429745,0.00005942604,0.00006255772,0.007665546],"genre_scores_gemma":[0.9918028,0.00014975734,0.000020956366,0.000049018698,0.00005147139,0.00053968135,0.00018126429,0.000048672136,0.0071563525],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99415445,0.0027612317,0.00086244923,0.00059912255,0.00034533284,0.0012774124],"domain_scores_gemma":[0.9983171,0.0006369803,0.00023538216,0.00054986594,0.00019383854,0.00006680759],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.004402281,0.00033868494,0.00045074226,0.0004264871,0.00094849657,0.0000847135,0.0005132545,0.000427616,0.0009879209],"category_scores_gemma":[0.0004977694,0.00027454618,0.00017382644,0.0008184885,0.0002843412,0.0003116316,0.00023358119,0.0013273836,0.00026104256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002516882,0.0003352096,0.00047723402,0.000032480024,0.00011525828,0.00010417977,0.0008707931,0.0000044224316,0.9847091,0.0047782483,0.005302689,0.0030187252],"study_design_scores_gemma":[0.00243003,0.00046998347,0.00045519968,0.0001692245,0.000010522003,0.000041809213,0.0024297512,0.000011235394,0.96246475,0.0004519344,0.030768625,0.00029693247],"about_ca_topic_score_codex":0.0005511143,"about_ca_topic_score_gemma":0.00028832004,"teacher_disagreement_score":0.025465937,"about_ca_system_score_codex":0.0002584198,"about_ca_system_score_gemma":0.00040515253,"threshold_uncertainty_score":0.9999707},"labels":[],"label_agreement":null},{"id":"W2586120920","doi":"10.2147/ott.s111971","title":"Two SNPs in the promoter region of Toll-like receptor 4 gene are not associated with smoking in Saudi Arabia","year":2017,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Single-nucleotide polymorphism; Genotype; TLR4; Saliva; Gene; SNP; Polymerase chain reaction; Biology; Polymorphism (computer science); Toll-like receptor; Population; Genetics; Immunology; Receptor; Medicine; Innate immune system; Internal medicine; Environmental health","score_opus":0.023291453695013554,"score_gpt":0.25611847112623537,"score_spread":0.2328270174312218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586120920","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960941,0.0020759238,0.000005788968,0.0010851873,0.00013884883,0.00025219264,0.0000033549686,0.0000074006957,0.00033717215],"genre_scores_gemma":[0.9981055,0.0013033448,0.00001401535,0.0001808112,0.00001598473,0.000019660014,0.000026006775,0.000009146316,0.0003255227],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991484,0.00026883793,0.00020773849,0.0001530756,0.000036367124,0.00018554566],"domain_scores_gemma":[0.9993109,0.00007554017,0.00029449118,0.0002765326,0.00003706471,0.0000054803695],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005396464,0.0001139778,0.00023322624,0.000066214205,0.00018179273,0.000025007916,0.00017583935,0.00012755823,0.000033662032],"category_scores_gemma":[0.00004465726,0.000069163725,0.000032006083,0.000046931757,0.00012624897,0.00012596883,0.000020641328,0.00019293417,0.0000034793702],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004275914,0.00054055685,0.307983,0.000019610077,0.0003000446,0.000061550934,0.009296509,0.00000617397,0.63577336,0.0005237661,0.0006344831,0.04058502],"study_design_scores_gemma":[0.0061767804,0.00047255002,0.84053904,0.00025903797,0.000010443547,0.00003199313,0.00030814117,0.000007650163,0.13797168,0.000247923,0.013780424,0.00019433288],"about_ca_topic_score_codex":0.00023769028,"about_ca_topic_score_gemma":0.0002831363,"teacher_disagreement_score":0.532556,"about_ca_system_score_codex":0.000023422304,"about_ca_system_score_gemma":0.00002571747,"threshold_uncertainty_score":0.2820415},"labels":[],"label_agreement":null},{"id":"W2586225063","doi":"10.1007/s10495-017-1348-4","title":"Surfactant protein D delays Fas- and TRAIL-mediated extrinsic pathway of apoptosis in T cells","year":2017,"lang":"en","type":"article","venue":"APOPTOSIS","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University Health Network; Hospital for Sick Children; University of Toronto","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada","keywords":"Jurkat cells; Apoptosis; Fas ligand; Cell biology; Inhibitor of apoptosis domain; Fas receptor; Phosphatidylserine; Intrinsic apoptosis; Caspase; Biology; Programmed cell death; Immune system; Receptor; T cell; Immunology; Biochemistry","score_opus":0.013089962848419042,"score_gpt":0.21957108801201056,"score_spread":0.20648112516359152,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586225063","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977044,0.00052754796,0.000018625777,0.00028742984,0.00019045101,0.00040588065,0.000026986998,0.000026344675,0.0008123528],"genre_scores_gemma":[0.99898463,0.00024182587,0.00007827874,0.000021364469,0.0000084802305,0.00004642896,0.00003737441,0.000016012717,0.00056560023],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877936,0.00018016179,0.00042811534,0.0002548988,0.000044083303,0.00031338615],"domain_scores_gemma":[0.9989989,0.00012644705,0.000312055,0.00048295065,0.00005893325,0.00002074171],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004001636,0.00017927382,0.0003615852,0.00016417379,0.00021310327,0.000028362078,0.0002626131,0.00028411904,0.00015052677],"category_scores_gemma":[0.00020129644,0.0001622122,0.0000735253,0.00007954176,0.00023861245,0.00024270543,0.00010758873,0.00021129767,0.00012705008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002360964,0.00007993578,0.0018039179,0.00003534421,0.000059524893,8.010294e-7,0.0005252767,9.11563e-7,0.9846166,0.00024378818,0.00007928036,0.012318519],"study_design_scores_gemma":[0.0013694309,0.00014946118,0.01780754,0.00009007178,0.000017656717,0.0000023299724,0.00019127977,0.0000070412134,0.9778812,0.000055292967,0.0022534747,0.00017523533],"about_ca_topic_score_codex":0.00056582363,"about_ca_topic_score_gemma":0.000043280605,"teacher_disagreement_score":0.01600362,"about_ca_system_score_codex":0.000026469621,"about_ca_system_score_gemma":0.000058998558,"threshold_uncertainty_score":0.66148216},"labels":[],"label_agreement":null},{"id":"W2586528952","doi":"10.1016/j.cyto.2017.01.017","title":"Type I interferon signalling is not required for the induction of endotoxin tolerance","year":2017,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research; Health Canada; Canada Research Chairs","keywords":"Interferon; Lipopolysaccharide; TLR4; Cytokine; Biology; Immunology; Sepsis; Wild type; Function (biology); Immune system; Microbiology; Cell biology; Biochemistry; Gene","score_opus":0.04608572980879512,"score_gpt":0.29041044328425175,"score_spread":0.24432471347545665,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2586528952","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942815,0.00079873815,0.0019938461,0.0012889751,0.0010622601,0.00027158827,0.0000107347205,0.000015433272,0.00027698223],"genre_scores_gemma":[0.99759525,0.000083807376,0.00005924746,0.000079099904,0.000074034186,0.00001930222,0.000018407723,0.000007291659,0.002063559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9995405,0.000033726294,0.00018638639,0.000103779326,0.000017263792,0.00011834175],"domain_scores_gemma":[0.9992445,0.00010776819,0.00020871157,0.00033353042,0.000101861166,0.0000036368176],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024412053,0.00006881747,0.000127849,0.000030218327,0.0003010243,0.000014940615,0.00023052288,0.000100905636,0.00012372939],"category_scores_gemma":[0.00018930485,0.000048703234,0.000053970536,0.000022689235,0.00011723883,0.000117888376,0.000040873943,0.00009185693,0.00006403436],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001345138,0.000012434643,0.000053071206,0.000012298772,0.000054728163,1.1474928e-7,0.00034258157,0.000008871965,0.9804838,0.00045266666,0.0010181555,0.016216159],"study_design_scores_gemma":[0.0007109996,0.00020794103,0.0030436711,0.000038923972,0.00002364837,0.0000041148664,0.000050871327,0.00005086657,0.9587552,0.00009664592,0.036963854,0.00005323903],"about_ca_topic_score_codex":0.000033829638,"about_ca_topic_score_gemma":0.0000031147804,"teacher_disagreement_score":0.0359457,"about_ca_system_score_codex":0.000012753938,"about_ca_system_score_gemma":0.000023001352,"threshold_uncertainty_score":0.2315266},"labels":[],"label_agreement":null},{"id":"W2587329107","doi":"10.1177/0960327116685889","title":"Concomitant effect of low dose of lindane and intranasal lipopolysaccharide on respiratory system of mice","year":2017,"lang":"en","type":"article","venue":"Human & Experimental Toxicology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Department of Science and Technology, Ministry of Science and Technology, India","keywords":"Lindane; Lipopolysaccharide; Respiratory system; Saline; Pharmacology; Inhalation; Inflammation; Tumor necrosis factor alpha; Toxicity; Lung; Medicine; Chemistry; Immunology; Internal medicine; Biology; Pesticide; Anesthesia","score_opus":0.016400953004712504,"score_gpt":0.2972404098109635,"score_spread":0.280839456806251,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2587329107","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99656415,0.0014262054,0.0000016716649,0.000016491034,0.00039629586,0.00034623052,0.0000068636987,0.000014762671,0.0012273049],"genre_scores_gemma":[0.9997991,0.00001029301,0.0000062740914,0.000019388413,0.000023931141,0.00002359869,0.0000085100955,0.000012923968,0.0000960331],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860644,0.00043048753,0.0005294514,0.00020383365,0.000040152016,0.00018962054],"domain_scores_gemma":[0.99869627,0.00021375541,0.0006160902,0.0004172239,0.000039045713,0.000017590914],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042545595,0.00016609557,0.00059727824,0.0001294692,0.00019497689,0.0000060134935,0.0002604145,0.00027419833,0.00015148638],"category_scores_gemma":[0.000064424734,0.00014451524,0.00009225295,0.000016390559,0.0008604815,0.000080720805,0.00011812915,0.00012663912,0.000023248605],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027099012,0.0001623859,0.0007222497,0.00017693453,0.00013909407,0.000006964745,0.0006707694,8.699195e-7,0.98938614,0.005169411,0.000047037185,0.0008082123],"study_design_scores_gemma":[0.0036325266,0.0056075766,0.0041810516,0.00017692287,0.000033070148,0.000021211981,0.0003863173,0.0000023588775,0.9857057,0.0000046791815,0.00014454553,0.00010406972],"about_ca_topic_score_codex":0.00007725706,"about_ca_topic_score_gemma":0.000008186691,"teacher_disagreement_score":0.0054451907,"about_ca_system_score_codex":0.000048092836,"about_ca_system_score_gemma":0.000032499804,"threshold_uncertainty_score":0.58931607},"labels":[],"label_agreement":null},{"id":"W2590714162","doi":"10.1038/ncomms14811","title":"The comparative immunology of wild and laboratory mice, Mus musculus domesticus","year":2017,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":292,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Centre for Ecology and Hydrology; University of Bristol; McGill University; National Centre for the Replacement, Refinement and Reduction of Animals in Research; Natural Environment Research Council; Sight Research UK","keywords":"Immune system; Biology; Immunology; Laboratory mouse; Population; Antigen; Cytokine; Cell biology; Genetics; Medicine; Gene","score_opus":0.015197741217744509,"score_gpt":0.3056367750129647,"score_spread":0.2904390337952202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2590714162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8096195,0.1718042,0.00001380808,0.008510074,0.0007913739,0.0004030568,0.000042664185,0.00004669725,0.008768653],"genre_scores_gemma":[0.994256,0.004960621,0.0001700246,0.000060958035,0.000009831255,0.00003283772,0.000048379105,0.0000063700913,0.00045495355],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990017,0.00043852802,0.00025631217,0.00011598397,0.000026257008,0.00016123064],"domain_scores_gemma":[0.9963944,0.00085411285,0.00035621115,0.0021224776,0.00026309508,0.000009729365],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0003952288,0.000109923545,0.00020590021,0.000056238547,0.001981556,0.000040853425,0.0013087924,0.00034706036,0.000010712185],"category_scores_gemma":[0.0005354253,0.00007894593,0.00004602681,0.000066516295,0.0016722677,0.00014626823,0.0005061371,0.0008181116,0.000051392017],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043496955,0.0002013506,0.0033385532,0.000014868734,0.0008392501,0.000001137652,0.003329488,0.0000011137793,0.8118879,0.15810002,0.008506619,0.0133446865],"study_design_scores_gemma":[0.0012482788,0.00011961747,0.2495215,0.00004408153,0.000085217674,0.000027329357,0.0011414834,0.000018683715,0.07365734,0.00046343563,0.6734883,0.00018473905],"about_ca_topic_score_codex":0.00006345042,"about_ca_topic_score_gemma":0.0003162537,"teacher_disagreement_score":0.7382306,"about_ca_system_score_codex":0.00001807261,"about_ca_system_score_gemma":0.00007942035,"threshold_uncertainty_score":0.9993177},"labels":[],"label_agreement":null},{"id":"W2591423018","doi":"10.1016/j.nbd.2017.02.002","title":"Laquinimod enhances central nervous system barrier functions","year":2017,"lang":"en","type":"article","venue":"Neurobiology of Disease","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft; Teva Pharmaceutical Industries","keywords":"ALCAM; Experimental autoimmune encephalomyelitis; Multiple sclerosis; Blood–brain barrier; Central nervous system; Cell adhesion molecule; Neuroinflammation; Myelin; Chemokine; Effector; Cell biology; Immunology; Biology; Inflammation; Neuroscience","score_opus":0.008994402876913957,"score_gpt":0.22764298711751488,"score_spread":0.2186485842406009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2591423018","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951369,0.0004067189,0.00007641517,0.00033413313,0.0022279941,0.00018697149,0.00009108378,0.000076072305,0.0014636692],"genre_scores_gemma":[0.9968701,0.00003288353,0.000005329629,0.000056297573,0.000060477912,0.000025484744,0.00011956391,0.000011359643,0.0028185286],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9988253,0.00026674176,0.00029197038,0.0002585349,0.000020885505,0.0003365539],"domain_scores_gemma":[0.99882966,0.000082899525,0.00029202065,0.00067871914,0.000067541085,0.000049181835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112214824,0.00015035085,0.00025641746,0.000073788186,0.0005600947,0.000016981528,0.00037800215,0.00015745773,0.00028432533],"category_scores_gemma":[0.00020610432,0.00013015835,0.00015367076,0.000025012207,0.000517398,0.00015362029,0.000104462146,0.0001558723,0.00048566284],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00184554,0.000119924625,0.012340797,0.000098434844,0.00017555045,0.000006345922,0.00013082952,0.00002203863,0.9771528,0.0016606558,0.0033053868,0.0031416854],"study_design_scores_gemma":[0.0013212526,0.00034239417,0.5809632,0.00006752153,0.00016804259,0.000010877108,0.00019235628,0.000007935028,0.39257815,0.000032235184,0.024081327,0.0002346804],"about_ca_topic_score_codex":0.00003675805,"about_ca_topic_score_gemma":0.000005461544,"teacher_disagreement_score":0.58457464,"about_ca_system_score_codex":0.000016957145,"about_ca_system_score_gemma":0.000108172826,"threshold_uncertainty_score":0.62423754},"labels":[],"label_agreement":null},{"id":"W2592172886","doi":"10.2147/ott.s112165","title":"Toll-like receptor-4 as a predictor of clinical outcomes of estrogen receptor-negative breast cancer in Saudi women","year":2017,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Hôtel-Dieu de Québec","funders":"","keywords":"Breast cancer; Medicine; Estrogen receptor; Toll-like receptor; Oncology; Receptor; Internal medicine; Estrogen; Cancer; Innate immune system","score_opus":0.019198467815052953,"score_gpt":0.32422625563115176,"score_spread":0.3050277878160988,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592172886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99512005,0.002673065,0.0000010746174,0.00055223674,0.000858847,0.00023887106,0.00011496898,0.000010144066,0.00043075622],"genre_scores_gemma":[0.9874283,0.011024971,0.00004275952,0.00006927601,0.00004625327,0.00004050293,0.000014459183,0.000012500957,0.0013209758],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9986838,0.00024239835,0.0005844884,0.00020928872,0.000046965906,0.00023306017],"domain_scores_gemma":[0.998816,0.0001930148,0.0005462661,0.00032686655,0.000092016635,0.000025795427],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00061014394,0.00015139472,0.0006078528,0.00006907893,0.000119095996,0.000010123179,0.00021837573,0.00023387713,0.0013778872],"category_scores_gemma":[0.00011916208,0.00011210927,0.000109776156,0.000034951154,0.00037839665,0.00015982873,0.000057810736,0.0001846313,0.000025517182],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045824507,0.0002922812,0.8143923,0.000018590485,0.00072149263,0.0000014765656,0.0026957323,7.372268e-7,0.09558516,0.00031165633,0.00053887337,0.08085922],"study_design_scores_gemma":[0.0049174908,0.0005319373,0.9294412,0.00007614794,0.000009791564,0.0000051264824,0.00031040653,0.0000015649125,0.036047466,0.0003014842,0.028214764,0.00014262761],"about_ca_topic_score_codex":0.0009731248,"about_ca_topic_score_gemma":0.00003595237,"teacher_disagreement_score":0.115048856,"about_ca_system_score_codex":0.000028458207,"about_ca_system_score_gemma":0.00014372883,"threshold_uncertainty_score":0.99953496},"labels":[],"label_agreement":null},{"id":"W2592644749","doi":"10.1097/pcc.0000000000001048","title":"Specific Etiologies Associated With the Multiple Organ Dysfunction Syndrome in Children: Part 1","year":2017,"lang":"en","type":"review","venue":"Pediatric Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"National Heart, Lung, and Blood Institute; National Institutes of Health","keywords":"Medicine; Organ dysfunction; Multiple organ dysfunction syndrome; Intensive care medicine; Sepsis; Disease; MEDLINE; Bioinformatics; Pathology; Immunology","score_opus":0.0486258381713306,"score_gpt":0.3141417185248398,"score_spread":0.2655158803535092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2592644749","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0022468537,0.994611,0.00001512506,0.0005941956,0.0012199574,0.000858974,0.000049615766,0.00009072252,0.00031351348],"genre_scores_gemma":[0.049151633,0.9475275,0.0000016900094,0.000030676063,0.0005159178,0.00015084441,0.0021982042,0.000042005868,0.00038150724],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99723244,0.0009173663,0.0007130228,0.00049019,0.000121558674,0.0005254512],"domain_scores_gemma":[0.9961785,0.0025717267,0.00034298844,0.0006787715,0.0001980804,0.000029938112],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00081679283,0.00046260015,0.0015512379,0.00033019602,0.00040574383,0.000028435226,0.000502641,0.00077901897,0.00041868773],"category_scores_gemma":[0.0046761213,0.00024612265,0.00017941187,0.00036054887,0.00073402945,0.000090255446,0.000107677966,0.0012440805,0.00033204877],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028792862,0.00025272628,0.008987502,0.006140663,0.00070240407,0.0002833762,0.0010251775,8.8352726e-7,0.0000134636575,0.0003759527,0.029579356,0.95235056],"study_design_scores_gemma":[0.0016161171,0.00078374194,0.009524884,0.002815933,0.001843369,0.0005662041,0.00042536578,1.0678649e-7,0.0000033446004,0.000010910342,0.98194915,0.0004608938],"about_ca_topic_score_codex":0.000055721557,"about_ca_topic_score_gemma":0.000026210899,"teacher_disagreement_score":0.95236975,"about_ca_system_score_codex":0.00018303588,"about_ca_system_score_gemma":0.0002050592,"threshold_uncertainty_score":0.9999991},"labels":[],"label_agreement":null},{"id":"W2594458751","doi":"10.1016/j.imlet.2017.02.015","title":"MiR-146a potentially promotes IVIg-mediated inhibition of TLR4 signaling in LPS-activated human monocytes","year":2017,"lang":"en","type":"article","venue":"Immunology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Héma-Québec","funders":"","keywords":"IRF3; TLR4; Sepsis; Immunology; Monocyte; Inflammation; Lipopolysaccharide; microRNA; Medicine; Signal transduction; Receptor; Downregulation and upregulation; Chemistry; Biology; Innate immune system; Cell biology; Gene; Immune system; Internal medicine","score_opus":0.014548431080350406,"score_gpt":0.24695779243963656,"score_spread":0.23240936135928617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2594458751","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955177,0.00054847077,0.00006727723,0.0027983566,0.00045587035,0.00035811635,0.000009184499,0.000078818084,0.00016622011],"genre_scores_gemma":[0.9992482,0.00003086403,0.000057228113,0.00016163323,0.000020733034,0.00003720306,0.00030868655,0.000026379825,0.00010907179],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980679,0.00042387965,0.00065135205,0.0003322003,0.00004727748,0.00047740265],"domain_scores_gemma":[0.9985044,0.00015191233,0.00063258474,0.0006134773,0.000086430075,0.0000112121625],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043455375,0.0002529006,0.00046261013,0.00039813764,0.00046218163,0.000036517304,0.0004065341,0.00043914915,0.00021215594],"category_scores_gemma":[0.00029684685,0.00025405106,0.00012183929,0.00010236125,0.0007068658,0.00043707583,0.00015585411,0.0004885282,0.00016104286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005346773,0.000116931544,0.003624204,0.000020700947,0.00026656242,0.000029650328,0.0005234473,0.000009923832,0.99352473,0.0001888297,0.00012522082,0.0010351219],"study_design_scores_gemma":[0.0024100519,0.00017273045,0.083206624,0.00012267512,0.000028179287,0.000023084023,0.00009920919,0.0000021926994,0.9129954,0.000089623485,0.00062450586,0.00022575764],"about_ca_topic_score_codex":0.0005504748,"about_ca_topic_score_gemma":0.00003938563,"teacher_disagreement_score":0.08052936,"about_ca_system_score_codex":0.0000749781,"about_ca_system_score_gemma":0.000051630417,"threshold_uncertainty_score":0.9999912},"labels":[],"label_agreement":null},{"id":"W2595432088","doi":"10.71781/29640","title":"Étude de la fonction de l'interleukine-21 dans le système immunitaire","year":2003,"lang":"fr","type":"dissertation","venue":"Papyrus : Institutional Repository (Université de Montréal)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research","keywords":"Humanities; Philosophy","score_opus":0.0028557850672649965,"score_gpt":0.17039262938471628,"score_spread":0.16753684431745128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2595432088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.919109,0.036310416,0.0029429798,0.00022972771,0.0018346717,0.0004156622,0.000034382243,0.00013943564,0.03898373],"genre_scores_gemma":[0.8618773,0.0015037577,0.0002785056,0.00008178906,0.000094708936,0.00005225006,0.0011242661,0.00005407779,0.13493335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958016,0.0020158337,0.0006407818,0.000569447,0.00017981873,0.000792508],"domain_scores_gemma":[0.9981232,0.00031600395,0.0005968663,0.00052171334,0.00029773542,0.00014445742],"candidate_categories":["metaepi_narrow","sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007625019,0.00060909044,0.0005730905,0.0004544582,0.009119183,0.00007889811,0.0005312961,0.001740114,0.0001686981],"category_scores_gemma":[0.00018473256,0.00075339986,0.00052371074,0.00032328814,0.00069911743,0.0005010878,0.0001259775,0.001123307,0.0002685326],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":true,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029813137,0.00044727096,0.0071231513,0.00030428165,0.0012511672,0.0013144354,0.052559074,0.0018391573,0.88178277,0.046233602,0.0009140961,0.0032496555],"study_design_scores_gemma":[0.004137342,0.0004275929,0.14854018,0.0011385034,0.0010899267,0.01205912,0.11920454,0.0006487677,0.6222775,0.0006770027,0.08854027,0.0012592616],"about_ca_topic_score_codex":0.08448255,"about_ca_topic_score_gemma":0.006890915,"teacher_disagreement_score":0.2595053,"about_ca_system_score_codex":0.014515769,"about_ca_system_score_gemma":0.005413734,"threshold_uncertainty_score":0.9995558},"labels":[],"label_agreement":null},{"id":"W2600139037","doi":"","title":"Infiltration Of Rorγt+ Lineage Negative Lymphocytes Into The Lung During Lipopolysaacharide-Induced Acute Lung Injury","year":2012,"lang":"en","type":"article","venue":"Research Portal (Queen's University Belfast)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lung; Infiltration (HVAC); Lineage (genetic); Medicine; Pathology; Immunology; Biology; Internal medicine; Genetics; Gene; Physics","score_opus":0.012655506215946558,"score_gpt":0.280210774786459,"score_spread":0.26755526857051243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2600139037","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967292,0.00022347619,0.000047764788,0.0005804648,0.00022515056,0.00052286737,0.000021502685,0.000059610637,0.0015899505],"genre_scores_gemma":[0.99380386,0.0004086491,0.00003540943,0.00001322489,0.00007946443,0.0000052959335,0.00010035503,0.000018075118,0.0055356617],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974282,0.0010394236,0.0003406016,0.0002643005,0.00022222093,0.00070527894],"domain_scores_gemma":[0.9984397,0.0004124583,0.00022885151,0.00045339763,0.00039564367,0.00006992957],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012049293,0.00020433289,0.00028964208,0.0005330091,0.0009915328,0.000024801573,0.00047835644,0.00030729428,0.00044747867],"category_scores_gemma":[0.00028750987,0.00017612874,0.00015270716,0.00071189465,0.0004323392,0.0009982765,0.00040307257,0.000710585,0.00012653836],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020269738,0.0001955932,0.012801025,0.00008936072,0.0008702366,0.000039234492,0.01027023,0.000006226142,0.9647313,0.005282801,0.0028265459,0.0008604836],"study_design_scores_gemma":[0.0010951578,0.00018444525,0.039953336,0.000072210445,0.00009396412,0.00001660716,0.005980567,0.000023012342,0.9503235,0.000018639581,0.0020351147,0.00020340015],"about_ca_topic_score_codex":0.002824374,"about_ca_topic_score_gemma":0.000024591489,"teacher_disagreement_score":0.027152313,"about_ca_system_score_codex":0.00030609148,"about_ca_system_score_gemma":0.00036164405,"threshold_uncertainty_score":0.7626169},"labels":[],"label_agreement":null},{"id":"W2603204315","doi":"10.1155/2017/7353252","title":"All-Trans Retinoic Acid Modulates TLR4/NF-<i>κ</i>B Signaling Pathway Targeting TNF-<i>α</i>and Nitric Oxide Synthase 2 Expression in Colonic Mucosa during Ulcerative Colitis and Colitis Associated Cancer","year":2017,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":81,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Agence Thématique de Recherche en Sciences de la Santé; Agence Universitaire de la Francophonie","keywords":"Colitis; Retinoic acid; Tumor necrosis factor alpha; TLR4; Cancer research; NF-κB; Ulcerative colitis; Signal transduction; Nitric oxide synthase; Inflammatory bowel disease; Medicine; Immunology; Biology; Nitric oxide; Inflammation; Internal medicine; Biochemistry; Disease","score_opus":0.007483751435285026,"score_gpt":0.2314779822305915,"score_spread":0.22399423079530648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2603204315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970722,0.0017091527,0.000024118635,0.00029705596,0.00020294538,0.0005464201,0.000055631805,0.000050636398,0.000041837582],"genre_scores_gemma":[0.99833614,0.001162593,0.00006035721,0.000015232181,0.00005269392,0.00011669871,0.00017258091,0.000025865818,0.000057870573],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977641,0.0005501718,0.00078151486,0.00035168816,0.0001143392,0.00043818078],"domain_scores_gemma":[0.9982822,0.00034389945,0.0008918964,0.0002487542,0.00018540036,0.000047877154],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009857664,0.00026946815,0.00049183593,0.0002847885,0.00056122587,0.0000700971,0.00018401786,0.00041014954,0.000074095304],"category_scores_gemma":[0.0014593094,0.00027091545,0.000064886,0.0001082591,0.00025238757,0.00068607467,0.00011035277,0.00034627022,0.0000072510743],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008052754,0.000029858542,0.017467672,0.00013534875,0.00008781656,0.0000141880355,0.0027891058,0.00005684165,0.9769051,0.000044203913,0.000022381975,0.0016422044],"study_design_scores_gemma":[0.0018727585,0.0000359239,0.31439215,0.00042734,0.000032429863,0.0000058471333,0.00030640964,0.00012331655,0.682438,0.000088247514,0.00008584347,0.00019174124],"about_ca_topic_score_codex":0.00058952864,"about_ca_topic_score_gemma":0.0003537665,"teacher_disagreement_score":0.29692447,"about_ca_system_score_codex":0.00015457274,"about_ca_system_score_gemma":0.0001141641,"threshold_uncertainty_score":0.9999743},"labels":[],"label_agreement":null},{"id":"W2604296355","doi":"10.1021/acs.analchem.6b04799","title":"Detection of the Lipopeptide Pam3CSK4 Using a Hybridized Toll-like Receptor Electrochemical Sensor","year":2017,"lang":"en","type":"article","venue":"Analytical Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; Royal Military College of Canada; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopeptide; Chemistry; Analyte; Detection limit; Electrochemistry; Innate immune system; Electrochemical gas sensor; TLR2; In vivo; Nanotechnology; Receptor; Combinatorial chemistry; Biophysics; Chromatography; Electrode; Materials science; Biochemistry; Bacteria; Biology","score_opus":0.012608305177116029,"score_gpt":0.247776074561242,"score_spread":0.23516776938412598,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604296355","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99776614,0.00014494295,0.0001600768,0.00023330461,0.00015059169,0.00007636399,0.0000032104672,0.000020616744,0.001444748],"genre_scores_gemma":[0.99585587,0.000017400247,0.00003501637,0.000031915097,0.00006317645,0.0000035626952,0.000012141645,0.000010494728,0.0039704363],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991529,0.000061644765,0.0002875244,0.00019658172,0.000053069976,0.00024825148],"domain_scores_gemma":[0.9989762,0.000078687284,0.00022962624,0.0006182961,0.00007794434,0.00001927294],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017874588,0.00012921574,0.00023005162,0.000014365018,0.00029534474,0.000023916149,0.0003319733,0.00024073762,0.00031028152],"category_scores_gemma":[0.0006061773,0.000096700576,0.0001909399,0.000045745386,0.00032176948,0.00007376912,0.0001224646,0.00031439544,0.00006327585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027166508,0.000030242189,0.0002587845,0.000022995213,0.00009920305,8.2518557e-7,0.0000146665325,6.168163e-7,0.9986524,0.0000104838155,0.00019147774,0.0004466658],"study_design_scores_gemma":[0.00056109927,0.000015515967,0.00057009864,0.000038675294,0.000084101266,0.00006439835,0.000030125135,0.00020082384,0.99187446,0.000026896732,0.0064213634,0.000112453534],"about_ca_topic_score_codex":0.000042040036,"about_ca_topic_score_gemma":0.0000015215963,"teacher_disagreement_score":0.006777926,"about_ca_system_score_codex":0.000059373513,"about_ca_system_score_gemma":0.00007189676,"threshold_uncertainty_score":0.3943335},"labels":[],"label_agreement":null},{"id":"W2604753011","doi":"10.1038/ncomms14805","title":"Constitutive smooth muscle tumour necrosis factor regulates microvascular myogenic responsiveness and systemic blood pressure","year":2017,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Heart and Stroke Foundation; St. Michael's Hospital; University of Toronto; University Health Network; Canada Research Chairs; York University","funders":"Canadian Institutes of Health Research; University of Toronto; Russian Science Foundation; Canadian Stroke Network; Heart and Stroke Foundation of Canada","keywords":"Tumor necrosis factor alpha; Myogenic contraction; Vasoconstriction; Cytokine; Biology; Cell biology; Medicine; Internal medicine; Endocrinology; Smooth muscle","score_opus":0.01331089385442895,"score_gpt":0.2602064101438004,"score_spread":0.24689551628937145,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604753011","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.83961993,0.15675925,0.000013763406,0.001673217,0.00037462616,0.0005399086,0.000092160655,0.00009477347,0.0008323503],"genre_scores_gemma":[0.9948661,0.0033181428,0.00020389482,0.00007672892,0.000018137367,0.00006463059,0.00015671614,0.00002018667,0.0012755175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984508,0.0006099115,0.00031740888,0.0003032122,0.000049281476,0.00026939262],"domain_scores_gemma":[0.99596083,0.0004393266,0.0003512806,0.0029278144,0.0002920233,0.00002874945],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00038481152,0.00022046447,0.00032977294,0.00013054092,0.0020717604,0.00013707348,0.0014119478,0.00069188856,0.000046669833],"category_scores_gemma":[0.00082737714,0.00020390296,0.00013519515,0.00007744162,0.00091795507,0.00032820838,0.00067454315,0.0009080341,0.00007470415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011519177,0.0000771104,0.0014398125,0.000034342433,0.0006068598,0.0000027475626,0.0005583939,0.0000014827424,0.9897222,0.0050395746,0.00044996227,0.0019523383],"study_design_scores_gemma":[0.0020925961,0.000077601966,0.2811661,0.0003172468,0.0008576095,0.00023102877,0.00031640482,0.000014577794,0.5124454,0.00018912942,0.20185268,0.00043962855],"about_ca_topic_score_codex":0.00012721562,"about_ca_topic_score_gemma":0.0000921712,"teacher_disagreement_score":0.4772768,"about_ca_system_score_codex":0.000020697944,"about_ca_system_score_gemma":0.00014887647,"threshold_uncertainty_score":0.9992274},"labels":[],"label_agreement":null},{"id":"W2604801981","doi":"10.71781/32192","title":"Investigating the thymopoiesis stimulating property of interleukin-21 in aging mice","year":2016,"lang":"en","type":"dissertation","venue":"Open MIND","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Cancer Research Society","keywords":"Interleukin 1β; Interleukin; Immunology; Medicine; Cytokine","score_opus":0.027386176157736416,"score_gpt":0.298271357385101,"score_spread":0.2708851812273646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2604801981","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97684205,0.000911065,0.0000034161426,0.00022549811,0.00041005187,0.0006122707,0.000011053892,0.0000018150133,0.020982798],"genre_scores_gemma":[0.94852424,0.000032704,0.00022109677,0.0000205124,0.00002487917,0.000041799492,0.00050404744,0.00002451854,0.05060623],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983834,0.00041123654,0.0006502856,0.00027535146,0.000043668315,0.00023606206],"domain_scores_gemma":[0.99870276,0.00036599362,0.00053164945,0.00029049846,0.000101324455,0.000007784859],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000850918,0.00020504667,0.00037468344,0.00014645036,0.00016879484,0.00005115258,0.00064756034,0.00030790162,0.0013352855],"category_scores_gemma":[0.000487122,0.00010857781,0.00007132861,0.00014451242,0.00009670921,0.0002334912,0.0001436557,0.0003761356,0.00034055108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015074696,0.000018338666,0.00048088882,0.00004305012,0.00008198406,0.0000011745644,0.010011172,0.000004495289,0.78673756,0.0000105416275,0.00012465636,0.20233536],"study_design_scores_gemma":[0.00088362326,0.00007682114,0.0037272493,0.002576344,0.000058769467,0.000008144751,0.0066573517,0.000016622349,0.97226495,0.000066110486,0.013414647,0.0002493943],"about_ca_topic_score_codex":0.0006161695,"about_ca_topic_score_gemma":0.0005575012,"teacher_disagreement_score":0.20208597,"about_ca_system_score_codex":0.000051818683,"about_ca_system_score_gemma":0.00023999928,"threshold_uncertainty_score":0.99957764},"labels":[],"label_agreement":null},{"id":"W2605687312","doi":"10.1152/ajpheart.00800.2016","title":"Toll-like receptor 2 dominance over Toll-like receptor 4 in stressful conditions for its detrimental role in the heart","year":2017,"lang":"en","type":"article","venue":"American Journal of Physiology-Heart and Circulatory Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; St. Boniface Hospital","funders":"","keywords":"TLR4; Receptor; TLR2; Toll-like receptor; Downregulation and upregulation; Tumor necrosis factor alpha; Signal transduction; Biology; Cell biology; Apoptosis; Knockout mouse; Endocrinology; Immunology; Innate immune system; Biochemistry; Gene","score_opus":0.009893668860105733,"score_gpt":0.26443910421666983,"score_spread":0.2545454353565641,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605687312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996025,0.0017298117,7.0592876e-7,0.0007588942,0.0009959432,0.00039877737,0.00004312944,0.00000901113,0.00003869896],"genre_scores_gemma":[0.9983821,0.00022279433,0.00004520913,0.00092925696,0.00018509732,0.00006575326,0.000064278356,0.000020957204,0.000084556385],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9975271,0.00077022705,0.00069499115,0.0004029201,0.00006410139,0.0005406466],"domain_scores_gemma":[0.9980916,0.00048767196,0.0007621248,0.0005069288,0.00011036773,0.000041347674],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006389003,0.00028325533,0.00088134443,0.0002367124,0.0004886852,0.000027013702,0.00049638207,0.00023339246,0.00018626175],"category_scores_gemma":[0.00012948678,0.00022200949,0.00025335076,0.00012385509,0.001106422,0.00039707508,0.00009003583,0.0005911552,0.00006833991],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011902205,0.00020384337,0.0027404383,0.00001702752,0.00010862434,4.9821983e-7,0.00059251813,0.00002011977,0.99093366,0.00024530414,0.0036015424,0.00034618497],"study_design_scores_gemma":[0.0031403692,0.0012981468,0.90917146,0.00009218795,0.000041482235,0.00013239529,0.0017200314,0.000019369678,0.04709059,0.0005069065,0.036492568,0.0002945017],"about_ca_topic_score_codex":0.00008243929,"about_ca_topic_score_gemma":0.000025220332,"teacher_disagreement_score":0.94384307,"about_ca_system_score_codex":0.00007240774,"about_ca_system_score_gemma":0.00015275074,"threshold_uncertainty_score":0.90532845},"labels":[],"label_agreement":null},{"id":"W2605767208","doi":"10.1002/cyto.a.23109","title":"<scp>OMIP</scp>‐038: Innate immune assessment with a 14 color flow cytometry panel","year":2017,"lang":"en","type":"article","venue":"Cytometry Part A","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Innate immune system; Immune system; Immunology; Innate lymphoid cell; Acquired immune system; Cytokine; Biology; Flow cytometry; Pattern recognition receptor; Medicine","score_opus":0.024276411669872048,"score_gpt":0.27721889216457624,"score_spread":0.2529424804947042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2605767208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9789457,0.0018203455,0.0011850711,0.00035552922,0.0016015286,0.0005827231,0.000047823563,0.00019443469,0.0152668785],"genre_scores_gemma":[0.977207,0.0002345916,0.0005509983,0.00016288049,0.00013411524,0.00014972605,0.0002666756,0.00005833925,0.021235669],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974436,0.00032352508,0.00062788976,0.0005747647,0.00016292448,0.00086728035],"domain_scores_gemma":[0.99705464,0.00043899956,0.0006552447,0.0015236624,0.00025969098,0.00006773937],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011068714,0.0004479882,0.0007234491,0.0006175113,0.0012987244,0.00024684673,0.00090188696,0.0005349773,0.00044291673],"category_scores_gemma":[0.0008113881,0.0003676651,0.00020046359,0.00047182586,0.0005346864,0.00058757694,0.0003782222,0.00074966555,0.002377167],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008612543,0.00061359076,0.041860517,0.00014750155,0.0017142114,0.00018879033,0.00087998563,0.00003415345,0.91717845,0.0007973692,0.021698242,0.014025949],"study_design_scores_gemma":[0.0050931964,0.00086907856,0.34819037,0.00019106323,0.0001768971,0.0002746381,0.00050935824,0.00013728389,0.30529913,0.000051966865,0.33885616,0.00035086274],"about_ca_topic_score_codex":0.000047771493,"about_ca_topic_score_gemma":0.000009737923,"teacher_disagreement_score":0.6118793,"about_ca_system_score_codex":0.00015685026,"about_ca_system_score_gemma":0.00026400853,"threshold_uncertainty_score":0.9998775},"labels":[],"label_agreement":null},{"id":"W2606821149","doi":"10.1096/fasebj.30.1_supplement.1262.6","title":"The Src Family Tyrosine Kinase fyn Protects Mice from Inflammation‐induced Lung Injury","year":2016,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"FYN; Proto-oncogene tyrosine-protein kinase Src; Src family kinase; Tyrosine kinase; Tyrosine-protein kinase CSK; Inflammation; Lung; Cancer research; Bruton's tyrosine kinase; Medicine; Kinase; Chemistry; Cell biology; Immunology; Receptor; Biology; Internal medicine; SH3 domain","score_opus":0.011208731049133903,"score_gpt":0.23082961267675242,"score_spread":0.21962088162761853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2606821149","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9892157,0.0025413677,0.00060268893,0.005864997,0.0010932009,0.00031966076,0.000013425826,0.00004133518,0.0003076317],"genre_scores_gemma":[0.99655503,0.0004613429,0.000019956376,0.00015204692,0.00034405658,0.000024772758,0.000010691545,0.00001733083,0.0024147816],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99817324,0.0007965249,0.00044388926,0.00013534629,0.00008408513,0.00036689258],"domain_scores_gemma":[0.99850935,0.00057906995,0.000351803,0.00037774778,0.00015573342,0.000026318285],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001095626,0.00017278189,0.00016376945,0.00007295945,0.0012175008,0.00009507291,0.00049338967,0.0001654582,0.00023546345],"category_scores_gemma":[0.0003996939,0.000074618896,0.00011354533,0.00011008927,0.00017002341,0.00028653536,0.00009012336,0.00049246475,0.00096195255],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082492124,0.000011573547,0.000048882815,0.0000017207693,0.00013920793,0.000005050531,0.00040300915,9.254053e-7,0.9518347,0.000279758,0.00304309,0.0434072],"study_design_scores_gemma":[0.0011298377,0.00011304965,0.0046729143,0.00010500379,0.000043204363,0.00009728042,0.00023272332,0.0000069735906,0.97480977,0.0007863304,0.017869905,0.00013301814],"about_ca_topic_score_codex":0.000055825185,"about_ca_topic_score_gemma":0.000009091613,"teacher_disagreement_score":0.043274183,"about_ca_system_score_codex":0.00010016045,"about_ca_system_score_gemma":0.00015781842,"threshold_uncertainty_score":0.99981594},"labels":[],"label_agreement":null},{"id":"W2607856708","doi":"10.2147/ott.s121618","title":"No genetic relationship between &lt;em&gt;TLR2&lt;/em&gt; rs4696480, rs3804100, and rs3804099 gene polymorphisms and female breast cancer in Saudi populations","year":2017,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Breast cancer; Medicine; Gene; Cancer; Oncology; Biology; Genetics; Internal medicine","score_opus":0.027574646184753974,"score_gpt":0.27573385777176,"score_spread":0.24815921158700605,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2607856708","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95702547,0.040845383,0.00003589637,0.00091592746,0.00037054313,0.00035941607,0.00011081691,0.000034345187,0.00030220934],"genre_scores_gemma":[0.9887644,0.008402182,0.00022459753,0.00010054229,0.00016275978,0.00004720553,0.000102014055,0.000034285644,0.002162012],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9984743,0.00021105642,0.00042519826,0.0004209401,0.00006639919,0.00040209497],"domain_scores_gemma":[0.9990085,0.00013673225,0.00027583347,0.00043734116,0.000081687416,0.000059910108],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00035192625,0.00028875854,0.00041870415,0.0001838112,0.0009923052,0.00013027989,0.00017485289,0.000343885,0.00024331971],"category_scores_gemma":[0.000057889367,0.0002538992,0.000058608395,0.000075336706,0.00026563034,0.00034123423,0.00009459031,0.000263131,0.00005156272],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003719985,0.000058393663,0.81395674,0.000016640675,0.00012602865,0.000007438698,0.0012373668,0.0000048250095,0.12568113,0.0006644499,0.00020656969,0.057668433],"study_design_scores_gemma":[0.0024531533,0.0001433549,0.98121226,0.0000690252,0.00004003709,0.00006279675,0.00003417824,0.00002592181,0.0027275435,0.00076940743,0.012150332,0.0003120197],"about_ca_topic_score_codex":0.00047167856,"about_ca_topic_score_gemma":0.0004564639,"teacher_disagreement_score":0.1672555,"about_ca_system_score_codex":0.000040871186,"about_ca_system_score_gemma":0.00006569718,"threshold_uncertainty_score":0.9999913},"labels":[],"label_agreement":null},{"id":"W2608670027","doi":"10.4049/jimmunol.1602131","title":"Cutting Edge: A Dual TLR2 and TLR7 Ligand Induces Highly Potent Humoral and Cell-Mediated Immune Responses","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Wellcome Trust","keywords":"TLR7; TLR2; Immune system; Dual (grammatical number); Ligand (biochemistry); Enhanced Data Rates for GSM Evolution; Cell biology; Immunology; Biology; Chemistry; Receptor; Toll-like receptor; Innate immune system; Genetics; Computer science","score_opus":0.014038376691591175,"score_gpt":0.24359632017047,"score_spread":0.22955794347887884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2608670027","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9563028,0.039234072,0.000010888663,0.0031867134,0.00088562985,0.00013324076,0.000004380544,0.000015171651,0.00022707104],"genre_scores_gemma":[0.9930555,0.0056940387,0.000036286216,0.00007624443,0.00007700983,0.0000023403168,0.0000056962567,0.00001750874,0.0010353343],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99790704,0.00082909944,0.0006927418,0.000140816,0.00005740284,0.00037290872],"domain_scores_gemma":[0.9974164,0.0007290128,0.0012073007,0.00043497584,0.00018845224,0.000023885088],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001835229,0.00022047998,0.0004878517,0.00022455545,0.0011210366,0.00008337116,0.0004558694,0.00030861853,0.000028782923],"category_scores_gemma":[0.0008843098,0.0001456459,0.000080177444,0.000050951447,0.000997438,0.00037332028,0.0003521712,0.00078322046,0.000047645026],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003263697,0.000049312897,0.00059232896,0.000011197492,0.00031485697,0.00003681778,0.0019909574,5.9062825e-7,0.98571384,0.00013246562,0.00020585692,0.00768807],"study_design_scores_gemma":[0.0034805485,0.0011548143,0.22251046,0.000106220235,0.00017152453,0.0038970443,0.0020046867,0.0000025916243,0.76128674,0.0001901156,0.0049921097,0.00020312054],"about_ca_topic_score_codex":0.00013710695,"about_ca_topic_score_gemma":0.000004704342,"teacher_disagreement_score":0.22442709,"about_ca_system_score_codex":0.00002863582,"about_ca_system_score_gemma":0.00013285968,"threshold_uncertainty_score":0.862222},"labels":[],"label_agreement":null},{"id":"W2609274154","doi":"10.1097/ta.0000000000001539","title":"C-peptide attenuates acute lung inflammation in a murine model of hemorrhagic shock and resuscitation by reducing gut injury","year":2017,"lang":"en","type":"article","venue":"The Journal of Trauma: Injury, Infection, and Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Armed Forces; Western University","funders":"","keywords":"Lipopolysaccharide; Lung; Resuscitation; Medicine; Evans Blue; Shock (circulatory); HMGB1; Vascular permeability; Inflammation; Circulatory system; Internal medicine; Pharmacology; Endocrinology; Anesthesia; Immunology","score_opus":0.011393682257894024,"score_gpt":0.29224932311710256,"score_spread":0.28085564085920856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2609274154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963456,0.0016571318,0.0004039769,0.0010096517,0.00024560696,0.00012846572,0.000019567758,0.000007789119,0.00018223353],"genre_scores_gemma":[0.9988926,0.00088336854,0.000055136443,0.00002304223,0.000055084514,0.000003497448,0.000013437563,0.000009803089,0.00006402541],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988097,0.00025247733,0.00058138825,0.000109869376,0.00007175014,0.00017483337],"domain_scores_gemma":[0.9988706,0.00018595044,0.00032939247,0.00019387153,0.00039476278,0.000025437681],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007726091,0.00013462282,0.0002714532,0.00017222026,0.00043354652,0.000049580405,0.00012425156,0.0001571898,0.000013959128],"category_scores_gemma":[0.00051129225,0.00010191291,0.00005992085,0.00005631462,0.0003438858,0.00059217913,0.000049965078,0.00035583938,0.0000016953669],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001997063,0.00005253638,0.0073096715,0.0002506644,0.0001068369,0.0000021223718,0.0048704725,0.00009987313,0.9682288,0.00074291433,0.001086261,0.015252755],"study_design_scores_gemma":[0.0033983346,0.0019308024,0.117096856,0.0007585913,0.0007533681,0.00041186335,0.0031472151,0.0019169338,0.8653972,0.004321589,0.00042137768,0.00044587758],"about_ca_topic_score_codex":0.00022691465,"about_ca_topic_score_gemma":0.00003947643,"teacher_disagreement_score":0.10978719,"about_ca_system_score_codex":0.000051665833,"about_ca_system_score_gemma":0.00004953351,"threshold_uncertainty_score":0.4155888},"labels":[],"label_agreement":null},{"id":"W2610160369","doi":"10.1016/j.lfs.2017.04.025","title":"Toll like receptor 4 and hepatocellular carcinoma; A systematic review","year":2017,"lang":"en","type":"review","venue":"Life Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":59,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Zabol University of Medical Sciences","keywords":"Hepatocellular carcinoma; Toll-like receptor; Cancer research; Receptor; Toll; Medicine; Internal medicine; Biology; Oncology; Immunology; Innate immune system","score_opus":0.08262321824551995,"score_gpt":0.33071042637360126,"score_spread":0.24808720812808133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2610160369","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000026452199,0.9964853,0.0000020165594,0.000101616366,0.00089055876,0.0017236857,0.000012061072,0.000035030087,0.0007233021],"genre_scores_gemma":[0.00004497529,0.9945483,0.000016567383,0.00014619618,0.000035831825,0.00021312096,0.00006348188,0.000013319092,0.0049181967],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99730396,0.000950811,0.00086606015,0.0004640105,0.000080773934,0.0003343841],"domain_scores_gemma":[0.9980017,0.00029270127,0.0009823478,0.00064150064,0.000045834666,0.00003589465],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0020470887,0.00034332223,0.0023966176,0.00018014295,0.0006858916,0.000079598314,0.0008461485,0.00033610818,0.00017885248],"category_scores_gemma":[0.0010000668,0.00021687971,0.00031309098,0.0001628789,0.0005914273,0.00020631465,0.00017989395,0.00027202684,0.0016357368],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000025941943,0.000011379864,0.000008348433,0.9668263,0.00011646599,0.0000047302506,0.00005714853,2.2130529e-9,0.000016580683,0.0001672782,0.0050260816,0.027763065],"study_design_scores_gemma":[0.000053996948,0.000054764736,5.860829e-7,0.28250882,0.0007741986,0.00012608389,0.000016582775,5.518912e-7,0.000008771587,0.000004170074,0.7162474,0.00020407853],"about_ca_topic_score_codex":0.000025914858,"about_ca_topic_score_gemma":9.815973e-7,"teacher_disagreement_score":0.71122134,"about_ca_system_score_codex":0.000026902906,"about_ca_system_score_gemma":0.0005182423,"threshold_uncertainty_score":0.99914163},"labels":[],"label_agreement":null},{"id":"W2611155373","doi":"10.1139/bcb-2016-0210","title":"<i>TLR2</i> affects <i>CD86</i> expression and inflammatory response in burn injury mice through regulation of <i>p38</i>","year":2017,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"TLR2; Agonist; CD86; TUNEL assay; Western blot; p38 mitogen-activated protein kinases; Tumor necrosis factor alpha; Inflammation; Chemistry; Apoptosis; Signal transduction; Pharmacology; Biology; Immunology; Receptor; Cell biology; TLR4; Biochemistry; MAPK/ERK pathway; Immune system","score_opus":0.0058818922498678,"score_gpt":0.22864344102828354,"score_spread":0.22276154877841575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2611155373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99234074,0.004855177,0.000014064714,0.00014726486,0.00017084152,0.00015786366,0.000019351979,0.00001873712,0.0022759472],"genre_scores_gemma":[0.99817204,0.0007406306,0.000054303517,0.000056260604,0.000028434195,0.000015757032,0.00006692808,0.000009677223,0.0008559512],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99879575,0.00029710523,0.00031121643,0.00033164726,0.000022280752,0.00024203028],"domain_scores_gemma":[0.99894214,0.00020715111,0.0003625022,0.00043014216,0.00003831603,0.000019727047],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051638746,0.00018674645,0.0002862332,0.00004968608,0.0002401463,0.00001626583,0.00018591527,0.00057861715,0.000030547675],"category_scores_gemma":[0.00019205087,0.00016997599,0.000042231724,0.00003407506,0.00055938674,0.0001574484,0.00019167349,0.00020681838,0.0000093237195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035894688,0.000040590796,0.0039795963,0.00010810028,0.000012354556,0.0000021022822,0.00024500178,3.83114e-7,0.9903958,0.00007595674,0.00029383355,0.0012568075],"study_design_scores_gemma":[0.0013548277,0.00019150312,0.012317463,0.00010728184,0.000011236366,0.00001984189,0.000112803194,0.0000017593104,0.97441846,0.00016781282,0.011120855,0.00017615226],"about_ca_topic_score_codex":0.00002841729,"about_ca_topic_score_gemma":0.0000015796666,"teacher_disagreement_score":0.01597734,"about_ca_system_score_codex":0.000015820551,"about_ca_system_score_gemma":0.000055241733,"threshold_uncertainty_score":0.69314194},"labels":[],"label_agreement":null},{"id":"W2612562059","doi":"10.3389/fimmu.2017.00530","title":"CXCL9-Derived Peptides Differentially Inhibit Neutrophil Migration In Vivo through Interference with Glycosaminoglycan Interactions","year":2017,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"CXCL9; Chemistry; Glycosaminoglycan; Chemokine; Chondroitin sulfate; In vivo; Heparan sulfate; Cell biology; Chemokine receptor; Pharmacology; Biochemistry; Receptor; Biology","score_opus":0.01181247463907709,"score_gpt":0.23589587483191962,"score_spread":0.22408340019284254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2612562059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9868381,0.0013431676,0.0055519226,0.0014250046,0.0025576865,0.0003663373,0.000008974221,0.00005550524,0.0018533216],"genre_scores_gemma":[0.99650913,0.0008257403,0.00087972987,0.00008201278,0.000030529533,0.000110081615,0.0000834636,0.000025891813,0.001453426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99807113,0.00035913257,0.00056009344,0.00045046743,0.00004015232,0.00051899406],"domain_scores_gemma":[0.99864507,0.00006929037,0.0004060166,0.00078769936,0.00007978941,0.000012117652],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00015891396,0.00030511917,0.0005222469,0.00042397087,0.00038091184,0.000079612415,0.00061711826,0.00033261784,0.00019694705],"category_scores_gemma":[0.00015502499,0.00027513987,0.00008038104,0.00012802551,0.0006991428,0.00082247035,0.00019445349,0.00071022543,0.00007899401],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003605825,0.00021941008,0.04215558,0.000016881117,0.00024342364,0.000036001544,0.002923111,0.000016872547,0.9413541,0.0004898774,0.0027064183,0.006232505],"study_design_scores_gemma":[0.0064526917,0.0008894804,0.3449503,0.00045293494,0.000059628775,0.00016298574,0.0023254142,0.00008479272,0.61771095,0.0014938703,0.024752283,0.0006646698],"about_ca_topic_score_codex":0.0013849572,"about_ca_topic_score_gemma":0.0044868696,"teacher_disagreement_score":0.32364312,"about_ca_system_score_codex":0.00018272028,"about_ca_system_score_gemma":0.00011384924,"threshold_uncertainty_score":0.9999701},"labels":[],"label_agreement":null},{"id":"W2614500237","doi":"10.1038/s41598-017-01513-w","title":"Lack of inflammatory gene expression in bats: a unique role for a transcription repressor","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":122,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Wildlife Health Cooperative; University of Saskatchewan","keywords":"Biology; Repressor; Interferon; RNA; Gene; Gene expression; Inflammation; Transcription (linguistics); Tumor necrosis factor alpha; Receptor; Molecular biology; Cell biology; Immunology; Genetics","score_opus":0.025529146385783612,"score_gpt":0.2808963822931258,"score_spread":0.25536723590734217,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2614500237","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99503934,0.00064885395,0.00040167966,0.00009038368,0.0026409468,0.000534466,0.000003653273,0.000024276354,0.0006164256],"genre_scores_gemma":[0.9950423,0.000015177837,0.0002708509,0.0000054284274,0.000014978792,0.00009008139,0.00010197676,0.000009504287,0.0044496683],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99864316,0.00010868196,0.00059381896,0.00038421067,0.00005465782,0.0002154738],"domain_scores_gemma":[0.9981288,0.000035163648,0.00061434857,0.0010657429,0.00014305385,0.000012916939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018382947,0.00009931968,0.00021048303,0.00018085724,0.00038152668,0.00006125586,0.00019022953,0.00018597225,0.00006964786],"category_scores_gemma":[0.00042761906,0.00008939203,0.000100952915,0.00005217426,0.00027524092,0.00035609736,0.00005003428,0.00008494867,0.000011110425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023237136,0.000048856837,0.0022893634,0.000042047326,0.000011923155,0.000013213602,0.00088084827,0.000015169408,0.99327844,0.0000710019,0.0013844704,0.0017323017],"study_design_scores_gemma":[0.0005002204,0.0000335552,0.008824327,0.00011563428,0.000011712293,0.00004490289,0.00009267299,0.00001549083,0.9533586,0.002670985,0.034240182,0.0000917216],"about_ca_topic_score_codex":0.000034638255,"about_ca_topic_score_gemma":0.00003640345,"teacher_disagreement_score":0.03991984,"about_ca_system_score_codex":0.000026579986,"about_ca_system_score_gemma":0.00011511603,"threshold_uncertainty_score":0.36453012},"labels":[],"label_agreement":null},{"id":"W2616469279","doi":"10.1016/j.ymeth.2017.05.004","title":"Measurement of bacterial capture and phagosome maturation of Kupffer cells by intravital microscopy","year":2017,"lang":"en","type":"article","venue":"Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":43,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"International Osteoporosis Foundation; FP7 People: Marie-Curie Actions; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Phagolysosome; Phagocytosis; Phagosome; Bacteria; Microbiology; Cell biology; Intravital microscopy; Biology; Macrophage; Phagocyte; Fluorescence microscope; Context (archaeology); Chemistry; In vivo; Biochemistry; In vitro; Fluorescence","score_opus":0.016409009779950214,"score_gpt":0.3177936293089065,"score_spread":0.3013846195289563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2616469279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866821,0.003246572,0.00853731,0.00010990163,0.0009801835,0.00016733602,0.000030736446,0.000007449228,0.00023839965],"genre_scores_gemma":[0.9929786,0.000059094535,0.0064674686,0.00001179692,0.000019296125,0.000004746842,0.000036688474,0.0000070375577,0.00041532618],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910307,0.00039534294,0.00024371553,0.00011131908,0.000029947307,0.00011662877],"domain_scores_gemma":[0.99932706,0.00004699678,0.0002740353,0.0002509027,0.00009367153,0.0000073211268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000972115,0.00008798574,0.000223529,0.000036937803,0.00010961612,0.000015293957,0.00011845903,0.00017092018,0.00012362812],"category_scores_gemma":[0.00015997035,0.00007386165,0.00003895041,0.000014092821,0.00013997057,0.00012081221,0.000050413226,0.00009103338,0.0000064584315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005015862,0.000033171407,0.000058915146,0.000035480192,0.000071385875,1.12839686e-7,0.0004114912,6.0044854e-8,0.98803014,0.00007632389,0.0008931,0.009888243],"study_design_scores_gemma":[0.00082824216,0.00008845654,0.0045793494,0.000029901521,0.000039197053,0.0000040406544,0.000057870737,0.0000015645347,0.9825091,0.000052828396,0.011741864,0.000067580855],"about_ca_topic_score_codex":0.0000549927,"about_ca_topic_score_gemma":0.0000030798692,"teacher_disagreement_score":0.010848764,"about_ca_system_score_codex":0.00001284343,"about_ca_system_score_gemma":0.000025646426,"threshold_uncertainty_score":0.30119908},"labels":[],"label_agreement":null},{"id":"W2616728660","doi":"10.1016/j.celrep.2017.04.063","title":"Innate Recognition of Intracellular Bacterial Growth Is Driven by the TIFA-Dependent Cytosolic Surveillance Pathway","year":2017,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":63,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; University of Toronto","funders":"Canadian Institutes of Health Research; Agence Nationale de la Recherche","keywords":"Biology; Cytosol; Shigella flexneri; Intracellular; Cell biology; Shigella; Microbiology; Bacteria; Proinflammatory cytokine; Peptidoglycan; Inflammation; NOD1; Innate immune system; Immunology; Escherichia coli; Immune system; Biochemistry; NOD2; Salmonella; Enzyme","score_opus":0.010648053596048352,"score_gpt":0.21004776818507873,"score_spread":0.19939971458903039,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2616728660","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935523,0.0007678411,0.000046448506,0.00027840133,0.0012343639,0.00023413658,0.000025451709,0.000022836715,0.0038381813],"genre_scores_gemma":[0.9957967,0.00024230643,0.000006853946,0.00003419354,0.00005079114,0.00001643666,0.00030321424,0.0000139141775,0.003535629],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988282,0.00019915287,0.0004744835,0.00023320163,0.00005404298,0.00021096112],"domain_scores_gemma":[0.99824256,0.00005857686,0.0008860518,0.00065197586,0.0001480615,0.000012754349],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00061162474,0.00013456882,0.00022378846,0.00003695478,0.0003452418,0.000041960426,0.00021073104,0.00020431232,0.00054834515],"category_scores_gemma":[0.00020471397,0.00010142543,0.00008599523,0.000026943551,0.00018571042,0.00014645877,0.000098481134,0.00017981221,0.00018724936],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000119807504,0.000046092737,0.002021173,0.00001882983,0.000045091732,0.00003371579,0.00029716347,1.8331117e-7,0.9885531,0.000008187527,0.0029660068,0.005890657],"study_design_scores_gemma":[0.00038966825,0.000060023292,0.0061237765,0.00002004276,0.000014953452,0.00015405148,0.000024938161,0.0000016181212,0.97024107,0.00020366049,0.022644056,0.00012211276],"about_ca_topic_score_codex":0.00016344685,"about_ca_topic_score_gemma":0.000011535815,"teacher_disagreement_score":0.019678049,"about_ca_system_score_codex":0.000020961443,"about_ca_system_score_gemma":0.00006849466,"threshold_uncertainty_score":0.6003995},"labels":[],"label_agreement":null},{"id":"W2620786451","doi":"10.11606/t.46.2017.tde-11042017-082711","title":"Vias de transdução de sinal e polimorfismo de &lt;i&gt;Toll-like Receptors&lt;/i&gt; na carcinogenese por HPV","year":2017,"lang":"pt","type":"dissertation","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Cancer Institute; Canadian Institutes of Health Research; McGill University; Fundação de Amparo à Pesquisa do Estado de São Paulo; Universidade do Minho; Ludwig Institute for Cancer Research","keywords":"Molecular biology; Biology; Receptor; Genetics","score_opus":0.013488792271009634,"score_gpt":0.2641589184527575,"score_spread":0.2506701261817479,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620786451","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94816136,0.01855959,0.001852677,0.0006467827,0.0059969877,0.0013612463,0.00013579427,0.00027954494,0.02300602],"genre_scores_gemma":[0.75071853,0.0045287125,0.00026604393,0.00039434037,0.00027208036,0.00018394428,0.006212261,0.00018688505,0.2372372],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9922862,0.0023599514,0.0015022164,0.0011850782,0.00023233754,0.0024342074],"domain_scores_gemma":[0.9960979,0.00049691723,0.0010897589,0.0015380098,0.0005069153,0.0002704816],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.0023360397,0.0013726229,0.0015442536,0.0008332141,0.0018061288,0.00020984805,0.0015033069,0.0040751225,0.0083438475],"category_scores_gemma":[0.00046843506,0.0014037254,0.0010435849,0.00026573398,0.00051286706,0.0004989748,0.000085916174,0.0014035497,0.0021191644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0059415717,0.00037981535,0.00073845393,0.00051700306,0.0012548353,0.000118277094,0.0102969585,0.000018147568,0.948406,0.0023331016,0.010120834,0.01987502],"study_design_scores_gemma":[0.004521837,0.0010509552,0.051102314,0.00064673176,0.0014423751,0.0010665176,0.002161432,0.00015357738,0.72629696,0.00024150827,0.20917855,0.002137263],"about_ca_topic_score_codex":0.0011994627,"about_ca_topic_score_gemma":0.0014166018,"teacher_disagreement_score":0.22210905,"about_ca_system_score_codex":0.0009411236,"about_ca_system_score_gemma":0.0035646341,"threshold_uncertainty_score":0.9999024},"labels":[],"label_agreement":null},{"id":"W2620877422","doi":"10.1016/j.bbi.2017.05.020","title":"Live imaging of the innate immune response in neonates reveals differential TLR2 dependent activation patterns in sterile inflammation and infection","year":2017,"lang":"en","type":"article","venue":"Brain Behavior and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut Universitaire en Santé Mentale de Québec","funders":"National Institute of Neurological Disorders and Stroke","keywords":"TLR2; Inflammation; Innate immune system; Microglia; Biology; Immunology; Chemokine; Immune system; Neuroinflammation; In vivo; Genetically modified mouse; Cell biology; Neuroscience; Transgene","score_opus":0.013300821087968031,"score_gpt":0.26403055875289433,"score_spread":0.2507297376649263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620877422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99878585,0.00016097682,0.000023459006,0.00035208254,0.00020492508,0.0004412341,0.000008784496,0.000009770469,0.0000128938855],"genre_scores_gemma":[0.9995873,0.00012613319,0.000002721511,0.000010654495,0.000008019356,0.000050040857,0.00004035422,0.000009123785,0.0001656589],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9983087,0.00091641094,0.0004090008,0.0001532749,0.00004319167,0.0001694186],"domain_scores_gemma":[0.999001,0.00018657181,0.00035126583,0.00039896945,0.000053728647,0.000008435291],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00092055096,0.00013825067,0.00020847203,0.00019593535,0.00036618861,0.000056278415,0.00016027704,0.00014431508,0.000042959826],"category_scores_gemma":[0.00051032857,0.00011674819,0.000039451243,0.00005298805,0.00017157616,0.00040324673,0.00027126886,0.00032554934,0.0000020967732],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00087096286,0.000042072184,0.35565433,0.000014479085,0.0000061337305,7.249031e-7,0.0013149388,9.2095996e-7,0.6305639,0.000010099559,0.0000015902116,0.011519812],"study_design_scores_gemma":[0.0012586748,0.000059581107,0.7351825,0.00015866247,0.000012380569,0.0000137780835,0.00028467758,0.000009961663,0.26288065,0.000034528548,0.00001762954,0.000086955544],"about_ca_topic_score_codex":0.0040672896,"about_ca_topic_score_gemma":0.0003006225,"teacher_disagreement_score":0.3795282,"about_ca_system_score_codex":0.000048189224,"about_ca_system_score_gemma":0.00002911666,"threshold_uncertainty_score":0.61485523},"labels":[],"label_agreement":null},{"id":"W2620971443","doi":"10.3390/nu9060567","title":"Feeding a Mixture of Choline Forms to Lactating Dams Improves the Development of the Immune System in Sprague-Dawley Rat Offspring","year":2017,"lang":"en","type":"article","venue":"Nutrients","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Environmental Health Sciences; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Killam Trusts; Dairy Farmers of Canada","keywords":"Offspring; Choline; Lactation; Immune system; Weaning; Endocrinology; Internal medicine; Biology; Phosphatidylcholine; Lipopolysaccharide; Stimulation; Immunology; Medicine; Phospholipid; Biochemistry; Pregnancy","score_opus":0.011523598629682798,"score_gpt":0.25323949062597706,"score_spread":0.24171589199629426,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2620971443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99766344,0.00046448034,0.00006646979,0.0001606368,0.0007268457,0.00045137093,0.0000018544551,0.000009899178,0.00045499168],"genre_scores_gemma":[0.9995464,0.00000610537,0.00011274895,0.000009973558,0.000014008419,0.00002882344,0.000005301191,0.000009055081,0.00026759756],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989471,0.00008488068,0.00055286253,0.00013188712,0.00006276532,0.00022049094],"domain_scores_gemma":[0.9988519,0.00007083486,0.0005185928,0.00046772376,0.00008283357,0.000008107392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00074857275,0.00011487676,0.00024260055,0.000073708725,0.00039431537,0.000019630159,0.0005726747,0.000115464376,0.0000042936754],"category_scores_gemma":[0.00031652802,0.00006456784,0.00006752808,0.00009921686,0.00007623579,0.00013271926,0.00029957778,0.00019517141,0.000015745027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024460556,0.000037254857,0.0070407754,0.00009197181,0.00004670189,2.6548074e-7,0.004515035,0.0000034190612,0.9782943,0.00034513057,0.000012400141,0.009368146],"study_design_scores_gemma":[0.0009282572,0.0000273471,0.15399277,0.0005213859,0.000009643803,0.0000030148508,0.0014408721,0.0000118322705,0.8413439,0.0000074323375,0.0016482844,0.00006529575],"about_ca_topic_score_codex":0.00008683774,"about_ca_topic_score_gemma":0.000040156687,"teacher_disagreement_score":0.14695199,"about_ca_system_score_codex":0.00006394538,"about_ca_system_score_gemma":0.0000641025,"threshold_uncertainty_score":0.3032795},"labels":[],"label_agreement":null},{"id":"W2622269495","doi":"10.1159/000475982","title":"Novel Insights into the Direct Removal of Endotoxin by Polymyxin B Hemoperfusion","year":2017,"lang":"en","type":"article","venue":"Blood Purification","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":64,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Hemoperfusion; Chromatography; Chemistry; Polymyxin B; Lipopolysaccharide; Perfusion; Pharmacology; Biochemistry; Medicine; Immunology; Internal medicine; Antibiotics","score_opus":0.010026786577156294,"score_gpt":0.22926794670986247,"score_spread":0.21924116013270617,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2622269495","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9826537,0.007670915,0.0001883408,0.001097042,0.00029214736,0.00028757297,0.0000044842686,0.000029961926,0.0077758445],"genre_scores_gemma":[0.9926025,0.00041945957,0.00010640456,0.000038517064,0.000030595733,0.000028680923,0.00011596762,0.000009816858,0.0066480027],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992055,0.00013393241,0.00028885668,0.00018741227,0.000047708952,0.00013656869],"domain_scores_gemma":[0.99865055,0.00008459741,0.00036890322,0.0008067769,0.00008028656,0.000008887791],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032857465,0.00010975938,0.0001527566,0.0000562696,0.00063938857,0.000031624455,0.00044111337,0.00016721894,0.00006549647],"category_scores_gemma":[0.00024073702,0.000076569595,0.000062075764,0.000049949474,0.00020302946,0.00018577972,0.00006671759,0.00012838136,0.00010777817],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001143554,0.00013574149,0.00010371702,0.0000065837853,0.000053867236,6.123686e-7,0.0010713801,3.5761087e-7,0.9811617,0.0010962944,0.00069371145,0.01556168],"study_design_scores_gemma":[0.00077800575,0.000058033525,0.0054646386,0.000020017886,0.000045501612,0.000032913013,0.00007755414,0.000008105234,0.889935,0.000054232438,0.103443846,0.00008211543],"about_ca_topic_score_codex":0.0005671545,"about_ca_topic_score_gemma":0.000020886782,"teacher_disagreement_score":0.10275013,"about_ca_system_score_codex":0.000012243652,"about_ca_system_score_gemma":0.000044161992,"threshold_uncertainty_score":0.49177247},"labels":[],"label_agreement":null},{"id":"W2624070386","doi":"10.1016/j.vaccine.2017.05.067","title":"A novel combination adjuvant platform for human and animal vaccines","year":2017,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Saskatchewan Health Research Foundation; Canadian Institutes of Health Research; Krembil Foundation; Alberta Livestock and Meat Agency; Natural Sciences and Engineering Research Council of Canada; Bill and Melinda Gates Foundation","keywords":"Adjuvant; Immunogenicity; Immunization; CpG Oligodeoxynucleotide; Antigen; Immunology; Immune system; Immunity; Biology; Medicine; Virology","score_opus":0.02310627691317881,"score_gpt":0.2796740020068504,"score_spread":0.2565677250936716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2624070386","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971157,0.000562118,0.0003805337,0.00098591,0.00022532449,0.00029010396,0.000008859783,0.0000348559,0.00039660546],"genre_scores_gemma":[0.99775815,0.00003286067,0.00007413854,0.000036103942,0.00004084324,0.000029469444,0.00011573888,0.0000100863,0.0019026169],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9995016,0.000009356268,0.0001756319,0.000140941,0.000012809658,0.00015968492],"domain_scores_gemma":[0.9994696,0.000049266117,0.0001572646,0.0002448053,0.000070016904,0.000009058203],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019030113,0.00009793898,0.00016602631,0.00006717724,0.00070207205,0.000041097006,0.00013391126,0.00011608325,0.00008842887],"category_scores_gemma":[0.00012454606,0.000082573126,0.00003574388,0.000014264084,0.000011604684,0.00025372882,0.00006579817,0.000071229646,0.0000325696],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052518124,0.000054346296,0.0021822185,0.000019670302,0.000046484412,3.640047e-7,0.00011091272,1.0501622e-7,0.9780696,0.009338004,0.0013762768,0.008276855],"study_design_scores_gemma":[0.009457459,0.0007939048,0.5587458,0.000038713086,0.00005282699,0.00005770611,0.00008882587,0.000058041303,0.4035268,0.0011150041,0.025870392,0.00019451055],"about_ca_topic_score_codex":0.00007006679,"about_ca_topic_score_gemma":0.000044442924,"teacher_disagreement_score":0.57454276,"about_ca_system_score_codex":0.000009568591,"about_ca_system_score_gemma":0.000011597313,"threshold_uncertainty_score":0.53998417},"labels":[],"label_agreement":null},{"id":"W2730214486","doi":"","title":"The toll-like receptors as the primary sensors of the innate immune system","year":2000,"lang":"en","type":"article","venue":"Immunologist","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Toll; Innate immune system; Primary (astronomy); Receptor; Toll-like receptor; Immune system; Immunology; Biology; Genetics; Physics","score_opus":0.0052794723221316255,"score_gpt":0.202298548064267,"score_spread":0.19701907574213537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2730214486","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95674384,0.024494702,0.0000023115492,0.002597651,0.002811593,0.00057351915,0.000005674702,0.00009878613,0.01267192],"genre_scores_gemma":[0.9409145,0.00184684,0.000003966128,0.00013489446,0.000026784994,0.000056229303,0.000026880809,0.000021151407,0.056968726],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973503,0.0012513066,0.0006594927,0.00022166372,0.00008578275,0.00043145506],"domain_scores_gemma":[0.9978265,0.00048760234,0.0003315125,0.0012494719,0.0000980451,0.000006847967],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010578446,0.0002327087,0.00029830748,0.000043022173,0.0014209126,0.000042817206,0.0011455069,0.00028842126,0.00032557308],"category_scores_gemma":[0.00017553629,0.000105769956,0.00025557465,0.00029288142,0.0015932294,0.0000789568,0.00020654204,0.0005502211,0.0013508489],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029993816,0.000114841925,0.0002761557,0.00005528597,0.0010351299,0.000008811865,0.0021001983,0.0001246528,0.8574576,0.006812802,0.006661348,0.12235384],"study_design_scores_gemma":[0.00087227137,0.00018321894,0.02133242,0.00011452696,0.000064225176,0.00040876018,0.002082487,0.000004805323,0.34582415,0.00006182263,0.62884766,0.0002036735],"about_ca_topic_score_codex":0.00048054548,"about_ca_topic_score_gemma":0.00001090547,"teacher_disagreement_score":0.6221863,"about_ca_system_score_codex":0.00010994327,"about_ca_system_score_gemma":0.00013363703,"threshold_uncertainty_score":0.9998791},"labels":[],"label_agreement":null},{"id":"W2732383228","doi":"10.1371/journal.pone.0180073","title":"Combination of poly I:C and Pam3CSK4 enhances activation of B cells in vitro and boosts antibody responses to protein vaccines in vivo","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen Elizabeth II Health Sciences Centre; Immunovaccine (Canada); Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada; Dalhousie University","keywords":"TLR2; Antigen; Antibody; TLR3; Adjuvant; Immune system; Biology; T cell; Antigen-presenting cell; Toll-like receptor; Immunology; Innate immune system","score_opus":0.017417108701273547,"score_gpt":0.2539976870163661,"score_spread":0.23658057831509255,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2732383228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99865806,0.000454105,0.000008764018,0.0003712925,0.000016414988,0.00040899182,0.0000069883727,0.000004636864,0.00007077246],"genre_scores_gemma":[0.99934465,0.0001209541,0.00011351866,0.000007977051,0.0000033605793,0.000019006959,0.000008573053,0.0000044171175,0.0003775365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993742,0.00014613882,0.00023923151,0.0001143014,0.00003075536,0.00009539055],"domain_scores_gemma":[0.9994794,0.00010762642,0.00019853728,0.00015191882,0.000056508892,0.0000059913627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029081592,0.00006830315,0.00021809633,0.0002255543,0.000052536903,0.000008988548,0.00007191602,0.000092127244,0.000011956887],"category_scores_gemma":[0.00034804476,0.00006595162,0.000009347755,0.00005227704,0.000058293823,0.00021339006,0.000048272286,0.000066049484,0.000002249491],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026286507,0.00030552121,0.007551171,0.0000946428,0.000026927779,3.9388496e-7,0.0006229869,6.094195e-8,0.986665,0.00006113502,0.0000024020212,0.0020411203],"study_design_scores_gemma":[0.0008518346,0.00019786565,0.19318654,0.00029805623,0.000006905631,3.6906917e-7,0.00006848917,0.00000571547,0.80525523,0.00006507433,0.000013062538,0.000050835115],"about_ca_topic_score_codex":0.00026673503,"about_ca_topic_score_gemma":0.000028079701,"teacher_disagreement_score":0.18563537,"about_ca_system_score_codex":0.000010595854,"about_ca_system_score_gemma":0.00002117763,"threshold_uncertainty_score":0.26894292},"labels":[],"label_agreement":null},{"id":"W2732715425","doi":"10.1038/cdd.2017.112","title":"Culling of APCs by inflammatory cell death pathways restricts TIM3 and PD-1 expression and promotes the survival of primed CD8 T cells","year":2017,"lang":"en","type":"article","venue":"Cell Death and Differentiation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada; University of Ottawa","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; Genentech; National Institutes of Health","keywords":"Priming (agriculture); Cell biology; Cytotoxic T cell; CD8; Programmed cell death; Pyroptosis; Biology; T cell; Apoptosis; Immunology; Immune system","score_opus":0.014080283696813863,"score_gpt":0.20984991541318032,"score_spread":0.19576963171636647,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2732715425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.995287,0.0033862025,0.00044179807,0.000018952243,0.00015663798,0.00028904164,0.000015135472,0.000012098851,0.00039313012],"genre_scores_gemma":[0.99791825,0.0015228593,0.00005453156,0.0000040850227,0.000013638731,0.0000059281133,0.00009499495,0.000009875639,0.00037586645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990993,0.00018212362,0.00030546598,0.00019516484,0.000053583164,0.00016436097],"domain_scores_gemma":[0.99900085,0.00016744218,0.0004636097,0.00028070938,0.000063648375,0.000023723589],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00025913471,0.00014964686,0.00023148308,0.000060292103,0.00036840487,0.000040777017,0.00011914473,0.00019655608,0.000010917988],"category_scores_gemma":[0.00005678383,0.00010620441,0.000034443045,0.000018862696,0.0001300277,0.00015642267,0.00011582131,0.00012703058,0.0000031746915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016254169,0.00004768862,0.016153427,0.00015730158,0.000016745738,3.5056e-7,0.00072714046,5.207491e-7,0.9813418,0.00012358683,0.000055081466,0.0012138436],"study_design_scores_gemma":[0.0011054324,0.00010721253,0.09986949,0.0000633848,0.000052857013,0.0000013057556,0.00011225654,0.00012015446,0.8980958,0.00018699878,0.00018388711,0.00010124158],"about_ca_topic_score_codex":0.000047905025,"about_ca_topic_score_gemma":0.0000023457383,"teacher_disagreement_score":0.083716065,"about_ca_system_score_codex":0.0000068924674,"about_ca_system_score_gemma":0.000027872276,"threshold_uncertainty_score":0.43308902},"labels":[],"label_agreement":null},{"id":"W2734603799","doi":"10.1021/acs.jafc.7b02109","title":"Intervention of Dietary Dipeptide Gamma-<scp>l</scp>-Glutamyl-<scp>l</scp>-Valine (γ-EV) Ameliorates Inflammatory Response in a Mouse Model of LPS-Induced Sepsis","year":2017,"lang":"en","type":"article","venue":"Journal of Agricultural and Food Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Sepsis; Dipeptide; Inflammation; Immune system; Chemistry; Receptor; Signal transduction; Phosphorylation; Pharmacology; Peptide; Immunology; Medicine; Biochemistry","score_opus":0.01699769866099588,"score_gpt":0.23700316399375176,"score_spread":0.2200054653327559,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2734603799","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99722964,0.0021475647,0.000008339781,0.00013204236,0.00014124435,0.00012351607,0.000037999635,0.000012216089,0.00016742475],"genre_scores_gemma":[0.9970034,0.0004980953,0.0000682865,0.000009177853,0.00007789268,0.000006078747,0.000031756554,0.000012812744,0.0022925462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979667,0.00019755661,0.0012031009,0.00020375059,0.00012654904,0.00030231575],"domain_scores_gemma":[0.9968541,0.00037751446,0.0019964569,0.00029395192,0.00042041412,0.000057559933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007835814,0.00028679933,0.00066190236,0.00012616957,0.00015320342,0.00003975734,0.0004225274,0.00041793525,0.000008211913],"category_scores_gemma":[0.0013537303,0.00019840921,0.0003549688,0.0000923155,0.00021208047,0.0005323745,0.00013976198,0.0005522956,0.0000040045447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005962102,0.00021139486,0.0018983758,0.00024279954,0.00033671196,0.0000042148977,0.0012970545,0.00017362474,0.9942891,0.0000039985553,0.0005056977,0.0004408101],"study_design_scores_gemma":[0.0019913232,0.0006441165,0.11037285,0.0004575529,0.00008385885,0.000120484394,0.0032404063,0.000023326327,0.88282174,0.000056181518,0.000116481526,0.000071677125],"about_ca_topic_score_codex":0.000020443811,"about_ca_topic_score_gemma":0.000009099302,"teacher_disagreement_score":0.11146737,"about_ca_system_score_codex":0.000057112757,"about_ca_system_score_gemma":0.00008725797,"threshold_uncertainty_score":0.8090893},"labels":[],"label_agreement":null},{"id":"W2737868829","doi":"10.3389/fphys.2017.00508","title":"Inhibition of Toll-Like Receptor Signaling as a Promising Therapy for Inflammatory Diseases: A Journey from Molecular to Nano Therapeutics","year":2017,"lang":"en","type":"review","venue":"Frontiers in Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":351,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Shanghai General Hospital; Crohn's and Colitis Foundation of Canada; Program for Professor of Special Appointment (Eastern Scholar) at Shanghai Institutions of Higher Learning; National Natural Science Foundation of China; Crohn's and Colitis Foundation","keywords":"Toll-like receptor; Receptor; Medicine; Inflammation; Signal transduction; Bioinformatics; Pharmacology; Computational biology; Immunology; Biology; Cell biology; Internal medicine; Innate immune system","score_opus":0.0335664284092887,"score_gpt":0.3131000186628145,"score_spread":0.2795335902535258,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2737868829","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028242745,0.96579915,0.0009265658,0.000032735716,0.002415701,0.0023399827,0.00018348968,0.000033991328,0.000025609308],"genre_scores_gemma":[0.0018029332,0.9939548,0.0010011281,0.00016775289,0.00014129624,0.0007003253,0.0019165281,0.00009398452,0.00022125444],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969259,0.00093808485,0.0010339417,0.00057531317,0.000054657758,0.00047209393],"domain_scores_gemma":[0.99783343,0.00024278743,0.0010584426,0.00070751953,0.00012465127,0.000033184882],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034173415,0.0004984236,0.0021188734,0.0005037033,0.00018388515,0.00002556906,0.0005106827,0.00095160573,0.000060109756],"category_scores_gemma":[0.00012878062,0.0004335936,0.0006249054,0.0001266831,0.00021985454,0.00013238945,0.00010603078,0.00040957626,0.000063933265],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017135135,0.00013463221,0.0000070765636,0.001358314,0.0012549752,0.00000435806,0.0007392149,0.0000074593463,0.43848428,0.00006310139,0.0018851352,0.55434793],"study_design_scores_gemma":[0.0016508806,0.00044030097,0.00001539552,0.005414573,0.0003702363,0.000005386778,0.00015629776,0.0000023717434,0.033147838,0.0015026561,0.9567937,0.0005003206],"about_ca_topic_score_codex":0.000026673797,"about_ca_topic_score_gemma":0.0000011575032,"teacher_disagreement_score":0.9549086,"about_ca_system_score_codex":0.00016201481,"about_ca_system_score_gemma":0.0005558059,"threshold_uncertainty_score":0.9998116},"labels":[],"label_agreement":null},{"id":"W2738956768","doi":"10.3791/56075","title":"Screening Bioactive Nanoparticles in Phagocytic Immune Cells for Inhibitors of Toll-like Receptor Signaling","year":2017,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Shanghai General Hospital; Crohn's and Colitis Foundation of Canada; Program for Professor of Special Appointment (Eastern Scholar) at Shanghai Institutions of Higher Learning; Crohn's and Colitis Foundation","keywords":"Reporter gene; Luciferase; Cell biology; Toll-like receptor; Biology; Immune system; Signal transduction; Cell culture; Innate immune system; Transfection; Chemistry; Gene expression; Immunology; Gene; Biochemistry","score_opus":0.032985868921810144,"score_gpt":0.38785584757153263,"score_spread":0.3548699786497225,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2738956768","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99500537,0.0030652697,0.0004655761,0.00006251177,0.001107609,0.0002539581,0.000004567464,0.0000055523697,0.000029559884],"genre_scores_gemma":[0.998284,0.00008102828,0.0013519754,0.00001580794,0.000047252888,0.000012194033,0.000005788671,0.000016944086,0.00018501014],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984025,0.00020902991,0.00093702355,0.00012136129,0.000076067394,0.00025403436],"domain_scores_gemma":[0.99803627,0.00016350567,0.0014142406,0.00020604319,0.00015809588,0.000021843289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00081284257,0.00014789513,0.0004883164,0.00023654751,0.00021667808,0.000033811582,0.00029603497,0.00014786058,0.000089158624],"category_scores_gemma":[0.00018979394,0.00012856394,0.00021087902,0.000051246672,0.00013662508,0.00044570927,0.00006508209,0.00015569704,0.000012370257],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0038947356,0.00021610565,0.00027575702,0.000018108463,0.0002400751,0.0000036403685,0.002002741,0.000014950076,0.9910085,0.000035374473,0.0001768475,0.0021131276],"study_design_scores_gemma":[0.0066086175,0.00057201,0.00047600752,0.00033234645,0.000038321305,0.000012712134,0.001689203,0.000017985387,0.98832744,0.000025622245,0.0017755044,0.00012425185],"about_ca_topic_score_codex":0.000047171703,"about_ca_topic_score_gemma":6.699328e-7,"teacher_disagreement_score":0.0032786028,"about_ca_system_score_codex":0.000072960225,"about_ca_system_score_gemma":0.00008332355,"threshold_uncertainty_score":0.5242685},"labels":[],"label_agreement":null},{"id":"W2745648472","doi":"10.1038/s41598-017-09909-4","title":"Expression and role of VLA-1 in resident memory CD8 T cell responses to respiratory mucosal viral-vectored immunization against tuberculosis","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; McMaster University Medical Centre","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Respiratory system; Tuberculosis; Immunization; Virology; Immunology; Medicine; Biology; Pathology; Immune system; Internal medicine","score_opus":0.00891099262811296,"score_gpt":0.24122123552559832,"score_spread":0.23231024289748536,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2745648472","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943776,0.002056669,0.000008209161,0.00008940056,0.0017795844,0.0003936102,0.0000031223315,0.000027782342,0.0012640002],"genre_scores_gemma":[0.9966478,0.000033623182,0.000056164692,0.000022750433,0.000014861429,0.00002705568,0.00004900389,0.000014745346,0.0031340194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99797815,0.00040600632,0.0007025965,0.0005175205,0.00011977707,0.00027592454],"domain_scores_gemma":[0.9978067,0.00007986818,0.00057701254,0.0013377164,0.0001652578,0.0000334159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021890763,0.00015555299,0.00026733064,0.00047934303,0.00066494045,0.00013550457,0.00024225302,0.00019633515,0.0000639707],"category_scores_gemma":[0.0009490793,0.00014437267,0.00006144009,0.00014418263,0.00033586242,0.0004163873,0.00029518755,0.00015376524,0.00003856844],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003646784,0.000050112816,0.013298858,0.000022945216,0.000009395764,0.00003417568,0.0016690192,0.000020372132,0.981067,0.000008855715,0.0011320178,0.0023225844],"study_design_scores_gemma":[0.0003772142,0.00006085874,0.1051069,0.00012695433,0.000009871952,0.000016256268,0.00044376223,0.000004772294,0.8869033,0.00018831913,0.0066219233,0.00013988565],"about_ca_topic_score_codex":0.00016749669,"about_ca_topic_score_gemma":0.00004767518,"teacher_disagreement_score":0.0941637,"about_ca_system_score_codex":0.000053635555,"about_ca_system_score_gemma":0.00016267106,"threshold_uncertainty_score":0.5887347},"labels":[],"label_agreement":null},{"id":"W2748313123","doi":"10.1016/j.oooo.2017.06.020","title":"COMPOSITION OF IMMUNE CELL AGGREGATES AT THE INVASION FRONTS OF ORAL CANCER ASSOCIATED WITH CLINICAL OUTCOMES","year":2017,"lang":"en","type":"article","venue":"Oral Surgery Oral Medicine Oral Pathology and Oral Radiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria; University of British Columbia","funders":"","keywords":"Immune system; Cancer; Tumor microenvironment; Cancer cell; Cell; Biology; Immunology; Medicine; Cancer research; Internal medicine; Genetics","score_opus":0.04060457457748977,"score_gpt":0.31307778859962737,"score_spread":0.2724732140221376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2748313123","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9863262,0.0074997903,0.000025104724,0.0037511028,0.0017780454,0.00040881961,0.00006420654,0.000040377075,0.00010634305],"genre_scores_gemma":[0.99577326,0.0020314248,0.00006685165,0.0004476815,0.000040542545,0.00003318911,0.0005525117,0.0000311433,0.0010234168],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99462706,0.0025686717,0.0014959209,0.00054759416,0.000115877076,0.0006448677],"domain_scores_gemma":[0.9952713,0.0017206229,0.0019323908,0.0007406466,0.0002693186,0.00006571598],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0034489068,0.000458463,0.0023100846,0.00021604817,0.00069919217,0.000010519835,0.0004573551,0.00087895885,0.00059778563],"category_scores_gemma":[0.0012437274,0.00026663384,0.0002984481,0.00014219615,0.005258352,0.00026342255,0.00029271428,0.0006615304,0.000033541426],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042569158,0.00025130613,0.85632896,0.00004343015,0.0004784538,0.00011889893,0.00026218648,0.0000063172165,0.111968204,0.00008271338,0.004679743,0.02152287],"study_design_scores_gemma":[0.004613006,0.0016305987,0.9545791,0.00026962283,0.00046071,0.00030525905,0.00013048167,0.000013089141,0.03514967,0.00019511052,0.0023152577,0.00033807236],"about_ca_topic_score_codex":0.0018574089,"about_ca_topic_score_gemma":0.0010341357,"teacher_disagreement_score":0.098250166,"about_ca_system_score_codex":0.000060347014,"about_ca_system_score_gemma":0.0001343643,"threshold_uncertainty_score":0.9999786},"labels":[],"label_agreement":null},{"id":"W2752198291","doi":"10.3389/fimmu.2017.01075","title":"The Toll for Trafficking: Toll-Like Receptor 7 Delivery to the Endosome","year":2017,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":174,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Endosome; Toll; Toll-like receptor; Cell biology; Receptor; Chemistry; Biology; Immunology; Innate immune system; Biochemistry","score_opus":0.036189496863662435,"score_gpt":0.29751263666404876,"score_spread":0.26132313980038635,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752198291","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008309351,0.97282577,0.00043278048,0.0009578747,0.022334745,0.002930174,0.00007652342,0.00006452481,0.0002944966],"genre_scores_gemma":[0.0000319817,0.9810853,0.00024382505,0.00011227704,0.0001916096,0.0017059837,0.00045377554,0.00007893757,0.016096324],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9957748,0.0013221528,0.0011647606,0.00063292525,0.000056106783,0.001049254],"domain_scores_gemma":[0.99620456,0.0011562918,0.00078853086,0.0017239063,0.0001057276,0.000021014901],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014422582,0.0006186714,0.0019095582,0.00042798553,0.0014601606,0.00011308006,0.0025771784,0.0013142623,0.000048668666],"category_scores_gemma":[0.0007590176,0.00036925732,0.00076493976,0.00018185863,0.00061301736,0.0001319667,0.00037159576,0.0011510989,0.0009918187],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047733533,0.000030713556,0.0000015382454,0.00025275003,0.0009376414,0.0000031117513,0.00028576114,0.0000014505677,0.0000705113,0.00035178888,0.13858601,0.8590014],"study_design_scores_gemma":[0.0008056565,0.00024492515,0.000008631369,0.0011243974,0.00028165773,0.000092543305,0.00031236364,0.0000014079409,0.00012036615,0.000055224515,0.9965371,0.00041576187],"about_ca_topic_score_codex":0.000036949812,"about_ca_topic_score_gemma":0.000044538167,"teacher_disagreement_score":0.8585856,"about_ca_system_score_codex":0.00033545904,"about_ca_system_score_gemma":0.0005542473,"threshold_uncertainty_score":0.99998224},"labels":[],"label_agreement":null},{"id":"W2752845417","doi":"10.1139/cjpp-2017-0186","title":"Recombinant protein rMBP-NAP restricts tumor progression by triggering antitumor immunity in mouse metastatic lung cancer","year":2017,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Nap; Immune system; Cancer research; Cytotoxic T cell; Immunotherapy; Immunology; Melanoma; Cancer; Tumor progression; Lung cancer; Medicine; Biology; Pathology; Internal medicine; In vitro","score_opus":0.015035789695392963,"score_gpt":0.30593441041168035,"score_spread":0.29089862071628736,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2752845417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98721695,0.009992542,0.0000033006377,0.0009573744,0.0013767687,0.00036329866,0.000021743104,0.000005449803,0.000062555795],"genre_scores_gemma":[0.9986307,0.00060774374,0.000023086903,0.00014140132,0.000048863687,0.000031741863,0.000016587548,0.000014122903,0.00048574025],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804556,0.00072711345,0.00051245134,0.00018581674,0.000025303556,0.0005037474],"domain_scores_gemma":[0.9987762,0.0001028458,0.00070761103,0.00018771533,0.00011325099,0.00011240195],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006582653,0.0001912325,0.0005018146,0.0003249739,0.0006880995,0.000026097052,0.0004112349,0.00016167588,0.00074134313],"category_scores_gemma":[0.00015378871,0.0001623915,0.000070833674,0.000069658265,0.00048239258,0.00032439502,0.000051691786,0.000765478,0.000010353322],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00064053794,0.00005806297,0.002100865,0.000090725924,0.00017223404,0.00013330104,0.00025314442,0.00000806641,0.9913199,0.00006285299,0.0033889243,0.0017713738],"study_design_scores_gemma":[0.003310601,0.0003777345,0.013110332,0.00014812395,0.00007770414,0.00019057852,0.000060861268,0.000032876793,0.97360915,0.00018358855,0.008701584,0.00019684962],"about_ca_topic_score_codex":0.0038232887,"about_ca_topic_score_gemma":0.0011072679,"teacher_disagreement_score":0.017710745,"about_ca_system_score_codex":0.00011661575,"about_ca_system_score_gemma":0.00082328834,"threshold_uncertainty_score":0.81171876},"labels":[],"label_agreement":null},{"id":"W2754310988","doi":"10.1371/journal.pone.0183662","title":"Inflammatory cytokine production in tumor cells upon chemotherapy drug exposure or upon selection for drug resistance","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences North; University of Ottawa; NOSM University; Laurentian University","funders":"","keywords":"Docetaxel; Cytokine; Tumor necrosis factor alpha; Pharmacology; TLR4; Drug resistance; Cancer research; Medicine; Immunology; Biology; Inflammation; Internal medicine; Chemotherapy","score_opus":0.017828110035879943,"score_gpt":0.22684791319315104,"score_spread":0.2090198031572711,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2754310988","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99568355,0.00050794624,0.000019577354,0.0020433392,0.0003912218,0.0010900868,0.000007300792,0.00009390438,0.00016310149],"genre_scores_gemma":[0.96179676,0.00025183172,0.00042999728,0.000057729456,0.00019445353,0.0002646262,0.00006689218,0.000036926584,0.036900796],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986407,0.00017880926,0.00040984128,0.0003643165,0.00006728524,0.00033903966],"domain_scores_gemma":[0.99884486,0.00008461861,0.00039045513,0.0005004243,0.00016488362,0.000014732781],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006753329,0.00019687014,0.0003288657,0.00016442589,0.00048279314,0.000046557027,0.00024794828,0.00014608797,0.00013624488],"category_scores_gemma":[0.0003329399,0.00018057629,0.00006264284,0.00008338866,0.00006570664,0.0004227202,0.00003112427,0.00026230747,0.00012245186],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00569862,0.00045836018,0.0012612429,0.00021162898,0.00013576624,0.0000018077369,0.0008935846,0.0000068341383,0.9878522,0.000052557825,0.0026034678,0.0008239285],"study_design_scores_gemma":[0.0021694652,0.000102018785,0.007212925,0.00030883096,0.000043520256,0.000004152492,0.00007939612,0.000026264865,0.97579765,0.00009849462,0.013938781,0.00021850244],"about_ca_topic_score_codex":0.000037561727,"about_ca_topic_score_gemma":0.0010424278,"teacher_disagreement_score":0.036737695,"about_ca_system_score_codex":0.00012401593,"about_ca_system_score_gemma":0.00010514395,"threshold_uncertainty_score":0.7363687},"labels":[],"label_agreement":null},{"id":"W2755875967","doi":"10.1038/labinvest.2017.90","title":"Neutrophils: a cornerstone of liver ischemia and reperfusion injury","year":2017,"lang":"en","type":"review","venue":"Laboratory Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":212,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Chemokine; Inflammation; Liver injury; Reperfusion injury; Liver transplantation; Medicine; Immunology; Ischemia; Cell adhesion molecule; Transplantation; Pathology; Internal medicine","score_opus":0.0613326044062604,"score_gpt":0.3199468690057895,"score_spread":0.2586142645995291,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2755875967","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.025224164,0.97378427,0.0000018296743,0.000020819232,0.00032887713,0.00042079668,0.00007051989,0.000039961058,0.00010877906],"genre_scores_gemma":[0.0009169586,0.99782586,0.000042297394,0.0000306962,0.00005507847,0.00004632419,0.0005220919,0.000030696145,0.00052999606],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983438,0.0004893231,0.00062789884,0.0003227462,0.000045078414,0.00017113885],"domain_scores_gemma":[0.99795485,0.00010551771,0.0011320941,0.000603606,0.0001769855,0.000026935166],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004645085,0.00029503027,0.00092834904,0.00021518287,0.00020962533,0.000024527504,0.00021523242,0.000794072,0.00006536927],"category_scores_gemma":[0.00033069446,0.00025514583,0.000115905175,0.0001471742,0.00054990314,0.00026045428,0.00010927784,0.00041261435,0.0001635836],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007637731,0.000027336633,0.000028635126,0.008465074,0.00024855114,0.000007021734,0.00044103814,7.319446e-8,0.18570039,0.0011133153,0.003734467,0.8001577],"study_design_scores_gemma":[0.00020506441,0.00009943406,0.00004462528,0.004997698,0.0003939781,0.000021206028,0.000012486362,7.3430886e-7,0.043899704,0.000033096407,0.95004237,0.00024958194],"about_ca_topic_score_codex":0.00003419832,"about_ca_topic_score_gemma":0.0000023036248,"teacher_disagreement_score":0.9463079,"about_ca_system_score_codex":0.000051827596,"about_ca_system_score_gemma":0.00047703396,"threshold_uncertainty_score":0.9999901},"labels":[],"label_agreement":null},{"id":"W2757927998","doi":"10.1016/j.ejmech.2017.09.070","title":"Design, synthesis and immunological evaluation of novel amphiphilic desmuramyl peptides","year":2017,"lang":"en","type":"article","venue":"European Journal of Medicinal Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Energy; NOSM University; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada; Lakehead University","keywords":"Muramyl dipeptide; Chemistry; Muramic acid; Immune system; Peptide; Dipeptide; Amphiphile; Secretion; Biochemistry; Glycoprotein; Moiety; Stereochemistry; In vitro; Cell wall; Immunology; Peptidoglycan; Biology","score_opus":0.06797099220841797,"score_gpt":0.2865033531906085,"score_spread":0.21853236098219053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2757927998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9907099,0.005381758,0.0010729657,0.00044956518,0.00014442886,0.000060708342,0.0000011456681,0.0000054202574,0.0021741327],"genre_scores_gemma":[0.99916077,0.00033784937,0.00028987986,0.000011663512,0.00008153157,0.0000010750097,0.0000020568455,0.00000948061,0.000105667954],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985973,0.00052069384,0.00050680496,0.00010492818,0.00013436501,0.00013585536],"domain_scores_gemma":[0.9981427,0.0002677338,0.000936624,0.00026355486,0.0003647989,0.000024561554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0051702196,0.000116932075,0.00027683738,0.000043819124,0.00019338756,0.000018439843,0.0003655481,0.00007494658,0.00024408757],"category_scores_gemma":[0.003445197,0.00008673474,0.00007091513,0.000021165231,0.00046981007,0.00013060062,0.000070292655,0.00029992635,0.000011008382],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005211542,0.000057104622,0.00016091754,0.000025649233,0.00014072978,0.000016930115,0.00018512893,0.000010068945,0.95004433,0.0000048352285,0.00011666962,0.048716474],"study_design_scores_gemma":[0.0022886037,0.00023167003,0.029227458,0.00040588324,0.00026258864,0.0012233324,0.00028870892,0.000028209206,0.9653243,0.00002796177,0.00059747737,0.000093808885],"about_ca_topic_score_codex":0.0000025924319,"about_ca_topic_score_gemma":5.096868e-8,"teacher_disagreement_score":0.048622664,"about_ca_system_score_codex":0.000029116589,"about_ca_system_score_gemma":0.000099788784,"threshold_uncertainty_score":0.41244715},"labels":[],"label_agreement":null},{"id":"W2759237315","doi":"10.1016/j.chom.2017.08.008","title":"O-Acetylation of Peptidoglycan Limits Helper T Cell Priming and Permits Staphylococcus aureus Reinfection","year":2017,"lang":"en","type":"article","venue":"Cell Host & Microbe","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University Health Network; Princess Margaret Cancer Centre","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Cedars-Sinai Medical Center","keywords":"Peptidoglycan; Staphylococcus aureus; Biology; Immunity; Microbiology; Priming (agriculture); Immunology; Immune system; Bacteria; Cell wall; Biochemistry","score_opus":0.01077949718934589,"score_gpt":0.23183380766805367,"score_spread":0.22105431047870777,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2759237315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903183,0.0030486092,0.00014588363,0.00011345829,0.00051670964,0.0003195889,0.000009571139,0.000038411246,0.0054894784],"genre_scores_gemma":[0.9917565,0.0004955962,0.000079186815,0.00003262879,0.000046565106,0.000010133966,0.000065982014,0.00002372489,0.007489692],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99892,0.00012836157,0.00033756066,0.0002917563,0.000034320547,0.00028795487],"domain_scores_gemma":[0.998799,0.00006126843,0.0004669561,0.0005212753,0.00012898237,0.000022481823],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027539273,0.0002016719,0.0002695967,0.0001352795,0.0005928559,0.00005440229,0.0002010669,0.00029651093,0.00014137245],"category_scores_gemma":[0.00006549666,0.00019935703,0.00008899771,0.000044571643,0.00021767526,0.00030054164,0.000114746,0.00023116295,0.00017671991],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015070941,0.00006417915,0.0032493325,0.00009886214,0.000025952411,0.0000016329691,0.0011716629,0.0000046058367,0.99041575,0.000029945737,0.0006355765,0.004151807],"study_design_scores_gemma":[0.0011846228,0.00019332336,0.044427473,0.000060866376,0.000050230217,0.000009069082,0.00020381427,0.0000074891577,0.9313334,0.000007977015,0.022322927,0.00019879444],"about_ca_topic_score_codex":0.00014637092,"about_ca_topic_score_gemma":0.000022907321,"teacher_disagreement_score":0.059082318,"about_ca_system_score_codex":0.000042934793,"about_ca_system_score_gemma":0.00006445715,"threshold_uncertainty_score":0.81295437},"labels":[],"label_agreement":null},{"id":"W2760887315","doi":"10.4049/jimmunol.1700985","title":"Mechanisms of the Innate Defense Regulator Peptide-1002 Anti-Inflammatory Activity in a Sterile Inflammation Mouse Model","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Regulator; Innate immune system; Inflammatory response; Cell biology; Peptide; Biology; Immunology; Biochemistry; Immune system; Gene","score_opus":0.012938086978071792,"score_gpt":0.23112038345730146,"score_spread":0.21818229647922965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2760887315","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99662966,0.00044650666,0.00086923834,0.001027775,0.0006292265,0.00025348586,0.000004736822,0.00000880267,0.00013058627],"genre_scores_gemma":[0.9984776,0.00031638544,0.000049912018,0.000027270338,0.000022124084,0.0000049245746,0.0000014943612,0.000018168765,0.0010821194],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99775463,0.0009679069,0.0007857679,0.00011027952,0.000088766836,0.0002926721],"domain_scores_gemma":[0.9965341,0.00015499302,0.0020852792,0.00097540766,0.0002395713,0.000010639065],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019664783,0.00018712976,0.0004556577,0.0002044996,0.000427368,0.000021652633,0.0011060438,0.0003109591,0.000036821384],"category_scores_gemma":[0.00046453276,0.00011447237,0.00018064608,0.000071780414,0.00053604,0.00040275333,0.00034939087,0.00065321784,0.000028193195],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018469357,0.000047102945,0.00030219596,0.000014824984,0.00020404997,0.0000022415077,0.0010836697,0.0007905008,0.9926146,0.001434708,0.00007599265,0.0015831555],"study_design_scores_gemma":[0.0016779682,0.00018609696,0.06249074,0.00009297765,0.000061158615,0.00019472383,0.00023736169,0.0002406189,0.93274057,0.0017440086,0.00021966723,0.000114127964],"about_ca_topic_score_codex":0.000060387752,"about_ca_topic_score_gemma":0.000047896836,"teacher_disagreement_score":0.062188543,"about_ca_system_score_codex":0.0000769636,"about_ca_system_score_gemma":0.00022691938,"threshold_uncertainty_score":0.46680477},"labels":[],"label_agreement":null},{"id":"W2763257724","doi":"10.1126/science.aam9690","title":"Visualizing the function and fate of neutrophils in sterile injury and repair","year":2017,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":516,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Intravital microscopy; Ischemia; Bone marrow; Function (biology); Immunology; Perspective (graphical); Medicine; Pathology; Cell biology; Biology; Microcirculation; Internal medicine; Computer science","score_opus":0.013778182113207249,"score_gpt":0.2843897827824833,"score_spread":0.27061160066927603,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2763257724","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987286,0.00060808845,0.000009234283,0.00015257919,0.00017626995,0.0000578114,4.8419497e-7,0.0000063082884,0.00026065495],"genre_scores_gemma":[0.99975693,0.000083311046,0.0000072389757,0.000024385963,0.0000040864693,0.0000021041933,3.1469125e-7,0.0000010169954,0.00012058435],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9996733,0.0000413325,0.00008488087,0.000096030184,0.000016676522,0.00008780118],"domain_scores_gemma":[0.9997026,0.00002337061,0.00007283221,0.00017742475,0.00002002284,0.0000037498319],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006201464,0.000030614327,0.000053134445,0.00005130331,0.00035681503,0.000024432673,0.000104935585,0.000026655485,0.0000066024536],"category_scores_gemma":[0.000104141334,0.000020402855,0.000007816923,0.000044189088,0.0007653089,0.0002683605,0.000104157916,0.00004847336,0.0000041108597],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008591385,0.0000035393643,0.006938349,0.0000042843326,0.0000019221427,1.3737505e-7,0.00028865068,1.9307255e-7,0.98424613,0.0009831473,0.0000093569515,0.007438347],"study_design_scores_gemma":[0.00017894943,0.000098908,0.8322538,0.000019875391,0.0000030347544,0.000005500019,0.00016164928,0.000027096867,0.16513704,0.00031310171,0.0017705788,0.000030444675],"about_ca_topic_score_codex":0.000048641676,"about_ca_topic_score_gemma":0.0000070167735,"teacher_disagreement_score":0.8253155,"about_ca_system_score_codex":0.0000049374544,"about_ca_system_score_gemma":0.000023051814,"threshold_uncertainty_score":0.28198126},"labels":[],"label_agreement":null},{"id":"W2765889424","doi":"10.1016/j.imbio.2017.10.042","title":"Adenoviral vector-mediated GM-CSF gene transfer improves anti-mycobacterial immunity in mice – role of regulatory T cells","year":2017,"lang":"en","type":"article","venue":"Immunobiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Deutsches Zentrum für Lungenforschung; Bundesministerium für Bildung und Forschung","keywords":"Immunology; Immunity; Immunopathology; Mycobacterium bovis; Immune system; Biology; Granulocyte macrophage colony-stimulating factor; Medicine; Tuberculosis; Cytokine; Mycobacterium tuberculosis; Pathology","score_opus":0.006019750920172677,"score_gpt":0.21095138274627215,"score_spread":0.20493163182609947,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2765889424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933948,0.0034218975,0.0000064605097,0.0000926395,0.0021108245,0.0003690716,0.00008433577,0.000048993006,0.00047101238],"genre_scores_gemma":[0.99870425,0.0004021883,0.0000201093,0.000040263098,0.00006434286,0.000027924189,0.00040036763,0.000029673325,0.0003108848],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99747777,0.00071106735,0.00081341626,0.00036514836,0.00003747981,0.00059510046],"domain_scores_gemma":[0.9983168,0.00020517591,0.00034002282,0.0009930667,0.00012558339,0.000019340652],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00068181974,0.00031656848,0.0007207694,0.00023807683,0.00034673107,0.000029246847,0.0008835692,0.0008231746,0.00032349635],"category_scores_gemma":[0.00019524353,0.00029986515,0.00018609423,0.00008358877,0.0008317133,0.00034025658,0.00020370711,0.0005319781,0.0003557688],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001515514,0.00015569625,0.0013965247,0.000019530902,0.00019546536,0.000004851412,0.0006524183,0.0000016543457,0.99317694,0.00021484628,0.000045176163,0.0026214053],"study_design_scores_gemma":[0.0022719475,0.0002819591,0.2683798,0.000027952598,0.000027914382,0.000029183102,0.00012682054,0.0000025310999,0.7245385,0.000047323465,0.0040429384,0.00022312408],"about_ca_topic_score_codex":0.0014994123,"about_ca_topic_score_gemma":0.00006589324,"teacher_disagreement_score":0.26863843,"about_ca_system_score_codex":0.00006481095,"about_ca_system_score_gemma":0.00017364872,"threshold_uncertainty_score":0.99994534},"labels":[],"label_agreement":null},{"id":"W2766757941","doi":"10.1016/j.jim.2017.10.004","title":"Comparison of RAW264.7, human whole blood and PBMC assays to screen for immunomodulators","year":2017,"lang":"en","type":"article","venue":"Journal of Immunological Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Terry Fox Research Institute; BC Cancer Agency","funders":"Lotte and John Hecht Memorial Foundation","keywords":"Peripheral blood mononuclear cell; Lipopolysaccharide; Macrophage; Whole blood; In vitro; Immunology; Biology; Cell culture; Inflammation; Blood cell; Nitric oxide; Biochemistry; Endocrinology","score_opus":0.08572300628353867,"score_gpt":0.4621935135482927,"score_spread":0.376470507264754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2766757941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9749381,0.007438819,0.015924627,0.0005442256,0.0005586611,0.00028644654,0.000008422961,0.0000123256195,0.0002883531],"genre_scores_gemma":[0.93431336,0.000084465486,0.0651118,0.000030813735,0.000047342102,0.000008476374,0.000005833979,0.000013695729,0.00038419187],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99759936,0.0008001623,0.001062242,0.00017864635,0.00005952915,0.00030003456],"domain_scores_gemma":[0.99696535,0.00072520325,0.001439195,0.0004821623,0.00035439507,0.000033705623],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032142478,0.00019765354,0.00091400073,0.00021515416,0.0005860905,0.000058970916,0.0006765681,0.00037351606,0.00007311208],"category_scores_gemma":[0.002736173,0.00014436607,0.0002685523,0.000058830883,0.00037448297,0.00024393137,0.00024435215,0.0004589765,0.000010128421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010204768,0.00019447209,0.003498756,0.000015812755,0.00045453888,0.0000018835767,0.00027004117,0.000004735383,0.9181164,0.0010223644,0.00018111223,0.075219415],"study_design_scores_gemma":[0.0025296516,0.0033758667,0.14677194,0.00010883917,0.0001823084,0.00008183183,0.00031660023,0.000004194997,0.82803786,0.001031365,0.01738901,0.00017052308],"about_ca_topic_score_codex":0.000024010757,"about_ca_topic_score_gemma":0.0000011088015,"teacher_disagreement_score":0.14327319,"about_ca_system_score_codex":0.000024686127,"about_ca_system_score_gemma":0.000045807003,"threshold_uncertainty_score":0.58870775},"labels":[],"label_agreement":null},{"id":"W2767082490","doi":"10.1016/j.rvsc.2017.10.002","title":"Characterization of innate responses induced by in ovo administration of encapsulated and free forms of ligands of Toll-like receptor 4 and 21 in chicken embryos","year":2017,"lang":"en","type":"article","venue":"Research in Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"In ovo; Toll-like receptor; Toll; Innate immune system; Cell biology; Receptor; Chemistry; Embryo; Biology; Immunology; Biochemistry","score_opus":0.06197052296149443,"score_gpt":0.36343653541125687,"score_spread":0.30146601244976245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2767082490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99931604,0.00013889966,0.0000010661873,0.00013027937,0.000050118717,0.00027029836,0.000024870438,0.000001638905,0.00006681439],"genre_scores_gemma":[0.9995221,0.0003696702,0.00001540987,0.000001357233,0.0000013448076,0.000008872472,0.00002135107,0.0000031361228,0.00005678917],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998732,0.00026983308,0.0004738817,0.00019177301,0.00012209428,0.00021043354],"domain_scores_gemma":[0.99909306,0.00014922873,0.0002701976,0.0003281055,0.00014469808,0.0000146876555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031397808,0.00006914069,0.00023129054,0.0008531356,0.00008252827,0.000013236745,0.0003615423,0.00012931503,0.0000095018195],"category_scores_gemma":[0.0009303009,0.000063053274,0.0000115911835,0.00048409874,0.0011097728,0.0006079953,0.0002607866,0.00017868471,4.0943354e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028178159,0.000085795524,0.006397896,0.0000956413,0.000003504292,0.0000026461178,0.0010789745,1.9388133e-7,0.9867176,0.00012669,0.0000011496899,0.002672138],"study_design_scores_gemma":[0.00062389264,0.0013078045,0.4142728,0.00019713669,4.919668e-7,0.000008044515,0.00013135883,0.00003950834,0.58331853,0.000048714326,0.000018321423,0.000033393426],"about_ca_topic_score_codex":0.00022474157,"about_ca_topic_score_gemma":0.000020237569,"teacher_disagreement_score":0.40787488,"about_ca_system_score_codex":0.000026682703,"about_ca_system_score_gemma":0.00030335967,"threshold_uncertainty_score":0.4089004},"labels":[],"label_agreement":null},{"id":"W2767821190","doi":"10.4049/jimmunol.1700251","title":"Loss of NLRX1 Exacerbates Neural Tissue Damage and NF-κB Signaling following Brain Injury","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"National Institute of Neurological Disorders and Stroke; University of North Carolina at Chapel Hill","keywords":"Downregulation and upregulation; Neuroinflammation; Microglia; Neuroscience; Traumatic brain injury; Brain damage; Biology; Inflammation; Medicine; Immunology","score_opus":0.011917409783872982,"score_gpt":0.27216583621156126,"score_spread":0.2602484264276883,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2767821190","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9852431,0.010538722,0.00006925036,0.0030052818,0.00090524706,0.0000935751,0.0000021757483,0.000007723215,0.0001349658],"genre_scores_gemma":[0.9985817,0.0003964475,0.000041222615,0.00009040114,0.000045551504,9.3358307e-7,0.0000028665868,0.000013065494,0.0008278145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983887,0.00064557523,0.0005804657,0.00008615925,0.000043579577,0.00025552252],"domain_scores_gemma":[0.99791473,0.00052984053,0.0010109456,0.00041392818,0.00011918287,0.000011400134],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014935839,0.00014810583,0.00042250584,0.00014708437,0.0004940216,0.000026535556,0.0006273157,0.00020554329,0.000106058054],"category_scores_gemma":[0.00060308375,0.0001006074,0.00010925208,0.00004294246,0.00058113685,0.00034602804,0.00020878772,0.0005035117,0.000025635896],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001119503,0.000024454006,0.0008204474,0.000010537765,0.00036032274,0.000018842744,0.0012000925,0.0000075120975,0.98057264,0.00016371497,0.0002113624,0.015490582],"study_design_scores_gemma":[0.0014997553,0.00087039114,0.019078668,0.00008482321,0.00011321515,0.00065186317,0.00070239615,0.0000059527556,0.9699569,0.00040185844,0.006511103,0.00012307143],"about_ca_topic_score_codex":0.0000769865,"about_ca_topic_score_gemma":0.000003686285,"teacher_disagreement_score":0.018258221,"about_ca_system_score_codex":0.000018136703,"about_ca_system_score_gemma":0.00006038461,"threshold_uncertainty_score":0.4102651},"labels":[],"label_agreement":null},{"id":"W2769804850","doi":"","title":"Functional influence of IL10 promoter polymorphisms on gene transcription and IL10 production","year":2000,"lang":"en","type":"article","venue":"Journal of Rheumatology Supplement","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Promoter; Interleukin 10; Gene; Genetics; Gene expression; Internal medicine; Biology; Cytokine","score_opus":0.008524312800618937,"score_gpt":0.2135105784871823,"score_spread":0.20498626568656336,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2769804850","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942945,0.00085477676,0.000075510055,0.00404257,0.00051750423,0.0001731981,0.000007732868,0.000007910202,0.000026256208],"genre_scores_gemma":[0.9983256,0.0007886138,0.00016930424,0.00007939577,0.0000149752295,0.000007059511,0.00003758496,0.000007963014,0.0005694878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986407,0.00021451381,0.0007380942,0.00014288869,0.00007850685,0.00018525701],"domain_scores_gemma":[0.99927676,0.000050292016,0.0003724726,0.00013275885,0.00014904847,0.00001866033],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00048859534,0.0001308553,0.00031508738,0.00022241932,0.000098827026,0.000005468133,0.00008709758,0.00014787489,0.0021029266],"category_scores_gemma":[0.000045420096,0.00010627802,0.00008317448,0.00007581031,0.00016504609,0.00021159982,0.000009815446,0.00023358529,0.000060280672],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029197596,0.00022668016,0.0067181,0.000032940603,0.00027145623,0.0000042647675,0.0008682764,0.00030584983,0.9731162,0.0006095356,0.004137055,0.010789883],"study_design_scores_gemma":[0.003029987,0.0015981182,0.07241048,0.00015954612,0.000089893314,0.004463595,0.00014542934,0.000004441886,0.88763314,0.00036174702,0.029939495,0.00016411341],"about_ca_topic_score_codex":0.000027531105,"about_ca_topic_score_gemma":0.0000049527152,"teacher_disagreement_score":0.085483044,"about_ca_system_score_codex":0.000035886085,"about_ca_system_score_gemma":0.00007055685,"threshold_uncertainty_score":0.9988093},"labels":[],"label_agreement":null},{"id":"W2771170277","doi":"10.1021/acs.langmuir.7b03168","title":"Self-Assembled Ligands Targeting TLR7: A Molecular Level Investigation","year":2017,"lang":"en","type":"article","venue":"Langmuir","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Health Economics","funders":"Kommission für Technologie und Innovation","keywords":"Pharmacophore; Chemistry; TLR7; Cytotoxicity; Phospholipid; Polyethylene glycol; Internalization; Biophysics; Dynamic light scattering; Biochemistry; Combinatorial chemistry; Receptor; Toll-like receptor; Innate immune system; Membrane; In vitro; Biology; Nanotechnology; Nanoparticle; Materials science","score_opus":0.01961371850001309,"score_gpt":0.25069194703053865,"score_spread":0.23107822853052556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2771170277","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99457794,0.0005518182,0.00018066065,0.0012473039,0.0002591698,0.00011484144,0.000001689962,0.00011867212,0.0029479042],"genre_scores_gemma":[0.99827784,0.000020901953,0.0003158696,0.00017676473,0.000043645905,0.000016790838,0.0000716132,0.000013549801,0.0010630043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993545,0.00006971177,0.00017683493,0.0001558051,0.00002935568,0.0002137974],"domain_scores_gemma":[0.99942255,0.000026956212,0.00017521938,0.0003072517,0.000055768844,0.000012263878],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027247544,0.00010913026,0.00014244688,0.000055539986,0.000549935,0.00005927219,0.00023885276,0.00017879464,0.000057064335],"category_scores_gemma":[0.00012375647,0.00009882875,0.00005759825,0.000032338106,0.00003145649,0.00020229787,0.00007168716,0.0001422378,0.000728364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003505518,0.000013569588,0.0019443434,0.000017792263,0.000053321233,0.000007296307,0.0006965646,6.317518e-7,0.9928425,0.0016422921,0.0020013251,0.0007452897],"study_design_scores_gemma":[0.0006700107,0.000033152413,0.033161867,0.000018735884,0.000023798979,0.000012664192,0.000070427115,0.000025336765,0.9359522,0.00027059243,0.029629096,0.00013213456],"about_ca_topic_score_codex":0.00006758946,"about_ca_topic_score_gemma":0.0000050146705,"teacher_disagreement_score":0.056890335,"about_ca_system_score_codex":0.000022980525,"about_ca_system_score_gemma":0.000038924125,"threshold_uncertainty_score":0.9361889},"labels":[],"label_agreement":null},{"id":"W2774566339","doi":"10.1172/jci.insight.96882","title":"ICAM1+ neutrophils promote chronic inflammation via ASPRV1 in B cell–dependent autoimmune encephalomyelitis","year":2017,"lang":"en","type":"article","venue":"JCI Insight","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":53,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Western University; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Imperial College London; Multiple Sclerosis Society of Canada; University of Pennsylvania; Multiple Sclerosis Society; Université Laval","keywords":"Experimental autoimmune encephalomyelitis; Inflammation; Immunology; Encephalomyelitis; Medicine; Multiple sclerosis","score_opus":0.00937921257057415,"score_gpt":0.23209076622611038,"score_spread":0.22271155365553624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2774566339","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97756743,0.0038671,0.00026261702,0.0012128529,0.001332612,0.0006738003,0.0000053214326,0.000106328356,0.014971959],"genre_scores_gemma":[0.99466264,0.00048990414,0.000036730824,0.000028682321,0.00015141562,0.00009033814,0.00011996083,0.000026335554,0.004393974],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981491,0.00025754044,0.0006183862,0.00038415001,0.00008300757,0.00050783186],"domain_scores_gemma":[0.9983739,0.000055352415,0.0004614733,0.0009967327,0.000089128065,0.000023379085],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003972094,0.0002660414,0.0003576484,0.0002413104,0.0005903329,0.000111933594,0.0005801201,0.00042178767,0.0006001176],"category_scores_gemma":[0.0001084963,0.00024882614,0.00010970202,0.00008801635,0.00019790116,0.000784905,0.00020643538,0.00049344276,0.0020650355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014616369,0.00006856084,0.0003166915,0.000040382503,0.000037110844,0.00003987062,0.0010701683,0.000020603928,0.94275594,0.00050941185,0.00013631175,0.05485877],"study_design_scores_gemma":[0.002675114,0.00030976365,0.16636088,0.00012156676,0.00002629384,0.000053530654,0.000032855474,0.00008965133,0.72534996,0.000500042,0.10411487,0.00036546314],"about_ca_topic_score_codex":0.00040873588,"about_ca_topic_score_gemma":0.0001399917,"teacher_disagreement_score":0.21740599,"about_ca_system_score_codex":0.0002545209,"about_ca_system_score_gemma":0.00018307257,"threshold_uncertainty_score":0.9999964},"labels":[],"label_agreement":null},{"id":"W2774987059","doi":"10.4049/jimmunol.1700927","title":"Osteoblasts Are Rapidly Ablated by Virus-Induced Systemic Inflammation following Lymphocytic Choriomeningitis Virus or Pneumonia Virus of Mice Infection in Mice","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Lymphocytic choriomeningitis; Virus; Pneumonia; Inflammation; Virology; Medicine; Immunology; Systemic inflammation; Biology; Immune system; Internal medicine; CD8","score_opus":0.012186932924025218,"score_gpt":0.2490158129047338,"score_spread":0.23682887998070856,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2774987059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99103034,0.0060369694,0.00007352225,0.00022924326,0.0021840555,0.00034665232,0.000009332752,0.000024569954,0.000065338165],"genre_scores_gemma":[0.9959443,0.0036346389,0.000008675907,0.000021694508,0.000058153484,0.000011089285,0.000013041623,0.000031017396,0.0002773439],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9963924,0.0013353309,0.0015325599,0.00018373353,0.00010943447,0.00044650608],"domain_scores_gemma":[0.99535555,0.0004717201,0.003352432,0.0005197093,0.00027982946,0.000020784366],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019067498,0.0003020258,0.0008243281,0.000556093,0.0005087521,0.00004782812,0.0007446545,0.0005520374,0.00006741912],"category_scores_gemma":[0.0009272057,0.00022274308,0.00022174083,0.00024102395,0.00021755938,0.0007572598,0.00015135577,0.0007050622,0.00012161596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045493664,0.000059750546,0.00051187206,0.000044921242,0.0005898748,0.000034430712,0.001623347,0.000072211,0.98708373,0.000008489781,0.000091652604,0.00533037],"study_design_scores_gemma":[0.0047071953,0.00093311287,0.031723317,0.0008082252,0.00020143822,0.0017524657,0.0005063691,0.000023395789,0.9584878,0.00003184062,0.00060148357,0.00022332926],"about_ca_topic_score_codex":0.0031242706,"about_ca_topic_score_gemma":0.0006471309,"teacher_disagreement_score":0.031211443,"about_ca_system_score_codex":0.00052280485,"about_ca_system_score_gemma":0.00034286777,"threshold_uncertainty_score":0.90831995},"labels":[],"label_agreement":null},{"id":"W2779678987","doi":"10.1007/s00109-017-1613-6","title":"Chromogranin-A Regulates Macrophage Function and the Apoptotic Pathway in Murine DSS colitis","year":2017,"lang":"en","type":"article","venue":"Journal of Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; CancerCare Manitoba; Research Institute in Oncology and Hematology; University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"Institute of Nutrition, Metabolism and Diabetes; Crohn's and Colitis Canada; Mitacs; Children's Hospital Research Institute of Manitoba; University of Manitoba; Research Manitoba","keywords":"Chromogranin A; Inflammation; Macrophage; Colitis; Apoptosis; Molecular medicine; Cancer research; Inflammatory bowel disease; Immunology; Downregulation and upregulation; Medicine; Biology; Internal medicine; Disease; In vitro; Immunohistochemistry; Cell cycle; Gene; Genetics","score_opus":0.005694897625051351,"score_gpt":0.2230207402926189,"score_spread":0.21732584266756755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2779678987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98171574,0.01195837,0.0002066131,0.0047579147,0.0005692779,0.00012293868,3.5649393e-7,0.0000035419962,0.0006652666],"genre_scores_gemma":[0.9988414,0.000469231,0.000012343664,0.0002128764,0.000077613724,0.0000022335075,0.0000036870001,0.00000731948,0.00037327292],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990512,0.0002794586,0.00039166497,0.000076631404,0.000060783404,0.00014023656],"domain_scores_gemma":[0.9991073,0.00009801016,0.00045391044,0.0002339419,0.0000901018,0.00001674091],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00123049,0.000093821574,0.00029983677,0.00012002683,0.00017187143,0.000015697096,0.00017616,0.0000960522,0.00009507717],"category_scores_gemma":[0.00057613815,0.00005374486,0.000058347538,0.000040833722,0.0005110973,0.00010110857,0.000041996096,0.00028829512,0.000008918261],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021960349,0.000025238296,0.00022118814,0.000017658827,0.00012994655,0.00014783205,0.00036816558,0.000005162683,0.98415846,0.0019526466,0.00023954477,0.01053814],"study_design_scores_gemma":[0.02725096,0.0013839424,0.3238064,0.0007043554,0.00018711622,0.0021301962,0.00039227383,0.00002080325,0.6224723,0.003614755,0.0178708,0.00016611462],"about_ca_topic_score_codex":0.000066881155,"about_ca_topic_score_gemma":0.00000747384,"teacher_disagreement_score":0.36168614,"about_ca_system_score_codex":0.000019520332,"about_ca_system_score_gemma":0.000031938813,"threshold_uncertainty_score":0.21916518},"labels":[],"label_agreement":null},{"id":"W2782754655","doi":"10.1073/pnas.1719834115","title":"Crystal structure of the mammalian lipopolysaccharide detoxifier","year":2018,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; National Institute of General Medical Sciences; Government of Canada","keywords":"Lipid A; Lipopolysaccharide; Innate immune system; Chemistry; Enzyme; Biochemistry; Bacterial outer membrane; Active site; Moiety; Stereochemistry; Receptor; Biology; Escherichia coli; Gene; Immunology","score_opus":0.020000210738858295,"score_gpt":0.2721473379207951,"score_spread":0.2521471271819368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2782754655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960107,0.00012130843,5.099479e-7,0.0015934864,0.00008922733,0.00011149742,0.000013394067,0.0000044146987,0.002055463],"genre_scores_gemma":[0.9990463,0.0000049909554,0.00008594923,0.00013080443,0.00004073915,0.0000012416799,1.3424382e-7,0.0000022369236,0.0006875907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99924487,0.000016580187,0.00028653897,0.00012190282,0.00020906285,0.00012103315],"domain_scores_gemma":[0.999177,0.000060057406,0.00046276837,0.000012292879,0.00028273297,0.0000051398456],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005473164,0.00006821776,0.00011270525,0.0000902078,0.0002530187,0.000006563508,0.00078821764,0.00013327302,0.00013776164],"category_scores_gemma":[0.00042890894,0.000035931833,0.00007570974,0.00033184173,0.0018623688,0.0002257418,0.00015159429,0.00015155924,0.0000037579875],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003867252,0.000008983353,0.0019946767,0.000014426726,0.000017387321,3.1510397e-10,0.0002844309,0.0000019283452,0.9706344,0.026116665,0.0007101873,0.00017823331],"study_design_scores_gemma":[0.00012633055,0.000042444313,0.049755424,0.00004206262,0.000010963545,0.000011176369,0.00016173953,0.000009812938,0.93703663,0.011814521,0.00094975386,0.000039165083],"about_ca_topic_score_codex":0.000010675994,"about_ca_topic_score_gemma":2.6905957e-7,"teacher_disagreement_score":0.047760747,"about_ca_system_score_codex":0.000013703224,"about_ca_system_score_gemma":0.00004361163,"threshold_uncertainty_score":0.6861975},"labels":[],"label_agreement":null},{"id":"W2782851795","doi":"10.1159/000486104","title":"The&lt;b&gt;&lt;i&gt; IL20&lt;/i&gt;&lt;/b&gt; Genetic Polymorphism Is Associated with Altered Clinical Outcome in Septic Shock","year":2018,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Japan Society for the Promotion of Science; Canadian Institutes of Health Research; Heart and Stroke Foundation of Canada","keywords":"Septic shock; Polymorphism (computer science); Outcome (game theory); Medicine; Biology; Genetics; Immunology; Sepsis; Genotype; Gene","score_opus":0.02506976960208149,"score_gpt":0.2885080944426777,"score_spread":0.2634383248405962,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2782851795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9861194,0.0076998626,0.00010045535,0.0016576798,0.0024129655,0.0004194749,0.000021387328,0.000054309014,0.0015144604],"genre_scores_gemma":[0.9922825,0.0016391871,0.00012555342,0.00067394867,0.0002906281,0.000012905052,0.000041110256,0.00007297913,0.0048611565],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99152964,0.003521263,0.0031770233,0.00037692045,0.00032240327,0.0010727687],"domain_scores_gemma":[0.9939758,0.0014568584,0.0024041238,0.0010467444,0.0009966167,0.0001198304],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0057172,0.00058112596,0.001329181,0.00057750865,0.0009524769,0.00012862291,0.0012825861,0.00090545585,0.0007035428],"category_scores_gemma":[0.0020374672,0.0004131349,0.0005722366,0.00069025985,0.0011751981,0.00047891666,0.00033856503,0.0020390528,0.00057037413],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056368974,0.00095226377,0.01239434,0.000027095182,0.002167491,0.00014484688,0.002409083,0.000018985575,0.9529599,0.0003745154,0.012410383,0.010504177],"study_design_scores_gemma":[0.0122128,0.0048767324,0.82025796,0.0006700518,0.0005156927,0.0012323775,0.00022160888,0.00014507613,0.04217523,0.0005533499,0.11612879,0.0010103437],"about_ca_topic_score_codex":0.000037779475,"about_ca_topic_score_gemma":0.00033686007,"teacher_disagreement_score":0.91078466,"about_ca_system_score_codex":0.00040006646,"about_ca_system_score_gemma":0.0005846776,"threshold_uncertainty_score":0.99983203},"labels":[],"label_agreement":null},{"id":"W2783029706","doi":"10.1007/s00441-017-2767-9","title":"Recognizing conserved non-canonical localization patterns of toll-like receptors in tissues and across species","year":2018,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Receptor; Innate immune system; Cell biology; Immune system; Intracellular; Acquired immune system; Toll-like receptor; Endosome; Immunity; Cell type; Immunology; Cell; Genetics","score_opus":0.10209880911846414,"score_gpt":0.3946677529581781,"score_spread":0.29256894383971394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783029706","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023612669,0.9748052,0.000025707659,0.00002331544,0.00035419877,0.000695311,0.000018991435,0.000011362926,0.00045329583],"genre_scores_gemma":[0.0049235946,0.98032093,0.00001213661,0.0000035596322,0.000059173955,0.000045158842,0.0003159646,0.000030157156,0.014289304],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971025,0.0011442645,0.0006918535,0.0004483995,0.00009281615,0.0005201874],"domain_scores_gemma":[0.99859333,0.00071332196,0.00019175572,0.00028900546,0.00017672195,0.00003589238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017675989,0.0002551495,0.0010273509,0.00033875092,0.00021989307,0.000051212308,0.00021829516,0.0007046568,0.00037174392],"category_scores_gemma":[0.00016625316,0.00021371193,0.00007017144,0.00031133092,0.0006061856,0.00009450457,0.0003337585,0.0006035604,0.00019884226],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018783618,0.000120234516,0.0008389325,0.015531113,0.0001337984,0.000026932377,0.002583349,9.652076e-8,0.0024922036,0.000037671278,0.0030173473,0.9750305],"study_design_scores_gemma":[0.00052263617,0.00027830104,0.00011575723,0.005353341,0.000031784268,0.000038494225,0.00054969685,0.00000153859,0.013235597,0.000011857721,0.9796539,0.00020707793],"about_ca_topic_score_codex":0.00036979525,"about_ca_topic_score_gemma":0.00018840027,"teacher_disagreement_score":0.9766366,"about_ca_system_score_codex":0.000057509656,"about_ca_system_score_gemma":0.00019074121,"threshold_uncertainty_score":0.87149197},"labels":[],"label_agreement":null},{"id":"W2783719484","doi":"10.1007/s00441-017-2770-1","title":"Equine neutrophils and their role in ischemia reperfusion injury and lung inflammation","year":2018,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Inflammation; Arachidonic acid; Immunology; Chemotaxis; Neutrophil extracellular traps; Lung; Ischemia; Reperfusion injury; Biology; Medicine; Pathology; Biochemistry; Internal medicine; Receptor","score_opus":0.03450793321925401,"score_gpt":0.35513996750540566,"score_spread":0.32063203428615167,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2783719484","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12582193,0.8725085,0.0000015363723,0.00005524891,0.00007322814,0.00067645445,0.0000064112196,0.00001587477,0.00084075995],"genre_scores_gemma":[0.009318065,0.9867654,0.000007514583,0.0000027532435,0.0001173732,0.0000730201,0.00019766693,0.000028169241,0.0034900317],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976656,0.000869765,0.00048143885,0.00047936075,0.000058221958,0.00044563456],"domain_scores_gemma":[0.999019,0.00039020102,0.0001329987,0.00031638375,0.00010140653,0.00003998161],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016557457,0.0002828448,0.0007355867,0.0005402766,0.00027257644,0.00006816647,0.000151618,0.00071432587,0.000108332235],"category_scores_gemma":[0.00011506206,0.00020844732,0.000044173616,0.0002774999,0.0003817204,0.00015452868,0.00046125293,0.00082644395,0.000120795885],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000089048124,0.000016565391,0.000010138619,0.0034589623,0.000030152562,0.0000051456127,0.0004931737,1.0036984e-8,0.21780954,0.00006780378,0.0005212381,0.7774982],"study_design_scores_gemma":[0.0003513845,0.00029450806,0.000013380629,0.0024564976,0.00003502694,0.00006913351,0.000102579244,0.0000060124125,0.10041864,0.00010097472,0.89594364,0.0002082089],"about_ca_topic_score_codex":0.00007493939,"about_ca_topic_score_gemma":0.000008597203,"teacher_disagreement_score":0.8954224,"about_ca_system_score_codex":0.000052895153,"about_ca_system_score_gemma":0.0001243165,"threshold_uncertainty_score":0.8500235},"labels":[],"label_agreement":null},{"id":"W2784034857","doi":"10.4049/jimmunol.1701212","title":"Staphylococcal Superantigens Use LAMA2 as a Coreceptor To Activate T Cells","year":2018,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University Health Centre; Lawson Health Research Institute; Western University; McGill University","funders":"Canadian Institutes of Health Research","keywords":"Superantigen; Cell biology; T-cell receptor; Toxic shock syndrome; Enterotoxin; T cell; G protein-coupled receptor; Tyrosine kinase; Receptor; Chemistry; Signal transduction; Biology; Immunology; Staphylococcus aureus; Biochemistry; Immune system","score_opus":0.01300011610303222,"score_gpt":0.24306763758395483,"score_spread":0.2300675214809226,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2784034857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99465805,0.000791526,0.0003939512,0.0013516225,0.0023150935,0.00019527067,0.000004660841,0.000020024147,0.00026979236],"genre_scores_gemma":[0.9962686,0.0003485232,0.00010198971,0.0005540878,0.0001561347,0.0000025652728,0.000004070992,0.00002040797,0.0025436757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979941,0.00084957835,0.0005688109,0.00011318138,0.00005529374,0.00041902738],"domain_scores_gemma":[0.99835056,0.00047750078,0.00033255093,0.0003686403,0.00044484413,0.00002589566],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00084965816,0.0001828375,0.00037162378,0.00025701174,0.00029445425,0.000023973023,0.00054941664,0.00023962057,0.0015999138],"category_scores_gemma":[0.0003062339,0.00011699905,0.00013560447,0.00021387741,0.00049111235,0.00025087295,0.00013235376,0.00053490076,0.0035496517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005028818,0.00006446209,0.00008269569,0.0000018296643,0.00042442346,0.000008418364,0.002885081,0.000004265871,0.98139614,0.0002522299,0.0057471213,0.0041045425],"study_design_scores_gemma":[0.0009549943,0.0019684827,0.0062520416,0.000030408371,0.00005197593,0.000819953,0.0006454103,6.566243e-7,0.82140684,0.00006999561,0.1676815,0.00011774173],"about_ca_topic_score_codex":0.000112680566,"about_ca_topic_score_gemma":0.000013180925,"teacher_disagreement_score":0.16193438,"about_ca_system_score_codex":0.000055783454,"about_ca_system_score_gemma":0.00015353994,"threshold_uncertainty_score":0.99931276},"labels":[],"label_agreement":null},{"id":"W2787505540","doi":"10.4049/jimmunol.1601018","title":"IL-10 Plays Opposing Roles during <i>Staphylococcus aureus</i> Systemic and Localized Infections","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Trinity College Dublin; Irish Research Council; Science Foundation Ireland","keywords":"Immunology; Biology; Staphylococcus aureus; Proinflammatory cytokine; Immune system; Effector; Adoptive cell transfer; Microbiology; Inflammation; T cell; Bacteria","score_opus":0.008483664687518551,"score_gpt":0.23238886276800255,"score_spread":0.223905198080484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2787505540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9807117,0.017037665,0.00019664515,0.0007738482,0.00072309753,0.00012878588,0.0000036490007,0.00001950168,0.00040513705],"genre_scores_gemma":[0.99631655,0.0027769743,0.000011671427,0.00003049607,0.000071655515,0.0000033486197,0.000002666134,0.00001432405,0.0007722878],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99844944,0.00057941524,0.000549509,0.00009664642,0.00003815091,0.00028682544],"domain_scores_gemma":[0.99812496,0.00025594165,0.00094963034,0.00048146094,0.00017256715,0.00001545414],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008711358,0.00016423076,0.00037865926,0.00018046057,0.0013338826,0.000057549776,0.00050590007,0.00024290947,0.00010402761],"category_scores_gemma":[0.0003420416,0.00011053913,0.00010574702,0.000041778283,0.0005622525,0.00031971335,0.00019357871,0.0005465094,0.000096331576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012736554,0.000035598987,0.00062563893,0.000016692095,0.0004669267,0.0000109595685,0.00073674635,0.000027420136,0.9947841,0.00019012993,0.00027330703,0.0015588076],"study_design_scores_gemma":[0.0053570927,0.0008017606,0.032505576,0.00038691936,0.00032936718,0.008929927,0.001544899,0.000009549712,0.933451,0.0002668798,0.016137503,0.00027954415],"about_ca_topic_score_codex":0.000054169483,"about_ca_topic_score_gemma":0.0000123920845,"teacher_disagreement_score":0.061333135,"about_ca_system_score_codex":0.000051947365,"about_ca_system_score_gemma":0.00008461896,"threshold_uncertainty_score":0.99996626},"labels":[],"label_agreement":null},{"id":"W2787933047","doi":"10.1016/j.mayocp.2017.10.023","title":"MyD88 and TLR4 Expression in Epithelial Ovarian Cancer","year":2018,"lang":"en","type":"article","venue":"Mayo Clinic Proceedings","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Vancouver General Hospital; University of British Columbia; Alberta Health Services; BC Cancer Agency; Royal Alexandra Hospital; University of Calgary","funders":"Medical Research and Materiel Command; National Center for Research Resources; National Cancer Institute; Cancer Research UK Cambridge Institute, University of Cambridge; Instituto de Salud Carlos III; Cancer Council Tasmania; Cancer Council Victoria; National Center for Advancing Translational Sciences; Medical Research Council; Cumming School of Medicine, University of Calgary; Cancer Institute, University of Pittsburgh; Graduate School of Public Health, University of Pittsburgh; National Institutes of Health; Universitätsklinikum Hamburg-Eppendorf; Universitätsklinikum Heidelberg; National Health and Medical Research Council; Universidade de São Paulo; Royal Adelaide Hospital; Nottingham University Hospitals NHS Trust; Cancer Research UK; University of Sydney; Cancer Australia; University of Nottingham; Illawarra Shoalhaven Local Health District; Bundesministerium für Bildung und Forschung; National Institute for Health and Care Research; University of Pittsburgh; Calgary Laboratory Services; University of Cambridge; American Cancer Society; Magee-Womens Research Institute; Cancer Council South Australia; Pomorski Uniwersytet Medyczny W Szczecinie; Deutsches Krebsforschungszentrum; Canadian Institutes of Health Research; Department of Obstetrics, Gynecology and Reproductive Sciences, University of Pittsburgh; Cancer Institute NSW; Kræftens Bekæmpelse; QIMR Berghofer Medical Research Institute; Peter MacCallum Cancer Centre; Cedars-Sinai Medical Center; Conselho Nacional de Desenvolvimento Científico e Tecnológico; University of Western Sydney; Cancer Council NSW; Ovarian Cancer Australia","keywords":"Medicine; Epithelial ovarian cancer; Ovarian cancer; Expression (computer science); Cancer research; Oncology; TLR4; Gynecology; Cancer; Internal medicine","score_opus":0.016954253036514304,"score_gpt":0.28952224939486826,"score_spread":0.27256799635835394,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2787933047","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929697,0.0008362244,0.000012258005,0.0007638549,0.00058784476,0.00017338758,0.0000035047588,0.000049523664,0.004603737],"genre_scores_gemma":[0.9938448,0.0003181325,0.00008857396,0.00027233677,0.00016587335,0.000038508104,0.000006224088,0.000012477813,0.005253052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999104,0.000029188028,0.0003227373,0.0002553588,0.000026856778,0.00026183616],"domain_scores_gemma":[0.99964637,0.00005857928,0.00012040487,0.000077160286,0.000082261984,0.000015249333],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005099933,0.00011892858,0.0001931881,0.000118878954,0.0001293688,0.00002009986,0.000120933226,0.00025587904,0.001048584],"category_scores_gemma":[0.00019278194,0.000101370046,0.00003109745,0.000118658034,0.0002025679,0.00019747253,0.000093423005,0.00022502516,0.00055414095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00072595605,0.000040625742,0.010868106,0.000021927583,0.000018862409,9.2014284e-7,0.0021160166,1.5065279e-8,0.9638716,0.00024457255,0.0043857363,0.017705673],"study_design_scores_gemma":[0.002508617,0.00030953725,0.09644677,0.00022666382,0.00001868646,0.000022826947,0.00048531263,0.000011497038,0.7496901,0.0007164649,0.14933708,0.0002264103],"about_ca_topic_score_codex":0.000085603744,"about_ca_topic_score_gemma":0.000013943193,"teacher_disagreement_score":0.21418145,"about_ca_system_score_codex":0.000026023343,"about_ca_system_score_gemma":0.00004378626,"threshold_uncertainty_score":0.9998646},"labels":[],"label_agreement":null},{"id":"W2791602863","doi":"10.1038/s41409-018-0156-y","title":"Higher levels of free plasma mitochondrial DNA are associated with the onset of chronic GvHD","year":2018,"lang":"en","type":"article","venue":"Bone Marrow Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Capital District Health Authority; Hôpital de l'Enfant-Jésus; Princess Margaret Cancer Centre; Dalhousie University; University of Toronto; BC Children's Hospital; Hamilton Health Sciences; Centre hospitalier de l'Université Laval; McMaster University; University of British Columbia","funders":"National Cancer Institute; Canadian Institutes of Health Research","keywords":"Mitochondrial DNA; TLR9; Medicine; Internal medicine; CpG site; Immunology; Endocrinology; Biology; Gene; Genetics; Gene expression; DNA methylation","score_opus":0.012091595204239386,"score_gpt":0.21482827916769068,"score_spread":0.2027366839634513,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2791602863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974174,0.00021790061,0.00031005868,0.00039891616,0.00043995396,0.00024933,0.0002700802,0.00002643263,0.0006699667],"genre_scores_gemma":[0.99833876,0.000025958374,0.000026704725,0.000022407334,0.000042280546,0.0000145640515,0.00025390432,0.000012061725,0.0012633594],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905443,0.00026991582,0.00030259302,0.00013345854,0.000068818794,0.00017079094],"domain_scores_gemma":[0.99905825,0.00021825414,0.00033768883,0.00023434518,0.00014459807,0.0000068835466],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019060729,0.00012120962,0.00022168853,0.00007997439,0.000110344554,0.0000050773224,0.00015758684,0.0001820723,0.0006366338],"category_scores_gemma":[0.00003500121,0.000083824016,0.0000602115,0.00014735776,0.00030706925,0.000097303244,0.000009120957,0.000115489594,0.000039177572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022267844,0.000067152236,0.0004295385,0.000055726126,0.00022264426,0.0000043013974,0.00103171,0.000007947036,0.9930159,0.0002544613,0.0016570312,0.0010268355],"study_design_scores_gemma":[0.0033719828,0.0005294948,0.16087945,0.000117977586,0.00016062861,0.000026518976,0.00007118276,0.000006315853,0.83388585,0.000045785237,0.0008007005,0.00010409273],"about_ca_topic_score_codex":0.00005147267,"about_ca_topic_score_gemma":0.0005036915,"teacher_disagreement_score":0.1604499,"about_ca_system_score_codex":0.00003366855,"about_ca_system_score_gemma":0.00008965397,"threshold_uncertainty_score":0.69706935},"labels":[],"label_agreement":null},{"id":"W2792612645","doi":"10.1111/imm.12924","title":"Murine neutrophils treated with alphaB‐crystallin reduce <scp>IL</scp>‐12p40 production by dendritic cells","year":2018,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Brain Institute; University of Calgary","funders":"Institute of Neurosciences, Mental Health and Addiction; Canadian Institutes of Health Research; Alberta Innovates - Health Solutions","keywords":"Immune system; Chemokine; Neutrophil extracellular traps; Proteases; Immunology; Cell biology; Biology; Inflammation; Antimicrobial peptides; Heat shock protein; Microbiology; Antimicrobial","score_opus":0.006479747126581079,"score_gpt":0.21090418611696635,"score_spread":0.20442443899038526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792612645","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9906975,0.004773036,0.00013769323,0.00061056466,0.0014142192,0.0005373442,0.000022904733,0.00027959145,0.0015271268],"genre_scores_gemma":[0.9689276,0.000580326,0.00009258214,0.000120844525,0.00020956503,0.00008928016,0.00035574706,0.000058827587,0.029565215],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974214,0.0005445273,0.0005252745,0.0006427681,0.00005968291,0.0008063664],"domain_scores_gemma":[0.9984739,0.00018797496,0.00027569057,0.0007177057,0.00031617162,0.000028600622],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00028142275,0.00038951202,0.00047063603,0.0002673549,0.0004088756,0.000030326557,0.00037074485,0.00052657264,0.00033334145],"category_scores_gemma":[0.00017875049,0.00033796704,0.00008783603,0.0003801952,0.0010212999,0.000293934,0.000097365955,0.0004832948,0.0024327477],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005940732,0.00021042628,0.00010256146,0.000014763622,0.00039766854,0.000014603724,0.00045715214,0.0000034907466,0.9734787,0.00015155991,0.022194235,0.0023807664],"study_design_scores_gemma":[0.001520122,0.0014949321,0.0017615752,0.000041226664,0.00008023187,0.00051265623,0.00027421606,0.0000022990441,0.7936449,0.000044434473,0.20047665,0.00014673079],"about_ca_topic_score_codex":0.00018006795,"about_ca_topic_score_gemma":0.000019837986,"teacher_disagreement_score":0.17983377,"about_ca_system_score_codex":0.00010244621,"about_ca_system_score_gemma":0.00010169003,"threshold_uncertainty_score":0.99990726},"labels":[],"label_agreement":null},{"id":"W2792668629","doi":"10.1093/jcag/gwy009.166","title":"A166 THE LONG-LIVED ANTI-COLITIC EFFECT OF ADOPTIVE TRANSFER OF INTERLEUKIN-4 EDUCATED MACROPHAGES","year":2018,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Colitis; Adoptive cell transfer; Histopathology; Interleukin 4; Interleukin; Immunology; Trophy; Interleukin 10; Chemistry; Pharmacology; Internal medicine; Medicine; Cytokine; Pathology; T cell; Immune system","score_opus":0.004754453244976439,"score_gpt":0.21607458305470228,"score_spread":0.21132012980972584,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2792668629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99573576,0.000103686725,0.000023408536,0.0027243663,0.0011148903,0.00018151179,0.0000260183,0.0000017098039,0.00008862546],"genre_scores_gemma":[0.9993718,0.000022602648,0.000005072655,0.0001937683,0.00005264112,0.000001948792,0.000005265832,0.000008301128,0.00033857956],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.997279,0.0015844852,0.0006958505,0.00007344697,0.00008007113,0.0002871804],"domain_scores_gemma":[0.9978226,0.0003106259,0.0010256442,0.00017573331,0.0006364768,0.000028965234],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014303487,0.00011579702,0.0004783205,0.00024199237,0.000108530294,0.0000051706343,0.00040651768,0.00018709141,0.00018471728],"category_scores_gemma":[0.00051068375,0.00007126114,0.00026910452,0.00012228475,0.00038307923,0.00006738152,0.000023210763,0.00031481983,0.000009392945],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0042912457,0.00011739396,0.5565664,0.0000709171,0.0024154074,0.000004491947,0.003998418,0.000035783727,0.42630225,0.00009512378,0.0054367445,0.0006658403],"study_design_scores_gemma":[0.002296966,0.0032103679,0.6013105,0.000115800074,0.00027511508,0.000099997706,0.00019151381,0.0000030585988,0.39187336,0.000023043187,0.0005572957,0.00004296685],"about_ca_topic_score_codex":0.0021966721,"about_ca_topic_score_gemma":0.025110869,"teacher_disagreement_score":0.044744123,"about_ca_system_score_codex":0.00031874067,"about_ca_system_score_gemma":0.00032607384,"threshold_uncertainty_score":0.99267834},"labels":[],"label_agreement":null},{"id":"W2793513183","doi":"10.1089/vim.2017.0195","title":"Reduction of Marek's Disease Virus Infection by Toll-Like Receptor Ligands in Chicken Embryo Fibroblast Cells","year":2018,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; Canadian Food Inspection Agency","keywords":"TLR3; Marek's disease; Biology; Toll-like receptor; TLR2; Interferon; TLR9; TLR4; Receptor; Virus; Virology; Molecular biology; IRF7; Cell biology; Immunology; Innate immune system; Immune system; Gene expression; Gene; Genetics","score_opus":0.004756072206094681,"score_gpt":0.21530244454999983,"score_spread":0.21054637234390516,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793513183","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9949618,0.0016585418,0.000077352684,0.0002050697,0.0023086837,0.0002930703,0.00003866605,0.00007789802,0.00037893184],"genre_scores_gemma":[0.99462533,0.00077955786,0.000020806243,0.000046813468,0.00007997236,0.00004014461,0.0003540901,0.000024509085,0.00402879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982843,0.0003439836,0.00057804683,0.00034208587,0.00004024564,0.00041133366],"domain_scores_gemma":[0.9991607,0.000051673338,0.00026607662,0.00039236824,0.000108792454,0.000020401627],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00026106313,0.00022882543,0.00035141764,0.00035920466,0.00015576303,0.000012095418,0.00018824013,0.00044346042,0.0008885581],"category_scores_gemma":[0.000072790535,0.00022661964,0.00010996325,0.00028318688,0.000573028,0.0003085125,0.00010960117,0.00033875694,0.0012379447],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028061732,0.00019461117,0.00034928753,0.000019678697,0.00010882899,0.0000012268453,0.0003967292,0.0000042949214,0.9835128,0.00011826744,0.008459802,0.0040282924],"study_design_scores_gemma":[0.0013737683,0.0009191959,0.010916535,0.00007341577,0.00002521411,0.000021954409,0.00007895546,0.0000066309276,0.95438915,0.00010354056,0.031875934,0.0002157295],"about_ca_topic_score_codex":0.0008317419,"about_ca_topic_score_gemma":0.00005309706,"teacher_disagreement_score":0.02912368,"about_ca_system_score_codex":0.00009833568,"about_ca_system_score_gemma":0.00009130239,"threshold_uncertainty_score":0.99953973},"labels":[],"label_agreement":null},{"id":"W2793541038","doi":"10.3389/fimmu.2018.00132","title":"Contribution of Regulatory T Cells in Nucleotide-Binding Oligomerization Domain 2 Response to Influenza Virus Infection","year":2018,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research","keywords":"Immunology; Inflammation; NOD2; Chemokine; Influenza A virus; Immune system; Muramyl dipeptide; Biology; Virus; Medicine; Innate immune system","score_opus":0.005530887666765805,"score_gpt":0.22934362735209451,"score_spread":0.22381273968532872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2793541038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990214,0.00070054946,0.00526347,0.00011832435,0.003030697,0.00049775135,0.000010112952,0.000048945978,0.000116172254],"genre_scores_gemma":[0.9989691,0.00012572165,0.0004952479,0.000107238906,0.000025388708,0.000045683842,0.000049233633,0.000020805555,0.00016159908],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9971487,0.0012468001,0.0007791007,0.00031234135,0.00004752075,0.0004655207],"domain_scores_gemma":[0.9990522,0.00012376672,0.0002841887,0.00036804337,0.00015667279,0.000015085121],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013867232,0.0001952107,0.0004584934,0.001473536,0.000115941206,0.000008620683,0.00018984542,0.00051837135,0.000100095174],"category_scores_gemma":[0.0005108799,0.00021968885,0.0000668482,0.0008209245,0.00039920778,0.00024874147,0.00009514091,0.00029898173,0.0002771331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009551907,0.000088572255,0.0248028,0.000007158347,0.00007243515,0.0000029695152,0.0015815487,0.000060956834,0.96029925,0.00038009987,0.0005819162,0.0025703574],"study_design_scores_gemma":[0.0022694706,0.0005239263,0.21355122,0.00008159516,0.000009556134,0.000008768818,0.000229402,0.0000105857835,0.7601996,0.00030737306,0.022630746,0.00017777116],"about_ca_topic_score_codex":0.00029317246,"about_ca_topic_score_gemma":0.00009290896,"teacher_disagreement_score":0.20009969,"about_ca_system_score_codex":0.00039181497,"about_ca_system_score_gemma":0.0001098366,"threshold_uncertainty_score":0.89586514},"labels":[],"label_agreement":null},{"id":"W2794236364","doi":"10.3410/f.732682253.793542785","title":"Faculty Opinions recommendation of Lipopolysaccharide is transported to the cell surface by a membrane-to-membrane protein bridge.","year":2018,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lipopolysaccharide; Membrane; Bridge (graph theory); Cell; Chemistry; Membrane protein; Cell biology; Biochemistry; Biology; Medicine; Immunology; Internal medicine","score_opus":0.01965383222361832,"score_gpt":0.30946279078360817,"score_spread":0.28980895855998984,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794236364","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000050309856,0.0010560306,0.000049651466,0.25080353,0.0008625813,0.0029530528,0.74416214,0.000039332073,0.000023353216],"genre_scores_gemma":[0.000086563734,0.000281854,0.0001751137,0.008444489,0.00014049308,0.00036760975,0.9849885,0.00003778374,0.005477589],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9950527,0.0010077269,0.0019913048,0.0008072399,0.00059817656,0.00054287596],"domain_scores_gemma":[0.9922903,0.00016328094,0.0014147909,0.001953605,0.004011947,0.00016604902],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002096701,0.00065644545,0.0010843115,0.00032871208,0.00044554687,0.00009717736,0.0023402337,0.0010657903,0.0015736659],"category_scores_gemma":[0.0025836322,0.00039637898,0.00063017535,0.0018803027,0.00037061813,0.00028128168,0.00036183966,0.0011877816,0.0006461621],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001351663,0.0003249587,5.8176545e-7,0.0028362405,0.00023049382,1.2552577e-7,0.00049893657,1.8752964e-7,0.0074436087,0.000026753703,0.98787296,0.00062997104],"study_design_scores_gemma":[0.0008058994,0.00027950038,0.00016177859,0.0053185606,0.00021349835,0.000022735318,0.000032033968,0.0000012191184,0.045496646,0.0000024824951,0.94726986,0.00039581122],"about_ca_topic_score_codex":0.0003273866,"about_ca_topic_score_gemma":0.00001732137,"teacher_disagreement_score":0.24235904,"about_ca_system_score_codex":0.000099293786,"about_ca_system_score_gemma":0.0005298514,"threshold_uncertainty_score":0.9998488},"labels":[],"label_agreement":null},{"id":"W2794292421","doi":"10.3389/fimmu.2018.00309","title":"Polymorphisms in Toll-Like Receptor 10 and Tuberculosis Susceptibility: Evidence from Three Independent Series","year":2018,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"Specialized Research Fund for the Doctoral Program of Higher Education of China; National Natural Science Foundation of China","keywords":"Tuberculosis; Toll-like receptor; Series (stratigraphy); Medicine; Immunology; Biology; Immune system; Innate immune system; Pathology","score_opus":0.010841749098647265,"score_gpt":0.2229549848286025,"score_spread":0.21211323572995522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794292421","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9668422,0.027600331,0.000337467,0.0010234639,0.0036239743,0.0003424629,0.000014153861,0.000056353132,0.00015959675],"genre_scores_gemma":[0.99481153,0.0019806053,0.0011315813,0.00010810614,0.00005937068,0.0000678972,0.000091709495,0.000024722223,0.0017244734],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99756277,0.00061309774,0.0006137269,0.00058978976,0.000052564184,0.00056806585],"domain_scores_gemma":[0.9989846,0.00019171869,0.00015082273,0.00057858997,0.00007574593,0.00001856846],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005971155,0.00028029285,0.0005552462,0.00047363254,0.00015108261,0.000025499432,0.00037400326,0.00069279963,0.0017045168],"category_scores_gemma":[0.00028276275,0.0002785371,0.00006569177,0.000294713,0.0010843336,0.0005270548,0.00027383602,0.00050493196,0.0005046272],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005318501,0.0001124232,0.30205584,0.000010957114,0.0002886584,0.000014920142,0.003359396,0.000001126969,0.65782976,0.00013470331,0.0061271535,0.024746578],"study_design_scores_gemma":[0.003129829,0.001183984,0.75125754,0.0003022085,0.000049428712,0.00007758808,0.0031000623,0.000027311771,0.21369398,0.0022633986,0.024300016,0.00061467837],"about_ca_topic_score_codex":0.0015699748,"about_ca_topic_score_gemma":0.0045365244,"teacher_disagreement_score":0.44920167,"about_ca_system_score_codex":0.00021840648,"about_ca_system_score_gemma":0.000113808914,"threshold_uncertainty_score":0.9999667},"labels":[],"label_agreement":null},{"id":"W2794339928","doi":"10.3390/ph11010022","title":"A Novel Interaction Between the TLR7 and a Colchicine Derivative Revealed Through a Computational and Experimental Study","year":2018,"lang":"en","type":"article","venue":"Pharmaceuticals","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"TLR7; Colchicine; Receptor; Chemistry; Cell biology; Biology; Stereochemistry; Biochemistry; Innate immune system; Toll-like receptor; Genetics","score_opus":0.0785558479204005,"score_gpt":0.40647957568364407,"score_spread":0.3279237277632436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794339928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960724,0.0007419157,0.0011548204,0.0010189185,0.0001258829,0.0005415333,0.0000062562585,0.000025004505,0.00031327308],"genre_scores_gemma":[0.9991852,0.000012374116,0.00013842946,0.0004483495,0.00006768439,0.000036916004,0.000017719669,0.0000069413,0.00008639717],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991876,0.00025621956,0.00021259228,0.00017103288,0.000033816406,0.00013876408],"domain_scores_gemma":[0.9993238,0.0004539454,0.00007045141,0.00007712226,0.000061514904,0.000013183983],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030161324,0.000105166786,0.00015436621,0.00003324523,0.0003005397,0.000027152204,0.00005778853,0.000047955364,0.00016772487],"category_scores_gemma":[0.000065451626,0.00007316466,0.00001679242,0.00007577943,0.00035399073,0.00015220165,0.00009295397,0.00016213987,0.000060475162],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013586067,0.0004909435,0.010076447,0.000010718332,0.0005286984,0.0000015343956,0.019309716,0.0000016911883,0.9630926,0.0009809312,0.00060321036,0.0035448635],"study_design_scores_gemma":[0.01095453,0.002230368,0.14251772,0.000063236075,0.0002728907,0.00023307814,0.011108311,0.00035586584,0.80668885,0.00072964514,0.024491806,0.00035373488],"about_ca_topic_score_codex":0.00002504522,"about_ca_topic_score_gemma":0.0000013137394,"teacher_disagreement_score":0.15640382,"about_ca_system_score_codex":0.000018649083,"about_ca_system_score_gemma":0.000014953765,"threshold_uncertainty_score":0.2983568},"labels":[],"label_agreement":null},{"id":"W2794873819","doi":"10.1016/j.healun.2018.01.303","title":"Heart Transplant Tolerance Induction in Mice: Understanding the Complex Interplay Between Tolerizing Cells and Host Immune System by Systematic Depletion of Effector Cells","year":2018,"lang":"en","type":"article","venue":"The Journal of Heart and Lung Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Effector; Immune system; Spleen; Host (biology); Immune tolerance; Immunology; Biology; Bone marrow; Cell biology; Genetics","score_opus":0.013687480761654252,"score_gpt":0.25064649256747723,"score_spread":0.236959011805823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794873819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9896774,0.0028337052,0.006497594,0.00023591323,0.00032027613,0.00040056874,0.00001920736,0.000007015354,0.000008311152],"genre_scores_gemma":[0.99949825,0.00038953614,0.000024761297,0.000016966798,0.000037011185,0.0000029483672,0.000015432954,0.000008097381,0.00000701835],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998179,0.00088360737,0.0006465031,0.000078987585,0.00006951828,0.0001423891],"domain_scores_gemma":[0.99900055,0.0005468997,0.00031159725,0.00007919809,0.000049447397,0.00001229289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016078628,0.00011879193,0.00037275188,0.00011859168,0.00021898712,0.000019544119,0.00008479973,0.000100449615,0.0000054074894],"category_scores_gemma":[0.000005398052,0.000072164934,0.00005026795,0.00010047171,0.00016213852,0.00017736042,0.0000052563764,0.00022358286,0.0000034878674],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00084300304,0.00001080287,0.00093684735,0.002432868,0.00007719955,6.515471e-7,0.0075552366,0.000010795357,0.98804104,0.000026383314,0.00005366762,0.000011525672],"study_design_scores_gemma":[0.0014461029,0.00044218314,0.029008107,0.0053906627,0.0003775595,0.0006701896,0.0029805207,0.0002851102,0.95925766,0.0000069860694,0.000024124465,0.00011078395],"about_ca_topic_score_codex":0.00007977888,"about_ca_topic_score_gemma":0.000015764574,"teacher_disagreement_score":0.02878335,"about_ca_system_score_codex":0.000051865496,"about_ca_system_score_gemma":0.000017607275,"threshold_uncertainty_score":0.29428008},"labels":[],"label_agreement":null},{"id":"W2794877328","doi":"10.2460/ajvr.79.4.424","title":"Role of toll-like receptor 4 and caspase-3, -8, and -9 in lipopolysaccharide-induced delay of apoptosis in equine neutrophils","year":2018,"lang":"en","type":"article","venue":"American Journal of Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Saskatchewan; American College of Surgeons","keywords":"Apoptosis; Lipopolysaccharide; TLR4; Propidium iodide; Annexin; Immunology; Caspase; Incubation; Flow cytometry; Medicine; Andrology; Inflammation; Biology; Programmed cell death; Biochemistry","score_opus":0.042596266313253,"score_gpt":0.3467476838807368,"score_spread":0.30415141756748376,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794877328","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981771,0.0013390331,0.000002302798,0.00023791355,0.000073003685,0.00010898559,0.0000029850696,0.0000017081618,0.000056960944],"genre_scores_gemma":[0.9989713,0.00082157995,0.00012634456,0.000010371502,0.0000264451,0.0000039563038,0.0000015102748,0.00000940996,0.000029077326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980764,0.000821877,0.0005888771,0.00013252863,0.00009263362,0.00028768086],"domain_scores_gemma":[0.9989264,0.00033118273,0.00029775026,0.0001565494,0.00025596985,0.00003213152],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015109038,0.0000952896,0.00043046795,0.00079505343,0.00004799319,0.0000066591297,0.0001792323,0.00007834292,0.00006692818],"category_scores_gemma":[0.00016702924,0.00008300732,0.000039767107,0.00036541675,0.00084089383,0.00016648884,0.00014563746,0.00041013668,0.0000052704804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005020361,0.0000971998,0.0029610023,0.000018701834,0.000048190337,0.000013563939,0.0013005073,5.348326e-7,0.956473,0.000021774995,0.000025690471,0.034019478],"study_design_scores_gemma":[0.0016034307,0.024474908,0.023602607,0.0002738312,0.000010560359,0.00073525985,0.004468303,0.000012639798,0.94390744,0.000058247482,0.0007374122,0.00011538173],"about_ca_topic_score_codex":0.00067489245,"about_ca_topic_score_gemma":0.00002227995,"teacher_disagreement_score":0.033904094,"about_ca_system_score_codex":0.000040568593,"about_ca_system_score_gemma":0.00011368641,"threshold_uncertainty_score":0.33849403},"labels":[],"label_agreement":null},{"id":"W2794994884","doi":"10.1016/j.cyto.2018.03.017","title":"Lymphocytic choriomeningitis virus infection of dendritic cells interferes with TLR-induced IL-12/IL-23 cytokine production in an IL-10 independent manner","year":2018,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Canadian Institutes of Health Research","keywords":"Lymphocytic choriomeningitis; Proinflammatory cytokine; Cytokine; Biology; Immunology; Virus; Virology; Immune system; Microbiology; Inflammation; CD8","score_opus":0.01490532834326199,"score_gpt":0.24332807984567428,"score_spread":0.22842275150241229,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2794994884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99755764,0.00009827514,0.00015086145,0.000064844506,0.0012019068,0.0004794793,0.000033113232,0.0000954013,0.00031845455],"genre_scores_gemma":[0.99780774,0.00008080616,0.000050015657,0.000027650533,0.00022621629,0.00006283979,0.00020738145,0.000042529755,0.0014948468],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979931,0.0003407908,0.0006116152,0.0005001009,0.00010480417,0.00044958937],"domain_scores_gemma":[0.9988285,0.000048432375,0.0002889479,0.0005119181,0.0002882643,0.00003396276],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00044540173,0.00030518544,0.0004327658,0.00064516056,0.00015832171,0.000030973515,0.000195699,0.0003370231,0.00048763826],"category_scores_gemma":[0.00010179653,0.0002708712,0.00006854674,0.00042710884,0.00025080252,0.0005064958,0.00008675698,0.0002964292,0.00048551805],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002402897,0.00020723387,0.0015751314,0.00005293332,0.00010914758,0.00001226138,0.0010711957,0.000055650038,0.9877673,0.000059768612,0.0002512479,0.006435237],"study_design_scores_gemma":[0.0024995874,0.0025807468,0.030464167,0.00020199612,0.00006683764,0.0001951458,0.00014994724,0.00003402112,0.95906985,0.0000443532,0.00439328,0.00030004187],"about_ca_topic_score_codex":0.00087787345,"about_ca_topic_score_gemma":0.0014786847,"teacher_disagreement_score":0.028889034,"about_ca_system_score_codex":0.0003977832,"about_ca_system_score_gemma":0.0001667312,"threshold_uncertainty_score":0.99997437},"labels":[],"label_agreement":null},{"id":"W2795143622","doi":"10.12688/wellcomeopenres.12941.1","title":"Distinct behavior of myelomonocytic cells and CD8 T cells underlies the hepatic response to Listeria monocytogenes","year":2018,"lang":"en","type":"preprint","venue":"Wellcome Open Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institutes of Health; National Cancer Institute; Kennedy Trust for Rheumatology Research; Wellcome Trust; Wellcome","keywords":"Biology; Immune system; Spleen; Antigen; Immunology","score_opus":0.13056527423097358,"score_gpt":0.38548215691842286,"score_spread":0.2549168826874493,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2795143622","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913739,0.0014718533,0.000041249572,0.001065621,0.0008449146,0.0036248453,0.00011827835,0.000024680181,0.0014346469],"genre_scores_gemma":[0.98026127,0.00050777604,0.00022268386,0.00004377275,0.000053146894,0.0006721576,0.00009644757,0.000056789308,0.018085975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99264234,0.0048010303,0.000818476,0.00079431164,0.00021147585,0.0007323757],"domain_scores_gemma":[0.99546576,0.0020104498,0.00028660672,0.0017089498,0.00045864095,0.00006961181],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0072697536,0.00038897828,0.0007493442,0.0005036754,0.00065579196,0.0004052875,0.0025374114,0.00057202444,0.00086979155],"category_scores_gemma":[0.0004071734,0.00028744346,0.00013234475,0.00033427202,0.0012359344,0.00011920451,0.0076921,0.0010309921,0.0014280053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0071452484,0.00014098006,0.00034620435,0.00021251754,0.00017945153,0.000015070274,0.0022452702,0.0000061227565,0.9805672,0.000090991874,0.005236857,0.0038140856],"study_design_scores_gemma":[0.0008190206,0.0008387646,0.015610319,0.0003889726,0.00009557121,0.000018853048,0.0007697125,0.000020683037,0.93952304,0.00046783427,0.041075367,0.0003718478],"about_ca_topic_score_codex":0.0020045382,"about_ca_topic_score_gemma":0.00015026737,"teacher_disagreement_score":0.041044146,"about_ca_system_score_codex":0.00018750905,"about_ca_system_score_gemma":0.0006240827,"threshold_uncertainty_score":0.9999578},"labels":[],"label_agreement":null},{"id":"W2797535195","doi":"10.3389/fvets.2018.00057","title":"Anti-Inflammatory Benefits of Antibiotics: Tylvalosin Induces Apoptosis of Porcine Neutrophils and Macrophages, Promotes Efferocytosis, and Inhibits Pro-Inflammatory CXCL-8, IL1α, and LTB4 Production, While Inducing the Release of Pro-Resolving Lipoxin A4 and Resolvin D1","year":2018,"lang":"en","type":"article","venue":"Frontiers in Veterinary Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canterbury Medical Research Foundation; University of Calgary","keywords":"Efferocytosis; Leukotriene B4; Inflammation; Apoptosis; Proinflammatory cytokine; Tumor necrosis factor alpha; Chemokine; Lipid signaling; Immunology; Necrosis; Chemistry; Respiratory burst; Phospholipase A2; Biology; Macrophage; Pharmacology; Biochemistry; In vitro; Enzyme","score_opus":0.014870811857261496,"score_gpt":0.230915176527678,"score_spread":0.21604436467041652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2797535195","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98696434,0.011642741,0.0000119074175,0.00017453646,0.00037846604,0.0007761428,0.000010631457,0.000018113822,0.000023144381],"genre_scores_gemma":[0.99744785,0.0014499995,0.000999642,0.000010491847,0.000036988553,0.000005243844,0.000004364279,0.00001629722,0.000029132103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997927,0.00030622358,0.00068491,0.00057477364,0.00013939379,0.0003677135],"domain_scores_gemma":[0.9987051,0.00009719854,0.0005122289,0.0003986741,0.00024396597,0.00004283028],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.001647711,0.00025149272,0.00050169736,0.00062764663,0.00039802646,0.000035855148,0.0002669798,0.00018994397,0.000002962245],"category_scores_gemma":[0.00043569965,0.00020164477,0.00002650939,0.00057616807,0.0036579384,0.0006732048,0.0004084027,0.00025228568,4.2958405e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000470269,0.000055396176,0.035336692,0.00046293132,0.00003559427,0.000001880662,0.0032438496,0.0000038005742,0.9531082,0.00006753779,0.000047100453,0.0071667484],"study_design_scores_gemma":[0.00057385006,0.0010846696,0.23128965,0.0007275989,0.000029947616,0.0001050842,0.000697742,0.000059354676,0.76517487,0.000032621134,0.00006675976,0.00015786164],"about_ca_topic_score_codex":0.00004926806,"about_ca_topic_score_gemma":0.0000033892659,"teacher_disagreement_score":0.19595295,"about_ca_system_score_codex":0.000029807661,"about_ca_system_score_gemma":0.00016097378,"threshold_uncertainty_score":0.99905354},"labels":[],"label_agreement":null},{"id":"W2802209999","doi":"10.15761/gimci.1000152","title":"Lipopolysaccharide, structure and biological effects","year":2018,"lang":"en","type":"article","venue":"General Internal Medicine and Clinical Innovations","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipopolysaccharide; Medicine; Immunology","score_opus":0.042086283324746725,"score_gpt":0.3599072439222469,"score_spread":0.31782096059750015,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2802209999","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99292105,0.0009475994,0.00066678517,0.0031624178,0.0014306925,0.0001149285,0.000004087182,0.000035121542,0.00071733043],"genre_scores_gemma":[0.9937068,0.0003223742,0.00018859921,0.0031598767,0.0008179528,0.0000049166233,0.00004714787,0.000006104968,0.001746201],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99888444,0.00016181316,0.0005199995,0.0002349216,0.000027782737,0.00017102837],"domain_scores_gemma":[0.99916065,0.00039551227,0.00012328509,0.00013497905,0.0001574865,0.000028068995],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003582402,0.0001248028,0.0002641824,0.00010941781,0.00016364425,0.000011648973,0.00009411962,0.00024393688,0.00047586364],"category_scores_gemma":[0.0009471286,0.000080475365,0.000029533645,0.00012405845,0.0009878526,0.00007225992,0.00009269849,0.0003352696,0.00005069783],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036014884,0.000056745597,0.046934955,0.000014460361,0.00029210554,0.0000064869264,0.00027475232,3.4206913e-8,0.7808347,0.04240269,0.024711026,0.10411192],"study_design_scores_gemma":[0.0062730773,0.0076195677,0.5991871,0.00036641234,0.00019722765,0.0004679699,0.00028544737,0.00011526416,0.18777667,0.013260081,0.1838914,0.0005597815],"about_ca_topic_score_codex":0.00011693104,"about_ca_topic_score_gemma":0.000017907028,"teacher_disagreement_score":0.593058,"about_ca_system_score_codex":0.000006280317,"about_ca_system_score_gemma":0.00001774256,"threshold_uncertainty_score":0.52103734},"labels":[],"label_agreement":null},{"id":"W2804311153","doi":"10.1186/s12882-018-0867-8","title":"No difference in renal injury and fibrosis between wild-type and NOD1/NOD2 double knockout mice with chronic kidney disease induced by ureteral obstruction","year":2018,"lang":"en","type":"article","venue":"BMC Nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Nierstichting; ZonMw","keywords":"Medicine; Fibrosis; Kidney disease; NOD1; Inflammation; Acute kidney injury; Pathogenesis; Kidney; Nephropathy; NOD2; Internal medicine; Nephrology; Pathology; Endocrinology; Receptor; Innate immune system","score_opus":0.010546957447974353,"score_gpt":0.23094016317642407,"score_spread":0.22039320572844973,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2804311153","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99816024,0.0009023387,0.00003892253,0.00023027073,0.00024188789,0.00029242286,0.000025127874,0.000038676986,0.000070097405],"genre_scores_gemma":[0.9984254,0.0000914038,0.00008869835,0.0002484218,0.00013828024,0.000028093937,0.00025604625,0.000016731652,0.0007068826],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9986626,0.00026822183,0.00027405855,0.00038849397,0.000032073258,0.00037455786],"domain_scores_gemma":[0.9994011,0.00009997952,0.00012610543,0.00022238019,0.000084821964,0.00006563921],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013245095,0.00021231802,0.00030205096,0.00015237939,0.00016898396,0.000020661275,0.00011423373,0.00032342967,0.00015621986],"category_scores_gemma":[0.00006694932,0.00018151345,0.000021442103,0.00017310292,0.00051712146,0.00020510676,0.00009726514,0.00027575283,0.000110688714],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008240715,0.000022729746,0.054289445,0.00003484826,0.00007150747,0.0000010645552,0.0002251228,1.4336948e-7,0.9335974,0.000072225645,0.001003301,0.0024415222],"study_design_scores_gemma":[0.006446432,0.003184066,0.817849,0.00010456508,0.00014548498,0.00005031214,0.000021603164,0.000035421963,0.13013045,0.0000940599,0.041483283,0.00045533403],"about_ca_topic_score_codex":0.000286163,"about_ca_topic_score_gemma":0.00010278681,"teacher_disagreement_score":0.8034669,"about_ca_system_score_codex":0.000052668063,"about_ca_system_score_gemma":0.00020481007,"threshold_uncertainty_score":0.7401903},"labels":[],"label_agreement":null},{"id":"W2806236985","doi":"10.1016/j.vetimm.2018.06.006","title":"Expression of pattern recognition receptors in porcine uterine epithelial cells in vivo and in culture","year":2018,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Saskatchewan Health Research Foundation; University of Saskatchewan; Department of Veterinary Microbiology, Western College of Veterinary Medicine, University of Saskatchewan","keywords":"Biology; TLR2; TLR9; TLR3; Innate immune system; Cell biology; Pattern recognition receptor; NOD1; TLR4; Immune system; Receptor; In vivo; Toll-like receptor; Signal transduction; Immunology; NOD2; Gene expression","score_opus":0.012445320081977605,"score_gpt":0.24620448261358863,"score_spread":0.23375916253161103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806236985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942758,0.00410048,0.000025529389,0.00011319577,0.0009967871,0.00028892906,0.00002520276,0.000020811513,0.00015326445],"genre_scores_gemma":[0.9956539,0.0038266126,0.00010923875,0.00006699774,0.000021794534,0.00004745782,0.000063321626,0.000017434804,0.00019322704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99748576,0.0009241581,0.00072979985,0.0004133287,0.00002374964,0.00042318052],"domain_scores_gemma":[0.9993408,0.00011220517,0.0002151795,0.0002704206,0.000050461942,0.000010938529],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005730935,0.00025936693,0.0005560872,0.00063765224,0.000073986834,0.000005697251,0.00015881709,0.0006367561,0.00034080693],"category_scores_gemma":[0.000071853814,0.00024460148,0.000035667403,0.00023525167,0.00076298387,0.00024021814,0.0002451887,0.00048468122,0.00004552662],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037416713,0.00015956802,0.0075867698,0.000043113017,0.000014816976,0.00009188619,0.003111707,3.029013e-7,0.95893073,0.0000071869226,0.000025995378,0.026286239],"study_design_scores_gemma":[0.004146709,0.0031010993,0.1263579,0.00023377077,0.000007806557,0.00089021475,0.0007721153,0.00000502287,0.85848457,0.0001843338,0.005554066,0.00026236154],"about_ca_topic_score_codex":0.00019843342,"about_ca_topic_score_gemma":0.0000635439,"teacher_disagreement_score":0.118771136,"about_ca_system_score_codex":0.000038171027,"about_ca_system_score_gemma":0.000026822332,"threshold_uncertainty_score":0.99745595},"labels":[],"label_agreement":null},{"id":"W2806675295","doi":"10.1186/s12985-018-0954-2","title":"Potential mediators of in ovo delivered double stranded (ds) RNA-induced innate response against low pathogenic avian influenza virus infection","year":2018,"lang":"en","type":"article","venue":"Virology Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"Agriculture and Agri-Food Canada; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council; University of Calgary","keywords":"In ovo; Biology; TLR3; Virology; Interferon; RNA silencing; Innate immune system; Virus; Interferon type I; Influenza A virus subtype H5N1; Immunology; RNA; Toll-like receptor; Embryo; Immune system; RNA interference; Gene; Cell biology","score_opus":0.010600302958336964,"score_gpt":0.2523605012311528,"score_spread":0.2417601982728158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806675295","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99732023,0.00039479657,0.00015336664,0.0001512985,0.001628075,0.00021560691,0.0000084548565,0.000033049728,0.00009513331],"genre_scores_gemma":[0.9991136,0.00036743307,0.000019633353,0.0002542026,0.00013307243,0.000009457943,0.000021019743,0.00002238978,0.00005915824],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99672085,0.0014823364,0.0009365202,0.00025322265,0.00008303652,0.0005240097],"domain_scores_gemma":[0.9987533,0.00012566938,0.00056218024,0.00026600502,0.00024440797,0.000048431277],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017975385,0.00024020452,0.0004339912,0.00081349263,0.00030174284,0.000020230787,0.00024621584,0.0007258756,0.000516236],"category_scores_gemma":[0.00022032579,0.00022254502,0.00017678442,0.00031693486,0.0003452828,0.00032939532,0.00007429336,0.0008711702,0.00032585775],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02970733,0.00014309489,0.0042605065,0.0000068789923,0.00018231613,0.00005945655,0.0008572528,0.00007926559,0.95970243,0.000016584576,0.00007509497,0.004909758],"study_design_scores_gemma":[0.009788228,0.0012214414,0.24575885,0.00004487121,0.000054092736,0.00047198826,0.00008002951,0.000037349808,0.7414288,0.00012771906,0.00077633804,0.00021029336],"about_ca_topic_score_codex":0.00015685974,"about_ca_topic_score_gemma":0.00020274032,"teacher_disagreement_score":0.24149834,"about_ca_system_score_codex":0.000114680726,"about_ca_system_score_gemma":0.0002988038,"threshold_uncertainty_score":0.90751225},"labels":[],"label_agreement":null},{"id":"W2806881856","doi":"10.1089/vim.2017.0142","title":"Double-Stranded Ribonucleic Acid-Mediated Antiviral Response Against Low Pathogenic Avian Influenza Virus Infection","year":2018,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; South Health Campus","funders":"University of Guelph; Canadian Poultry Research Council","keywords":"TLR3; RNA silencing; Biology; Virology; Proinflammatory cytokine; Interferon; Virus; Immune system; Influenza A virus subtype H5N1; Innate immune system; Microbiology; RNA; Immunology; Toll-like receptor; Inflammation; RNA interference; Gene","score_opus":0.012384147045703451,"score_gpt":0.2541243497392509,"score_spread":0.24174020269354746,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2806881856","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9938576,0.0014081195,0.00017623919,0.00021772043,0.0023653302,0.00054099597,0.00004334952,0.0004694273,0.0009211835],"genre_scores_gemma":[0.9970923,0.0003685654,0.000025840682,0.0006835475,0.00013524886,0.0000708986,0.0004009052,0.000062281855,0.0011604347],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9960052,0.0014304123,0.0008758857,0.0006152864,0.0000790485,0.0009942045],"domain_scores_gemma":[0.9983238,0.00020583373,0.0003869047,0.0007829145,0.00026510004,0.000035442263],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009610861,0.00049390644,0.00059746613,0.00064538256,0.0006583606,0.000057318222,0.00041506,0.001105525,0.0006397487],"category_scores_gemma":[0.00034757133,0.00047434398,0.00026765885,0.00053531275,0.0011499787,0.0005877209,0.00020692246,0.0007923724,0.00998504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.026857244,0.00018863038,0.0012738957,0.000010780627,0.0003911887,0.0000247563,0.0007190505,0.0000018278973,0.96126837,0.00012427587,0.00040541164,0.0087345615],"study_design_scores_gemma":[0.0077393376,0.0016113564,0.062898956,0.000050917162,0.00006237931,0.00010278898,0.00006273242,0.000019598872,0.8771115,0.00007541365,0.04974557,0.0005194376],"about_ca_topic_score_codex":0.0003610132,"about_ca_topic_score_gemma":0.00015281445,"teacher_disagreement_score":0.08415686,"about_ca_system_score_codex":0.00018033573,"about_ca_system_score_gemma":0.00022713086,"threshold_uncertainty_score":0.9997708},"labels":[],"label_agreement":null},{"id":"W2809336329","doi":"10.1016/j.jpba.2018.06.025","title":"27Al and 31P NMR spectroscopy method development to quantify aluminum phosphate in adjuvanted vaccine formulations","year":2018,"lang":"en","type":"article","venue":"Journal of Pharmaceutical and Biomedical Analysis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada); York University","funders":"Mitacs; University of Toronto; York University; Sanofi Pasteur; Government of Ontario","keywords":"Chemistry; Phosphate; Nuclear magnetic resonance spectroscopy; Aluminium; Spectroscopy; Organic chemistry","score_opus":0.020121570973167996,"score_gpt":0.3574482952809244,"score_spread":0.33732672430775645,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2809336329","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.950705,0.0018363983,0.04357499,0.0035832701,0.00015851848,0.00008993085,0.0000040875007,0.00000791043,0.00003988512],"genre_scores_gemma":[0.99008983,0.0003193851,0.008912301,0.00039671056,0.000081591614,0.0000023564357,0.00002207895,0.0000052451037,0.00017051357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850154,0.00020250423,0.00073477504,0.0001742068,0.000103234954,0.0002837436],"domain_scores_gemma":[0.99930245,0.00019837618,0.00015981127,0.00007010014,0.00013650929,0.00013277686],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011790843,0.00013546704,0.00046710327,0.0007219605,0.0001279024,0.000020318153,0.00010909822,0.00014079358,0.00072210934],"category_scores_gemma":[0.00016145082,0.00009244677,0.00009887303,0.00091664214,0.00013053544,0.000114350056,0.000083233615,0.0002838303,0.000046962585],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021558627,0.00030851853,0.01069721,0.000024848585,0.0019626564,0.00003877841,0.0010972293,0.0000033554322,0.874149,0.00019821631,0.000645349,0.10871893],"study_design_scores_gemma":[0.005064162,0.0009819757,0.15982877,0.00010413619,0.001595344,0.00031717474,0.00027902256,0.003670169,0.6501153,0.00020363303,0.17749947,0.00034083903],"about_ca_topic_score_codex":0.000018268713,"about_ca_topic_score_gemma":0.000022733571,"teacher_disagreement_score":0.22403374,"about_ca_system_score_codex":0.00003661703,"about_ca_system_score_gemma":0.00006660595,"threshold_uncertainty_score":0.7906591},"labels":[],"label_agreement":null},{"id":"W2810177515","doi":"10.1139/bcb-2017-0339","title":"Carnosol suppresses interleukin-6 production in mouse lungs injured by ischemia–reperfusion operation and in RAW264.7 macrophages treated with lipopolysaccharide","year":2018,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Reactive oxygen species; Lipopolysaccharide; Ischemia; Gene knockdown; Reperfusion injury; Proinflammatory cytokine; Ex vivo; Chemistry; Hypoxia (environmental); Pharmacology; Biology; Molecular biology; Immunology; Inflammation; Medicine; Oxygen; Biochemistry; Gene; In vitro; Internal medicine","score_opus":0.003204009612900909,"score_gpt":0.20404836375927538,"score_spread":0.20084435414637447,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810177515","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964285,0.0029098256,0.0000066392327,0.00015145697,0.000072323375,0.00019550267,0.000014044931,0.000026395748,0.0001953111],"genre_scores_gemma":[0.9964889,0.0006423541,0.000018745179,0.000034089393,0.00003708601,0.000033507928,0.0003483753,0.000009841247,0.0023871013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989455,0.00014513468,0.0002532987,0.00041112816,0.000015618698,0.00022936994],"domain_scores_gemma":[0.9996591,0.00003220397,0.00008515054,0.00016579185,0.000040577128,0.000017170418],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017622288,0.00018171643,0.00021184963,0.00007837572,0.000093864095,0.000015877275,0.0000749291,0.00037483237,0.0000882394],"category_scores_gemma":[0.00004340193,0.00014746106,0.0000141837645,0.00006878845,0.0003495645,0.00009580004,0.000059437632,0.00019131081,0.000011479586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010998779,0.00007120237,0.0077877603,0.00004061729,0.000015696356,0.0000019656832,0.0003051768,3.2787267e-7,0.98791915,0.0000021585374,0.00033496632,0.0024211202],"study_design_scores_gemma":[0.0011901333,0.00028771334,0.00026935982,0.000034992656,0.000010869769,0.000040348663,0.00033609013,0.0000069687367,0.99663895,0.0000032416885,0.0010064499,0.0001749006],"about_ca_topic_score_codex":0.0003133928,"about_ca_topic_score_gemma":0.000054795197,"teacher_disagreement_score":0.008719801,"about_ca_system_score_codex":0.000031094376,"about_ca_system_score_gemma":0.00003340259,"threshold_uncertainty_score":0.60132873},"labels":[],"label_agreement":null},{"id":"W2810843485","doi":"10.1002/9781119070153.ch8","title":"Class‐Related Proinflammatory Effects","year":2018,"lang":"en","type":"other","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Proinflammatory cytokine; Immune system; Immunology; Pharmacology; Innate immune system; Drug; Medicine; Biology; Computational biology; Inflammation","score_opus":0.003127771796202408,"score_gpt":0.20258869547627895,"score_spread":0.19946092368007654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2810843485","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00057930796,0.0050266334,0.00003152391,0.0000522654,0.002199582,0.0005671538,0.0000020688665,0.0007566781,0.99078476],"genre_scores_gemma":[0.0006522181,0.00012260253,0.00003880148,0.00006036969,0.00010926033,0.00003964516,0.00022919173,0.00029087297,0.998457],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99889296,0.00023921828,0.0002585323,0.00027960746,0.000028548877,0.00030114263],"domain_scores_gemma":[0.9992528,0.00006482875,0.00020893173,0.00043420418,0.000026724421,0.000012502913],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00014772583,0.00027846408,0.00034414663,0.00029467756,0.00006189822,0.000010004504,0.00020171095,0.0012169625,0.05040864],"category_scores_gemma":[0.00006069184,0.00022543514,0.00011300463,0.000085341766,0.00019533648,0.000032943233,0.000065426924,0.00024148391,0.121891856],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039591792,0.000021094163,0.000014969215,0.00008537732,0.00034853918,0.0000070648157,0.0000366075,1.2834639e-8,0.048095338,0.001443039,0.9472825,0.002625893],"study_design_scores_gemma":[0.00074348133,0.00010610601,0.0000872965,0.00020267122,0.000053719283,0.000033193213,0.000008388588,6.2282953e-7,0.06872888,0.00004898694,0.9297276,0.00025906652],"about_ca_topic_score_codex":0.000036704918,"about_ca_topic_score_gemma":0.000017036145,"teacher_disagreement_score":0.07148322,"about_ca_system_score_codex":0.000029401976,"about_ca_system_score_gemma":0.00008208564,"threshold_uncertainty_score":0.9504594},"labels":[],"label_agreement":null},{"id":"W2869439706","doi":"10.1038/s41598-018-28777-0","title":"Low-density lipoprotein (LDL)-dependent uptake of Gram-positive lipoteichoic acid and Gram-negative lipopolysaccharide occurs through LDL receptor","year":2018,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":72,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Montreal Clinical Research Institute; McMaster University; Thrombosis and Atherosclerosis Research Institute","funders":"Canadian Institutes of Health Research; Canada Research Chairs; Government of Canada; McMaster University","keywords":"Lipoteichoic acid; Gram; LDL receptor; Lipopolysaccharide; Gram-negative bacteria; Microbiology; Low-density lipoprotein; Lipoprotein; Chemistry; Biology; Bacteria; Cholesterol; Biochemistry; Immunology; Staphylococcus aureus; Escherichia coli; Gene; Genetics","score_opus":0.00998616335704496,"score_gpt":0.23951300651662172,"score_spread":0.22952684315957675,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2869439706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98852617,0.0008519821,0.00051545724,0.00019233073,0.008235249,0.0007988401,0.000020760903,0.00009942273,0.00075978803],"genre_scores_gemma":[0.99399775,0.000043926804,0.0004842278,0.000052694366,0.000110335226,0.000035836834,0.00014914296,0.00002499331,0.005101099],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99682665,0.00033039114,0.0010315314,0.0010110578,0.00022793726,0.0005724607],"domain_scores_gemma":[0.9972266,0.000100402875,0.0009042139,0.0010041038,0.0007086231,0.00005607752],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0018467376,0.0003315868,0.000522695,0.00023917739,0.0007988259,0.00012657238,0.00023011961,0.000368844,0.00052673515],"category_scores_gemma":[0.0008211076,0.0002950623,0.00016842494,0.0003875022,0.0016906449,0.00054275873,0.00024303888,0.00035019364,0.0003778452],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003680996,0.00013481511,0.0002441833,0.000030064895,0.00017035221,0.00004135955,0.003799449,7.0238235e-7,0.9786651,0.00026509975,0.0027849656,0.013495809],"study_design_scores_gemma":[0.0004948936,0.0003208465,0.002586699,0.00015876656,0.00006771609,0.00034303113,0.00067372783,0.0000028984232,0.98327374,0.0035625359,0.008219576,0.00029558555],"about_ca_topic_score_codex":0.0007255622,"about_ca_topic_score_gemma":0.0001901952,"teacher_disagreement_score":0.013200223,"about_ca_system_score_codex":0.00008441731,"about_ca_system_score_gemma":0.000246611,"threshold_uncertainty_score":0.9999502},"labels":[],"label_agreement":null},{"id":"W2883099048","doi":"10.1177/1352458518791683","title":"Multiple sclerosis disease progression: Contributions from a hypoxia–inflammation cycle","year":2018,"lang":"en","type":"article","venue":"Multiple Sclerosis Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Multiple sclerosis; Hypoxia (environmental); Medicine; Inflammation; Disease; Neuroscience; Pathology; Internal medicine; Psychology; Immunology; Chemistry; Oxygen","score_opus":0.035066947406308224,"score_gpt":0.25354632373801106,"score_spread":0.21847937633170283,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2883099048","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883346,0.002576674,0.0044121044,0.0017121257,0.001933819,0.0004471127,0.00021234625,0.00018315646,0.00018806425],"genre_scores_gemma":[0.99688476,0.00038868646,0.0008327712,0.00013530982,0.0009803633,0.00008027057,0.000408476,0.00003976164,0.00024960056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972642,0.00063945126,0.0008246811,0.00040057677,0.00017957563,0.00069148897],"domain_scores_gemma":[0.99775404,0.00046351866,0.0005216544,0.0004889126,0.0005932451,0.00017861642],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00070653396,0.00032642327,0.00036424535,0.00023777572,0.0018055716,0.00021835642,0.0004101999,0.00032120422,0.0023742097],"category_scores_gemma":[0.0016453284,0.00028853415,0.00029966945,0.00027543705,0.0004283819,0.0007471322,0.00014713407,0.0005753348,0.0024552874],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017238125,0.00018045318,0.01054684,0.0000056036174,0.00021037839,0.0000056126305,0.00057506136,0.000029825234,0.9277457,0.000044709075,0.004906712,0.054025304],"study_design_scores_gemma":[0.006661443,0.00023919092,0.42621633,0.00052653934,0.00014396814,0.00003464954,0.00021266376,0.0011938874,0.5350175,0.00026502833,0.029056244,0.00043253257],"about_ca_topic_score_codex":0.00009987587,"about_ca_topic_score_gemma":0.00005033471,"teacher_disagreement_score":0.4156695,"about_ca_system_score_codex":0.00017968986,"about_ca_system_score_gemma":0.00019631749,"threshold_uncertainty_score":0.99995667},"labels":[],"label_agreement":null},{"id":"W2885231949","doi":"10.1016/j.humimm.2018.08.007","title":"IL-8 analogue CXCL8 (3-72) K11R/G31P, modulates LPS-induced inflammation via AKT1-NF-kβ and ERK1/2-AP-1 pathways in THP-1 monocytes","year":2018,"lang":"en","type":"article","venue":"Human Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Royal University Hospital","funders":"National Natural Science Foundation of China","keywords":"Inflammation; Chemokine; Chemistry; CXC chemokine receptors; NF-κB; Receptor; Interleukin 8; Lipopolysaccharide; THP1 cell line; Signal transduction; IκBα; Molecular biology; Endocrinology; Internal medicine; Chemokine receptor; Biology; Biochemistry; Cell culture; Medicine","score_opus":0.02089079123228367,"score_gpt":0.24355774863348442,"score_spread":0.22266695740120074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885231949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99382174,0.0029925886,0.00016654443,0.00029207682,0.0007088645,0.0004966044,0.000010603982,0.00020410142,0.0013068622],"genre_scores_gemma":[0.99842566,0.00026976602,0.000053792264,0.00009066452,0.0001433531,0.00007382426,0.00041627057,0.000049383147,0.0004772986],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968522,0.0006928828,0.00089926063,0.0006303023,0.000060904513,0.0008644568],"domain_scores_gemma":[0.9985061,0.00020825605,0.00037347435,0.00069862796,0.0001840088,0.000029495985],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0006594044,0.00044682994,0.00063284574,0.0007525245,0.00067267736,0.000056925513,0.00042011807,0.00086380925,0.00064758596],"category_scores_gemma":[0.00017074718,0.00044175485,0.00011552791,0.00031457533,0.0007027864,0.0004706977,0.00030514118,0.000640988,0.001292927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047522446,0.0000759652,0.0016272749,0.00002077527,0.0002235885,0.000013440695,0.0031433227,0.0000032864323,0.9676053,0.0053436114,0.0001292949,0.021338906],"study_design_scores_gemma":[0.0027354334,0.0011105086,0.17826015,0.000079464604,0.000050668055,0.00017698569,0.0004120997,0.0001006383,0.8048907,0.005623979,0.0060272655,0.0005321395],"about_ca_topic_score_codex":0.0008835363,"about_ca_topic_score_gemma":0.0006020943,"teacher_disagreement_score":0.17663288,"about_ca_system_score_codex":0.00014694296,"about_ca_system_score_gemma":0.00007901488,"threshold_uncertainty_score":0.9998034},"labels":[],"label_agreement":null},{"id":"W2885790208","doi":"10.1016/j.cellsig.2018.08.001","title":"Tie2 signalling through Erk1/2 regulates TLR4 driven inflammation","year":2018,"lang":"en","type":"article","venue":"Cellular Signalling","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Hospital for Sick Children; University of Guelph; University of Toronto; SickKids Foundation; Sunnybrook Hospital","funders":"Canadian Institutes of Health Research; Cancer Research Society","keywords":"TLR4; Angiopoietin receptor; Inflammation; Receptor tyrosine kinase; Cell biology; Lipopolysaccharide; Biology; Receptor; Downregulation and upregulation; Signal transduction; Immunology; Biochemistry","score_opus":0.015307101712675877,"score_gpt":0.22682061828650407,"score_spread":0.2115135165738282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2885790208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9417582,0.0028044907,0.049242858,0.00027960027,0.0008743275,0.0003447757,0.0000024281605,0.00025494548,0.0044383397],"genre_scores_gemma":[0.99531204,0.00008974549,0.00094738754,0.00008478529,0.00050169625,0.00001929793,0.00025794236,0.00004365229,0.0027434626],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981308,0.0002807578,0.0005886675,0.00040120474,0.00008907559,0.00050948333],"domain_scores_gemma":[0.9989527,0.00017395352,0.00027525172,0.00032840198,0.00024559107,0.000024094228],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005211149,0.0002756638,0.00031164513,0.00014763838,0.0005601078,0.0000662778,0.00031477324,0.0003899348,0.0016056712],"category_scores_gemma":[0.000094454444,0.00026758906,0.00015149948,0.00023806337,0.0002600017,0.00044549923,0.00008371671,0.00031922478,0.0035603472],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016488785,0.00002263929,0.00006288116,0.000024134848,0.00013689169,0.0000070317037,0.001932626,0.00032676393,0.991573,0.00207367,0.0004975723,0.0031779509],"study_design_scores_gemma":[0.00066469907,0.00018319931,0.000051730836,0.00013388126,0.00006141497,0.000014622572,0.0002231935,0.0012230842,0.94277066,0.0013647988,0.052996814,0.00031187877],"about_ca_topic_score_codex":0.00003302019,"about_ca_topic_score_gemma":0.0000056295553,"teacher_disagreement_score":0.053553797,"about_ca_system_score_codex":0.00006527928,"about_ca_system_score_gemma":0.00007572555,"threshold_uncertainty_score":0.99997765},"labels":[],"label_agreement":null},{"id":"W2886812832","doi":"10.1016/j.virusres.2018.08.008","title":"Toll-like receptor (TLR)4 signalling induces myeloid differentiation primary response gene (MYD) 88 independent pathway in avian species leading to type I interferon production and antiviral response","year":2018,"lang":"en","type":"article","venue":"Virus Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Agriculture and Agri-Food Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council","keywords":"Biology; TLR4; Interferon; Toll-like receptor; Receptor; Signal transduction; Lipopolysaccharide; Interferon type I; Cell biology; Immunology; Innate immune system; Genetics","score_opus":0.05398403947859807,"score_gpt":0.3129025149781896,"score_spread":0.2589184754995915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2886812832","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965333,0.00067424675,0.00005748776,0.0008758701,0.00092165335,0.0007070106,0.0000091122765,0.00005614722,0.0001652251],"genre_scores_gemma":[0.9908435,0.00021203682,0.00006393147,0.000053181295,0.00017194636,0.00005287434,0.00006172095,0.000032897773,0.008507962],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99425125,0.0037364746,0.0004944194,0.0006232283,0.00023343065,0.00066117325],"domain_scores_gemma":[0.9985417,0.0005610761,0.00010531044,0.0003711994,0.0003742387,0.000046488887],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.006066814,0.00022631168,0.00031428554,0.0013715983,0.0004943005,0.00011733849,0.0002792278,0.0003404856,0.00024636055],"category_scores_gemma":[0.0018884738,0.0002139309,0.000042581094,0.0007954007,0.00032920975,0.00040284713,0.0003250834,0.0007519563,0.0013366501],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06535385,0.00010575224,0.0007826693,0.000021143096,0.000041633455,0.0000089348205,0.004671164,0.0000020951227,0.9182834,0.00001990382,0.00070964027,0.009999788],"study_design_scores_gemma":[0.0005326844,0.0019587255,0.0903683,0.00017040427,0.000004331163,0.000015968852,0.00069229084,0.000003938216,0.8961873,0.000018943989,0.0098338835,0.00021320008],"about_ca_topic_score_codex":0.00010583855,"about_ca_topic_score_gemma":0.00021750767,"teacher_disagreement_score":0.089585625,"about_ca_system_score_codex":0.0004364902,"about_ca_system_score_gemma":0.00027237617,"threshold_uncertainty_score":0.9994409},"labels":[],"label_agreement":null},{"id":"W2887908790","doi":"10.1016/j.xphs.2018.08.005","title":"Protective Efficacy of Candidate Vaccines Prior to Human Clinical Trials","year":2018,"lang":"en","type":"article","venue":"Journal of Pharmaceutical Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sanofi (Canada)","funders":"Sanofi Pasteur","keywords":"Clinical trial; Vaccine efficacy; Medicine; Immunization; Clinical efficacy; Human use; Immunology; Pharmacology; Vaccination; Biotechnology; Biology; Pathology; Immune system; Internal medicine","score_opus":0.1816586250549008,"score_gpt":0.5165153955090942,"score_spread":0.3348567704541934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2887908790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99612963,0.0004579026,0.00046824935,0.001270948,0.0010405708,0.00029810393,0.0000017664423,0.000006520765,0.0003262778],"genre_scores_gemma":[0.99921876,0.000028853316,0.00016827504,0.0001656379,0.0003202733,0.000002056163,3.0171947e-7,0.0000031353684,0.00009267845],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99669045,0.0015400463,0.0012981733,0.00013919038,0.000105258114,0.0002268714],"domain_scores_gemma":[0.9977144,0.001075338,0.0007402795,0.000085457876,0.0003242021,0.000060319795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.012614573,0.000091524016,0.0005051614,0.00019611187,0.00023895405,0.000019638725,0.00037717778,0.00010399539,0.00071255566],"category_scores_gemma":[0.0049459073,0.000055309014,0.0002019035,0.00030690513,0.0006181381,0.00016736897,0.000068473,0.00027495102,0.00009866065],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022183028,0.00015895309,0.0018034705,0.00000711822,0.00014068079,0.0000025170054,0.0005277827,0.0000026796026,0.9389389,0.00037586573,0.0010905595,0.054733135],"study_design_scores_gemma":[0.0028535374,0.003196561,0.035328098,0.00008946883,0.00010797566,0.00005683561,0.00015424809,0.000009800483,0.93048936,0.00026872073,0.027347837,0.00009757223],"about_ca_topic_score_codex":0.000011287349,"about_ca_topic_score_gemma":0.0000033589831,"teacher_disagreement_score":0.054635562,"about_ca_system_score_codex":0.00001995191,"about_ca_system_score_gemma":0.00018932027,"threshold_uncertainty_score":0.7801985},"labels":[],"label_agreement":null},{"id":"W2892200813","doi":"10.1089/vim.2018.0072","title":"A Comparison of Toll-Like Receptor 5 and 21 Ligands as Adjuvants for a Formaldehyde Inactivated H9N2 Avian Influenza Virus Vaccine in Chickens","year":2018,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph","keywords":"Flagellin; TLR5; Adjuvant; CpG Oligodeoxynucleotide; Immune system; Inactivated vaccine; Vaccination; Antibody; Virology; Biology; Virus; Immunopotentiator; CpG site; Toll-like receptor; Immunology; Microbiology; Receptor; Innate immune system; Gene","score_opus":0.017030133578257084,"score_gpt":0.31225655546297365,"score_spread":0.2952264218847166,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2892200813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99460006,0.003464359,0.000048170958,0.00024048607,0.00078279944,0.0005650164,0.000026023126,0.000056917048,0.00021617823],"genre_scores_gemma":[0.99861366,0.00021046835,0.00009660278,0.00021750868,0.000039345217,0.00007663729,0.0001447993,0.000025987149,0.0005750138],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981147,0.00018996726,0.00080159487,0.00032297877,0.000032951742,0.0005377905],"domain_scores_gemma":[0.9988914,0.00021963628,0.00035733116,0.00033740426,0.00017543025,0.000018782015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033113538,0.00026375052,0.0007107959,0.00043176912,0.0001880743,0.0000117007685,0.00024231391,0.00059041794,0.00023384349],"category_scores_gemma":[0.00032639495,0.00024418667,0.00008451382,0.00024077714,0.000339683,0.00029004738,0.00015701543,0.00035863975,0.00023880588],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008584358,0.0002110258,0.008249624,0.000026011538,0.00023147631,0.0000011420783,0.0025969765,5.5042517e-7,0.96771544,0.00069462747,0.00065409654,0.011034663],"study_design_scores_gemma":[0.005683064,0.0033080732,0.042659067,0.00008396417,0.00003729502,0.000047930058,0.00055037363,0.000032559812,0.90039074,0.00026269213,0.046696156,0.0002480839],"about_ca_topic_score_codex":0.00047492614,"about_ca_topic_score_gemma":0.00024257561,"teacher_disagreement_score":0.06732471,"about_ca_system_score_codex":0.00006941463,"about_ca_system_score_gemma":0.000096218726,"threshold_uncertainty_score":0.9957644},"labels":[],"label_agreement":null},{"id":"W2892956160","doi":"10.1074/jbc.ra118.003501","title":"The effects of CD14 and IL-27 on induction of endotoxin tolerance in human monocytes and macrophages","year":2018,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Canada Foundation for Innovation; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"CD14; Monocyte; Immunology; Biology; Microbiology; Immune system","score_opus":0.0098458575648561,"score_gpt":0.24398990818827093,"score_spread":0.23414405062341484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2892956160","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99522823,0.0044472013,0.0000022889049,0.000057802983,0.000093424474,0.000044436358,0.0000011046693,0.0000017536306,0.00012377159],"genre_scores_gemma":[0.9987847,0.0010608429,0.000010512667,0.000009343508,0.000041165247,0.0000010394366,0.0000011589339,0.0000017138318,0.00008950782],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99944276,0.00009573317,0.00029364543,0.00006452763,0.000019486097,0.00008383643],"domain_scores_gemma":[0.9992765,0.00031250718,0.00028290314,0.00006285118,0.000057386675,0.000007861392],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027758334,0.000064405984,0.00018562494,0.000022302345,0.000052796837,0.0000036830688,0.00007387881,0.00015566195,0.000013851717],"category_scores_gemma":[0.0003238793,0.000036109202,0.000029437108,0.000041098992,0.00040398302,0.0000277392,0.000027053531,0.00018294582,6.042697e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054335716,0.000036757265,0.0017829275,0.000038454436,0.000025389083,0.0000021976264,0.00007877521,2.508686e-7,0.99292415,0.0000294684,0.000044777298,0.004493494],"study_design_scores_gemma":[0.00071303506,0.0007485987,0.03415305,0.000104218096,0.000006199194,0.00006267491,0.00008142386,5.699109e-7,0.9634056,0.00018111427,0.00050859473,0.000034898232],"about_ca_topic_score_codex":0.0000030848603,"about_ca_topic_score_gemma":3.136397e-7,"teacher_disagreement_score":0.032370124,"about_ca_system_score_codex":0.000009228034,"about_ca_system_score_gemma":0.000010288993,"threshold_uncertainty_score":0.14884923},"labels":[],"label_agreement":null},{"id":"W2896114422","doi":"10.1371/journal.pone.0205521","title":"CXCL4 contributes to host defense against acute Pseudomonas aeruginosa lung infection","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Beatrice Hunter Cancer Research Institute; Dalhousie University","funders":"Fundamental Research Funds for the Central Universities; University of Illinois at Urbana-Champaign; Peking Union Medical College; Chinese Academy of Medical Sciences; Chinese Academy of Sciences; Natural Science Foundation of Yunnan Province; National Natural Science Foundation of China; Academy of Medical Sciences","keywords":"Pseudomonas aeruginosa; Chemokine; Microbiology; Platelet; Immunology; Biology; Bacterial pneumonia; Lung; Platelet activation; Inflammation; Medicine; Bacteria; Antibiotics","score_opus":0.016394882908435555,"score_gpt":0.23081089593995877,"score_spread":0.21441601303152322,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896114422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944564,0.00053343026,0.0004716802,0.0009913079,0.00037173158,0.00046950055,0.0000172259,0.00016802206,0.0025206716],"genre_scores_gemma":[0.9957405,0.00020975454,0.00013130646,0.00079144904,0.00011340118,0.0000612719,0.00014384817,0.000018379616,0.0027901058],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988978,0.00017365033,0.00028045732,0.00023848603,0.000047359026,0.00036227694],"domain_scores_gemma":[0.99920756,0.00010530258,0.000092666894,0.0003035215,0.0002657318,0.000025193398],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002498607,0.00016346587,0.0002767182,0.00020384372,0.00029660016,0.000029372377,0.00011780556,0.0002347919,0.00024707182],"category_scores_gemma":[0.00025688286,0.00015740724,0.00006643058,0.00023482683,0.00012796525,0.00015149305,0.000085471256,0.00019168676,0.004845892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00058905897,0.00030290647,0.0045062248,0.000016126562,0.00092456717,0.0000035479682,0.00034361007,3.53614e-7,0.98795444,0.00043403832,0.0040695854,0.00085551786],"study_design_scores_gemma":[0.0010364581,0.00031341045,0.020268729,0.0001342434,0.00022905492,0.00000842846,0.00001980143,0.000017294564,0.9668544,0.000039790004,0.010888431,0.00018993937],"about_ca_topic_score_codex":0.00005379612,"about_ca_topic_score_gemma":0.00002936053,"teacher_disagreement_score":0.021100042,"about_ca_system_score_codex":0.000081943006,"about_ca_system_score_gemma":0.000048135636,"threshold_uncertainty_score":0.99592894},"labels":[],"label_agreement":null},{"id":"W2896487003","doi":"10.1139/cjpp-2018-0027","title":"Two indole-2-carboxamide derivatives attenuate lipopolysaccharide-induced acute lung injury by inhibiting inflammatory response","year":2018,"lang":"en","type":"article","venue":"Canadian Journal of Physiology and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Lipopolysaccharide; Bronchoalveolar lavage; Medicine; Pharmacology; In vivo; Sepsis; Lung; Inflammation; Immunology; Cytokine; Internal medicine; Biology","score_opus":0.009262010338549235,"score_gpt":0.2737996612900038,"score_spread":0.2645376509514546,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896487003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99473935,0.0014878642,0.000017478089,0.0013981516,0.0020357433,0.00017979056,0.000031270098,0.000017360042,0.00009299537],"genre_scores_gemma":[0.99781656,0.0001014493,0.000022695742,0.0013756974,0.00037081694,0.000010336341,0.000019608548,0.000024787927,0.00025805167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99684536,0.0015190452,0.00068360264,0.00026722683,0.00003464184,0.00065009034],"domain_scores_gemma":[0.9983644,0.0004229179,0.0005815977,0.00012455002,0.00032354906,0.00018296999],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010182192,0.00027435776,0.000504634,0.00051873515,0.0005584286,0.000017419825,0.00030700755,0.00037057424,0.0012877326],"category_scores_gemma":[0.00016632627,0.00025752487,0.0001046858,0.00015001219,0.00097143697,0.00032690392,0.000062282816,0.0007987033,0.00009433262],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034045065,0.000016268626,0.00078021066,0.000016410022,0.00061766274,0.00005078719,0.0012450883,0.000001076755,0.98259544,0.00011900853,0.010002875,0.0011506466],"study_design_scores_gemma":[0.002139536,0.00084914156,0.0035962262,0.000041324678,0.00013681279,0.00036449893,0.00019857741,0.000009998174,0.98461616,0.00022270602,0.007576695,0.00024829662],"about_ca_topic_score_codex":0.0003458712,"about_ca_topic_score_gemma":0.00017094612,"teacher_disagreement_score":0.0030772095,"about_ca_system_score_codex":0.00011994487,"about_ca_system_score_gemma":0.001052282,"threshold_uncertainty_score":0.9999877},"labels":[],"label_agreement":null},{"id":"W2896987298","doi":"10.3233/ch-189320","title":"Inhibition of GPR 55 improves dysregulated immune response in experimental sepsis","year":2018,"lang":"en","type":"article","venue":"Clinical Hemorheology and Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Sepsis; Intravital microscopy; Immune system; Proinflammatory cytokine; Microcirculation; Medicine; Cytokine; Immunology; Inflammation; Tumor necrosis factor alpha; Systemic inflammatory response syndrome; Internal medicine","score_opus":0.018928928470292657,"score_gpt":0.31440678790284105,"score_spread":0.2954778594325484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2896987298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99638456,0.0021179782,0.00017042932,0.00030938804,0.0005358784,0.0002517676,0.0000026142436,0.000034851826,0.00019251603],"genre_scores_gemma":[0.9991056,0.000058417114,0.00010479824,0.00012739244,0.000043219596,0.000011934488,0.00011035886,0.000011703267,0.00042659364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975506,0.0009021293,0.00095950026,0.00031996847,0.000026173791,0.00024159846],"domain_scores_gemma":[0.99883956,0.0005026027,0.0003046922,0.0002216613,0.00011336474,0.000018111714],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013221656,0.00015282426,0.00039916622,0.00020118228,0.00012694225,0.0000052677656,0.00007314574,0.00061273,0.00022789203],"category_scores_gemma":[0.00035213074,0.0001504069,0.000103077415,0.00017117395,0.0010403186,0.00016410698,0.00007950019,0.00026690654,0.00015978394],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006335291,0.0001835499,0.0053182724,0.000011722057,0.000052169264,0.0000025279112,0.00069591845,7.56359e-7,0.9815545,0.0004094576,0.000102903774,0.005332939],"study_design_scores_gemma":[0.0023912378,0.00058043026,0.34758034,0.000040572162,0.000020113566,0.00003614561,0.00021163869,0.000053761578,0.64815813,0.0002925756,0.00051567034,0.0001193632],"about_ca_topic_score_codex":0.00004536731,"about_ca_topic_score_gemma":0.0000067130663,"teacher_disagreement_score":0.34226206,"about_ca_system_score_codex":0.00003525427,"about_ca_system_score_gemma":0.00007029872,"threshold_uncertainty_score":0.6133415},"labels":[],"label_agreement":null},{"id":"W2897553891","doi":"10.1164/rccm.201806-1157oc","title":"Cholesteryl Ester Transfer Protein Influences High-Density Lipoprotein Levels and Survival in Sepsis","year":2018,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":102,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research; National Human Genome Research Institute; Canada Foundation for Innovation; Heart and Stroke Foundation of Canada","keywords":"Medicine; Sepsis; Mendelian randomization; Cholesterylester transfer protein; Septic shock; Internal medicine; Cohort; Intensive care unit; High-density lipoprotein; Cholesterol; Lipoprotein; Endocrinology; Genetic variants; Genetics; Gene; Biology; Genotype","score_opus":0.018360359350378753,"score_gpt":0.2891554713807026,"score_spread":0.2707951120303238,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897553891","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942948,0.0033232104,0.00025622404,0.0017227296,0.00020352178,0.00011503273,0.0000027471244,0.0000071552827,0.00007453273],"genre_scores_gemma":[0.99892795,0.00002036048,0.000042979143,0.00080299407,0.00017460925,0.000004287077,9.3978036e-7,0.000008351502,0.000017525725],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984218,0.0005838947,0.00049978885,0.00016981547,0.000094816845,0.00022991006],"domain_scores_gemma":[0.99918413,0.00023532874,0.00008432719,0.0001167666,0.00031628404,0.00006317331],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075898174,0.00015066729,0.00048282824,0.00020119699,0.00011075007,0.00001352415,0.0000991734,0.000100126745,0.00009761801],"category_scores_gemma":[0.00048618903,0.00010778497,0.000035520166,0.00016308657,0.002561877,0.0002071116,0.000026897505,0.00037226232,0.0000059862],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001984612,0.00005135351,0.017831195,0.000116992356,0.00007737396,0.000108044514,0.0062252195,1.7759871e-7,0.68227,0.0011009277,0.000033975884,0.2902001],"study_design_scores_gemma":[0.00470396,0.017800095,0.65487444,0.00118654,0.00015704823,0.00033688307,0.016493946,5.14112e-7,0.29489523,0.00044824765,0.008701839,0.00040127733],"about_ca_topic_score_codex":0.00019038645,"about_ca_topic_score_gemma":0.00007395146,"teacher_disagreement_score":0.63704324,"about_ca_system_score_codex":0.000021851574,"about_ca_system_score_gemma":0.00006899267,"threshold_uncertainty_score":0.94393426},"labels":[],"label_agreement":null},{"id":"W2897938440","doi":"10.1637/11840-041218-reg.1","title":"<i>In Ovo</i>Administration of Innate Immune Stimulants and Protection from Early Chick Mortalities due to Yolk Sac Infection","year":2018,"lang":"en","type":"article","venue":"Avian Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"In ovo; Biology; Antibiotics; Innate immune system; Immune system; Yolk sac; Microbiology; Immunity; Antimicrobial; Immunology; Embryo","score_opus":0.009702674757493784,"score_gpt":0.24322731322773705,"score_spread":0.23352463847024327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2897938440","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99826914,0.0005834841,0.00014740448,0.00013274731,0.00030369565,0.00036430178,0.000060338727,0.00003455643,0.000104318075],"genre_scores_gemma":[0.9993406,0.000038837003,0.0000113478945,0.00004286085,0.000055020635,0.00004790123,0.00010485907,0.0000091364445,0.00034945022],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99917465,0.0001582726,0.0002889876,0.00017969903,0.000034167377,0.00016422464],"domain_scores_gemma":[0.9996012,0.000039415507,0.00010899299,0.00016462221,0.000067070825,0.000018689449],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009600564,0.000113229304,0.00018619298,0.00015299601,0.00009555744,0.000017891876,0.000050605562,0.0001128999,0.00013399354],"category_scores_gemma":[0.00010643388,0.000111008834,0.000037020553,0.00013096273,0.00012500331,0.00028128005,0.000031429456,0.00008395523,0.0001282369],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003035449,0.00021007682,0.048834212,0.000053737665,0.00012568501,0.000008866578,0.0019241833,0.000004224191,0.9350557,0.0002991291,0.000082947314,0.010365816],"study_design_scores_gemma":[0.0005055704,0.00042339077,0.73733264,0.000074446456,0.000026639718,0.000008026781,0.00006683305,0.0000057837124,0.26062605,0.00048765662,0.0003484147,0.000094528536],"about_ca_topic_score_codex":0.0029716922,"about_ca_topic_score_gemma":0.00025455205,"teacher_disagreement_score":0.68849844,"about_ca_system_score_codex":0.000021919259,"about_ca_system_score_gemma":0.000048989314,"threshold_uncertainty_score":0.4526809},"labels":[],"label_agreement":null},{"id":"W2899000252","doi":"10.1038/s41598-018-34760-6","title":"The effects of in ovo administration of encapsulated Toll-like receptor 21 ligand as an adjuvant with Marek’s disease vaccine","year":2018,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University; University of Calgary; University of Guelph","funders":"Ministry of Agriculture, Food and Rural Affairs; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph","keywords":"In ovo; Toll; Adjuvant; Marek's disease; Toll-like receptor; Receptor; Disease; Vaccine adjuvant; Virology; Medicine; Administration (probate law); Immunology; Biology; Internal medicine; Innate immune system; Virus; Political science; Genetics; Embryo","score_opus":0.0037243789755833957,"score_gpt":0.22731917796513681,"score_spread":0.22359479898955342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899000252","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99584794,0.0007111161,0.000007647483,0.000081790684,0.0028173567,0.00039953916,0.0000015376637,0.0000150817905,0.00011798675],"genre_scores_gemma":[0.99654084,0.000020134998,0.000013040778,0.0000064751875,0.0000138597325,0.000016127846,0.00014486439,0.0000068226705,0.0032378535],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987274,0.00018773576,0.00051347323,0.0002983945,0.00008675488,0.00018627012],"domain_scores_gemma":[0.9986183,0.00008577698,0.00042116552,0.0006118345,0.00023702855,0.00002590663],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00096261286,0.00010146863,0.00018215418,0.000121888566,0.0001989254,0.000028409466,0.000107509695,0.00008134117,0.00008195682],"category_scores_gemma":[0.00037147684,0.000064770524,0.00003820475,0.0002833762,0.00033684724,0.00016491079,0.000029293198,0.00007508962,0.000024530005],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017747689,0.00012316651,0.0036080955,0.000042057614,0.000031939155,0.000057011235,0.00062157586,0.000001088197,0.9902615,0.000050235343,0.0011195884,0.0023089827],"study_design_scores_gemma":[0.0004857848,0.00073907775,0.04166452,0.00015062503,0.000027421445,0.00008909911,0.00010886705,0.0000068240183,0.9479135,0.00028055476,0.00845139,0.00008229953],"about_ca_topic_score_codex":0.00003848698,"about_ca_topic_score_gemma":0.0001068034,"teacher_disagreement_score":0.042347953,"about_ca_system_score_codex":0.000017880167,"about_ca_system_score_gemma":0.00031473584,"threshold_uncertainty_score":0.26412654},"labels":[],"label_agreement":null},{"id":"W2899116392","doi":"10.1371/journal.pone.0203376","title":"Novel sequence variants in the TLR6 gene associated with advanced breast cancer risk in the Saudi Arabian population","year":2018,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Breast cancer; Single-nucleotide polymorphism; Allele; Internal medicine; Genotype; Allele frequency; Estrogen receptor; Medicine; Population; Oncology; Genetics; Biology; Cancer; Gynecology; Gene","score_opus":0.028571111017221432,"score_gpt":0.2408646526720261,"score_spread":0.21229354165480468,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2899116392","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99805754,0.00021845526,0.000032507145,0.0010487572,0.000045672547,0.00037143505,0.00004448595,0.000017127406,0.0001640032],"genre_scores_gemma":[0.9991906,0.00012837394,0.0000613124,0.0002789846,0.000032235825,0.000073227384,0.000121578305,0.000008400864,0.000105279694],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99883926,0.00048563947,0.00020973293,0.00016009602,0.00006995176,0.00023533596],"domain_scores_gemma":[0.99934775,0.00015778458,0.0001689103,0.00024212441,0.00007903626,0.000004397737],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006686701,0.000104571285,0.00015665792,0.00006978281,0.0001662806,0.000014973604,0.00021634289,0.0001217518,0.00007373264],"category_scores_gemma":[0.00016850322,0.000061368795,0.000017528173,0.0003247276,0.00009614144,0.00015793933,0.000016312177,0.00027841792,0.00005126247],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00069717114,0.0007366731,0.08203385,0.0000064866354,0.0001709109,0.000003641506,0.0035623247,0.000032864253,0.90967655,0.00012562863,0.00002709088,0.0029268153],"study_design_scores_gemma":[0.0012574178,0.00013434804,0.9761335,0.00017926817,0.00005443407,0.000018068124,0.00020489532,0.00008814077,0.02172234,0.00008026416,0.000025061554,0.00010221677],"about_ca_topic_score_codex":0.0019452329,"about_ca_topic_score_gemma":0.0039555267,"teacher_disagreement_score":0.8940997,"about_ca_system_score_codex":0.00008712877,"about_ca_system_score_gemma":0.000045586105,"threshold_uncertainty_score":0.29406232},"labels":[],"label_agreement":null},{"id":"W2900032055","doi":"10.1177/1753425918808008","title":"Whatever happened to the Shwartzman phenomenon?","year":2018,"lang":"en","type":"review","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Shwartzman phenomenon; Fulminant; Purpura fulminans; Medicine; Immunology; Necrosis; Pathology; Pathogenesis; Sepsis; Dermatology","score_opus":0.04553523366387033,"score_gpt":0.316833970101769,"score_spread":0.2712987364378987,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900032055","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00048151673,0.992212,0.00002045992,0.00025353863,0.0019750106,0.0012356613,0.00004332749,0.00012127904,0.0036571894],"genre_scores_gemma":[0.00033267745,0.9874483,0.000013352759,0.00032173243,0.00015279169,0.00022741918,0.00070985354,0.00006868553,0.010725234],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99613833,0.0019627062,0.0008499913,0.00038313653,0.00006453632,0.00060131814],"domain_scores_gemma":[0.9975023,0.00033485444,0.00041248114,0.0015795442,0.00014111817,0.00002970118],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0014612048,0.0005509299,0.001206417,0.0003001225,0.0007910849,0.00009436132,0.0014778632,0.00067622453,0.0012285073],"category_scores_gemma":[0.00021210968,0.0003468722,0.00043663356,0.00051410164,0.00026483924,0.00017931857,0.00065731065,0.0011031232,0.031257622],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009998243,0.00008438391,5.023618e-7,0.0009596183,0.00079808687,0.0000039088686,0.0010773821,2.607614e-7,0.00027949747,0.0002633395,0.02729062,0.96914244],"study_design_scores_gemma":[0.0002294019,0.00015908928,0.000016644688,0.002147038,0.00032177355,0.000073576455,0.000086998916,1.13129e-7,0.0005504423,0.000042600783,0.9959555,0.00041682224],"about_ca_topic_score_codex":0.00015107228,"about_ca_topic_score_gemma":0.000033299228,"teacher_disagreement_score":0.9687256,"about_ca_system_score_codex":0.00015362793,"about_ca_system_score_gemma":0.00028324558,"threshold_uncertainty_score":0.9998983},"labels":[],"label_agreement":null},{"id":"W2900063234","doi":"10.1186/s13223-018-0305-2","title":"Unraveling the enigma: elucidating the relationship between the physicochemical properties of aluminium-based adjuvants and their immunological mechanisms of action","year":2018,"lang":"en","type":"review","venue":"Allergy Asthma and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Adjuvant; Aluminium; Vaccine adjuvant; Cytotoxicity; Chemistry; Immunology; Biology; Biochemistry; In vitro; Organic chemistry","score_opus":0.12101399762962585,"score_gpt":0.3437274674330694,"score_spread":0.2227134698034436,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900063234","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.082374364,0.9153419,0.0005068664,0.00045218962,0.0005476808,0.0006891176,0.000016345173,0.000030127374,0.000041415526],"genre_scores_gemma":[0.43275243,0.56679267,0.000023478591,0.00004386882,0.000107846034,0.000071799856,0.000099313234,0.000027339425,0.00008122894],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99342644,0.0037540998,0.0018700237,0.00048572937,0.000071594564,0.00039209236],"domain_scores_gemma":[0.98809487,0.009357289,0.0015342919,0.00082286575,0.00017502939,0.000015644338],"candidate_categories":["sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0023748993,0.00046866137,0.0016145518,0.00009345286,0.0006465024,0.00002371323,0.00077815657,0.0013473639,0.000044249675],"category_scores_gemma":[0.001950811,0.00019814195,0.0005590628,0.00023038611,0.0037332505,0.0000821665,0.000473742,0.001679544,0.00003062801],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008822142,0.00023338047,0.00011317994,0.00081636495,0.0051567084,8.200784e-7,0.0007769703,5.7848206e-7,0.021541016,0.0068403296,0.0000904986,0.96354795],"study_design_scores_gemma":[0.005502358,0.005054596,0.023450026,0.012057174,0.002847337,0.00044885854,0.006566178,0.00007399745,0.13909693,0.0064452873,0.796575,0.0018822387],"about_ca_topic_score_codex":0.00005134741,"about_ca_topic_score_gemma":0.000008680405,"teacher_disagreement_score":0.9616657,"about_ca_system_score_codex":0.00002196471,"about_ca_system_score_gemma":0.0002276785,"threshold_uncertainty_score":0.9999491},"labels":[],"label_agreement":null},{"id":"W2900166117","doi":"","title":"Lipid encapsulation promotes co-localization of methylated CpG ODN and TLR9 in late endosomes: A new model for the immunostimulatory activity of CpG DNA","year":2008,"lang":"en","type":"article","venue":"Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Arbutus Biopharma (Canada); University of British Columbia","funders":"","keywords":"TLR9; CpG Oligodeoxynucleotide; CpG site; Toll-Like Receptor 9; DNA methylation; Immune system; Methylation; Innate immune system; Cell biology; Biology; Chemistry; DNA; Cancer research; Molecular biology; Immunology; Biochemistry; Gene; Gene expression","score_opus":0.09721256468504698,"score_gpt":0.3786951196497882,"score_spread":0.2814825549647412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900166117","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881603,0.004050923,0.006626036,0.0002177454,0.0000580045,0.000823337,0.00001737584,0.0000107664655,0.00003548526],"genre_scores_gemma":[0.99745035,0.0014247078,0.000021900603,0.000006916019,0.000014761825,0.00014200242,0.00003191915,0.00001231397,0.0008951143],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988311,0.00036888217,0.00029506165,0.00017312894,0.000086670036,0.00024518065],"domain_scores_gemma":[0.99872035,0.0006708877,0.00012856652,0.00021841015,0.00024874063,0.000013040338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095067744,0.00009395421,0.00022814808,0.00024164756,0.00018598826,0.0000051763814,0.00013800904,0.00017513457,0.000067393084],"category_scores_gemma":[0.0003635912,0.00007269144,0.0000462803,0.00029771723,0.0003307716,0.00016894421,0.000049553444,0.00023844691,0.0000034653126],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014804914,0.000048180536,0.0006729568,0.00007220448,0.00007842621,2.682758e-7,0.003592982,0.00734442,0.9779328,0.0001582605,0.0002507466,0.008368225],"study_design_scores_gemma":[0.0017309927,0.00016391155,0.006756709,0.00008172725,0.00001338334,0.0000020443754,0.000052635798,0.052751224,0.93730146,0.0004755409,0.0005977978,0.00007255558],"about_ca_topic_score_codex":0.0009922636,"about_ca_topic_score_gemma":0.00005502172,"teacher_disagreement_score":0.045406803,"about_ca_system_score_codex":0.00007230582,"about_ca_system_score_gemma":0.0004715534,"threshold_uncertainty_score":0.2964271},"labels":[],"label_agreement":null},{"id":"W2900767667","doi":"10.2147/ott.s168478","title":"Potential role of Toll-like receptor 2 expression and polymorphisms in colon cancer susceptibility in the Saudi Arabian population","year":2018,"lang":"en","type":"article","venue":"OncoTargets and Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Deanship of Scientific Research, King Saud University; King Saud University","keywords":"Colorectal cancer; Toll-like receptor; Toll; Medicine; Oncology; Cancer research; Receptor; Internal medicine; Traditional medicine; Genetics; Cancer; Bioinformatics; Immunology; Biology; Innate immune system","score_opus":0.007153032326777952,"score_gpt":0.2460535840700643,"score_spread":0.23890055174328637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2900767667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98893195,0.010201027,0.000003768742,0.00033630346,0.00020557325,0.00022875595,0.0000048952365,0.0000058651467,0.00008184128],"genre_scores_gemma":[0.997377,0.0023353873,0.000019004936,0.00008697026,0.00003541499,0.000016924336,0.00003279104,0.0000051215998,0.00009138764],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9991753,0.0002822263,0.00021618624,0.00015515041,0.000029540966,0.00014156234],"domain_scores_gemma":[0.9997165,0.0000392456,0.0000901218,0.00012297183,0.00002426529,0.0000068618074],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003695156,0.00008791508,0.00015954438,0.00006992272,0.00009217822,0.000008141887,0.00006428597,0.00013333761,0.00027612594],"category_scores_gemma":[0.0000102124295,0.000058791007,0.000022020335,0.00007202578,0.00012922833,0.00009688392,0.000018208746,0.000103724014,0.0000037544353],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010707057,0.000067899346,0.07937678,0.0000029424925,0.000008962159,3.49736e-7,0.002361219,0.000001072043,0.8836474,0.0000598324,0.000083986146,0.03331886],"study_design_scores_gemma":[0.0019562962,0.0004275685,0.741873,0.000056754732,0.000004208255,0.0000058978408,0.00043049216,0.000026334525,0.24211426,0.0006060575,0.012388446,0.000110678644],"about_ca_topic_score_codex":0.0017488106,"about_ca_topic_score_gemma":0.0007706474,"teacher_disagreement_score":0.6624962,"about_ca_system_score_codex":0.00001812694,"about_ca_system_score_gemma":0.000017738039,"threshold_uncertainty_score":0.30233854},"labels":[],"label_agreement":null},{"id":"W2901038487","doi":"10.3390/v10110635","title":"The In Ovo Delivery of CpG Oligonucleotides Protects against Infectious Bronchitis with the Recruitment of Immune Cells into the Respiratory Tract of Chickens","year":2018,"lang":"en","type":"article","venue":"Viruses","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; University of Calgary","funders":"Alberta Agriculture and Forestry; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council","keywords":"In ovo; Biology; Immune system; Infectious bronchitis virus; Respiratory tract; Immunology; CpG site; Embryo; Respiratory system; Virology; Virus; Gene; Gene expression; Cell biology","score_opus":0.02127093028920012,"score_gpt":0.2522070859695799,"score_spread":0.23093615568037978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901038487","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99397457,0.0044206018,0.000008881881,0.00012201874,0.00014536313,0.0007996874,0.000005678918,0.000012368063,0.0005108566],"genre_scores_gemma":[0.9990861,0.0005897152,0.000007635056,0.00013783642,0.000019655807,0.000097910284,0.0000017963511,0.000012145338,0.000047247035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854654,0.000625608,0.0004695511,0.00011869401,0.000057382593,0.00018224916],"domain_scores_gemma":[0.9984525,0.00051915215,0.00044437556,0.00044953468,0.0001291913,0.0000052580194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082398596,0.00012891334,0.00023032224,0.00008972562,0.00023704734,0.0000078418525,0.0002900036,0.00010403945,0.000025935562],"category_scores_gemma":[0.00009987076,0.00006018457,0.00007410964,0.00021324873,0.0011075707,0.000087717206,0.000075001204,0.00020984642,0.000023900828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006994293,0.00009772682,0.00086436654,0.000024269057,0.00013290351,6.6373656e-7,0.0027899563,0.000019459449,0.9808785,0.00046513882,0.00013188427,0.01389571],"study_design_scores_gemma":[0.0006449421,0.0008566998,0.03750596,0.00012410013,0.000021381613,0.000003622369,0.0008138189,0.0000013965152,0.9384711,0.00005270488,0.021435019,0.000069302674],"about_ca_topic_score_codex":0.0010803244,"about_ca_topic_score_gemma":0.00067511376,"teacher_disagreement_score":0.04240744,"about_ca_system_score_codex":0.000026464217,"about_ca_system_score_gemma":0.0001472804,"threshold_uncertainty_score":0.40808904},"labels":[],"label_agreement":null},{"id":"W2901231310","doi":"10.1091/mbc.e18-07-0423","title":"Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level","year":2018,"lang":"en","type":"article","venue":"Molecular Biology of the Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institute of Standards and Technology; Stanford Research Computing Center, Stanford University; National Institutes of Health; Rensselaer Polytechnic Institute","keywords":"Biology; Immune system; Innate immune system; Cell biology; Transcription factor; Tumor necrosis factor alpha; Cytokine; Immunology; Cell; Secretion; Gene; Genetics; Biochemistry","score_opus":0.013403346956124326,"score_gpt":0.22874477408449562,"score_spread":0.2153414271283713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901231310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99389493,0.0035774738,0.0001801602,0.00027487756,0.0011238799,0.00024740264,0.0000152076655,0.0000104025285,0.00067565776],"genre_scores_gemma":[0.99930197,0.000026692274,0.00004363452,0.000052476793,0.000029312492,0.000005188575,0.000038143757,0.000012938314,0.00048963225],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868953,0.00052691373,0.00035281727,0.00018261185,0.000027914899,0.00022022049],"domain_scores_gemma":[0.9990383,0.000088535926,0.0003811908,0.00034832724,0.00013554207,0.000008140627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033274945,0.00015004292,0.00026279557,0.000046118268,0.00022997173,0.000006067259,0.00033051963,0.00027573865,0.00010163332],"category_scores_gemma":[0.00008694455,0.00009175639,0.00009383067,0.00009225412,0.001399444,0.000029826677,0.00036602613,0.0001492641,0.000026739232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006951381,0.00007466228,0.00011398433,0.00002777911,0.000047116755,3.7279096e-7,0.00050909485,4.2955384e-7,0.9974285,0.00011486812,0.00007509729,0.0009129516],"study_design_scores_gemma":[0.001757875,0.0004857963,0.0013296641,0.000023411401,0.000054345095,0.00001163504,0.00006023343,0.0000028268605,0.9924674,0.0002230862,0.0034820097,0.00010169488],"about_ca_topic_score_codex":0.00003185849,"about_ca_topic_score_gemma":0.0000042880606,"teacher_disagreement_score":0.0054070433,"about_ca_system_score_codex":0.000018720128,"about_ca_system_score_gemma":0.00006025628,"threshold_uncertainty_score":0.51563096},"labels":[],"label_agreement":null},{"id":"W2901255373","doi":"10.1007/s00134-018-5463-7","title":"Polymyxin B hemoperfusion in endotoxemic septic shock patients without extreme endotoxemia: a post hoc analysis of the EUPHRATES trial","year":2018,"lang":"en","type":"article","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":239,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of Alberta; Iridian Spectral Technologies (Canada); St. Michael's Hospital","funders":"","keywords":"Medicine; Hemoperfusion; Septic shock; Post-hoc analysis; Anesthesia; Polymyxin; Mean arterial pressure; Polymyxin B; Clinical endpoint; Shock (circulatory); Internal medicine; Randomized controlled trial; Sepsis; Blood pressure; Hemodialysis; Antibiotics; Heart rate","score_opus":0.013387729359960616,"score_gpt":0.25688076416775785,"score_spread":0.24349303480779724,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2901255373","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9943097,0.002209622,0.000008309658,0.0008179254,0.001350622,0.0007422437,0.000015865618,0.000019620456,0.00052606774],"genre_scores_gemma":[0.99761325,0.000058637917,0.0000034987181,0.0012855725,0.00009089863,0.000027234593,0.00027576828,0.000014590341,0.00063055253],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982482,0.0004027603,0.00065087347,0.0002908274,0.000112219706,0.0002951094],"domain_scores_gemma":[0.99610734,0.00024643794,0.00031177653,0.0004558038,0.0028593303,0.000019288058],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024160682,0.00021701187,0.0006540439,0.00055833673,0.00010969479,0.0000039558317,0.00028572403,0.00022837624,0.00063670415],"category_scores_gemma":[0.0026152574,0.0001307397,0.00018714795,0.0008111456,0.00065079756,0.0000663912,0.000132894,0.00029859287,0.0000613698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022541905,0.000044380024,0.030034075,0.000017188706,0.00048562096,0.0000037486332,0.012736719,0.0000017143607,0.9288686,0.000017181179,0.001423124,0.0038257788],"study_design_scores_gemma":[0.058090553,0.005882209,0.079251274,0.0007392273,0.0017273909,0.000022464117,0.030893303,0.00006608418,0.8187319,0.000015480322,0.004217685,0.00036239857],"about_ca_topic_score_codex":0.00077439967,"about_ca_topic_score_gemma":0.0005376746,"teacher_disagreement_score":0.110136636,"about_ca_system_score_codex":0.00012167503,"about_ca_system_score_gemma":0.00010037687,"threshold_uncertainty_score":0.6971464},"labels":[],"label_agreement":null},{"id":"W2902422036","doi":"10.1007/s00134-018-5481-5","title":"Treatment with a polymyxin B filter to capture endotoxin in sepsis patients: is there a signal for therapeutic efficacy?","year":2018,"lang":"en","type":"editorial","venue":"Intensive Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Medicine; Pain medicine; Anesthesiology; Polymyxin; Polymyxin B; Sepsis; Intensive care medicine; Anesthesia; Internal medicine; Antibiotics; Microbiology","score_opus":0.010802181288488878,"score_gpt":0.2692348856688213,"score_spread":0.25843270438033245,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2902422036","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.118631385,0.041736897,0.00044101587,0.011694015,0.8144265,0.009941505,0.0021741863,0.00017808467,0.0007764337],"genre_scores_gemma":[0.5453944,0.0010857292,0.0000843536,0.01583661,0.38016132,0.0033876465,0.026237074,0.00050160865,0.027311258],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99798304,0.00022537367,0.00051113276,0.0006183451,0.00014715978,0.0005149715],"domain_scores_gemma":[0.9939823,0.0011289652,0.0002543023,0.0004595201,0.004133817,0.000041086114],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000108269036,0.0005805576,0.00097655714,0.00038885913,0.000100366684,0.000011881655,0.00026152236,0.0009961334,0.00065639016],"category_scores_gemma":[0.0007881286,0.00035039076,0.0001627804,0.0001775314,0.00026566137,0.00004351956,0.000045863188,0.00046862074,0.0001774984],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007730573,0.00006983378,0.00011130731,0.000074505675,0.000692581,0.000022892122,0.027842429,3.8418662e-7,0.009900749,0.0000019033984,0.94492614,0.008626697],"study_design_scores_gemma":[0.011057809,0.013311171,0.00018414372,0.0012280686,0.00037592926,0.000007423245,0.009085441,7.5492306e-7,0.026949948,0.00000534362,0.9374173,0.00037664],"about_ca_topic_score_codex":0.00084530987,"about_ca_topic_score_gemma":0.0002878145,"teacher_disagreement_score":0.43426517,"about_ca_system_score_codex":0.00049650564,"about_ca_system_score_gemma":0.00031446433,"threshold_uncertainty_score":0.9998948},"labels":[],"label_agreement":null},{"id":"W2903669594","doi":"10.1093/jas/sky404.387","title":"357 Lipopolysaccharide induces a pro-inflammatory response in isolated ruminal epithelial cells.","year":2018,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Lipopolysaccharide; CXCL1; Chemokine; Inflammation; CXCL2; Interleukin 8; Flow cytometry; Biology; Propidium iodide; Proinflammatory cytokine; Tumor necrosis factor alpha; Immune system; Immunology; Molecular biology; Andrology; Chemistry; Programmed cell death; Apoptosis; Medicine; Biochemistry","score_opus":0.012919838793120645,"score_gpt":0.26387694649709875,"score_spread":0.2509571077039781,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2903669594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99832445,0.00021290642,0.000059245944,0.00036798458,0.0007862126,0.000098512835,0.0000012753527,0.000012105285,0.00013729546],"genre_scores_gemma":[0.99953175,0.00002472456,0.000101229474,0.0000620696,0.00012331714,0.0000013937116,2.2093806e-7,0.0000065688746,0.0001487326],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832445,0.00031582266,0.00061866926,0.00018321938,0.00014602742,0.00041178623],"domain_scores_gemma":[0.998844,0.00012940353,0.00046269826,0.00014947478,0.00037121394,0.000043186763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0037910705,0.00012814213,0.00022699856,0.00061477383,0.00026157926,0.00005122792,0.00056551414,0.00014256424,0.00018770747],"category_scores_gemma":[0.0005427888,0.000099912766,0.00007407973,0.00047265412,0.0009864127,0.0008175801,0.00009858636,0.00040888906,0.00025015953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.016631646,0.000057633773,0.00034977298,0.0000031575935,0.000012059347,0.000040956045,0.0013841531,0.0000013280182,0.9802757,0.00013396298,0.00008738611,0.0010222585],"study_design_scores_gemma":[0.00074973836,0.0034887367,0.038395207,0.00006739463,0.000008427559,0.00040804007,0.0003602416,0.00003321108,0.9542572,0.00004901442,0.0020650614,0.00011774694],"about_ca_topic_score_codex":0.00002419801,"about_ca_topic_score_gemma":0.000005835255,"teacher_disagreement_score":0.038045436,"about_ca_system_score_codex":0.00010367809,"about_ca_system_score_gemma":0.00084756076,"threshold_uncertainty_score":0.40743244},"labels":[],"label_agreement":null},{"id":"W2904097792","doi":"10.1152/physrev.00065.2017","title":"Innate Immune Signaling and Its Role in Metabolic and Cardiovascular Diseases","year":2018,"lang":"en","type":"review","venue":"Physiological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":97,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Innate immune system; Biology; Immune system; Innate lymphoid cell; Inflammation; Pattern recognition receptor; Immunology; CCL18; Toll-like receptor; Acquired immune system; Transcription factor; Cell biology; Signal transduction; Receptor; Classical complement pathway; Genetics; Gene; Complement system","score_opus":0.04988921042411643,"score_gpt":0.30351084816759777,"score_spread":0.25362163774348134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904097792","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0023280866,0.99624956,0.0000017519842,0.000004934912,0.00013318675,0.001205628,0.000016149159,0.00003097216,0.000029721456],"genre_scores_gemma":[0.0010186766,0.9981818,0.00001099636,0.00002895174,0.00008393821,0.0003376183,0.00021429287,0.000022717617,0.000101016914],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99556965,0.0023612157,0.0010184806,0.0006248764,0.000038178918,0.00038762402],"domain_scores_gemma":[0.9989327,0.00023172823,0.00034246835,0.00042166773,0.000037277303,0.000034148583],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010114054,0.0005033484,0.003912359,0.00015636609,0.00012575687,0.000023529023,0.0002492023,0.00048553478,0.00014255909],"category_scores_gemma":[0.0007177221,0.00030701517,0.0008231942,0.00025330365,0.00018146154,0.00011309114,0.00029798114,0.00047842678,0.0006012753],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003086034,0.000054232067,0.0000015521214,0.0049688155,0.00056556397,0.000005237492,0.00005090009,1.9682435e-7,0.0045319153,0.00030416774,0.0003072148,0.9891794],"study_design_scores_gemma":[0.00023673601,0.000079573525,0.00016277024,0.004737888,0.0009068739,0.000030392457,0.0000069301086,8.8690115e-7,0.00017819386,0.000106865555,0.9932067,0.00034623584],"about_ca_topic_score_codex":0.00000939945,"about_ca_topic_score_gemma":2.905167e-7,"teacher_disagreement_score":0.9928994,"about_ca_system_score_codex":0.000017069528,"about_ca_system_score_gemma":0.000043539836,"threshold_uncertainty_score":0.9999382},"labels":[],"label_agreement":null},{"id":"W2904135173","doi":"10.1096/fasebj.31.1_supplement.lb643","title":"Interactive Role of TLR4 and TLR2 in Cardiac Functions During Stressful Conditions","year":2017,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"TLR2; TLR4; Downregulation and upregulation; Tumor necrosis factor alpha; Receptor; Fibrosis; Medicine; Interleukin; Inflammation; Knockout mouse; Ischemia; Apoptosis; Toll-like receptor; Endocrinology; Internal medicine; Cytokine; Biology; Innate immune system","score_opus":0.006441535602265272,"score_gpt":0.23744288635004518,"score_spread":0.23100135074777992,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904135173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9964,0.0010051433,0.0000071842246,0.0002601476,0.0003315142,0.00006380823,0.000019699055,0.00000393042,0.001908545],"genre_scores_gemma":[0.9987934,0.0001590942,0.0000024244898,0.000005342346,0.000033409553,0.0000038151275,0.000008377184,0.0000036940055,0.0009904272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946284,0.0001834109,0.00016647585,0.00005386279,0.00001966065,0.00011374553],"domain_scores_gemma":[0.9994765,0.00009139083,0.0002046408,0.00017449164,0.000044252563,0.000008736066],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024796583,0.00005663111,0.00012233932,0.00008200769,0.0006464002,0.000035893,0.00013668944,0.000053032072,0.00017525238],"category_scores_gemma":[0.00009823428,0.000040221315,0.000053086533,0.000019279034,0.00017417727,0.00023403302,0.000046591562,0.0003084004,0.000040547417],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019996424,0.000019665118,0.01237449,0.0000026167636,0.000108065775,0.0000022654694,0.0011447684,0.00001045921,0.9845462,0.000182547,0.000082952094,0.0013260406],"study_design_scores_gemma":[0.0005781162,0.00004032673,0.36518985,0.000055958466,0.00003036451,0.00013498754,0.0035771609,0.0000039825986,0.62943065,0.00021699959,0.00069727487,0.000044322158],"about_ca_topic_score_codex":0.00007527634,"about_ca_topic_score_gemma":0.000020028383,"teacher_disagreement_score":0.3551155,"about_ca_system_score_codex":0.00002048299,"about_ca_system_score_gemma":0.000030701005,"threshold_uncertainty_score":0.49716532},"labels":[],"label_agreement":null},{"id":"W2904619664","doi":"10.1016/j.abb.2018.12.022","title":"NOD1 and NOD2 in inflammation, immunity and disease","year":2018,"lang":"en","type":"review","venue":"Archives of Biochemistry and Biophysics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":223,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research","keywords":"NOD2; NOD1; Nod; Peptidoglycan; Innate immune system; Biology; Inflammation; Immunology; Pattern recognition receptor; Inflammatory bowel disease; Disease; Immune system; Autophagy; Acquired immune system; Genetics; Medicine; Gene; Pathology","score_opus":0.011226639458023449,"score_gpt":0.2526341025253611,"score_spread":0.24140746306733768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904619664","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.12686013,0.87271386,0.0000036069057,0.00003301939,0.000032871554,0.0001643014,0.000049614486,0.000008494511,0.00013408498],"genre_scores_gemma":[0.021157691,0.97806245,0.000028794733,0.0000048293323,0.000042381384,0.000013903779,0.0004007215,0.000010847081,0.00027836638],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990639,0.0001335013,0.0003867531,0.00024754406,0.00001918049,0.00014911893],"domain_scores_gemma":[0.9992654,0.00019224525,0.00024829985,0.00024350637,0.000016523207,0.000034058987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000101217105,0.00023534233,0.00057757687,0.000081505445,0.000086755186,0.000013345625,0.00011120462,0.00019155734,0.0000047322105],"category_scores_gemma":[0.0001001502,0.00019838488,0.000081697515,0.00007922469,0.0006315172,0.000058096673,0.00019634518,0.00022913769,0.000004858574],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017208303,0.000053089247,0.00004662104,0.01532082,0.00016187194,0.0000025667925,0.0003338123,1.145418e-8,0.13748144,0.00019650704,0.000028358347,0.84620285],"study_design_scores_gemma":[0.0023321148,0.00026850292,0.0016066227,0.03280924,0.0011956336,0.00013639567,0.0002451694,0.000011458743,0.37850764,0.004053869,0.5772443,0.0015890388],"about_ca_topic_score_codex":0.000015286694,"about_ca_topic_score_gemma":6.693015e-7,"teacher_disagreement_score":0.8446138,"about_ca_system_score_codex":0.000006455239,"about_ca_system_score_gemma":0.000114014125,"threshold_uncertainty_score":0.80899006},"labels":[],"label_agreement":null},{"id":"W2904658243","doi":"10.1074/jbc.ra118.004300","title":"Leucine-rich repeats and calponin homology containing 4 (Lrch4) regulates the innate immune response","year":2018,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Environmental Health Sciences; National Institutes of Health","keywords":"Innate immune system; Ectodomain; Biology; Cell biology; Leucine-rich repeat; Lipid raft; Receptor; Pattern recognition receptor; TLR3; Calponin; CD14; Immune receptor; Toll-like receptor; Signal transduction; Genetics; Actin","score_opus":0.016204517992846303,"score_gpt":0.250275806850283,"score_spread":0.2340712888574367,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2904658243","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99067783,0.006996146,0.000026214098,0.0016959198,0.00022710652,0.00006165351,0.00000202367,0.000016084447,0.00029703105],"genre_scores_gemma":[0.997869,0.00032968353,0.000055950142,0.0001615477,0.00016902626,0.0000029117557,0.00000881708,0.0000073897245,0.0013956361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99830437,0.00058910594,0.0006165258,0.00017047877,0.000039965253,0.000279566],"domain_scores_gemma":[0.99830496,0.0007084569,0.00048109377,0.00023292418,0.00024599757,0.000026559148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002108828,0.00016139445,0.0003498574,0.000045575496,0.00025758124,0.000019964365,0.00028931312,0.0004083468,0.0003040498],"category_scores_gemma":[0.001727833,0.00008969783,0.00010241491,0.000109709465,0.00087602745,0.000055200097,0.00014242071,0.000518406,0.000029128387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0076626963,0.000029102996,0.00091908046,0.0000053241283,0.00011921029,0.000029801875,0.0002843958,6.3615687e-7,0.98863626,0.000021775588,0.0004967845,0.001794914],"study_design_scores_gemma":[0.0010610179,0.0011571866,0.047148954,0.000046798326,0.000027441045,0.002967128,0.0004390663,0.0000023575972,0.93188554,0.00020589135,0.014939155,0.000119445394],"about_ca_topic_score_codex":0.0000051533752,"about_ca_topic_score_gemma":2.769522e-7,"teacher_disagreement_score":0.056750722,"about_ca_system_score_codex":0.000034819073,"about_ca_system_score_gemma":0.000082421066,"threshold_uncertainty_score":0.36577713},"labels":[],"label_agreement":null},{"id":"W2909958736","doi":"10.1097/mol.0000000000000577","title":"Molecular regulation of plasma lipid levels during systemic inflammation and sepsis","year":2019,"lang":"en","type":"review","venue":"Current Opinion in Lipidology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":67,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Systemic inflammation; Inflammation; Sepsis; Medicine; Immunology","score_opus":0.07215265134214487,"score_gpt":0.3399888854371529,"score_spread":0.267836234095008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2909958736","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.010111315,0.95947516,0.000057756966,0.000017172082,0.029149862,0.0010859481,0.000028342798,0.000035692206,0.000038764127],"genre_scores_gemma":[0.0025601764,0.9954906,0.000011244978,6.818251e-7,0.00088201836,0.00012340667,0.0007976181,0.000037665966,0.00009657648],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963901,0.001293033,0.0014427835,0.00047934466,0.00005951449,0.00033519062],"domain_scores_gemma":[0.99797446,0.00038384594,0.001088061,0.00044851887,0.00008871594,0.000016393453],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00051464187,0.00040223653,0.0016746474,0.0008817881,0.000057454345,0.000011187138,0.00023178352,0.00093616435,0.00008444769],"category_scores_gemma":[0.00019034298,0.00037844083,0.00023849389,0.00029384243,0.00014431975,0.00016610292,0.00017150893,0.00054805045,0.00024820046],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015532433,0.000054165503,0.000075458825,0.08589148,0.0002769913,6.833326e-8,0.0005060297,0.00006297908,0.025004202,0.0023094898,0.0005621723,0.8851016],"study_design_scores_gemma":[0.0013434169,0.000106558946,0.00037841458,0.027621882,0.00020266349,0.00024296262,0.00003895067,0.000019159734,0.0016285297,0.00003143511,0.9679485,0.00043751323],"about_ca_topic_score_codex":0.000005792755,"about_ca_topic_score_gemma":5.2339203e-7,"teacher_disagreement_score":0.96738636,"about_ca_system_score_codex":0.00013347415,"about_ca_system_score_gemma":0.00018810376,"threshold_uncertainty_score":0.9998667},"labels":[],"label_agreement":null},{"id":"W2910926282","doi":"10.3889/oamjms.2018.369","title":"Evaluation of Serum Interleukin-6 Levels in the Renal Transplant Recipients: A Systematic Review and Meta-Analysis of Case-Control Studies.","year":2019,"lang":"en","type":"review","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Meta-analysis; Renal transplant; Cochrane Library; Internal medicine; Confidence interval; Transplantation; Gastroenterology","score_opus":0.2567042906207979,"score_gpt":0.36817656814477656,"score_spread":0.11147227752397865,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2910926282","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00011948123,0.9908135,0.000006187489,0.00005994078,0.00007836379,0.00848403,0.0004055326,0.0000037801121,0.000029170928],"genre_scores_gemma":[0.035040624,0.95862436,9.356821e-7,0.000053840133,0.000002453044,0.0060394634,0.00006603524,0.000010361886,0.00016191998],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.988459,0.008894683,0.0019842486,0.0002749478,0.00016775193,0.00021938846],"domain_scores_gemma":[0.99599504,0.0014745895,0.0015687732,0.0006141305,0.0003401188,0.0000073352276],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01773823,0.00029800477,0.0069747423,0.00055041054,0.00003107509,0.0000063950506,0.00027797313,0.00023421498,0.000089175184],"category_scores_gemma":[0.0010822385,0.00015106518,0.0014161087,0.0006602593,0.00008638929,0.00007492266,0.000027632836,0.0002526258,0.000007742708],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000015341973,0.000045590965,7.9940276e-7,0.41956556,0.50967544,0.000009706402,0.0007341826,0.0000024907938,0.0000013164354,0.000025644162,0.000029625724,0.06989428],"study_design_scores_gemma":[0.00040794024,0.000024056331,0.000108559936,0.014978974,0.9827591,0.00033413002,0.00006588892,0.0000021276555,0.0000062746417,0.0000042438087,0.0011807139,0.00012797088],"about_ca_topic_score_codex":0.000016677659,"about_ca_topic_score_gemma":0.000050793213,"teacher_disagreement_score":0.47308365,"about_ca_system_score_codex":0.00010038588,"about_ca_system_score_gemma":0.00008711205,"threshold_uncertainty_score":0.6160259},"labels":[],"label_agreement":null},{"id":"W2911391424","doi":"10.3390/v11020093","title":"Class A Scavenger Receptors Are Used by Frog Virus 3 During Its Cellular Entry","year":2019,"lang":"en","type":"article","venue":"Viruses","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Research, Innovation and Science","keywords":"Biology; Ranavirus; Receptor; Virus; Scavenger receptor; Cell culture; Herpes simplex virus; Viral entry; Cell biology; Virology; Viral replication; Genetics; Biochemistry","score_opus":0.011289118929775138,"score_gpt":0.21706391563200664,"score_spread":0.2057747967022315,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911391424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903005,0.00696404,0.000004953048,0.00011419818,0.0014572546,0.00025281252,0.000031832016,0.00012576759,0.0007486951],"genre_scores_gemma":[0.9809582,0.0003107008,0.000004495629,0.00023098638,0.000045195247,0.000019711493,0.000075620075,0.000028890834,0.018326152],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988229,0.00023176109,0.00027845817,0.0002705722,0.000048263017,0.0003480306],"domain_scores_gemma":[0.999388,0.00008346387,0.00016387748,0.00030789172,0.000037648537,0.000019117455],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001428517,0.00018830517,0.00025777123,0.000112019414,0.00014300925,0.000025207071,0.00018739156,0.00030280827,0.0041360515],"category_scores_gemma":[0.00005639945,0.0001737233,0.00009181167,0.00011051559,0.000050342343,0.00026104227,0.00007195758,0.000248412,0.016493265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033314427,0.00006229631,0.0032241447,0.000028891372,0.000106430976,0.0000033832398,0.0003714572,0.0000027570584,0.9869296,0.00004306368,0.008655722,0.00023912633],"study_design_scores_gemma":[0.0008511728,0.000043547498,0.0013524251,0.000045876826,0.000014906894,0.0000046002788,0.00018672868,0.0000014677286,0.71735907,0.0000033325232,0.27997732,0.00015954823],"about_ca_topic_score_codex":0.00005138285,"about_ca_topic_score_gemma":0.0000051794373,"teacher_disagreement_score":0.2713216,"about_ca_system_score_codex":0.000051355968,"about_ca_system_score_gemma":0.000029815414,"threshold_uncertainty_score":0.9967743},"labels":[],"label_agreement":null},{"id":"W2911634460","doi":"10.1016/j.vetimm.2019.02.004","title":"Innate immune response profiles in pigs injected with vaccine adjuvants polydi(sodium carboxylatoethylphenoxy)phosphazene (PCEP) and Emulsigen","year":2019,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Shared Health; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Agriculture - Saskatchewan; University of Saskatchewan","keywords":"Lymph; Immune system; Innate immune system; Biology; Adjuvant; Immunology; Infiltration (HVAC); Cytokine; Medicine; Pathology; Materials science","score_opus":0.006516818288228373,"score_gpt":0.21865337937029214,"score_spread":0.21213656108206377,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911634460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9500148,0.046840865,0.000012856062,0.00081312144,0.0009464405,0.0009933958,0.000023850766,0.0001597521,0.00019490218],"genre_scores_gemma":[0.9952153,0.00238903,0.00012594051,0.00019768243,0.000017257827,0.00015499725,0.00018058436,0.00007583353,0.0016433881],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99495244,0.0019766001,0.0010010152,0.00092623295,0.000066902685,0.001076797],"domain_scores_gemma":[0.9980605,0.00046116076,0.00039772925,0.00090095616,0.00014028596,0.000039333874],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011840832,0.00067412783,0.0011714331,0.0008334118,0.00032291375,0.00003683387,0.00043075517,0.000968255,0.0003268969],"category_scores_gemma":[0.00019008429,0.0005964689,0.00007966718,0.00048409164,0.000609358,0.0005007839,0.0005841868,0.0011137029,0.00034657586],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.04344206,0.00017287764,0.021006055,0.00005905933,0.00027382103,0.0002897535,0.0023472395,0.0000026186672,0.92733324,0.00019242792,0.000018917839,0.0048619113],"study_design_scores_gemma":[0.010804867,0.010249464,0.8510123,0.00019469943,0.00006807638,0.007696575,0.0017357457,0.000015247607,0.11305711,0.00009786239,0.0042499215,0.000818121],"about_ca_topic_score_codex":0.0002816302,"about_ca_topic_score_gemma":0.00001287745,"teacher_disagreement_score":0.83000624,"about_ca_system_score_codex":0.00009235021,"about_ca_system_score_gemma":0.00016828833,"threshold_uncertainty_score":0.9996487},"labels":[],"label_agreement":null},{"id":"W2911807299","doi":"10.1038/s41598-018-36588-6","title":"Synthetic CpG-ODN rapidly enriches immune compartments in neonatal chicks to induce protective immunity against bacterial infections","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Saskatchewan","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency","keywords":"CpG Oligodeoxynucleotide; Immunity; Immune system; Immunology; Innate immune system; Biology; Microbiology; Medicine; Gene; Gene expression","score_opus":0.008809231259891631,"score_gpt":0.23123576432679072,"score_spread":0.22242653306689908,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911807299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9848854,0.00029042695,0.00006544394,0.0001012837,0.011638399,0.0015329714,0.000005788483,0.000082633815,0.0013976367],"genre_scores_gemma":[0.99640167,0.000004017041,0.000019741712,0.000019995658,0.000023420236,0.00022248854,0.00033569976,0.000018163575,0.0029548088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974389,0.00050477544,0.00078687957,0.00066297065,0.000113218644,0.0004932449],"domain_scores_gemma":[0.9983506,0.00009757051,0.0003467387,0.0010111454,0.00015693063,0.000036985282],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0019735547,0.00023783439,0.00038821474,0.0005690097,0.00046155744,0.00013129602,0.00022250362,0.00023496289,0.00076302345],"category_scores_gemma":[0.00039296196,0.00022390328,0.0001279411,0.0006906259,0.00021978984,0.00037002203,0.000226565,0.0004569429,0.0015627365],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022086377,0.00018227352,0.0025371485,0.000015237972,0.00006753363,0.000025627114,0.002203728,0.00007040752,0.98938435,0.000037564787,0.00036394387,0.0048913225],"study_design_scores_gemma":[0.0010025775,0.0002391554,0.05547424,0.00015525825,0.00001821626,0.0002693319,0.0006353228,0.000008508488,0.8786938,0.00043690743,0.06268326,0.00038342024],"about_ca_topic_score_codex":0.00022840209,"about_ca_topic_score_gemma":0.00006371158,"teacher_disagreement_score":0.11069055,"about_ca_system_score_codex":0.00017416531,"about_ca_system_score_gemma":0.00027246354,"threshold_uncertainty_score":0.99921465},"labels":[],"label_agreement":null},{"id":"W2911833917","doi":"10.1002/eji.201847805","title":"Impaired antigen‐specific lymphocyte priming in mice after Toll‐like receptor 4 activation via induction of monocytic myeloid‐derived suppressor cells","year":2019,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"Japan Society for the Promotion of Science; Japan Diabetes Foundation; Suzuken Memorial Foundation","keywords":"Biology; Immunology; Antigen; TLR4; Adoptive cell transfer; Immune system; Priming (agriculture); Antibody; T cell; Immune tolerance; Dendritic cell","score_opus":0.009814276382739571,"score_gpt":0.19787083343825995,"score_spread":0.18805655705552038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2911833917","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99280834,0.0038537525,0.00047079838,0.00011556455,0.0022813336,0.00025278528,0.000002663876,0.000016951195,0.00019781759],"genre_scores_gemma":[0.9979307,0.0012964428,0.00029921142,0.00004131485,0.000056103163,0.0000025290183,0.000024303745,0.0000372858,0.0003120862],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965207,0.00168192,0.0011582251,0.00022636802,0.00006650769,0.0003462657],"domain_scores_gemma":[0.9982351,0.00015166536,0.0010694566,0.00030313566,0.00022338826,0.000017253726],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010169816,0.00022670368,0.0005155106,0.0006054648,0.000059747297,0.000014783397,0.00034739074,0.00018846158,0.0005466129],"category_scores_gemma":[0.000058935686,0.00021058593,0.00020109178,0.0002201219,0.00015540629,0.00046382038,0.00009887123,0.00050735165,0.00062042853],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0054218112,0.00010875003,0.0002111554,0.00002059551,0.00024618197,0.00001649502,0.0021427579,0.000060097056,0.9741972,0.0000071947907,0.00012925224,0.01743848],"study_design_scores_gemma":[0.0036784064,0.00075201824,0.06488644,0.00019843309,0.000018372464,0.00020354868,0.0006946755,0.0000046108717,0.9193969,0.0000065102568,0.009977599,0.00018250708],"about_ca_topic_score_codex":0.000016309838,"about_ca_topic_score_gemma":6.486761e-7,"teacher_disagreement_score":0.064675294,"about_ca_system_score_codex":0.00021554946,"about_ca_system_score_gemma":0.00012208753,"threshold_uncertainty_score":0.8587445},"labels":[],"label_agreement":null},{"id":"W2912778709","doi":"10.1016/j.toxlet.2019.02.005","title":"Kaempferol reduces K63-linked polyubiquitination to inhibit nuclear factor-κB and inflammatory responses in acute lung injury in mice","year":2019,"lang":"en","type":"article","venue":"Toxicology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Natural Science Foundation of China","keywords":"ARDS; Inflammation; Cytokine; Lipopolysaccharide; Ubiquitin; Tumor necrosis factor alpha; Medicine; NF-κB; Pharmacology; Lung; Cancer research; Immunology; Chemistry; Internal medicine; Biochemistry","score_opus":0.0066032303141370565,"score_gpt":0.24398410119643774,"score_spread":0.23738087088230067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2912778709","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99077564,0.00018445526,0.0000033316937,0.0076272553,0.00045385567,0.0007231129,0.000010969877,0.00006709057,0.00015428122],"genre_scores_gemma":[0.9951805,0.00004522963,0.000044651675,0.004107053,0.000020651989,0.000041736126,0.000029270204,0.000026948765,0.00050395966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978259,0.0007133065,0.0005176946,0.00041021372,0.000047852405,0.0004850395],"domain_scores_gemma":[0.9993206,0.00026209667,0.00014618118,0.00021459105,0.000028364964,0.000028164766],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000504746,0.00022999877,0.0003710505,0.0008402802,0.00008267332,0.000024251827,0.00020174577,0.00043911763,0.00028657043],"category_scores_gemma":[0.00013335107,0.00024340519,0.000045653156,0.00023172423,0.00015089654,0.0003240858,0.00014334497,0.00048855995,0.0005967066],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026182053,0.0000436326,0.012257635,0.000018681203,0.000054725173,0.00002518966,0.0025800914,0.000007737525,0.9798067,0.00020348623,0.0008040869,0.0015798089],"study_design_scores_gemma":[0.0020695776,0.0003584255,0.4355343,0.00009909817,0.000018267901,0.00005397793,0.0003281541,0.00001598592,0.5566863,0.000017372773,0.004470585,0.00034800434],"about_ca_topic_score_codex":0.00004609777,"about_ca_topic_score_gemma":0.0000337347,"teacher_disagreement_score":0.42327666,"about_ca_system_score_codex":0.00019917828,"about_ca_system_score_gemma":0.000067898676,"threshold_uncertainty_score":0.99257755},"labels":[],"label_agreement":null},{"id":"W2913147245","doi":"10.1097/shk.0000000000001301","title":"CCR5-Positive Inflammatory Monocytes are Crucial for Control of Sepsis","year":2019,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Sepsis; Chemokine; Immunology; Inflammation; Chemokine receptor; Monocyte; Chemotaxis; CXCR4; Receptor; Medicine; Systemic inflammation; Biology; Internal medicine","score_opus":0.005918951762257912,"score_gpt":0.22115062550559486,"score_spread":0.21523167374333696,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2913147245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9939972,0.0013603813,0.001994425,0.00021829996,0.00053838757,0.0006569292,0.00005613974,0.000032866938,0.0011453424],"genre_scores_gemma":[0.9971707,0.000017764081,0.000046936446,0.00010511778,0.000034673336,0.000024451252,0.00005088309,0.000011653977,0.0025378214],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992929,0.000100681485,0.00025583318,0.00014025914,0.000021455851,0.00018886436],"domain_scores_gemma":[0.9992467,0.00026164623,0.0001833693,0.00018002314,0.00012046671,0.000007799338],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016364608,0.00010478279,0.0002625731,0.00008022847,0.000060060705,0.000005180146,0.00011181792,0.0001844406,0.00030200696],"category_scores_gemma":[0.00008236748,0.00009543874,0.00012750605,0.00004227441,0.000057708847,0.00009349935,0.000023360588,0.000088972665,0.0005345278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002304957,0.00003908633,0.0063993745,0.00006882311,0.0003254971,7.761573e-7,0.00055554847,0.000041139865,0.9802446,0.0025262572,0.0020923663,0.0054015922],"study_design_scores_gemma":[0.003907472,0.00033991656,0.034667276,0.00008456853,0.00006667819,0.000005832748,0.00044856188,0.000118733435,0.935309,0.00032730008,0.02454209,0.00018260018],"about_ca_topic_score_codex":0.000012499334,"about_ca_topic_score_gemma":0.0000035635412,"teacher_disagreement_score":0.04493561,"about_ca_system_score_codex":0.000026280813,"about_ca_system_score_gemma":0.00005555031,"threshold_uncertainty_score":0.6870452},"labels":[],"label_agreement":null},{"id":"W2914317765","doi":"10.1002/bit.26936","title":"Application of a TLR overexpression cell model in pyrogen detection","year":2019,"lang":"en","type":"article","venue":"Biotechnology and Bioengineering","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China; National Science Foundation","keywords":"TLR4; TLR2; Stimulation; Cytokine; CD14; Receptor; Toll-like receptor; Cell; In vitro; Chemistry; Cell culture; Biology; Molecular biology; Immunology; Biochemistry; Innate immune system; Endocrinology","score_opus":0.002897255500519714,"score_gpt":0.17652251633296778,"score_spread":0.17362526083244806,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2914317765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98286545,0.0011719698,0.015529777,0.0000625954,0.000055450957,0.0001756861,0.00000157215,0.000067015666,0.00007045189],"genre_scores_gemma":[0.99957764,0.000117838215,0.00018579506,0.0000048981215,0.000002376912,0.000012474897,0.000008832094,0.0000063007856,0.000083824736],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99953526,0.000013928981,0.0001671904,0.00014278367,0.0000126839295,0.00012816841],"domain_scores_gemma":[0.99975806,0.000017512752,0.00005747977,0.000152259,0.000010528518,0.0000041670246],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009489097,0.00008006829,0.00012832117,0.00022783033,0.000020173658,0.0000016147609,0.00006808263,0.0004356331,0.0000066053503],"category_scores_gemma":[0.000007885659,0.00007510066,0.000020967762,0.00012612723,0.00003973925,0.00005943182,0.000045680892,0.00016287672,0.000031760283],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006601395,0.000017755925,0.0005732141,0.00003982874,0.00000797981,1.2440377e-7,0.000043490378,0.0008285703,0.98997086,0.0005782796,0.0000015523236,0.007872314],"study_design_scores_gemma":[0.00046974135,0.000065934204,0.0015456509,0.000028424443,0.000004616007,0.00000765143,0.000043562213,0.026535481,0.97067523,0.00006353607,0.00048315246,0.000077017845],"about_ca_topic_score_codex":0.00001730121,"about_ca_topic_score_gemma":0.0000020044035,"teacher_disagreement_score":0.025706911,"about_ca_system_score_codex":0.000015947518,"about_ca_system_score_gemma":0.000007800507,"threshold_uncertainty_score":0.33600014},"labels":[],"label_agreement":null},{"id":"W2915478701","doi":"10.1111/jphp.13082","title":"Easy and effective method to generate endotoxin-free chitosan particles for immunotoxicology and immunopharmacology studies","year":2019,"lang":"en","type":"article","venue":"Journal of Pharmacy and Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Fundação para a Ciência e a Tecnologia; GlaxoSmithKline","keywords":"Chitosan; Immunopharmacology; TLR4; Adjuvant; Tumor necrosis factor alpha; Chemistry; Proinflammatory cytokine; Limulus amebocyte lysate; Immunology; Lipopolysaccharide; Medicine; Inflammation; Immune system; Biochemistry","score_opus":0.020128300821737666,"score_gpt":0.36625384665135446,"score_spread":0.3461255458296168,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2915478701","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95661753,0.036481567,0.00041383842,0.0025600325,0.0025209466,0.0013289705,0.000020530912,0.000018811852,0.00003776025],"genre_scores_gemma":[0.99073756,0.004891521,0.0016347871,0.0020934702,0.00023182595,0.00015713875,0.0000046820123,0.000026810036,0.00022218088],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970808,0.0013084929,0.0007330036,0.00033486096,0.000046491066,0.00049634505],"domain_scores_gemma":[0.99701923,0.0020742624,0.00047654926,0.00012349724,0.0002135613,0.0000929281],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015266839,0.00030722268,0.00084883795,0.0003496069,0.00026402491,0.000022844635,0.000240582,0.00016129349,0.0001860243],"category_scores_gemma":[0.00017584674,0.00025598318,0.00010911128,0.00012748246,0.000277655,0.00028451084,0.00029656538,0.00048096414,0.000013789002],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008551969,0.000104359744,0.001154805,0.00015304651,0.0016651923,0.00001870691,0.0015564973,0.00003130344,0.9447052,0.00022388615,0.0018984645,0.039936565],"study_design_scores_gemma":[0.01581518,0.0019482524,0.0019791475,0.000024934567,0.0005575065,0.0010934672,0.00033624936,0.00012722495,0.9060877,0.00040487744,0.07138151,0.00024397534],"about_ca_topic_score_codex":0.00000892434,"about_ca_topic_score_gemma":0.0000010059434,"teacher_disagreement_score":0.06948304,"about_ca_system_score_codex":0.000036584326,"about_ca_system_score_gemma":0.00008744607,"threshold_uncertainty_score":0.9999892},"labels":[],"label_agreement":null},{"id":"W2916786655","doi":"10.1155/2019/3737890","title":"Increased TLR4 Expression Aggravates Sepsis by Promoting IFN-<i>γ</i>Expression in CD38<sup>−/−</sup>Mice","year":2019,"lang":"en","type":"article","venue":"Journal of Immunology Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"National Natural Science Foundation of China","keywords":"TLR4; Proinflammatory cytokine; Sepsis; Immunology; Lipopolysaccharide; Cytokine; Acute kidney injury; Medicine; Innate immune system; CD38; Kidney; Inflammation; Biology; Immune system; Internal medicine; Cell biology","score_opus":0.01694788875929643,"score_gpt":0.30135121989942876,"score_spread":0.28440333114013233,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2916786655","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98484504,0.012606996,0.000020728736,0.0010205442,0.00034192062,0.0004955291,0.0000057156126,0.000026935131,0.0006366028],"genre_scores_gemma":[0.9964704,0.0011728386,0.00013036953,0.000046431887,0.000055262164,0.00002290722,0.000058928414,0.000040049137,0.0020028052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.992242,0.0047677243,0.0013197939,0.00039167135,0.0002773822,0.0010014712],"domain_scores_gemma":[0.99630016,0.0017630908,0.0006672475,0.0005238838,0.0006910278,0.000054580294],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.006871031,0.00028866206,0.00072876876,0.0012472057,0.0003150669,0.000056863748,0.00091664353,0.00081098214,0.0010912592],"category_scores_gemma":[0.0018559346,0.00022993053,0.0002017592,0.00064671057,0.00036609292,0.0006476375,0.00041279328,0.002865501,0.00090936315],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028372926,0.00035743884,0.005833588,0.00005128623,0.00014870775,0.000037441278,0.002093907,0.000027866578,0.97532326,0.000016665892,0.008037214,0.005235306],"study_design_scores_gemma":[0.0039296565,0.001076269,0.0035863188,0.00089230505,0.000014258357,0.00033917895,0.0024364311,0.000066571076,0.9709055,0.00025232768,0.016274106,0.00022709141],"about_ca_topic_score_codex":0.00014287267,"about_ca_topic_score_gemma":0.0000033185147,"teacher_disagreement_score":0.01162538,"about_ca_system_score_codex":0.0002318336,"about_ca_system_score_gemma":0.00035808387,"threshold_uncertainty_score":0.9998686},"labels":[],"label_agreement":null},{"id":"W2919048718","doi":"10.3389/fimmu.2019.00272","title":"Toll-like Interleukin 1 Receptor Regulator Is an Important Modulator of Inflammation Responsive Genes","year":2019,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; National Institutes of Health","keywords":"Chemokine; Interleukin-1 receptor; Signal transduction; CCL5; Biology; Cytokine; Toll-like receptor; Inflammation; Interleukin 8; Immunology; Interleukin 10; Cell biology; Innate immune system; Immune system; Interleukin; T cell; IL-2 receptor","score_opus":0.0059695433564098425,"score_gpt":0.21329628403258952,"score_spread":0.20732674067617968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2919048718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.986489,0.007318162,0.00021927,0.00027634733,0.004882702,0.00057898444,0.00002283712,0.000060743754,0.00015194448],"genre_scores_gemma":[0.99335,0.0006760428,0.0013193946,0.000087249326,0.000040029136,0.000053239586,0.0003053203,0.000042373656,0.0041263048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99724406,0.00066384726,0.0010871212,0.00046210477,0.00006674743,0.00047612248],"domain_scores_gemma":[0.9983453,0.00008640522,0.0005412498,0.0008397449,0.00016796631,0.000019335168],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00065029925,0.00028335914,0.000684642,0.00074162916,0.000071843846,0.000012161011,0.00045111074,0.0006791228,0.0009204999],"category_scores_gemma":[0.000115358,0.00028119909,0.0001405175,0.00030424778,0.00028877635,0.0004403767,0.000124136,0.00037204835,0.0003568154],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035359976,0.000072342336,0.025284508,0.000028190047,0.00030540695,0.0000034908821,0.0020912131,0.000016550202,0.9505711,0.00073309254,0.0030925316,0.014265545],"study_design_scores_gemma":[0.0027587486,0.0008427733,0.03235488,0.00009351393,0.00003217643,0.00005012576,0.0027166123,0.00019487688,0.88010484,0.0005453008,0.07991754,0.0003886013],"about_ca_topic_score_codex":0.00008945678,"about_ca_topic_score_gemma":0.0000137604,"teacher_disagreement_score":0.07682501,"about_ca_system_score_codex":0.00017419441,"about_ca_system_score_gemma":0.00019288619,"threshold_uncertainty_score":0.9999928},"labels":[],"label_agreement":null},{"id":"W2920906179","doi":"10.1002/jcb.27615","title":"Dachengqi decoction alleviates acute lung injury and inhibits inflammatory cytokines production through TLR4/NF‐κB signaling pathway in vivo and in vitro","year":2019,"lang":"en","type":"article","venue":"Journal of Cellular Biochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"TLR4; Proinflammatory cytokine; Tumor necrosis factor alpha; Lipopolysaccharide; NF-κB; Pharmacology; Cytokine; IκBα; Chemistry; Inflammation; Medicine; Immunology","score_opus":0.004019220836889505,"score_gpt":0.20865947505013716,"score_spread":0.20464025421324766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2920906179","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99081737,0.008489152,0.000029543879,0.00016811323,0.00028835333,0.00014644084,0.000002879734,0.000008715066,0.00004940925],"genre_scores_gemma":[0.998889,0.00052283565,0.00008146643,0.000019132096,0.00008321782,0.0000036071024,0.000019817475,0.000013418601,0.0003675052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988061,0.00013047089,0.000599025,0.0002056457,0.000060210004,0.00019851164],"domain_scores_gemma":[0.99930245,0.000052422998,0.00040270408,0.00013369459,0.00009094721,0.000017792365],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064129225,0.00017066076,0.00030682058,0.00016143295,0.000050358103,0.000022984514,0.00008345403,0.0003037147,0.0000390377],"category_scores_gemma":[0.000093656505,0.00015774979,0.000057131827,0.00011906392,0.00007330115,0.0003588363,0.000053975906,0.00043242448,0.0000047861904],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012494532,0.00004161374,0.0023175485,0.00015024777,0.0000824888,0.000017944576,0.0005673416,0.000013771983,0.9949378,0.0000035247338,0.00005886624,0.00055940845],"study_design_scores_gemma":[0.0010980832,0.00006655988,0.0003951433,0.00027261244,0.000027562748,0.00031903613,0.00038118594,0.000013372576,0.9966686,0.000056935918,0.0005407068,0.00016023665],"about_ca_topic_score_codex":0.000006277027,"about_ca_topic_score_gemma":9.574351e-7,"teacher_disagreement_score":0.008071607,"about_ca_system_score_codex":0.000077244884,"about_ca_system_score_gemma":0.000088728906,"threshold_uncertainty_score":0.643285},"labels":[],"label_agreement":null},{"id":"W2921546445","doi":"10.1164/rccm.201808-1599oc","title":"IL4Rα Signaling Abrogates Hypoxic Neutrophil Survival and Limits Acute Lung Injury Responses <i>In Vivo</i>","year":2019,"lang":"en","type":"article","venue":"American Journal of Respiratory and Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":54,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Public Health Agency; Queen's University Belfast; Queen's University; Wellcome Trust","keywords":"Proinflammatory cytokine; Immunology; Hypoxia (environmental); Medicine; In vivo; Inflammation; Ex vivo; Neutrophil extracellular traps; Lung; Cytokine; Cancer research; Biology; Internal medicine; Chemistry","score_opus":0.010032455415429947,"score_gpt":0.28353355482572473,"score_spread":0.27350109941029477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2921546445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9752115,0.02250203,0.000020291463,0.0014597382,0.00046633233,0.000096814925,0.00000742457,0.000010713917,0.00022516576],"genre_scores_gemma":[0.99843,0.00046872208,0.00003323765,0.0008714742,0.00011445928,0.0000024064595,0.0000019039402,0.000014902972,0.000062882646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802834,0.00077200035,0.00058796775,0.00020337946,0.0001064574,0.00030183932],"domain_scores_gemma":[0.9982259,0.0011042181,0.0001981963,0.00014666721,0.0002463217,0.00007864672],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00085333415,0.00018968944,0.00063114305,0.0003150017,0.00009872068,0.000014921622,0.00012769192,0.0001072663,0.00014734511],"category_scores_gemma":[0.00057119137,0.00014386467,0.0000621484,0.00020705475,0.001003625,0.00020429549,0.000039481176,0.00048911397,0.00000747423],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037585555,0.000026302907,0.018956998,0.000074542106,0.00009344484,0.0001222874,0.0013073516,0.0000014376466,0.9575059,0.00062645925,0.00016673839,0.017359987],"study_design_scores_gemma":[0.015181176,0.05305516,0.08577088,0.0032516215,0.0013033155,0.0023354716,0.085697696,0.000013840489,0.6735199,0.00041055508,0.07796808,0.001492295],"about_ca_topic_score_codex":0.000014586358,"about_ca_topic_score_gemma":0.00000202593,"teacher_disagreement_score":0.283986,"about_ca_system_score_codex":0.000035143028,"about_ca_system_score_gemma":0.00010312199,"threshold_uncertainty_score":0.58666307},"labels":[],"label_agreement":null},{"id":"W2922370077","doi":"10.3389/fimmu.2019.00482","title":"TLR10 Senses HIV-1 Proteins and Significantly Enhances HIV-1 Infection","year":2019,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":88,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"TLR2; Biology; Immunology; Innate immune system; Context (archaeology); Human immunodeficiency virus (HIV); TLR9; Receptor; Virology; TLR7; Toll-like receptor; Immune system; Genetics; Gene expression; Gene; DNA methylation","score_opus":0.004517177677449389,"score_gpt":0.20008929799324773,"score_spread":0.19557212031579835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2922370077","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98611206,0.0064911935,0.0020560224,0.00034820396,0.0027556785,0.0006109623,0.000007748047,0.00009095619,0.0015271505],"genre_scores_gemma":[0.99000674,0.001254129,0.000576665,0.000065472756,0.000027136828,0.00007153192,0.00011833791,0.00002124053,0.007858724],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983352,0.00042946605,0.0003935635,0.00037283974,0.00003070424,0.00043825273],"domain_scores_gemma":[0.9993741,0.000088334426,0.0001643357,0.00031478135,0.00004750373,0.000010942248],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003051363,0.00021750745,0.00041920017,0.00042248744,0.000117633965,0.000019220835,0.00014191141,0.0004513862,0.00030821087],"category_scores_gemma":[0.00009903918,0.00020944004,0.00006163047,0.00020278082,0.00030505742,0.00026013554,0.000084549254,0.00043654654,0.001186421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008849434,0.0000782058,0.060694646,0.000035433826,0.00018526854,0.000006038312,0.0009465076,0.000009835798,0.91942793,0.00056813256,0.0041053374,0.013057713],"study_design_scores_gemma":[0.0036626004,0.0006828704,0.1601723,0.00012982008,0.000041363324,0.00016795847,0.0015983245,0.000053144424,0.681878,0.0007818342,0.15027346,0.000558343],"about_ca_topic_score_codex":0.00010987114,"about_ca_topic_score_gemma":0.000016474576,"teacher_disagreement_score":0.23754996,"about_ca_system_score_codex":0.00008161843,"about_ca_system_score_gemma":0.00006817829,"threshold_uncertainty_score":0.9995913},"labels":[],"label_agreement":null},{"id":"W2924418428","doi":"10.1101/575415","title":"Irgm1-deficiency leads to myeloid dysfunction in colon lamina propria and susceptibility to the intestinal pathogen <i>Citrobacter rodentium</i>","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"CH.I.L.D. Foundation","keywords":"Citrobacter rodentium; Lamina propria; Biology; Inflammation; Pathogen; Microbiology; Immunity; Immune system; Immunology; Intracellular parasite; Intestinal mucosa; Medicine; Epithelium","score_opus":0.008714876288618202,"score_gpt":0.2060868681543722,"score_spread":0.197371991865754,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2924418428","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929223,0.0008959999,0.00089796743,0.0009117457,0.0019642594,0.002183115,0.00006919976,0.00013872013,0.000016687352],"genre_scores_gemma":[0.9986663,0.000070141105,0.00031053124,0.00035178845,0.000110164096,0.00031626012,0.0000032014718,0.00005700807,0.000114625465],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968264,0.0006525773,0.000690826,0.0010619219,0.00012224985,0.00064598996],"domain_scores_gemma":[0.9978839,0.00013397969,0.0002899344,0.0012428758,0.00038383715,0.000065438486],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018696383,0.0004974693,0.00055333256,0.00037672638,0.00021256262,0.00014448744,0.00056269206,0.00065370224,0.00008258091],"category_scores_gemma":[0.00066804345,0.00042114433,0.000101826525,0.00052993937,0.000137093,0.00016058423,0.0008238076,0.0010256057,0.0009211996],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00049207493,0.000109122295,0.03482347,0.00016718137,0.000031419477,0.00000728917,0.00010812191,0.0001000478,0.9635993,0.00010683255,0.0004223382,0.000032804448],"study_design_scores_gemma":[0.0006595991,0.0003312171,0.61001444,0.00033883864,0.00006667805,2.5392987e-7,0.000017560642,0.000021723197,0.3782246,0.0000015799512,0.009776934,0.0005465543],"about_ca_topic_score_codex":0.00016769674,"about_ca_topic_score_gemma":0.00007731397,"teacher_disagreement_score":0.5853747,"about_ca_system_score_codex":0.00036186632,"about_ca_system_score_gemma":0.00042668806,"threshold_uncertainty_score":0.9998567},"labels":[],"label_agreement":null},{"id":"W2924639245","doi":"10.1002/mgg3.650","title":"Influence of <i>IL‐1R2</i> polymorphisms on endometrial cancer susceptibility in the Chinese Han population","year":2019,"lang":"en","type":"article","venue":"Molecular Genetics & Genomic Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Western University; Northwest University; Ministry of Education","keywords":"Endometrial cancer; Single-nucleotide polymorphism; Haplotype; Odds ratio; Oncology; Medicine; Internal medicine; Case-control study; Cancer; Bioinformatics; Genetics; Genotype; Biology; Gene","score_opus":0.006357752308988764,"score_gpt":0.25416971688441464,"score_spread":0.24781196457542587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2924639245","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933856,0.004700309,0.00003910306,0.00068730436,0.00038918914,0.00061266916,0.000007446512,0.000008676035,0.00016967619],"genre_scores_gemma":[0.9988953,0.0002972196,0.000012681065,0.0005199549,0.000048234506,0.000019285122,0.00010242043,0.000013356972,0.00009156375],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984743,0.00043417688,0.00051073055,0.00025034152,0.00010487325,0.0002255971],"domain_scores_gemma":[0.99899626,0.00019050465,0.00020893155,0.0005479427,0.000043365966,0.0000129749105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077327254,0.00016853564,0.00033123617,0.000229067,0.00003435975,0.0000036702145,0.0002997231,0.00014941457,0.00016482547],"category_scores_gemma":[0.00021261508,0.00011188656,0.00006314807,0.00034926494,0.00012663979,0.000023810222,0.00004336913,0.00021075888,0.00008432732],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004501514,0.000040011862,0.036963217,0.000013100501,0.00003603291,0.000002630356,0.00080791285,0.0029794094,0.9563067,0.00014236323,0.000023679931,0.0022348175],"study_design_scores_gemma":[0.0033373712,0.00070112257,0.7578786,0.00007407869,0.000042352018,0.000010745129,0.00007661549,0.000037044738,0.23603527,0.00026769954,0.0013943869,0.00014470119],"about_ca_topic_score_codex":0.0011353777,"about_ca_topic_score_gemma":0.000069907095,"teacher_disagreement_score":0.7209154,"about_ca_system_score_codex":0.000062033774,"about_ca_system_score_gemma":0.000053394768,"threshold_uncertainty_score":0.45626014},"labels":[],"label_agreement":null},{"id":"W2933220795","doi":"10.3233/ch-189409","title":"Effect of lipopolysaccharide on the adherence of human umbilical vein endothelial cells (HUVEC) on a natural substrate","year":2018,"lang":"en","type":"article","venue":"Clinical Hemorheology and Microcirculation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Umbilical vein; Lipopolysaccharide; Endothelial stem cell; In vitro; In vivo; Chemistry; Immunology; Microbiology; Medicine; Biology; Biochemistry; Biotechnology","score_opus":0.02169400921861059,"score_gpt":0.32671228915853956,"score_spread":0.30501827993992897,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2933220795","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981553,0.00017486786,0.000026263015,0.00014865889,0.0007795462,0.00032482902,0.000007591234,0.00001901284,0.00036393746],"genre_scores_gemma":[0.99928594,0.000028426935,0.0000069072885,0.00016183133,0.000093146955,0.000010247878,0.000030175182,0.000008849919,0.00037444918],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99758255,0.0011876083,0.00069392286,0.00028899216,0.000040195227,0.00020674922],"domain_scores_gemma":[0.9967452,0.0024734465,0.00037124797,0.00029662973,0.00009761342,0.00001583154],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013971445,0.00016384966,0.00042425477,0.00007123458,0.00018687073,0.000004400165,0.00017075006,0.00041664043,0.00021802205],"category_scores_gemma":[0.0004512505,0.00010871622,0.00016054817,0.00006720496,0.0014429241,0.00004548536,0.00004619382,0.00047260852,0.00016740753],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026274826,0.000103261336,0.0035044025,0.000027241193,0.00008487427,8.9248147e-7,0.00015707605,7.0032434e-7,0.9772874,0.0067530186,0.00016311697,0.009290506],"study_design_scores_gemma":[0.0016246374,0.0048532975,0.023626309,0.000063659325,0.000057955473,0.000014142216,0.000021607413,0.000029078887,0.96906406,0.00038552957,0.00016273635,0.00009699544],"about_ca_topic_score_codex":0.00003732623,"about_ca_topic_score_gemma":0.00001189436,"teacher_disagreement_score":0.020121908,"about_ca_system_score_codex":0.000011602485,"about_ca_system_score_gemma":0.000038323433,"threshold_uncertainty_score":0.53165144},"labels":[],"label_agreement":null},{"id":"W2934943437","doi":"10.1096/fasebj.27.1_supplement.356.4","title":"Retinoid derivatives offer anti‐inflammatory benefits by promoting neutrophil apoptosis and inhibiting proinflammatory mediator production in a model of bovine respiratory disease","year":2013,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health PEI; University of Alberta; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Alberta Innovates - Health Solutions","keywords":"Proinflammatory cytokine; Retinoid; Apoptosis; Inflammation; Retinoic acid; Immunology; Context (archaeology); Mediator; Medicine; Chemistry; Biology; Cell culture; Internal medicine; Biochemistry","score_opus":0.011750751440949916,"score_gpt":0.20520993237892515,"score_spread":0.19345918093797523,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2934943437","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99392086,0.0039877603,0.000019259061,0.001251205,0.00015363368,0.0006037263,0.000007129652,0.000029329425,0.000027073214],"genre_scores_gemma":[0.9993519,0.00025869464,0.00003635119,0.00006393856,0.00009142714,0.000054774628,0.0000121124485,0.000026932274,0.000103867314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99772066,0.0007460733,0.0008119207,0.00024298506,0.00010950706,0.00036887638],"domain_scores_gemma":[0.99875647,0.00012152185,0.00062561774,0.00023229269,0.00020307164,0.000061012015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016706466,0.0002200501,0.00029875143,0.00022234517,0.00037712706,0.000040823623,0.0001894329,0.00013827119,0.00004615747],"category_scores_gemma":[0.0006677986,0.00016012178,0.00007504019,0.00014427894,0.00030051812,0.00060976617,0.000103013204,0.00061227585,0.0000200045],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027063713,0.000056736582,0.008953842,0.00008448311,0.00004662203,0.0000012984192,0.001703162,0.0002123419,0.98456335,0.00006162043,0.0003798687,0.0036660528],"study_design_scores_gemma":[0.0008392147,0.00009583656,0.021242343,0.00031971573,0.000034871762,0.00003437009,0.0005475071,0.0005895813,0.9759128,0.00017201451,0.000029266077,0.00018249659],"about_ca_topic_score_codex":0.000007786167,"about_ca_topic_score_gemma":0.000001269729,"teacher_disagreement_score":0.0122885015,"about_ca_system_score_codex":0.00005639875,"about_ca_system_score_gemma":0.00019088713,"threshold_uncertainty_score":0.6529577},"labels":[],"label_agreement":null},{"id":"W2938434291","doi":"10.1111/all.13829","title":"Myeloid‐derived suppressor cells: Roles and relations with Th2, Th17, and Treg cells in asthma","year":2019,"lang":"en","type":"letter","venue":"Allergy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Research Institute in Oncology and Hematology; CancerCare Manitoba","funders":"Hospital for Sick Children; Research Manitoba","keywords":"Treg cell; Asthma; Suppressor; Immunology; Myeloid-derived Suppressor Cell; Myeloid; Content (measure theory); Medicine; Biology; Gene; Genetics; T cell; Mathematics; IL-2 receptor","score_opus":0.0049815767578225275,"score_gpt":0.17979524649300815,"score_spread":0.17481366973518564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2938434291","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.78224474,0.016737446,0.000060224134,0.19216795,0.0010949983,0.0011815568,0.00013397231,0.00012786692,0.0062512443],"genre_scores_gemma":[0.5084537,0.016064227,0.0006687194,0.19690605,0.0012499809,0.0004241508,0.008104414,0.0005002183,0.26762852],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984991,0.00034247775,0.00031617627,0.00042614908,0.000045814737,0.00037029476],"domain_scores_gemma":[0.9990645,0.00035640143,0.00018879495,0.0003390223,0.00004122601,0.000010079933],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00012738178,0.00031799808,0.00043769722,0.000249636,0.0001141199,0.00003644264,0.00014974219,0.0010701793,0.00031676973],"category_scores_gemma":[0.000014492512,0.00026325372,0.00004909717,0.000076445926,0.00019615411,0.00015348848,0.00009371037,0.00096793985,0.00025911647],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041651668,0.000034918616,0.000057940106,0.00007686881,0.00044912184,0.000069958835,0.0014784308,0.00002793393,0.4571533,0.0000660463,0.5385433,0.0016257092],"study_design_scores_gemma":[0.0015079412,0.00019461488,0.0021216038,0.0001439742,0.00002879623,0.00005305249,0.00012704934,0.000010131168,0.0736185,0.000032560325,0.9218162,0.0003456093],"about_ca_topic_score_codex":0.00017587544,"about_ca_topic_score_gemma":0.00021592749,"teacher_disagreement_score":0.3835348,"about_ca_system_score_codex":0.000027037,"about_ca_system_score_gemma":0.00007581423,"threshold_uncertainty_score":0.99998194},"labels":[],"label_agreement":null},{"id":"W2939799290","doi":"10.1016/j.vetimm.2019.04.005","title":"Natural and inducible regulatory B cells are widely distributed in ovine lymphoid tissues","year":2019,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Biology; Regulatory B cells; Lymphatic system; ELISPOT; Spleen; B cell; Immunology; Molecular biology; CpG Oligodeoxynucleotide; Immune system; Antibody; T cell","score_opus":0.00826664122248412,"score_gpt":0.22162764652389888,"score_spread":0.21336100530141477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2939799290","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9462673,0.051021386,0.000007465215,0.00038396945,0.0016810275,0.00038486332,0.00002723014,0.00009229756,0.00013443605],"genre_scores_gemma":[0.9955,0.0024092086,0.000051789477,0.00018922877,0.000015824673,0.000038300503,0.00025320725,0.000030690502,0.0015116946],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972656,0.0007909882,0.0006073716,0.00064331817,0.000036044137,0.0006567188],"domain_scores_gemma":[0.99882764,0.00022698252,0.0002705592,0.0005909529,0.000063712985,0.00002016011],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005363083,0.00038871955,0.00071885966,0.0004199755,0.00020465738,0.000023851228,0.00026993878,0.00071586366,0.00022486795],"category_scores_gemma":[0.00007735981,0.00037746056,0.00006452422,0.0002191465,0.00072249747,0.00037796574,0.00042991762,0.00067996565,0.00040453748],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019808358,0.00009328857,0.013914072,0.000040127616,0.00010491206,0.00014165764,0.0005383606,0.000001857991,0.9775066,0.00037931206,0.0001209072,0.0051780865],"study_design_scores_gemma":[0.005166332,0.0023964813,0.72597516,0.00014188646,0.000039088256,0.008075274,0.0011040396,0.0000139787435,0.23235516,0.0002342387,0.02386599,0.0006323526],"about_ca_topic_score_codex":0.000097807824,"about_ca_topic_score_gemma":0.000007484397,"teacher_disagreement_score":0.7451514,"about_ca_system_score_codex":0.000074170195,"about_ca_system_score_gemma":0.000059543643,"threshold_uncertainty_score":0.99986774},"labels":[],"label_agreement":null},{"id":"W2941651253","doi":"10.1128/mbio.00595-19","title":"Chlamydia trachomatis Lipopolysaccharide Evades the Canonical and Noncanonical Inflammatory Pathways To Subvert Innate Immunity","year":2019,"lang":"en","type":"article","venue":"mBio","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Innate immune system; Chlamydia trachomatis; TLR4; Immunology; Biology; Lipopolysaccharide; Immunity; Inflammation; Microbiology; Immune system","score_opus":0.0086598716581979,"score_gpt":0.21575987841085742,"score_spread":0.20710000675265952,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2941651253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948033,0.0012974261,0.000014874547,0.0010622487,0.00054233434,0.00048515605,0.000011687064,0.0000756356,0.0017072993],"genre_scores_gemma":[0.9979253,0.00011710154,0.000022678581,0.00047985127,0.00003927787,0.000043068296,0.00002971796,0.000019523923,0.001323472],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99847406,0.00041490656,0.0003870263,0.00026262598,0.000062838706,0.00039852012],"domain_scores_gemma":[0.9989256,0.00033943498,0.0000986483,0.0005424461,0.0000541547,0.000039677965],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000709063,0.0002011009,0.00028317294,0.00009312777,0.0002715043,0.000050989784,0.00035148818,0.0003009413,0.0005822056],"category_scores_gemma":[0.0001720001,0.00014513593,0.00008544241,0.000109102715,0.00018423045,0.00016733298,0.00021532449,0.0005286967,0.0020952355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034518665,0.000042849915,0.009034467,0.000021030124,0.00010311062,0.000004540823,0.0017271122,0.000003407971,0.96651804,0.0031280362,0.0009765573,0.01809565],"study_design_scores_gemma":[0.0014661285,0.00023648988,0.41442376,0.00007380571,0.000047710404,0.00013201551,0.0006288428,0.00002423222,0.5274831,0.00021310934,0.054875456,0.00039535406],"about_ca_topic_score_codex":0.0003535015,"about_ca_topic_score_gemma":0.00012731166,"teacher_disagreement_score":0.43903497,"about_ca_system_score_codex":0.00006200056,"about_ca_system_score_gemma":0.00019501791,"threshold_uncertainty_score":0.9986817},"labels":[],"label_agreement":null},{"id":"W2942131522","doi":"","title":"Transcriptomic Impact of IMA-08401, a Novel AHR Agonist Resembling Laquinimod, on Rat Liver","year":2019,"lang":"en","type":"article","venue":"eScholarship (California Digital Library)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ontario Institute for Cancer Research","funders":"","keywords":"Agonist; Aryl hydrocarbon receptor; Pharmacology; In vivo; Metabolite; Transcriptome; Immune system; Receptor; Toxicity; Ex vivo; Medicine; In vitro; Chemistry; Transcription factor; Internal medicine; Biology; Immunology; Gene expression; Biochemistry; Gene","score_opus":0.014845718306958737,"score_gpt":0.22946738962300997,"score_spread":0.21462167131605123,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2942131522","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865172,0.00092779397,0.000054923046,0.00014495171,0.00034690878,0.0004543584,0.0010988977,0.0001660786,0.0102889035],"genre_scores_gemma":[0.9932794,0.000051863335,0.000049723716,0.00014548413,0.000041623785,0.000012692494,0.0013527584,0.00007191111,0.00499452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809074,0.00017107846,0.00063029845,0.00043693086,0.00011255571,0.00055838935],"domain_scores_gemma":[0.99878776,0.00029269533,0.00023953298,0.00055956317,0.00005664812,0.000063773434],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025785438,0.00037195763,0.00049640436,0.00035987873,0.00012798216,0.00027530172,0.0004958979,0.0003847561,0.0020098533],"category_scores_gemma":[0.0001538314,0.00030603306,0.00052204024,0.00035411256,0.00014992995,0.0023842552,0.00011693016,0.00065101957,0.011777009],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0051199836,0.00044933293,0.02230734,0.000093455106,0.00032248153,0.000010954944,0.00011767127,0.000043397373,0.9629344,0.0013522917,0.0026599101,0.0045888047],"study_design_scores_gemma":[0.005309448,0.0016686134,0.022992989,0.00041358604,0.00005959717,0.00007673511,0.000079453406,0.00007338235,0.8297411,0.0004835128,0.13829471,0.0008068486],"about_ca_topic_score_codex":0.000019890631,"about_ca_topic_score_gemma":7.905293e-7,"teacher_disagreement_score":0.1356348,"about_ca_system_score_codex":0.00006736194,"about_ca_system_score_gemma":0.00022034979,"threshold_uncertainty_score":0.9999392},"labels":[],"label_agreement":null},{"id":"W2945236555","doi":"10.1139/facets-2018-0045","title":"Pyrogenic and neuroinflammatory properties of zymosan and its potential as an alternative to live yeast in antipyretic drug testing","year":2019,"lang":"en","type":"article","venue":"FACETS","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"National Research Foundation; Alexander von Humboldt-Stiftung","keywords":"Zymosan; Antipyretic; Pharmacology; Medicine; Tumor necrosis factor alpha; Immunology; Prostaglandin E2; Endocrinology; Internal medicine; Chemistry; Analgesic; Biochemistry; In vitro","score_opus":0.012857899622725433,"score_gpt":0.2194522128733185,"score_spread":0.20659431325059308,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945236555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976705,0.0016013165,8.3124286e-7,0.000078363795,0.00014149262,0.00037350613,0.0000039642646,0.000015455693,0.00011458959],"genre_scores_gemma":[0.99945056,0.000036248173,0.00001188047,0.000031953303,0.000008675937,0.0000070928936,0.000005514094,0.00001043175,0.00043766244],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99922496,0.00017065972,0.0002031037,0.00019957754,0.000030264015,0.00017142776],"domain_scores_gemma":[0.9997098,0.000026604761,0.00007831088,0.00011190163,0.000055000895,0.000018370303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016582516,0.00010635705,0.00017927606,0.00011661658,0.00004437599,0.000011868523,0.00008226806,0.00006647647,0.000040366158],"category_scores_gemma":[0.000106743275,0.000094961986,0.000015434507,0.00006458032,0.00005678118,0.00017739041,0.00009313767,0.000119402954,0.00021785843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024974436,0.00002130367,0.0041020974,0.000037207454,0.000020006197,0.000004966971,0.004398634,0.000032210723,0.99009746,0.00006685173,0.0000063112675,0.00096321956],"study_design_scores_gemma":[0.00086882623,0.00029069072,0.06732425,0.00014459419,0.000010986054,0.00008766912,0.0010320696,0.00030614808,0.9296527,0.000025644202,0.00012431896,0.00013210277],"about_ca_topic_score_codex":0.000124594,"about_ca_topic_score_gemma":0.000014005563,"teacher_disagreement_score":0.06322215,"about_ca_system_score_codex":0.0000093708595,"about_ca_system_score_gemma":0.00003941709,"threshold_uncertainty_score":0.38724375},"labels":[],"label_agreement":null},{"id":"W2945815300","doi":"10.3762/bjoc.15.174","title":"Design, synthesis and biological evaluation of immunostimulating mannosylated desmuramyl peptides","year":2019,"lang":"en","type":"article","venue":"Beilstein Journal of Organic Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"European Regional Development Fund; Medicinski Fakultet, Sveučilište u Zagrebu; Hrvatska Zaklada za Znanost; Terry Fox Foundation; Sveučilište u Zagrebu","keywords":"Muramyl dipeptide; Chemistry; Mannose; Adamantane; Peptidoglycan; Lipophilicity; Ovalbumin; Adjuvant; Peptide; Dipeptide; Mannose receptor; Biochemistry; Peptide synthesis; Lipopeptide; Linker; Immune system; Combinatorial chemistry; In vitro; Cell wall; Immunology; Organic chemistry; Biology","score_opus":0.02380655393910974,"score_gpt":0.24503750316709902,"score_spread":0.22123094922798928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2945815300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99478483,0.004569073,0.00016897063,0.00005032511,0.00010629711,0.00013018088,0.000001025521,0.000008989541,0.0001803057],"genre_scores_gemma":[0.9994674,0.00014585583,0.00019984391,0.000005202898,0.000018543786,0.0000015746039,0.000006648643,0.000010412358,0.00014451546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987112,0.00031889373,0.0006077967,0.00011775639,0.00009246671,0.0001518393],"domain_scores_gemma":[0.9982389,0.00055920536,0.0006189144,0.00015928192,0.00040809903,0.000015585878],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0017680231,0.00012937243,0.00033343156,0.000052250987,0.00005347035,0.00001114711,0.00015814458,0.00024392754,0.0023020403],"category_scores_gemma":[0.0010938157,0.00010338868,0.000075442586,0.00010305929,0.00008569765,0.00011539749,0.000047696238,0.00022789578,0.000034412747],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034583078,0.000038405935,0.0025721083,0.000036840665,0.00018905518,0.0000019421207,0.00016949643,0.00007212076,0.99004346,0.0000018668342,0.000019911024,0.0065089725],"study_design_scores_gemma":[0.0012804236,0.00014342897,0.007245721,0.00020792102,0.00013318466,0.00044353737,0.00036968835,0.00010110171,0.9898434,0.00006338782,0.00006095671,0.000107225445],"about_ca_topic_score_codex":0.0000015243884,"about_ca_topic_score_gemma":4.4156515e-8,"teacher_disagreement_score":0.0064017475,"about_ca_system_score_codex":0.000057011806,"about_ca_system_score_gemma":0.000164542,"threshold_uncertainty_score":0.99861},"labels":[],"label_agreement":null},{"id":"W2949489080","doi":"10.82308/8623","title":"The role of ZC3H12A in «Pseudomonas aeruginosa» infection of airway epithelial cells and implication in Cystic Fibrosis","year":2011,"lang":"en","type":"article","venue":"eScholarship@McGill (McGill)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pseudomonas aeruginosa; Cystic fibrosis; Molecular biology; MAPK/ERK pathway; p38 mitogen-activated protein kinases; Biology; Chemistry; Signal transduction; Cell biology; Bacteria; Genetics","score_opus":0.008029504643964297,"score_gpt":0.20063925226620755,"score_spread":0.19260974762224325,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949489080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99560666,0.000784161,5.8576927e-7,0.0000076198558,0.00017973232,0.00035699114,0.00007489468,0.000021468744,0.0029679013],"genre_scores_gemma":[0.9990442,0.00067822833,0.000063902946,0.000007631377,0.0000035512328,0.000066085864,0.000020530932,0.000017655557,0.00009821418],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981154,0.0005902496,0.0006818943,0.00026105138,0.000057997637,0.00029341568],"domain_scores_gemma":[0.99885786,0.00035449598,0.0003334399,0.0003325531,0.00010212912,0.000019504789],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010043444,0.00018044429,0.00029600214,0.00026777526,0.00021524487,0.00000589318,0.00018184984,0.00030050206,0.0000576237],"category_scores_gemma":[0.00026698355,0.00015407719,0.00008018027,0.000312273,0.00017470958,0.00031117286,0.00009989206,0.00037061758,0.000060457714],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00059059524,0.00010458192,0.0027727634,0.000028242137,0.000029716484,6.659364e-7,0.000053674434,0.000006243729,0.9032554,0.01759298,3.2762446e-7,0.07556478],"study_design_scores_gemma":[0.00085864076,0.00021658251,0.06576722,0.00006662002,0.00002249651,0.0000128578295,0.00008619765,0.000005026161,0.91974425,0.0067929327,0.0062870784,0.00014009465],"about_ca_topic_score_codex":0.0022405914,"about_ca_topic_score_gemma":0.0005459921,"teacher_disagreement_score":0.075424686,"about_ca_system_score_codex":0.00009389649,"about_ca_system_score_gemma":0.000021704805,"threshold_uncertainty_score":0.62830853},"labels":[],"label_agreement":null},{"id":"W2949782512","doi":"10.1016/j.dib.2019.104117","title":"Data on changes of NF-κB gene expression in liver and lungs as a biomarker and hepatic injury in CLP-induced septic rats","year":2019,"lang":"en","type":"article","venue":"Data in Brief","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University; Institut National de la Recherche Scientifique","funders":"","keywords":"Biomarker; Gene expression; Medicine; Sepsis; Pathology; Infiltration (HVAC); Real-time polymerase chain reaction; Reverse transcription polymerase chain reaction; Immunology; Gene; Biology","score_opus":0.03473093442941532,"score_gpt":0.2881422464828271,"score_spread":0.2534113120534118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2949782512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977207,0.0013189684,0.0000014520027,0.00014642059,0.00011490125,0.00033652628,0.0002778342,0.000006168761,0.0000769963],"genre_scores_gemma":[0.9963971,0.0009804603,0.00004456227,0.000108807275,0.000005428569,0.000008269718,0.0023385682,0.000008928137,0.00010792607],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888414,0.00027746428,0.00025853512,0.00037370232,0.000032993583,0.00017317361],"domain_scores_gemma":[0.9988063,0.0001622298,0.000093082934,0.000918352,0.0000105215195,0.000009544362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00064583245,0.000113446,0.00023921412,0.0002603219,0.000018332714,0.000009841786,0.00032762202,0.0001811246,0.00012363026],"category_scores_gemma":[0.00019649681,0.0000944095,0.000005624593,0.00012948815,0.000058155172,0.00033588771,0.0006914813,0.00016573821,0.000049337737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076645473,0.00007152388,0.01109234,0.00006675312,0.000014220481,0.000009530287,0.0004353843,7.0485754e-8,0.9725382,0.000013677205,0.00056295475,0.014428923],"study_design_scores_gemma":[0.002264187,0.00027856938,0.2891626,0.0006198992,0.000014181231,0.00002163653,0.00015897346,0.00046649197,0.6996771,0.00002936924,0.007091159,0.00021581899],"about_ca_topic_score_codex":0.0007343191,"about_ca_topic_score_gemma":0.00042948895,"teacher_disagreement_score":0.27807027,"about_ca_system_score_codex":0.000016600836,"about_ca_system_score_gemma":0.00003427701,"threshold_uncertainty_score":0.38499078},"labels":[],"label_agreement":null},{"id":"W2950748303","doi":"10.7150/jca.31011","title":"Toll-like receptor 6 expression, sequence variants, and their association with colorectal cancer risk","year":2019,"lang":"en","type":"article","venue":"Journal of Cancer","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Deanship of Scientific Research, King Saud University; King Saud University","keywords":"Colorectal cancer; Odds ratio; Single-nucleotide polymorphism; Oncology; Confidence interval; Internal medicine; Population; Logistic regression; SNP; Case-control study; Medicine; Cancer; Genotype; TaqMan; Biology; Real-time polymerase chain reaction; Gene; Genetics","score_opus":0.005145429722037006,"score_gpt":0.2308758536503555,"score_spread":0.22573042392831852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2950748303","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902151,0.007803429,0.000045523626,0.0004328514,0.0012112751,0.00011194784,0.000026135831,0.0000074017917,0.00014629835],"genre_scores_gemma":[0.99261945,0.0049801487,0.00005025628,0.000095534764,0.000092552335,0.0000100757425,0.0000041409335,0.000009872916,0.0021379702],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992163,0.00020213617,0.00026097355,0.000098215496,0.000055924203,0.00016641444],"domain_scores_gemma":[0.99881303,0.0001398351,0.0007236314,0.0000700356,0.00023614081,0.000017312375],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004232703,0.000103295744,0.00023811101,0.00006626143,0.00008714798,0.000018128429,0.00008986381,0.00015547493,0.0010646548],"category_scores_gemma":[0.00005448848,0.00006350332,0.00004561356,0.000072579925,0.000032725537,0.0002800729,0.000018724913,0.00031805295,0.00003297277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001250966,0.000015277832,0.110942885,0.000008665471,0.00025492522,9.717778e-7,0.0007793616,0.000048154834,0.8774763,0.000009692134,0.0039494387,0.0052634184],"study_design_scores_gemma":[0.0021586872,0.0004038454,0.09186678,0.00029344886,0.00007179808,0.000059524595,0.0003537457,0.000012291784,0.8156986,0.000033415836,0.08889505,0.00015278427],"about_ca_topic_score_codex":0.00011868073,"about_ca_topic_score_gemma":0.00005076379,"teacher_disagreement_score":0.08494561,"about_ca_system_score_codex":0.0001624443,"about_ca_system_score_gemma":0.00024405714,"threshold_uncertainty_score":0.9998485},"labels":[],"label_agreement":null},{"id":"W2951742985","doi":"10.1016/j.virol.2019.06.003","title":"Innate antiviral responses are induced by TLR3 and TLR4 ligands in chicken tracheal epithelial cells: Communication between epithelial cells and macrophages","year":2019,"lang":"en","type":"article","venue":"Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Agriculture and Agri-Food Canada; University of Guelph; Canadian Poultry Research Council; Natural Sciences and Engineering Research Council of Canada; Ontario Ministry of Agriculture, Food and Rural Affairs","keywords":"Biology; Innate immune system; TLR3; TLR4; Respiratory tract; TLR7; Stimulation; Cell biology; Interferon; Immunology; RIG-I; Viral replication; Epithelium; Respiratory system; Virus; Virology; Signal transduction; Immune system; Toll-like receptor; Anatomy","score_opus":0.009536204937634428,"score_gpt":0.23517878941538511,"score_spread":0.22564258447775068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2951742985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9962161,0.0019902636,0.0000108763625,0.0007804472,0.000265538,0.0004036687,0.00015665941,0.000043415403,0.00013298338],"genre_scores_gemma":[0.9980266,0.0008569676,0.000020620791,0.00018973893,0.00003258633,0.000018933104,0.00018676998,0.000025471703,0.00064232206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976302,0.0010387899,0.00047509247,0.00039042727,0.000040524435,0.00042497166],"domain_scores_gemma":[0.9987339,0.0005799693,0.0002498683,0.00038010077,0.000030530628,0.000025673313],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008019587,0.00025438625,0.0005354142,0.00028225975,0.00016774188,0.00002705015,0.00023882659,0.000673961,0.0000604059],"category_scores_gemma":[0.000056508874,0.00024085552,0.000046230867,0.0001328701,0.00033527994,0.00020688892,0.00019381045,0.0006318587,0.00023323021],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014745422,0.000056526536,0.009312794,0.000022637016,0.000059158374,0.0000049559253,0.0011682262,5.4243907e-7,0.98144025,0.000053276915,0.00007724059,0.006329851],"study_design_scores_gemma":[0.0026306922,0.0005092703,0.19865453,0.00001873536,0.0000298954,0.000019680592,0.00020683785,0.000012478896,0.79344535,0.0001529468,0.0041004936,0.00021906546],"about_ca_topic_score_codex":0.00022708336,"about_ca_topic_score_gemma":0.00004493174,"teacher_disagreement_score":0.18934175,"about_ca_system_score_codex":0.000026947693,"about_ca_system_score_gemma":0.000038898987,"threshold_uncertainty_score":0.9821803},"labels":[],"label_agreement":null},{"id":"W2953087963","doi":"10.1038/s41598-019-44019-3","title":"IκBζ facilitates protective immunity against Salmonella infection via Th1 differentiation and IgG production","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"CH.I.L.D. Foundation; National Research Foundation of Korea; National Research Foundation","keywords":"Immune system; Biology; Germinal center; Salmonella; Antibody; Microbiology; Cytokine; Immunology; B cell; Immunity; Salmonella infection; Immunoglobulin G; Bacteria","score_opus":0.007294647963480509,"score_gpt":0.2101122411267981,"score_spread":0.2028175931633176,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2953087963","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98969495,0.0004247572,0.00029507984,0.000079615056,0.007961062,0.00097004644,0.0000010377265,0.00010722764,0.00046621164],"genre_scores_gemma":[0.99332684,0.000025356678,0.000012970262,0.0000055506744,0.000020405356,0.000050600105,0.00029015308,0.000009714298,0.0062584337],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842775,0.00030097383,0.00040571662,0.0005482107,0.000080925536,0.00023641792],"domain_scores_gemma":[0.9988612,0.000035800073,0.0003232668,0.0005461911,0.00021777471,0.000015794867],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013078954,0.00015425304,0.00018891935,0.00023824596,0.00051132776,0.00009297431,0.00004867629,0.00016639267,0.00012894456],"category_scores_gemma":[0.00025787632,0.00013469442,0.00006417698,0.00026382747,0.00021406848,0.00044484183,0.0000680065,0.00022978769,0.00032676387],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007850957,0.000059331847,0.012242154,0.00003952945,0.00004826231,0.0000020737837,0.0010373273,0.000033855442,0.9725638,0.000013769672,0.0003258415,0.01355552],"study_design_scores_gemma":[0.00023963454,0.0000967097,0.12425,0.00004878456,0.000021694248,0.00017820859,0.00016748242,0.000050012797,0.86213946,0.0019558151,0.010660612,0.00019159922],"about_ca_topic_score_codex":0.00016899723,"about_ca_topic_score_gemma":0.000023080629,"teacher_disagreement_score":0.11200785,"about_ca_system_score_codex":0.000069500726,"about_ca_system_score_gemma":0.00005433865,"threshold_uncertainty_score":0.5492679},"labels":[],"label_agreement":null},{"id":"W2958628185","doi":"10.1016/j.ebiom.2019.07.005","title":"TLR9 agonist MGN1703 enhances B cell differentiation and function in lymph nodes","year":2019,"lang":"en","type":"article","venue":"EBioMedicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":36,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Maccabi Institute for Health Services Research; National Cancer Institute; European Research Council; Augustinus Fonden; Danmarks Frie Forskningsfond; Nature Conservancy of Canada; Aarhus Universitets Forskningsfond; Novo Nordisk Fonden; Deutsches Zentrum für Infektionsforschung","keywords":"TLR9; Immunology; Lymph node; Lymph; Agonist; Medicine; Biology; Cancer research; Internal medicine; Pathology; Receptor","score_opus":0.004128580619268699,"score_gpt":0.20236770284717037,"score_spread":0.1982391222279017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2958628185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99346024,0.0030516381,0.00019834987,0.000344719,0.00088392367,0.00014608774,0.000001465795,0.00002830439,0.001885293],"genre_scores_gemma":[0.9938839,0.0002562061,0.00000828049,0.000096188465,0.000037383932,0.000008360291,0.00019597315,0.0000065703443,0.0055071106],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993518,0.000084893625,0.00021109161,0.00016420847,0.000029764831,0.00015823919],"domain_scores_gemma":[0.99969405,0.0000690201,0.000080210615,0.00012579779,0.00002212154,0.000008802068],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019460268,0.00009719269,0.00016657497,0.00017897354,0.000053627722,0.000008369112,0.000048718804,0.00012280073,0.0005598171],"category_scores_gemma":[0.000018146273,0.0000776249,0.000019407897,0.00011935794,0.0000738821,0.000107665335,0.000023293587,0.00009089293,0.0005805592],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002787847,0.000039207764,0.015960796,0.000038733848,0.000020265596,6.92933e-7,0.00033893727,5.153204e-7,0.9736489,0.00011873052,0.00020805039,0.009346386],"study_design_scores_gemma":[0.0035259535,0.00023826654,0.53114235,0.00008317874,0.000031858573,0.000011084118,0.00040394865,0.0000383027,0.44788438,0.00014247434,0.0163655,0.00013272585],"about_ca_topic_score_codex":0.00008480621,"about_ca_topic_score_gemma":0.0000064467768,"teacher_disagreement_score":0.5257645,"about_ca_system_score_codex":0.000027725535,"about_ca_system_score_gemma":0.000019960256,"threshold_uncertainty_score":0.74621075},"labels":[],"label_agreement":null},{"id":"W2960015172","doi":"10.1186/s12974-019-1538-9","title":"Ciprofloxacin and levofloxacin attenuate microglia inflammatory response via TLR4/NF-kB pathway","year":2019,"lang":"en","type":"review","venue":"Journal of Neuroinflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":524,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"Canadian Institutes of Health Research; Università degli Studi di Padova; Nvidia","keywords":"Microglia; Neuroinflammation; TLR4; Chemistry; Pharmacology; Signal transduction; Inflammation; Biochemistry; Immunology; Biology","score_opus":0.03186677744855996,"score_gpt":0.2830528611925863,"score_spread":0.25118608374402634,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2960015172","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.100211486,0.896138,0.00010061713,0.00018124671,0.0021574497,0.0010350735,0.000023341923,0.00005229343,0.00010048335],"genre_scores_gemma":[0.0012927144,0.995128,0.000065544926,0.000026800037,0.00030685597,0.00002262298,0.00012763783,0.0001316738,0.0028981627],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926023,0.003166991,0.0029661038,0.00048780977,0.00021597158,0.0005608516],"domain_scores_gemma":[0.9935252,0.0011534531,0.004127423,0.0006976858,0.00041783843,0.0000783634],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002957904,0.000793089,0.002421843,0.0013873657,0.00023048795,0.00011539721,0.0005595027,0.0010244051,0.00013011135],"category_scores_gemma":[0.0007657885,0.0006507363,0.0008532421,0.00035529942,0.00018689457,0.0008040424,0.0001974844,0.0016727549,0.0013441867],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015506493,0.00004615036,0.0000077765735,0.004233001,0.00046361607,0.00015070186,0.00033836966,0.0000052120236,0.3879454,0.000048205573,0.0012051901,0.6040057],"study_design_scores_gemma":[0.0015219365,0.00064733153,0.00020323854,0.005557867,0.0007490694,0.0030221038,0.00003980443,0.0000063829743,0.022262357,0.000047646517,0.9653323,0.00060990656],"about_ca_topic_score_codex":0.0000032461069,"about_ca_topic_score_gemma":0.0000014919026,"teacher_disagreement_score":0.9641272,"about_ca_system_score_codex":0.0002266364,"about_ca_system_score_gemma":0.0008670914,"threshold_uncertainty_score":0.9995944},"labels":[],"label_agreement":null},{"id":"W2960654013","doi":"10.1007/978-1-4939-9591-2_6","title":"Quantifying Human Innate Cytokine and Chemokine Responses Ex Vivo via Pattern Recognition Receptor Stimulation","year":2019,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Biology; Immunology; Pattern recognition receptor; Innate lymphoid cell; TLR3; Chemokine; TLR7; Immune system; CCL18; TLR4; TLR5; Cytokine; Ex vivo; Toll-like receptor; In vivo","score_opus":0.03900888117446448,"score_gpt":0.37270953375931337,"score_spread":0.3337006525848489,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2960654013","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.82860434,0.000803541,0.16947293,0.00015467663,0.00038814405,0.00034387998,0.00000962292,0.000045876994,0.00017700098],"genre_scores_gemma":[0.9453437,0.00010403578,0.05329998,0.00029642842,0.00002495,0.000036817175,0.0004969243,0.000033930097,0.0003632745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9958366,0.0029051972,0.00048507197,0.00042385992,0.000024798597,0.0003244503],"domain_scores_gemma":[0.9990048,0.00041724092,0.00019637567,0.00029203744,0.00007489683,0.0000146544635],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018635389,0.00021159419,0.0003800066,0.00038866088,0.00008231284,0.000012934327,0.00012662084,0.0004715055,0.00068771973],"category_scores_gemma":[0.00036563564,0.00020393975,0.0000642452,0.0002001373,0.00012700127,0.00008433376,0.000110435714,0.00033013933,0.00019329642],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036911533,0.000031770393,0.008067653,0.000025188567,0.000048707145,0.0000031124025,0.00016077531,0.0000038042986,0.8951928,0.00011618575,0.000009877068,0.09597099],"study_design_scores_gemma":[0.0016058866,0.00035254747,0.009008635,0.000055123302,0.000020734164,0.00003694895,0.000045409415,0.00012989898,0.98234916,0.001160002,0.004979586,0.00025609098],"about_ca_topic_score_codex":0.00010988845,"about_ca_topic_score_gemma":0.0000099335475,"teacher_disagreement_score":0.11673934,"about_ca_system_score_codex":0.000049064318,"about_ca_system_score_gemma":0.000020088573,"threshold_uncertainty_score":0.83164215},"labels":[],"label_agreement":null},{"id":"W2961169875","doi":"10.1016/j.it.2019.06.005","title":"Modulation of Innate Immunity by Amyloidogenic Peptides","year":2019,"lang":"en","type":"review","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Amyloid (mycology); Biology; Immune system; Cell biology; Antimicrobial peptides; Inflammation; Amyloid disease; Extracellular; Immunology; Peptide; Biochemistry; Disease","score_opus":0.0425905397969816,"score_gpt":0.3186914832903413,"score_spread":0.2761009434933597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2961169875","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0044886614,0.9921861,0.00000857853,0.000017683642,0.0010773857,0.00035883108,0.000085485284,0.00005765654,0.0017196034],"genre_scores_gemma":[0.009575059,0.9778257,0.000015272293,0.0000072092694,0.000014092989,0.000084615196,0.004126935,0.000062529725,0.008288599],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9956925,0.0016226262,0.0015965864,0.0004733836,0.000050229104,0.00056470936],"domain_scores_gemma":[0.9973903,0.00043109816,0.0010835616,0.0010188068,0.00006697728,0.000009279806],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005966763,0.00056558923,0.002528375,0.00160751,0.00007888268,0.000009312009,0.0007332438,0.0016615764,0.0010038817],"category_scores_gemma":[0.00010657337,0.0005113029,0.00058893475,0.0008785545,0.00036609865,0.0001613406,0.00026293585,0.0012118256,0.0010492991],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013570825,0.00013440353,0.00000966647,0.0010939927,0.0007252133,0.0000017251272,0.00018465398,0.0000022025617,0.016713176,0.00033275562,0.00096739753,0.9796991],"study_design_scores_gemma":[0.0010917159,0.00027537017,0.00036492807,0.0019085488,0.00034985444,0.000095753545,0.000042478212,0.0000019589418,0.0020118263,0.000045405843,0.99333286,0.0004792731],"about_ca_topic_score_codex":0.0002793068,"about_ca_topic_score_gemma":0.000018412471,"teacher_disagreement_score":0.9923655,"about_ca_system_score_codex":0.00021158776,"about_ca_system_score_gemma":0.00018325147,"threshold_uncertainty_score":0.99990934},"labels":[],"label_agreement":null},{"id":"W2963627792","doi":"10.1101/708503","title":"A porcine ex vivo lung perfusion model to investigate bacterial pathogenesis","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Medical Research Council; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Queen's University; Queen's University Belfast","keywords":"Klebsiella pneumoniae; Ex vivo; Biology; Pathogenesis; Lung; In vivo; Microbiology; Pneumonia; Immunology; Medicine; Escherichia coli; Gene","score_opus":0.012705630540510045,"score_gpt":0.21209180706644193,"score_spread":0.19938617652593188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2963627792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99087477,0.0015348844,0.002005136,0.00040458533,0.0032531098,0.0012795482,0.00028082568,0.00034658218,0.00002055193],"genre_scores_gemma":[0.99714047,0.00030084592,0.001318211,0.0003865452,0.00026741182,0.0001825424,0.000007021745,0.00014991204,0.00024705188],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968296,0.0004067987,0.0007891842,0.0010974973,0.00012898144,0.0007479004],"domain_scores_gemma":[0.99731004,0.00006692487,0.0004587662,0.001596423,0.000442107,0.00012573373],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00079364824,0.0007128381,0.0008483591,0.0004994761,0.00022845328,0.000120677054,0.0006762569,0.0012801404,0.00042399004],"category_scores_gemma":[0.0002955381,0.0007318444,0.00023396601,0.00031849116,0.000106883075,0.00018995491,0.0009737286,0.0007554303,0.0014132486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045833617,0.00007297052,0.0007918697,0.00021074436,0.0001479926,0.000012994951,0.00004965581,0.0009892639,0.99450547,0.00015012783,0.0026063367,0.000004218437],"study_design_scores_gemma":[0.0010244374,0.000095420095,0.013912206,0.00048406198,0.00017759581,7.239207e-8,0.00000295754,0.0016423113,0.9705477,0.0000012589408,0.011209775,0.00090221653],"about_ca_topic_score_codex":0.00006407618,"about_ca_topic_score_gemma":0.0000015421077,"teacher_disagreement_score":0.023957802,"about_ca_system_score_codex":0.0002882058,"about_ca_system_score_gemma":0.00097642955,"threshold_uncertainty_score":0.99951327},"labels":[],"label_agreement":null},{"id":"W2963842139","doi":"10.1002/mgg3.852","title":"Toll‐like receptor 4 polymorphisms in Saudi population with cardiovascular diseases","year":2019,"lang":"en","type":"article","venue":"Molecular Genetics & Genomic Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"King Saud University","keywords":"Medicine; Genotype; Allele; Allele frequency; Single-nucleotide polymorphism; Population; TLR4; Internal medicine; Genotype frequency; Disease; Immunology; Bioinformatics; Receptor; Genetics; Gene; Biology; Environmental health","score_opus":0.004362381817261952,"score_gpt":0.19532262821235855,"score_spread":0.1909602463950966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2963842139","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9498035,0.04755126,0.0008973917,0.00034378193,0.00056060025,0.00053880585,0.000005013693,0.000031978787,0.00026770617],"genre_scores_gemma":[0.99747497,0.00059425697,0.00016545178,0.00027361346,0.000046952646,0.000023114892,0.0005212862,0.00003674214,0.0008636009],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99854493,0.00026804133,0.00037615394,0.0003676529,0.0001111514,0.00033207145],"domain_scores_gemma":[0.9991265,0.000036506306,0.00010596459,0.00065070705,0.000046960755,0.000033357795],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00027523524,0.00022097005,0.0004735354,0.000225735,0.000044097622,0.000006865524,0.00018462067,0.00016640368,0.0005975167],"category_scores_gemma":[0.00002871865,0.0001806468,0.00010765152,0.00017936953,0.000096643045,0.00003585459,0.000054269527,0.00016535245,0.0005140194],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035726262,0.000033838427,0.0188895,0.00002340915,0.000334625,0.00002586213,0.00032046408,0.0015886943,0.9697576,0.00012676782,0.0002056373,0.0083363345],"study_design_scores_gemma":[0.013842391,0.0017986059,0.60684973,0.0004582865,0.00072803267,0.00023398934,0.00039546032,0.00017480685,0.19781391,0.0002398758,0.17636977,0.0010951614],"about_ca_topic_score_codex":0.0002702123,"about_ca_topic_score_gemma":0.0000112089565,"teacher_disagreement_score":0.7719437,"about_ca_system_score_codex":0.000099014556,"about_ca_system_score_gemma":0.000063050444,"threshold_uncertainty_score":0.7366563},"labels":[],"label_agreement":null},{"id":"W2964326307","doi":"10.1016/j.bbi.2019.07.021","title":"TLR3 preconditioning induces anti-inflammatory and anti-ictogenic effects in mice mediated by the IRF3/IFN-β axis","year":2019,"lang":"en","type":"article","venue":"Brain Behavior and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Hippocampal formation; TLR3; Neuroscience; Inhibitory postsynaptic potential; Proinflammatory cytokine; Population; TLR4; Blockade; Pharmacology; Inflammation; Chemistry; Receptor; Biology; Immunology; Toll-like receptor; Medicine; Internal medicine; Innate immune system","score_opus":0.007110680207416481,"score_gpt":0.2295342534630609,"score_spread":0.2224235732556444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2964326307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99351865,0.0049866294,0.0000026364805,0.0002181893,0.00032800634,0.0007109451,0.00002196698,0.000049236998,0.00016376437],"genre_scores_gemma":[0.99850917,0.00026859704,0.000004045696,0.00013245018,0.000009264255,0.00006808828,0.0002955987,0.000018455119,0.00069430727],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99809533,0.000913213,0.00035511484,0.00025368456,0.000046567795,0.00033610893],"domain_scores_gemma":[0.99862796,0.00086387503,0.00014845579,0.0002971223,0.00003969522,0.000022899423],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084419793,0.00022388936,0.0003184933,0.00014998703,0.00035691072,0.00005047379,0.00020652793,0.00032159174,0.0001937692],"category_scores_gemma":[0.00019222226,0.00017950867,0.000053438544,0.0001602045,0.0002573923,0.00033124845,0.00013802777,0.00058955455,0.00013313754],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060902323,0.000076616794,0.06793696,0.00003711096,0.000047263788,0.000002419957,0.0011917581,3.730815e-7,0.9255129,0.000038845486,0.00047881386,0.004616051],"study_design_scores_gemma":[0.0015504983,0.00011237934,0.7537628,0.00006723705,0.00004357417,0.00007417014,0.0005358,0.0000019854585,0.24206387,0.000012879072,0.0015780937,0.00019675936],"about_ca_topic_score_codex":0.00034881165,"about_ca_topic_score_gemma":0.00003905695,"teacher_disagreement_score":0.6858258,"about_ca_system_score_codex":0.00003137894,"about_ca_system_score_gemma":0.000048650196,"threshold_uncertainty_score":0.73201513},"labels":[],"label_agreement":null},{"id":"W2966201555","doi":"10.1016/j.jtho.2019.07.023","title":"Gram-Negative Pneumonia Augments Non–Small Cell Lung Cancer Metastasis through Host Toll-like Receptor 4 Activation","year":2019,"lang":"en","type":"article","venue":"Journal of Thoracic Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"TLR4; Metastasis; Lipopolysaccharide; Medicine; In vivo; Innate immune system; Toll-like receptor; Cancer research; Immunology; Immune system; Biology; Cancer; Internal medicine","score_opus":0.015332431938158336,"score_gpt":0.3449681084688333,"score_spread":0.32963567653067494,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966201555","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98972404,0.0013609647,0.0006072641,0.0017604745,0.0040898975,0.000476275,0.0000149357975,0.00001751364,0.0019486247],"genre_scores_gemma":[0.98990774,0.0008328232,0.0013423415,0.0005058862,0.00014939198,0.000026963025,0.000028863613,0.000030189298,0.0071758013],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976261,0.0008184451,0.0008224817,0.00023680493,0.00009563978,0.00040048274],"domain_scores_gemma":[0.99747103,0.00042660005,0.0014314429,0.00024276174,0.000393685,0.00003446377],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00080858,0.00025001355,0.0006997207,0.00024780942,0.00015623814,0.000023385051,0.00034433586,0.00045619943,0.0016300492],"category_scores_gemma":[0.00009972183,0.00020455343,0.00024295803,0.00023320041,0.000091380614,0.0005651511,0.00009051175,0.0007411747,0.0004653547],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003217459,0.00026415507,0.0014529645,0.00008024673,0.00065528264,0.000009595568,0.002331762,0.000060584563,0.9638381,0.000019694042,0.0067446036,0.021325545],"study_design_scores_gemma":[0.0017300522,0.0013601521,0.0058238734,0.00018235046,0.00035209698,0.000106101426,0.0012882885,0.00001574983,0.86578643,0.000060355254,0.123052806,0.00024176162],"about_ca_topic_score_codex":0.000109336695,"about_ca_topic_score_gemma":0.000017003984,"teacher_disagreement_score":0.1163082,"about_ca_system_score_codex":0.0005569022,"about_ca_system_score_gemma":0.000560479,"threshold_uncertainty_score":0.9992826},"labels":[],"label_agreement":null},{"id":"W2966240095","doi":"10.1016/j.molimm.2019.07.011","title":"The novel methyltransferase SETD4 regulates TLR agonist-induced expression of cytokines through methylation of lysine 4 at histone 3 in macrophages","year":2019,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of California, Davis; National Institutes of Health; Guangdong Science and Technology Department; Natural Science Foundation of Guangdong Province; Institute of Genetics; National Natural Science Foundation of China; Wellcome Trust","keywords":"Proinflammatory cytokine; Cell biology; p38 mitogen-activated protein kinases; Signal transduction; MAPK/ERK pathway; CXCL10; Chemistry; Histone; Chemokine; Histone methylation; Biology; Molecular biology; Inflammation; Gene expression; DNA methylation; Immunology; Biochemistry; Gene","score_opus":0.008484767178084631,"score_gpt":0.25125645877534947,"score_spread":0.24277169159726483,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966240095","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9855151,0.012185984,0.0006551262,0.00040052415,0.00039264065,0.00055106985,0.000011131541,0.000023537115,0.0002648545],"genre_scores_gemma":[0.99844515,0.00035594325,0.00020644038,0.000028569608,0.0000045684455,0.000040391078,0.00014998775,0.000025121159,0.0007438149],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99792653,0.00060924084,0.0007569038,0.0002979783,0.000070531525,0.0003388224],"domain_scores_gemma":[0.9984577,0.0003554732,0.00037099927,0.0006593678,0.00014986905,0.00000662253],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00047492812,0.00022723319,0.00052467216,0.00018263831,0.0001230441,0.0000053971726,0.00032997035,0.0004036935,0.00016858621],"category_scores_gemma":[0.00015222891,0.00017490759,0.00016698305,0.0002820209,0.00032472456,0.00012136621,0.00014218685,0.0002607069,0.00006948673],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016885966,0.00011666948,0.0001413698,0.00003738166,0.00017775767,0.0000039906454,0.0006729578,0.00007557411,0.99381274,0.001575957,0.000020721043,0.0016762766],"study_design_scores_gemma":[0.0023804796,0.0003347363,0.006166487,0.00007502213,0.000040137696,0.000031581858,0.00016612168,0.000009595305,0.98723114,0.00026051802,0.0031435743,0.00016058313],"about_ca_topic_score_codex":0.00024761623,"about_ca_topic_score_gemma":0.000019466208,"teacher_disagreement_score":0.012930032,"about_ca_system_score_codex":0.000085805885,"about_ca_system_score_gemma":0.00006420077,"threshold_uncertainty_score":0.7132525},"labels":[],"label_agreement":null},{"id":"W2966568342","doi":"10.1165/rcmb.2018-0373oc","title":"Toll-like Receptor 8 Stability is Regulated by Ring Finger 216 in Response to Circulating MicroRNAs","year":2019,"lang":"en","type":"article","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"National Heart, Lung, and Blood Institute; U.S. Department of Veterans Affairs","keywords":"Ubiquitin ligase; Innate immune system; Cell biology; ARDS; Ubiquitin; microRNA; Toll-like receptor; RNA; Biology; Immune system; Protein degradation; Receptor; Small interfering RNA; TLR3; Proteasome; Immunology; Medicine; Biochemistry; Internal medicine; Gene; Lung","score_opus":0.005309645634729737,"score_gpt":0.22858972062657834,"score_spread":0.2232800749918486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2966568342","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953275,0.0033910703,0.0002628113,0.00043516498,0.0002749941,0.00019911419,0.000008028988,0.000009838525,0.000091496455],"genre_scores_gemma":[0.9978289,0.000041058545,0.00022628509,0.0017350726,0.00001151002,0.0000037836817,0.0000069626763,0.00001867154,0.00012773834],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972017,0.0014026656,0.000675079,0.00030727894,0.000045028108,0.00036824757],"domain_scores_gemma":[0.9988228,0.0002329231,0.0004854806,0.0002734217,0.00012758243,0.000057803703],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013846785,0.000199624,0.00051795115,0.00031729383,0.00006210888,0.000013322161,0.00020049095,0.00018167707,0.00018669086],"category_scores_gemma":[0.0001523366,0.00017830862,0.000113621834,0.00027018608,0.00022506269,0.00007496129,0.000085811706,0.00037292726,0.00007497364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026988978,0.000045328252,0.0063761356,0.000010225947,0.00005844665,0.000013065461,0.00069565745,0.000008570352,0.980223,0.0000067267065,0.00033520628,0.009528748],"study_design_scores_gemma":[0.001443229,0.0021326365,0.0033771137,0.000053751504,0.0000162018,0.000061929386,0.0006076238,0.0000022296467,0.88053817,0.000013359872,0.111529075,0.00022469659],"about_ca_topic_score_codex":0.00004124094,"about_ca_topic_score_gemma":0.000001638609,"teacher_disagreement_score":0.111193866,"about_ca_system_score_codex":0.00008246142,"about_ca_system_score_gemma":0.00014183293,"threshold_uncertainty_score":0.7271214},"labels":[],"label_agreement":null},{"id":"W2969472985","doi":"10.1101/742098","title":"Differential remodeling of the electron transport chain is required to support TLR3 and TLR4 signaling and cytokine production in macrophages","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa; Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"TLR3; Cell biology; TLR4; Cytokine; Biology; Innate immune system; Immune system; Mitochondrion; Mitochondrial ROS; Signal transduction; Toll-like receptor; Immunology","score_opus":0.009524912117987385,"score_gpt":0.21067017294071427,"score_spread":0.20114526082272688,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2969472985","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99628335,0.0012253918,0.00026453513,0.00039947982,0.00078703,0.0009429891,0.00004883137,0.000046800546,0.0000016104715],"genre_scores_gemma":[0.99923116,0.00039673553,0.00011371006,0.000056970362,0.00007046842,0.0000449293,0.0000015789859,0.000045433575,0.00003902801],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980701,0.00021821812,0.00060059346,0.00065434986,0.000084746316,0.0003719449],"domain_scores_gemma":[0.99884886,0.000032557255,0.0003217668,0.0006096453,0.00015980782,0.000027353044],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005925433,0.0003312107,0.0005238195,0.0002809532,0.000109594184,0.000024318837,0.0002312834,0.00049148494,0.00003071783],"category_scores_gemma":[0.00009016625,0.0002919839,0.00008119642,0.00023097936,0.000111959154,0.000104623476,0.00019900051,0.00056978577,0.00000874266],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035995798,0.000041585045,0.0057276534,0.00028199324,0.000087093,0.0000020140367,0.0001568754,0.000102149366,0.99316704,0.000035360496,0.00002328035,0.000014977054],"study_design_scores_gemma":[0.0005520884,0.000098776894,0.08562022,0.00040246441,0.00007897847,1.3443133e-7,0.0000073791193,0.000045102264,0.91259253,0.0000019065141,0.00032822407,0.00027222725],"about_ca_topic_score_codex":0.000074875854,"about_ca_topic_score_gemma":0.000004894524,"teacher_disagreement_score":0.08057456,"about_ca_system_score_codex":0.00008656956,"about_ca_system_score_gemma":0.00023303171,"threshold_uncertainty_score":0.9999532},"labels":[],"label_agreement":null},{"id":"W2971786659","doi":"10.3390/ijms20184341","title":"Inflammatory Response to Different Toxins in Experimental Sepsis Models","year":2019,"lang":"en","type":"review","venue":"International Journal of Molecular Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":215,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Lipoteichoic acid; Sepsis; Lipopolysaccharide; Immune system; Inflammation; Peptidoglycan; Immunology; Biology; Medicine; Microbiology; Bacteria; Staphylococcus aureus","score_opus":0.041696733286113924,"score_gpt":0.34646266970995776,"score_spread":0.30476593642384386,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2971786659","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.1128291,0.8844559,0.00018425484,0.00017149094,0.0019051404,0.00024198735,0.00000565034,0.000005665898,0.00020077592],"genre_scores_gemma":[0.081544615,0.917614,0.00013605945,0.00017871668,0.000065456625,0.00002434325,0.000014980068,0.00002525601,0.0003966221],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975426,0.00077267934,0.0009471875,0.00023416021,0.0002778856,0.00022546382],"domain_scores_gemma":[0.998785,0.0002610139,0.00063185615,0.00015806349,0.00013495822,0.000029090666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011654411,0.00024394724,0.00073876994,0.0013012784,0.000044006243,0.00007292552,0.0012518977,0.00021760308,0.00012358198],"category_scores_gemma":[0.00013883157,0.00017901137,0.00042255747,0.00017792218,0.000120455436,0.00028781427,0.00021350615,0.0003544246,0.00020096012],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027674662,0.0006130886,0.00003758039,0.00046419605,0.001559998,0.00078539725,0.0028770026,0.0028084829,0.28278866,0.0023275213,0.0008585487,0.7021121],"study_design_scores_gemma":[0.0013633942,0.0010058393,0.000068024325,0.0089504775,0.00012523473,0.0009976112,0.00046476306,0.000027882399,0.05658182,0.00017421223,0.9296432,0.00059751986],"about_ca_topic_score_codex":0.000005798304,"about_ca_topic_score_gemma":0.0000014188496,"teacher_disagreement_score":0.92878467,"about_ca_system_score_codex":0.00030516222,"about_ca_system_score_gemma":0.0005545527,"threshold_uncertainty_score":0.7299872},"labels":[],"label_agreement":null},{"id":"W2972595417","doi":"10.1016/j.bbr.2019.112221","title":"Acute neuroinflammation elicited by TLR-3 systemic activation combined with early life stress induces working memory impairments in male adolescent mice","year":2019,"lang":"en","type":"article","venue":"Behavioural Brain Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Neuroinflammation; Working memory; Prefrontal cortex; Psychology; Oxidative stress; Endocrinology; Hippocampus; Maternal deprivation; Agonist; Internal medicine; Inflammation; Neuroscience; Medicine; Receptor; Cognition","score_opus":0.034392404631075055,"score_gpt":0.2931503431417428,"score_spread":0.25875793851066775,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2972595417","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967756,0.00020092094,0.000008352357,0.0009899792,0.0001569252,0.0016679321,0.0000109946295,0.00006245869,0.00012681456],"genre_scores_gemma":[0.99541676,0.000031525786,0.0000066564035,0.000065349624,0.000017420696,0.000112973976,0.00052657863,0.000034196622,0.0037885301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99675405,0.0013651398,0.000493534,0.0004270632,0.00027554194,0.0006846942],"domain_scores_gemma":[0.9988149,0.00035035098,0.00020379147,0.0003666511,0.0002151708,0.000049145085],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011155467,0.00022883459,0.00030601944,0.00056180375,0.00021724204,0.000095180425,0.0003648619,0.00031629225,0.00017823209],"category_scores_gemma":[0.00012620022,0.00019981257,0.000052518364,0.0006169616,0.000109669665,0.00046307166,0.00013124356,0.00096206553,0.00042204428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027709082,0.00016774837,0.09985904,0.000051303454,0.000067080706,0.00002331468,0.00080724974,0.000014190635,0.89402324,0.000012463661,0.0008883295,0.0013151575],"study_design_scores_gemma":[0.004862421,0.0010265713,0.42903504,0.00091773394,0.00002319094,0.00008601605,0.0014608217,0.00004272824,0.5621236,0.0000030020544,0.000111298315,0.00030759018],"about_ca_topic_score_codex":0.00073055044,"about_ca_topic_score_gemma":0.000030785304,"teacher_disagreement_score":0.3318996,"about_ca_system_score_codex":0.0002471206,"about_ca_system_score_gemma":0.00016027852,"threshold_uncertainty_score":0.814812},"labels":[],"label_agreement":null},{"id":"W2976597620","doi":"10.1038/s41598-019-50310-0","title":"Comparative transcriptomics between species attributes reactogenicity pathways induced by the capsular group B meningococcal vaccine, 4CMenB, to the membrane-bound endotoxin of its outer membrane vesicle component","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"NIHR Oxford Biomedical Research Centre; University of Oxford; Academy of Medical Sciences; Medical Research Council; National Institute for Health and Care Research","keywords":"Reactogenicity; Bacterial outer membrane; Lipopolysaccharide; Microbiology; Vaccination; Biology; Medicine; Virology; Immunology; Gene; Antigen; Immunization; Biochemistry","score_opus":0.03488325484975867,"score_gpt":0.24372071407888243,"score_spread":0.20883745922912378,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2976597620","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9933587,0.0007547493,0.000074024785,0.0007379701,0.0030032874,0.0015637975,0.000072040566,0.00004415665,0.000391308],"genre_scores_gemma":[0.99722373,0.000011412378,0.000011896047,0.00005336852,0.000042045736,0.000049225742,0.0005563175,0.000016347838,0.0020356264],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99704343,0.0006458375,0.0009879402,0.0006118448,0.00022746962,0.00048349987],"domain_scores_gemma":[0.9978242,0.00033729023,0.0005374552,0.0010355001,0.00022237004,0.00004320831],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003088461,0.00027857328,0.00059287983,0.0001318871,0.0005683495,0.00013092175,0.0005071865,0.00018226814,0.00028824955],"category_scores_gemma":[0.00009837595,0.00017254987,0.00020951618,0.00042454666,0.00020332668,0.00024927233,0.00014033029,0.00036709418,0.00023636434],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015635822,0.000082161954,0.000722639,0.000020937003,0.00021311578,0.0000055446676,0.004512948,0.000020592925,0.9892393,0.00020418911,0.004658547,0.00016370996],"study_design_scores_gemma":[0.0005621754,0.00011695356,0.008178113,0.00003375316,0.00006710553,0.00006706991,0.00088146585,0.0000141038445,0.9079809,0.00004198798,0.08187668,0.0001796489],"about_ca_topic_score_codex":0.000100187535,"about_ca_topic_score_gemma":0.000033386143,"teacher_disagreement_score":0.08125831,"about_ca_system_score_codex":0.000073537485,"about_ca_system_score_gemma":0.00010227251,"threshold_uncertainty_score":0.70363796},"labels":[],"label_agreement":null},{"id":"W2978373462","doi":"10.29173/aar53","title":"Too Much of a Good Thing: High T Cell Count Can Kill Newborns","year":2019,"lang":"en","type":"article","venue":"Alberta Academic Review","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Immune system; Acquired immune system; Immunology; Immunity; CD8; Spleen; Biology; Flow cytometry; Cytotoxic T cell; Listeria monocytogenes; Bacteria","score_opus":0.007838161656608252,"score_gpt":0.23878003332805153,"score_spread":0.23094187167144328,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2978373462","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.62831515,0.3463873,0.000009401878,0.0056435107,0.00088011933,0.0012639423,0.000011938514,0.000034543937,0.017454097],"genre_scores_gemma":[0.76535267,0.17823204,0.00002941003,0.0032871326,0.000033403336,0.00004003619,0.00021184364,0.000029417446,0.052784067],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982181,0.00033058182,0.0007619099,0.0002862347,0.00006337382,0.00033978652],"domain_scores_gemma":[0.9984919,0.00044904902,0.000441621,0.0005129333,0.00008217378,0.000022352806],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00061033113,0.00021564843,0.00065034995,0.000066119974,0.00005191156,0.000003915437,0.00043425974,0.0004287049,0.0017828974],"category_scores_gemma":[0.00018531272,0.00017232937,0.00016341277,0.0001933883,0.000061622835,0.00014680585,0.00009446411,0.0006427114,0.00317933],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021299078,0.00010478863,0.003934932,0.005130596,0.00034106107,0.0000020104274,0.0017298236,0.000003138056,0.86527544,0.016927775,0.087919496,0.018417958],"study_design_scores_gemma":[0.0006931859,0.0001176759,0.001165036,0.0019908927,0.00015338037,0.00003988548,0.000043669963,0.0000014468526,0.10168859,0.0001255047,0.8937499,0.00023084028],"about_ca_topic_score_codex":0.0012355156,"about_ca_topic_score_gemma":0.000016873846,"teacher_disagreement_score":0.8058304,"about_ca_system_score_codex":0.000046899582,"about_ca_system_score_gemma":0.00014076693,"threshold_uncertainty_score":0.9991296},"labels":[],"label_agreement":null},{"id":"W2979830967","doi":"10.1182/blood.v122.21.3918.3918","title":"Heterodimer-Specific Stimulation Of Toll-Like Receptor 2 Induces Divergent Downstream Effects In Primary Samples Of Precursor B Cell Acute Lymphoblastic Leukemia","year":2013,"lang":"en","type":"article","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Child and Family Research Institute; BC Children's Hospital; University of British Columbia","funders":"","keywords":"TLR2; Immune system; Biology; Receptor; Toll-like receptor; In vivo; Stimulation; Cell biology; Cancer research; Immunology; Chemistry; Innate immune system; Biochemistry; Endocrinology","score_opus":0.006949633259134538,"score_gpt":0.19396529618064276,"score_spread":0.18701566292150823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2979830967","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99651664,0.0021584034,0.000052385396,0.000010208581,0.0003883258,0.00055368146,0.00001842693,0.000021836702,0.00028010318],"genre_scores_gemma":[0.99881434,0.0002912264,0.00025933265,0.0000096282865,0.000014060922,0.000051318075,0.00023555706,0.000012369057,0.00031213736],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99877834,0.0002498726,0.00048281153,0.00020903807,0.00005618604,0.00022374827],"domain_scores_gemma":[0.99908113,0.00030227753,0.00027703427,0.0002458984,0.00007897055,0.000014659751],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001333738,0.0001645793,0.00036254004,0.00019282587,0.000042674856,0.000006873211,0.00015966495,0.0002299532,0.00034930534],"category_scores_gemma":[0.000032452128,0.00014485627,0.00008455896,0.0001431348,0.00009852525,0.00017667908,0.00007116983,0.000113659815,0.00025323706],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027310548,0.0003893018,0.005465923,0.0001230011,0.0001429927,8.681778e-7,0.00051739934,0.00005539791,0.9883339,0.000017517506,0.0005729321,0.0041076527],"study_design_scores_gemma":[0.0031991631,0.00036862827,0.16844843,0.00010376473,0.0000717997,0.000004619312,0.00003354217,0.0000034923632,0.82727844,0.000019539431,0.0003502038,0.000118379176],"about_ca_topic_score_codex":0.00014370821,"about_ca_topic_score_gemma":0.000002999304,"teacher_disagreement_score":0.16298251,"about_ca_system_score_codex":0.00006883133,"about_ca_system_score_gemma":0.00009080527,"threshold_uncertainty_score":0.59070677},"labels":[],"label_agreement":null},{"id":"W2980161083","doi":"10.1128/iai.00678-19","title":"Early Growth Response 1 Deficiency Protects the Host against Pseudomonas aeruginosa Lung Infection","year":2019,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Canada Foundation for Innovation; Cystic Fibrosis Canada; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Biology; CXCL2; CXCL1; Proinflammatory cytokine; Pseudomonas aeruginosa; Chemokine; Microbiology; Immune system; Immunology; Tumor necrosis factor alpha; Inflammation; Bacteria; Chemokine receptor","score_opus":0.006958337140128836,"score_gpt":0.2211975115258504,"score_spread":0.21423917438572157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980161083","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99408996,0.00058602326,0.00018689522,0.0003278099,0.0009435054,0.00079647545,0.0000028213162,0.00016124982,0.002905286],"genre_scores_gemma":[0.9979303,0.00037994792,0.0000038402773,0.00015635973,0.000022632144,0.00006302746,0.000025495283,0.000015688356,0.001402693],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997677,0.0014311746,0.00030678295,0.0002225025,0.00005725594,0.0003052756],"domain_scores_gemma":[0.9989233,0.00032249282,0.00017793119,0.00039600005,0.00016099856,0.00001928718],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013408015,0.0002067178,0.00019682715,0.00022242336,0.000827922,0.000079392084,0.00011426644,0.00026949533,0.00018788394],"category_scores_gemma":[0.0004182235,0.00015521566,0.000101826365,0.00035095497,0.00018732267,0.00041924202,0.000110088506,0.00067183614,0.00081556867],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012002367,0.00010548717,0.055272486,0.000042768756,0.000065008746,8.7909655e-7,0.0012212427,0.00000505104,0.93815476,0.00070728763,0.00023470703,0.0029901012],"study_design_scores_gemma":[0.0010818132,0.00040823538,0.8470955,0.00004752968,0.000022773616,0.00007896728,0.00008034536,0.000022759164,0.13959429,0.000055549346,0.011307769,0.00020448792],"about_ca_topic_score_codex":0.0019380837,"about_ca_topic_score_gemma":0.00002726631,"teacher_disagreement_score":0.79856044,"about_ca_system_score_codex":0.00008184253,"about_ca_system_score_gemma":0.00007811394,"threshold_uncertainty_score":0.9999624},"labels":[],"label_agreement":null},{"id":"W2980670703","doi":"10.1177/1753425919878839","title":"IFN- <b>β</b> signalling regulates RAW 264.7 macrophage activation, cytokine production, and killing activity","year":2019,"lang":"en","type":"article","venue":"Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research","keywords":"Cytokine; Macrophage; Context (archaeology); Immunology; Biology; Proinflammatory cytokine; Immune system; Interferon; Interferon type I; Signalling; Interleukin 10; Inflammation; Cell biology; In vitro; Genetics","score_opus":0.009302134960859099,"score_gpt":0.22369719038067537,"score_spread":0.21439505541981627,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2980670703","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99660826,0.00072862994,0.00027483192,0.0006465936,0.00069083547,0.00042011036,0.000003585707,0.00014695828,0.0004802109],"genre_scores_gemma":[0.9957304,0.00022604378,0.000053236305,0.000058857404,0.000046234247,0.000016926326,0.00007894742,0.00002738104,0.0037619777],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984311,0.0004970707,0.0003374977,0.00032673441,0.00005911863,0.00034850358],"domain_scores_gemma":[0.99887383,0.00020885681,0.00023862944,0.0004653788,0.00019367538,0.000019651585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008083181,0.00023605942,0.0003037891,0.00019506083,0.00048775296,0.000047125162,0.00019091433,0.0002819509,0.00036786482],"category_scores_gemma":[0.000295466,0.0002232307,0.00006521992,0.00027659308,0.00016804315,0.00061628746,0.0001353144,0.000633274,0.00034438225],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004968654,0.00007408669,0.0009537906,0.000043830823,0.00011245205,9.15597e-7,0.00083151896,0.00013532785,0.9886455,0.00013507425,0.00015263956,0.008417997],"study_design_scores_gemma":[0.0006346614,0.00010834031,0.030960625,0.000120128236,0.000022666274,0.00004100542,0.0002117059,0.00007344076,0.96173924,0.00023631734,0.0056017367,0.0002501545],"about_ca_topic_score_codex":0.00027827654,"about_ca_topic_score_gemma":0.000007645509,"teacher_disagreement_score":0.030006833,"about_ca_system_score_codex":0.00007128661,"about_ca_system_score_gemma":0.000059928978,"threshold_uncertainty_score":0.91030836},"labels":[],"label_agreement":null},{"id":"W2981694477","doi":"10.1126/science.aau6391","title":"Palmitoylation of NOD1 and NOD2 is required for bacterial sensing","year":2019,"lang":"en","type":"article","venue":"Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":254,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University Health Network; SickKids Foundation; University of Toronto; Princess Margaret Cancer Centre; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; National Natural Science Foundation of China","keywords":"NOD1; Palmitoylation; NOD2; Endosome; Cell biology; Intracellular; Biology; Signal transduction; Pattern recognition receptor; Nod; Chemistry; Receptor; Innate immune system; Biochemistry; Cysteine; Gene; Enzyme","score_opus":0.010492075914991551,"score_gpt":0.24568901849876798,"score_spread":0.23519694258377644,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981694477","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99853516,0.00011694872,0.0002133271,0.00010759768,0.0005969981,0.00014365195,0.0000025598638,0.0000070914666,0.000276642],"genre_scores_gemma":[0.99924344,0.000006958418,0.0002434961,0.000025054838,0.000010790999,6.253036e-7,0.00000580013,0.0000019131135,0.00046194062],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9996225,0.00001942379,0.00010931119,0.00011713425,0.00002081586,0.00011080669],"domain_scores_gemma":[0.9997056,0.000045294004,0.0000670226,0.00010449618,0.00007310772,0.000004495669],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035401384,0.000035820027,0.00007269428,0.000063221276,0.000086985696,0.000010161222,0.000058527563,0.000045310473,0.000049652837],"category_scores_gemma":[0.00008433901,0.00003115819,0.0000153213,0.00008903508,0.00019373708,0.00019323059,0.00002742649,0.000022523638,0.000041882933],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000106183215,0.000002353227,0.00028074044,0.000008319655,0.0000027576732,1.9772374e-8,0.00041911597,2.9187194e-7,0.9911127,0.00020316901,0.000024472572,0.007839853],"study_design_scores_gemma":[0.0004175212,0.00007008104,0.00973757,0.00001838168,0.0000036104518,0.000005580774,0.000069268914,0.00009604516,0.9839167,0.00010644534,0.0055179247,0.00004087322],"about_ca_topic_score_codex":0.0000070673805,"about_ca_topic_score_gemma":5.711e-7,"teacher_disagreement_score":0.00945683,"about_ca_system_score_codex":0.000009118557,"about_ca_system_score_gemma":0.00005845113,"threshold_uncertainty_score":0.1270594},"labels":[],"label_agreement":null},{"id":"W2981905539","doi":"10.1097/aln.0000000000002992","title":"Sevoflurane Promotes Bactericidal Properties of Macrophages through Enhanced Inducible Nitric Oxide Synthase Expression in Male Mice","year":2019,"lang":"en","type":"article","venue":"Anesthesiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Society of Nephrology","funders":"National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Sevoflurane; Lipopolysaccharide; Proinflammatory cytokine; Nitric oxide synthase; In vivo; Tumor necrosis factor alpha; Medicine; Macrophage; Phagocytosis; Pharmacology; Immunology; Inflammation; Molecular biology; Microbiology; In vitro; Biology; Nitric oxide; Biochemistry; Endocrinology","score_opus":0.012141667206809799,"score_gpt":0.2179969444375515,"score_spread":0.2058552772307417,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2981905539","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953953,0.0035984411,0.000009009096,0.00006339113,0.00014878972,0.00046371427,0.0000018916841,0.000035506484,0.00028392914],"genre_scores_gemma":[0.9979324,0.00020645407,0.00013501928,0.000089057205,0.000012747227,0.000050285227,0.00003789027,0.000018438473,0.0015177461],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982491,0.0005378743,0.00047751435,0.00033180363,0.000033771004,0.00036994639],"domain_scores_gemma":[0.9991853,0.00016981589,0.00022233356,0.0003453877,0.00006742292,0.000009715817],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026633614,0.00020122607,0.000483159,0.00018119802,0.000054505545,0.0000053605577,0.0002399243,0.00039089436,0.00074604014],"category_scores_gemma":[0.00012812368,0.00015539261,0.000070409485,0.00020294728,0.00016982724,0.00023278098,0.00007225858,0.00024552218,0.00076610246],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011050443,0.00014168862,0.0067238095,0.00009442812,0.000027334821,0.000013144248,0.0009270805,0.000009239432,0.99021965,0.000025823145,0.00005849303,0.0006542621],"study_design_scores_gemma":[0.0009398624,0.00031812533,0.058957558,0.00015848222,0.000011433879,0.00015999787,0.00041894504,0.0000019682136,0.93792427,0.000042754025,0.0008972397,0.00016935609],"about_ca_topic_score_codex":0.00021166216,"about_ca_topic_score_gemma":0.0000040858163,"teacher_disagreement_score":0.052295376,"about_ca_system_score_codex":0.000024436342,"about_ca_system_score_gemma":0.00007161043,"threshold_uncertainty_score":0.9846953},"labels":[],"label_agreement":null},{"id":"W2982066820","doi":"10.1101/817528","title":"Identification and characterization of zebrafish Tlr4 co-receptor Md-2","year":2019,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institutes of Health; University of Oregon; American Heart Association; Pew Charitable Trusts","keywords":"Zebrafish; Biology; Amniote; Innate immune system; Danio; Gene; TLR4; Genetics; Cell biology; Immune system; Vertebrate","score_opus":0.007999532459472495,"score_gpt":0.20848851312564498,"score_spread":0.2004889806661725,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982066820","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947671,0.0012333859,0.0008604939,0.00012697249,0.0017159325,0.0007317373,0.00042296402,0.0001357699,0.0000056159574],"genre_scores_gemma":[0.99860007,0.00097603037,0.00005783307,0.000047503374,0.00008315773,0.000075059645,0.00003584915,0.000056933815,0.00006759516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99809355,0.00029262353,0.0006938461,0.0005560327,0.00007997152,0.00028400996],"domain_scores_gemma":[0.9978597,0.000063224055,0.0008562208,0.00081145845,0.00038032694,0.000029053688],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00059811666,0.00033115415,0.0005105833,0.0003079192,0.00010903648,0.0000732279,0.00029502396,0.000798106,0.0001379247],"category_scores_gemma":[0.00012997992,0.00036299182,0.000099104145,0.0001721669,0.00016289736,0.0002382163,0.00019668166,0.00045021085,0.00068416406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010900969,0.00006500608,0.0020771374,0.00033303178,0.0001732791,6.136828e-7,0.000030664585,0.0000018073251,0.9966007,0.00022782561,0.00037321064,0.000007751801],"study_design_scores_gemma":[0.00045100026,0.000040104147,0.122375876,0.00018115019,0.00006985601,1.8572944e-8,0.0000026827938,0.000016978225,0.86483777,3.9010155e-7,0.011720828,0.00030338066],"about_ca_topic_score_codex":0.00001543398,"about_ca_topic_score_gemma":1.5827915e-7,"teacher_disagreement_score":0.13176292,"about_ca_system_score_codex":0.00008087578,"about_ca_system_score_gemma":0.00024601343,"threshold_uncertainty_score":0.9998822},"labels":[],"label_agreement":null},{"id":"W2982083490","doi":"10.3390/cells8111314","title":"Suppression of the Peripheral Immune System Limits the Central Immune Response Following Cuprizone-Feeding: Relevance to Modelling Multiple Sclerosis","year":2019,"lang":"en","type":"article","venue":"Cells","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":33,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"","keywords":"Immune system; Multiple sclerosis; Peripheral; Relevance (law); Neuroscience; Medicine; Immunology; Biology; Internal medicine","score_opus":0.016690641616344804,"score_gpt":0.20519344146702118,"score_spread":0.18850279985067636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2982083490","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.990996,0.0033955693,0.0007035494,0.00037672208,0.0034102695,0.0008301399,0.000008407999,0.00005687802,0.0002224889],"genre_scores_gemma":[0.9949571,0.000068079826,0.00010628179,0.000037888436,0.000028654631,0.00002591247,0.000009891351,0.000031889766,0.0047343206],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99774337,0.0007435227,0.00060361595,0.0002923798,0.00010781364,0.00050929916],"domain_scores_gemma":[0.9981565,0.0006551641,0.00026712156,0.0008248422,0.00007443468,0.000021965301],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009767356,0.00022539173,0.00037640083,0.000070763446,0.00039950406,0.00003207762,0.0006387113,0.00022407224,0.000060329126],"category_scores_gemma":[0.00015483455,0.00013955463,0.00035470707,0.0002485112,0.0000785228,0.00017281793,0.00020162213,0.00033697186,0.0002731954],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025574767,0.0000319219,0.00031181384,0.00004156996,0.00008256929,6.966944e-7,0.0025258479,0.007998753,0.9857805,0.00008861488,0.00016397644,0.00041625582],"study_design_scores_gemma":[0.0011704642,0.000117687334,0.008672865,0.00067693315,0.000041231953,0.000007145039,0.0013389299,0.0017859702,0.9795141,0.0000028206048,0.0064944928,0.0001773498],"about_ca_topic_score_codex":0.00011793885,"about_ca_topic_score_gemma":0.0000013273833,"teacher_disagreement_score":0.008361052,"about_ca_system_score_codex":0.00012807682,"about_ca_system_score_gemma":0.000078116216,"threshold_uncertainty_score":0.56908727},"labels":[],"label_agreement":null},{"id":"W2986038196","doi":"10.1016/j.jfma.2019.10.016","title":"Association between interleukin-8 rs4073 polymorphism and prostate cancer: A meta-analysis","year":2019,"lang":"en","type":"review","venue":"Journal of the Formosan Medical Association","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"Taipei Medical University; Ministry of Science and Technology, Taiwan","keywords":"Meta-analysis; Medicine; Prostate cancer; Odds ratio; Confidence interval; Genetic model; Internal medicine; Oncology; Allele; Cochrane Library; Subgroup analysis; Gynecology; Cancer; Genetics; Gene; Biology","score_opus":0.041336091263624,"score_gpt":0.3203046275806971,"score_spread":0.2789685363170731,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2986038196","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009119424,0.9933018,0.000015653524,0.0040360796,0.001118338,0.00042746833,0.000103709586,0.000011061483,0.000073967196],"genre_scores_gemma":[0.00074701634,0.983141,0.0000070117358,0.00015178151,0.00025722105,0.000025914696,0.00010250125,0.000024739977,0.015542804],"study_design_codex":"meta_analysis","study_design_gemma":"not_applicable","domain_scores_codex":[0.9951351,0.0018370464,0.0018453815,0.00020355973,0.0006144908,0.00036439285],"domain_scores_gemma":[0.9908155,0.0015031336,0.007047463,0.00024227255,0.00034190484,0.000049681297],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.005507404,0.00033368342,0.0035027484,0.00039521346,0.00017119027,0.0000610977,0.0005530458,0.0014400401,0.00086601026],"category_scores_gemma":[0.0020754195,0.00018201639,0.003328576,0.0005974982,0.00003913531,0.00023774356,0.0001610214,0.0017309388,0.00010885285],"study_design_candidate":"meta_analysis","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00004653362,0.000054908996,0.0020606222,0.0009586445,0.58011156,0.000002963198,0.00046580462,9.789595e-7,0.000021531518,0.000026221482,0.018721616,0.39752862],"study_design_scores_gemma":[0.00039265977,0.00006575331,0.00044569478,0.0004438913,0.3230557,0.000021791968,0.00001506336,0.0000010679909,0.000044026707,0.000030119749,0.6753366,0.00014762579],"about_ca_topic_score_codex":0.00006198224,"about_ca_topic_score_gemma":0.000026303354,"teacher_disagreement_score":0.65661496,"about_ca_system_score_codex":0.0013395214,"about_ca_system_score_gemma":0.00073249394,"threshold_uncertainty_score":0.9998563},"labels":[],"label_agreement":null},{"id":"W2987629825","doi":"10.1002/cbic.201900591","title":"Regulation of Immune Activation by Optical Control of TLR1/2 Heterodimerization","year":2019,"lang":"en","type":"article","venue":"ChemBioChem","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Natural Science Foundation of China","keywords":"Chemistry; Immune system; Cell biology; Toll-like receptor; Stimulation; Receptor; Biophysics; Innate immune system; Biochemistry; Immunology; Biology; Neuroscience","score_opus":0.003067732844086089,"score_gpt":0.1889640748071233,"score_spread":0.1858963419630372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2987629825","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99516684,0.00049115485,0.002312255,0.0001075026,0.00013806106,0.0002336313,0.0000057028665,0.000018834897,0.0015260194],"genre_scores_gemma":[0.9981929,0.000016712653,0.000033661378,0.00001536835,0.0000073138467,0.000006032775,0.00044574062,0.000009195499,0.0012730437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992645,0.000058270758,0.00039299493,0.00012816174,0.000040769108,0.00011533355],"domain_scores_gemma":[0.9992768,0.00008122972,0.00029036414,0.00022637642,0.00011915591,0.000006070332],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018366076,0.00008991675,0.00022903088,0.00006007223,0.000022236243,0.0000027350363,0.00008606532,0.00020395403,0.0003491898],"category_scores_gemma":[0.00008665827,0.000087196444,0.00007227927,0.00010327688,0.00007719391,0.00011999027,0.000017683138,0.00007791236,0.00009507832],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000417638,0.000064156266,0.00038492013,0.00005601177,0.00006599266,1.2345164e-8,0.00010662325,0.000015055419,0.99657696,0.00047959515,0.00019312814,0.0016399188],"study_design_scores_gemma":[0.0015099316,0.00012571694,0.009156409,0.000042883188,0.00001942076,0.0000017700867,0.000044700188,0.0000666593,0.9878946,0.00002932648,0.0010286892,0.00007989192],"about_ca_topic_score_codex":0.0000102148715,"about_ca_topic_score_gemma":4.6750426e-8,"teacher_disagreement_score":0.008771488,"about_ca_system_score_codex":0.000020195937,"about_ca_system_score_gemma":0.000025569618,"threshold_uncertainty_score":0.38233832},"labels":[],"label_agreement":null},{"id":"W2988109514","doi":"10.1146/annurev-pathmechdis-012419-032847","title":"DAMPs, PAMPs, and LAMPs in Immunity and Sterile Inflammation","year":2019,"lang":"en","type":"review","venue":"Annual Review of Pathology Mechanisms of Disease","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":836,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Inflammation; Proinflammatory cytokine; Immunology; Immune system; Pattern recognition receptor; Innate immune system; Context (archaeology); Immunity; Biology; Damp; HMGB1; Clearance; Cell biology; Medicine","score_opus":0.018720691876834405,"score_gpt":0.3022913614956007,"score_spread":0.2835706696187663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2988109514","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024350518,0.99537975,0.000058114736,0.000051003055,0.00022085034,0.0014291831,0.00036727314,0.0000144263895,0.000044367807],"genre_scores_gemma":[0.00057984627,0.99798393,0.00007066266,0.0000490659,0.00001038097,0.00010827277,0.0010174984,0.000028458357,0.00015190466],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99621516,0.0016862103,0.001371222,0.0003939271,0.00006348684,0.00027000322],"domain_scores_gemma":[0.99774337,0.00035929744,0.0011064814,0.0006072096,0.00014308967,0.00004055051],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013800212,0.0004031189,0.002380224,0.00033861527,0.00004614505,0.0000045775632,0.00026705422,0.00047712136,0.000110662346],"category_scores_gemma":[0.00064848526,0.00033647515,0.00027242376,0.00019234445,0.00023961916,0.00019427172,0.00031162618,0.000390768,0.00005577941],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016272848,0.000092895345,0.0000065411373,0.23001948,0.0001477954,0.000027789582,0.0002304057,8.619056e-8,0.0011306689,0.0043776263,0.00009982774,0.7637042],"study_design_scores_gemma":[0.0014648632,0.00077285763,0.00038912985,0.2063673,0.0027979966,0.00023334289,0.00029823364,7.789882e-7,0.0010754656,0.00121071,0.7845605,0.00082879723],"about_ca_topic_score_codex":0.000012325695,"about_ca_topic_score_gemma":0.0000021500355,"teacher_disagreement_score":0.7844607,"about_ca_system_score_codex":0.000024257555,"about_ca_system_score_gemma":0.00027110882,"threshold_uncertainty_score":0.99990875},"labels":[],"label_agreement":null},{"id":"W2992887872","doi":"10.1557/mrc.2019.154","title":"The role of Toll-like receptor signaling in the macrophage response to implanted materials","year":2019,"lang":"en","type":"article","venue":"MRS Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Inflammation; Innate immune system; Cell biology; Macrophage; Receptor; Toll-like receptor; Signal transduction; Immune system; Immunology; Inflammatory response; Pattern recognition receptor; Materials science; Biology; Biochemistry; In vitro","score_opus":0.008844659054824563,"score_gpt":0.2491049616410413,"score_spread":0.24026030258621672,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992887872","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931356,0.002128314,0.000005846551,0.002972201,0.00017627222,0.00049679965,0.000030011683,0.000015086406,0.0010398704],"genre_scores_gemma":[0.9979155,0.00020131793,0.00009846686,0.00015223364,0.000004120976,0.00008677375,0.00008883624,0.000008378698,0.0014443462],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972039,0.0021095986,0.00037646724,0.00009117676,0.00003450244,0.00018436318],"domain_scores_gemma":[0.9966696,0.001679105,0.00012480328,0.0014623441,0.000057680583,0.0000064736887],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0018788766,0.00008443793,0.00014630602,0.00011511907,0.0003067204,0.000026570198,0.0011654068,0.000092700335,0.00025619406],"category_scores_gemma":[0.00018419721,0.000053644657,0.000041743337,0.00026348105,0.000109618435,0.000056942892,0.00022123364,0.00018484307,0.0012436926],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010427852,0.000036273712,0.00015141259,0.0000022378633,0.000024893623,1.205696e-7,0.0026260635,0.000005418745,0.99159247,0.0024317682,0.00040494706,0.0016816056],"study_design_scores_gemma":[0.00035742202,0.00008778919,0.0045896927,0.00003735958,0.000008223233,0.000012048861,0.0035027615,0.000004313627,0.6647731,0.00013084042,0.3264226,0.000073820804],"about_ca_topic_score_codex":0.000104724524,"about_ca_topic_score_gemma":0.00003744766,"teacher_disagreement_score":0.32681936,"about_ca_system_score_codex":0.000026776459,"about_ca_system_score_gemma":0.000050653573,"threshold_uncertainty_score":0.99953395},"labels":[],"label_agreement":null},{"id":"W2992964503","doi":"10.1128/mbio.02802-19","title":"A Porcine <i>Ex Vivo</i> Lung Perfusion Model To Investigate Bacterial Pathogenesis","year":2019,"lang":"en","type":"article","venue":"mBio","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Medical Research Council; Directorate for Biological Sciences; Queen's University; Queen's University Belfast; UK Research and Innovation","keywords":"Klebsiella pneumoniae; Ex vivo; Pathogenesis; In vivo; Lung; Biology; Microbiology; Pneumonia; Immunology; Medicine; Escherichia coli; Gene","score_opus":0.008438440619352387,"score_gpt":0.2123553759575208,"score_spread":0.2039169353381684,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2992964503","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.996074,0.00027046024,0.00018348197,0.00062082446,0.0007850331,0.00032875375,0.00001781821,0.00006626989,0.0016533268],"genre_scores_gemma":[0.9783917,0.00003182193,0.00016947521,0.0006916827,0.000044943998,0.000015632757,0.00013928661,0.00001932009,0.020496158],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99910736,0.00011135879,0.00023445881,0.00024133823,0.000031789452,0.0002737147],"domain_scores_gemma":[0.99951977,0.000027014255,0.000063415304,0.00031194283,0.00005030199,0.000027544966],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00021609297,0.00014536262,0.0002060817,0.00010159938,0.000090299145,0.000016553582,0.00014847174,0.00019058501,0.0015927964],"category_scores_gemma":[0.000040422194,0.00012873787,0.0000670552,0.000106762236,0.00002995471,0.00010830155,0.000108262,0.00010212658,0.004190291],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046210113,0.000022852617,0.0006807278,0.000012475617,0.000018325341,0.0000014112184,0.00047928919,0.000104009865,0.98961025,0.0001680376,0.007023978,0.0014165592],"study_design_scores_gemma":[0.0010908798,0.00015361662,0.0027134412,0.000042772248,0.000025550475,0.000018446724,0.000038184346,0.00072357536,0.9391808,0.00004012103,0.055753283,0.00021935267],"about_ca_topic_score_codex":0.00004633312,"about_ca_topic_score_gemma":0.0000052719697,"teacher_disagreement_score":0.050429456,"about_ca_system_score_codex":0.000036318852,"about_ca_system_score_gemma":0.000071203576,"threshold_uncertainty_score":0.9993199},"labels":[],"label_agreement":null},{"id":"W2995956752","doi":"10.1038/s41598-019-55295-4","title":"Differential remodeling of the electron transport chain is required to support TLR3 and TLR4 signaling and cytokine production in macrophages","year":2019,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Ottawa; Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"TLR3; Cell biology; TLR4; Cytokine; Biology; Innate immune system; Mitochondrion; Immune system; Mitochondrial ROS; Interferon; Inflammation; Proinflammatory cytokine; Signal transduction; Toll-like receptor; Immunology","score_opus":0.007709077414632912,"score_gpt":0.22232006863409723,"score_spread":0.2146109912194643,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2995956752","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99678314,0.00025866716,0.000032566128,0.00028778912,0.0020936136,0.00047742898,0.0000015226977,0.000013034569,0.00005226934],"genre_scores_gemma":[0.9952758,0.000014469722,0.000020720856,0.000014754756,0.000013316114,0.0000067719097,0.000030522606,0.0000078407875,0.004615818],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987129,0.000081183694,0.0004642478,0.0004454079,0.000077027165,0.0002192638],"domain_scores_gemma":[0.99934494,0.000013503862,0.00019153797,0.000370341,0.00006703945,0.000012615316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009690366,0.00010332401,0.00019621114,0.00017197113,0.00013309611,0.000020331985,0.00006519054,0.00009185113,0.0001007836],"category_scores_gemma":[0.000052308173,0.000077819954,0.00004104975,0.00023447568,0.00012666715,0.00012589863,0.000042187425,0.00011733042,0.000006712354],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001251821,0.000019758736,0.0090068765,0.000033027765,0.000012729269,0.0000040130317,0.0015742755,0.000041211166,0.9873539,0.000010822337,0.0001175814,0.0017006202],"study_design_scores_gemma":[0.0002141557,0.00007091993,0.015071525,0.000071655304,0.000016026312,0.00015498487,0.00010247015,0.000019029341,0.9824911,0.00022426144,0.0014764002,0.00008749783],"about_ca_topic_score_codex":0.00004013003,"about_ca_topic_score_gemma":0.000017546334,"teacher_disagreement_score":0.0060646483,"about_ca_system_score_codex":0.0000211291,"about_ca_system_score_gemma":0.000068543064,"threshold_uncertainty_score":0.31734058},"labels":[],"label_agreement":null},{"id":"W2997008105","doi":"10.25011/cim.v42i4.33114","title":"Moderate hyperoxia plays a protective role in lung bronchial epithelial cells","year":2019,"lang":"en","type":"article","venue":"Clinical and investigative medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Shengjing Hospital; National Natural Science Foundation of China","keywords":"Hyperoxia; RELB; Apoptosis; Andrology; Western blot; Tumor necrosis factor alpha; Downregulation and upregulation; Molecular biology; Biology; Lung; Immunology; Medicine; Chemistry; Internal medicine; NFKB1; Biochemistry","score_opus":0.03930180102395223,"score_gpt":0.28335628793811474,"score_spread":0.2440544869141625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997008105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921262,0.001020963,0.00006234934,0.0039749094,0.00075509225,0.0006570431,0.0000059950494,0.000027653507,0.0013697641],"genre_scores_gemma":[0.99680793,0.000098319906,0.00004167525,0.00065225875,0.0001498351,0.00003467616,0.000035031808,0.000011828289,0.0021684237],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980685,0.00062966073,0.000629961,0.00036451107,0.000045146422,0.00026220636],"domain_scores_gemma":[0.99929905,0.00025621953,0.00015803188,0.00017342958,0.00006340523,0.000049883645],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.00088771136,0.0001837675,0.0005334131,0.00010012179,0.00007586332,0.0000059465633,0.00011176635,0.00027676963,0.00031743795],"category_scores_gemma":[0.0005598106,0.00012925534,0.00005247109,0.000127831,0.0040500597,0.00016416202,0.000072832394,0.00063603517,0.00035714684],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010593472,0.000080558864,0.011322561,0.000036990445,0.0000893545,0.000004530991,0.002206398,0.000011550946,0.97537744,0.005559503,0.00074684917,0.0035049203],"study_design_scores_gemma":[0.01678916,0.0036569615,0.17252205,0.0006743864,0.00009791327,0.000030560583,0.0021920926,0.0018074473,0.7451745,0.042537015,0.013902677,0.0006152023],"about_ca_topic_score_codex":0.00023523536,"about_ca_topic_score_gemma":0.000025873396,"teacher_disagreement_score":0.23020291,"about_ca_system_score_codex":0.000020882404,"about_ca_system_score_gemma":0.00008766134,"threshold_uncertainty_score":0.9986603},"labels":[],"label_agreement":null},{"id":"W2997759152","doi":"10.1096/fasebj.22.2_supplement.455","title":"Interferon gamma limits Th1 adhesion to inflamed endothelium: a nitric oxide regulatory feedback mechanism","year":2008,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Cytokine; Immunology; Immune system; Cell biology; Inflammation; Tumor necrosis factor alpha; Intravital microscopy; Nitric oxide; Biology; Chemistry; Endocrinology; In vivo","score_opus":0.018875105488367412,"score_gpt":0.22225489901071782,"score_spread":0.20337979352235042,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2997759152","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99587154,0.0012291614,0.0005892716,0.00076759746,0.00058449537,0.00026199807,0.0000030224103,0.000059904647,0.00063301646],"genre_scores_gemma":[0.98973686,0.00042747153,0.00009401131,0.0005407904,0.00014267162,0.000013589334,0.0000092902055,0.000026995122,0.009008335],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998136,0.0006285597,0.0004937002,0.00018121566,0.00010404809,0.00045650208],"domain_scores_gemma":[0.99897754,0.00018972832,0.0002520768,0.00038799137,0.00013294157,0.000059710626],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000844886,0.00022185841,0.00026903328,0.00029451255,0.00073816924,0.000032215205,0.00046758985,0.00020445598,0.0004719029],"category_scores_gemma":[0.00018188245,0.00014884384,0.00017053577,0.00020900763,0.00011815408,0.0002073498,0.00010074562,0.0006820587,0.00258329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012764698,0.000038269558,0.000100843514,0.0000040145987,0.00010250699,0.000040577856,0.0014707525,0.00001440143,0.9897527,0.00030293898,0.0034469883,0.0034495492],"study_design_scores_gemma":[0.0012216014,0.00033882383,0.009991787,0.000082634135,0.000040480172,0.0039265193,0.00040187646,0.0000048255674,0.97721475,0.00038062292,0.0062068244,0.00018923853],"about_ca_topic_score_codex":0.000018797138,"about_ca_topic_score_gemma":0.0000032792107,"teacher_disagreement_score":0.012537921,"about_ca_system_score_codex":0.00015383845,"about_ca_system_score_gemma":0.00020949308,"threshold_uncertainty_score":0.9981933},"labels":[],"label_agreement":null},{"id":"W2998831801","doi":"10.1155/2020/2704728","title":"CpG‐ODN Induces a Dose‐Dependent Enrichment of Immunological Niches in the Spleen and Lungs of Neonatal Chicks That Correlates with the Protective Immunity against <i>Escherichia coli</i>","year":2020,"lang":"en","type":"article","venue":"Journal of Immunology Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Saskatchewan","funders":"Western Economic Diversification Canada; Natural Sciences and Engineering Research Council of Canada; Alberta Livestock and Meat Agency; Canadian Poultry Research Council","keywords":"CpG Oligodeoxynucleotide; Spleen; CpG site; Immune system; Biology; CD8; Flow cytometry; Immunity; Molecular biology; Immunology; Gene expression; Biochemistry","score_opus":0.03998664114028525,"score_gpt":0.28693389246414397,"score_spread":0.24694725132385872,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W2998831801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9732886,0.019555554,0.000056103476,0.006021555,0.000088858746,0.0007609267,0.0000062703443,0.000006292585,0.00021582111],"genre_scores_gemma":[0.9973777,0.0023234098,0.000032778484,0.00012892923,0.000019472158,0.000053345633,0.0000071701884,0.000012849182,0.000044337812],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99435514,0.003938493,0.00076269195,0.0002097663,0.00027613595,0.00045778014],"domain_scores_gemma":[0.9965817,0.0017880212,0.0007514456,0.00035451984,0.0005027835,0.000021555192],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0043220883,0.00022332899,0.0006394671,0.00028584182,0.00030563917,0.000028579532,0.0010828844,0.0003931811,0.000055430046],"category_scores_gemma":[0.0007180518,0.00011390125,0.00012411208,0.00058630947,0.0019460167,0.00023507143,0.00040415162,0.0032580642,0.000009135316],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012288754,0.0002663847,0.0034893632,0.000043844786,0.0009360857,0.000040781597,0.017883059,0.000014834489,0.95805234,0.00034198293,0.00012979981,0.0065127853],"study_design_scores_gemma":[0.00594599,0.008521554,0.23014279,0.00025891984,0.00009735551,0.00056366785,0.061668817,0.000011726429,0.69046086,0.00028609578,0.0018083451,0.00023385977],"about_ca_topic_score_codex":0.00016779981,"about_ca_topic_score_gemma":0.000020599398,"teacher_disagreement_score":0.26759145,"about_ca_system_score_codex":0.00005557789,"about_ca_system_score_gemma":0.00038590468,"threshold_uncertainty_score":0.99904144},"labels":[],"label_agreement":null},{"id":"W3000635792","doi":"10.1007/s13238-019-00687-5","title":"Activation of the pattern recognition receptor NOD1 augments colon cancer metastasis","year":2020,"lang":"en","type":"article","venue":"Protein & Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":78,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Health Sciences North; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research","keywords":"NOD1; Cancer research; Colorectal cancer; Metastasis; Biology; Gene knockdown; MAPK/ERK pathway; Signal transduction; Cancer; Immunology; Cell biology; Cell culture; Immune system; NOD2; Innate immune system; Genetics","score_opus":0.025003431007342748,"score_gpt":0.2243056672972821,"score_spread":0.19930223628993934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3000635792","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957159,0.00046061477,0.0002659619,0.0023546861,0.00020866044,0.000685903,0.00003544692,0.000023239065,0.00024957926],"genre_scores_gemma":[0.9985703,0.00004279344,0.000039456656,0.00022930479,0.000023708966,0.0001419397,0.00011837684,0.000010374809,0.0008237209],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992117,0.00026732762,0.00021789265,0.0001394148,0.00003545107,0.00012818424],"domain_scores_gemma":[0.9995497,0.00002338197,0.00022509952,0.000121434845,0.00007305292,0.000007367074],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012311486,0.00009143985,0.00012682054,0.000026028893,0.00009013734,0.000006204025,0.0001262788,0.00010705632,0.0014267295],"category_scores_gemma":[0.00005955391,0.00006894553,0.00006607512,0.0001238147,0.00004163878,0.000099809986,0.00005036682,0.00015158553,0.00047121558],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022503317,0.00003827061,0.00022378762,0.000055545694,0.00004912544,5.4814482e-8,0.0005031456,0.000002807356,0.9304309,0.0000010966044,0.0009441536,0.067526065],"study_design_scores_gemma":[0.0006584316,0.00009539495,0.00083866884,0.00006656934,0.000030381787,1.830529e-7,0.00008090372,0.000005919558,0.9733542,0.000010993361,0.024781568,0.00007674112],"about_ca_topic_score_codex":0.00016968143,"about_ca_topic_score_gemma":0.0000031160484,"teacher_disagreement_score":0.067449324,"about_ca_system_score_codex":0.00003386784,"about_ca_system_score_gemma":0.000046364887,"threshold_uncertainty_score":0.9994861},"labels":[],"label_agreement":null},{"id":"W3000881200","doi":"10.1101/2020.01.22.915017","title":"Phosphatidylinositol-4-kinase IIα licenses phagosomes for TLR4 signaling and MHC-II presentation in dendritic cells","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Child Health and Human Development; Canadian Institutes of Health Research; National Institutes of Health; Children's Hospital of Philadelphia","keywords":"Phagosome; Cell biology; Signal transducing adaptor protein; TLR4; Proinflammatory cytokine; Phosphatidylinositol; Dendritic cell; Biology; Kinase; Chemistry; Signal transduction; Immune system; Phagocytosis; Inflammation; Immunology","score_opus":0.014286304710701426,"score_gpt":0.23072932374720534,"score_spread":0.21644301903650393,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3000881200","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98572534,0.009900057,0.00061971776,0.00061862054,0.0013765565,0.0014251026,0.00014309693,0.00018851431,0.000002973533],"genre_scores_gemma":[0.9975059,0.0007154596,0.00095103914,0.00017631115,0.0001735289,0.00036533538,0.000005816343,0.00008068877,0.000025937665],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975613,0.0002967489,0.0007134632,0.00081750355,0.000080669524,0.00053031894],"domain_scores_gemma":[0.9984673,0.0003364894,0.00040305336,0.0004687331,0.0002595116,0.00006488463],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00043328034,0.00047996364,0.00064138224,0.00031364724,0.000301855,0.00011675334,0.00031067888,0.0007234654,0.00005152457],"category_scores_gemma":[0.00032336253,0.0005375447,0.00013903905,0.00025064312,0.00014110534,0.00024294585,0.0003576453,0.0006172139,0.000060141916],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037029738,0.000112928305,0.0009845201,0.00056396594,0.00017651808,0.000021125783,0.00014070717,0.000048430487,0.99679905,0.00039688626,0.0003718238,0.000013773787],"study_design_scores_gemma":[0.0017006968,0.0001515543,0.009316332,0.00044472385,0.0001501202,5.2875755e-8,0.000028179235,0.00018451206,0.9817118,0.000007702912,0.0057615046,0.0005427979],"about_ca_topic_score_codex":0.00007962233,"about_ca_topic_score_gemma":0.0000037951424,"teacher_disagreement_score":0.015087199,"about_ca_system_score_codex":0.00012113468,"about_ca_system_score_gemma":0.00032920355,"threshold_uncertainty_score":0.9997076},"labels":[],"label_agreement":null},{"id":"W3001385246","doi":"10.1007/s10585-020-10018-2","title":"Toll-like receptors: exploring their potential connection with post-operative infectious complications and cancer recurrence","year":2020,"lang":"en","type":"review","venue":"Clinical & Experimental Metastasis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; Ottawa Hospital; McGill University; McGill University Health Centre; Montreal General Hospital","funders":"","keywords":"Cancer; Metastasis; Innate immune system; Surgical oncology; Immunology; Toll-like receptor; Medicine; Immune system; Receptor; Cancer cell; Cancer research; Biology; Internal medicine","score_opus":0.12418506306907891,"score_gpt":0.4040793169401484,"score_spread":0.27989425387106953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3001385246","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0057856115,0.98981863,0.000119502205,0.00017453067,0.002594344,0.0011527076,0.00013198225,0.000116855656,0.000105821266],"genre_scores_gemma":[0.0061409264,0.9913371,0.00009901934,0.00016192898,0.00013548869,0.0013334706,0.00064725976,0.000055908105,0.00008885145],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963013,0.0014276654,0.0010930487,0.00079743547,0.000061354454,0.00031921716],"domain_scores_gemma":[0.9983082,0.0005466025,0.00057165965,0.0003643146,0.00013275328,0.00007651699],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003402027,0.0005460583,0.0016366559,0.00014364092,0.00042253354,0.000069265894,0.00023700263,0.00038151306,0.00036342267],"category_scores_gemma":[0.00012490129,0.0003927916,0.00043007417,0.0002625293,0.0004653361,0.00032687892,0.00020689583,0.0008317672,0.00029648285],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022364408,0.00023578841,0.000012063916,0.0002787848,0.0013257386,0.0000053574217,0.0005185689,5.6691357e-7,0.0010580798,0.000107585176,0.00047111083,0.9957627],"study_design_scores_gemma":[0.00085801224,0.0012237082,0.000033653454,0.0020343473,0.0006938746,0.0002491903,0.0010727429,0.0000014002553,0.004032532,0.000003366798,0.9893004,0.0004968301],"about_ca_topic_score_codex":0.000095146694,"about_ca_topic_score_gemma":0.000011274017,"teacher_disagreement_score":0.9952659,"about_ca_system_score_codex":0.00014138666,"about_ca_system_score_gemma":0.00025003398,"threshold_uncertainty_score":0.9998524},"labels":[],"label_agreement":null},{"id":"W3003044105","doi":"10.1016/s2213-2600(19)30368-6","title":"Sepsis-associated acute respiratory distress syndrome in individuals of European ancestry: a genome-wide association study","year":2020,"lang":"en","type":"article","venue":"The Lancet Respiratory Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":73,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital","funders":"European Social Fund; National Heart, Lung, and Blood Institute; Center for Sepsis Control and Care; European Regional Development Fund; Instituto de Salud Carlos III; Novo Nordisk; Ministerie van Onderwijs, Cultuur en Wetenschap; National Institutes of Health; Bayer HealthCare; AstraZeneca; Pfizer","keywords":"Medicine; Genome-wide association study; Sepsis; Acute respiratory distress; Respiratory distress; MEDLINE; Intensive care medicine; Association (psychology); Genetic association; Pediatrics; Internal medicine; Single-nucleotide polymorphism; Genetics; Genotype; Gene; Surgery; Lung","score_opus":0.05547419262797275,"score_gpt":0.29532003940472573,"score_spread":0.23984584677675297,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3003044105","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98964363,0.0026854556,0.000006029652,0.005211904,0.00020821432,0.00061329774,0.000056325098,0.000083221574,0.0014919479],"genre_scores_gemma":[0.9955203,0.00006389243,0.000001419016,0.0039367117,0.00016795154,0.000030601037,0.00008457107,0.00002603705,0.00016853692],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99515855,0.0030616417,0.00085786555,0.00030581013,0.00019057633,0.0004255491],"domain_scores_gemma":[0.9979685,0.0006696405,0.0007545096,0.00046172875,0.00011118299,0.000034413864],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003817852,0.0002312012,0.0008059494,0.00013917155,0.0001381448,0.000010526719,0.0006184337,0.00016020398,0.00016409965],"category_scores_gemma":[0.0021595892,0.00016267746,0.00006448257,0.00060124043,0.00018383999,0.00012541816,0.00014887881,0.00063513266,0.00015186872],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004550102,0.00023109639,0.87351257,0.000048977243,0.00090523396,0.000099105746,0.0086574545,0.000024203642,0.10258639,0.000039145132,0.012863587,0.00057721505],"study_design_scores_gemma":[0.005106687,0.0013052737,0.95357233,0.00012019155,0.00016152096,0.0000017731815,0.0011073012,9.446413e-7,0.0019344585,0.000015026702,0.036511656,0.00016282128],"about_ca_topic_score_codex":0.000035620338,"about_ca_topic_score_gemma":0.0000300145,"teacher_disagreement_score":0.10065193,"about_ca_system_score_codex":0.00013395365,"about_ca_system_score_gemma":0.000071421644,"threshold_uncertainty_score":0.66337943},"labels":[],"label_agreement":null},{"id":"W3004519811","doi":"10.1101/2020.02.08.940023","title":"ABCF1 regulates dsDNA-induced immune responses in human airway epithelial cells","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Waterloo; McMaster University","funders":"Canadian Institutes of Health Research; British Columbia Lung Association","keywords":"Biology; Innate immune system; Respiratory epithelium; Cell biology; Gene knockdown; CXCL10; Immune system; Transcriptome; RIG-I; Epithelium; Immunology; Gene expression; Gene; Chemokine; Genetics","score_opus":0.015716261654899963,"score_gpt":0.22806530037542813,"score_spread":0.21234903872052818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3004519811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9926473,0.002681224,0.00005508973,0.00066033134,0.0023014748,0.001013418,0.00015235718,0.0004683306,0.000020467132],"genre_scores_gemma":[0.99870175,0.00027031326,0.00017287675,0.00013697469,0.00024302024,0.00019860528,0.000004401184,0.00015829447,0.0001137744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99522656,0.00119526,0.001321814,0.0012178939,0.00014378638,0.0008946983],"domain_scores_gemma":[0.99707127,0.0002352967,0.00074173184,0.0015793863,0.00028612922,0.00008616703],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012402761,0.0008311268,0.0011540322,0.0006848011,0.00033775278,0.0001373326,0.0009788822,0.0016485975,0.00029958648],"category_scores_gemma":[0.00042441505,0.0008997317,0.00033675402,0.0005308135,0.00024120188,0.00021940631,0.0008005049,0.0019272126,0.00094331155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073894416,0.00015090108,0.00035462217,0.00018536848,0.0002536268,0.000084552186,0.000077776385,0.000010997764,0.9973699,0.0004581782,0.0003089913,0.000006153971],"study_design_scores_gemma":[0.0015311404,0.00018761157,0.043135427,0.0004046603,0.0000930373,6.522037e-8,0.000010816059,0.000015660313,0.94665056,0.00000821675,0.0070671705,0.0008956443],"about_ca_topic_score_codex":0.00026862606,"about_ca_topic_score_gemma":0.0000051140682,"teacher_disagreement_score":0.05071934,"about_ca_system_score_codex":0.0003258923,"about_ca_system_score_gemma":0.00071559555,"threshold_uncertainty_score":0.9998346},"labels":[],"label_agreement":null},{"id":"W3004546115","doi":"10.1016/j.isci.2020.100891","title":"Toll-Interacting Protein Regulates Immune Cell Infiltration and Promotes Colitis-Associated Cancer","year":2020,"lang":"en","type":"article","venue":"iScience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Novartis Foundation; Université de Lausanne; AbbVie","keywords":"FOXP3; Colitis; Cancer research; CD8; Azoxymethane; Immune system; Immunology; Biology; Cancer; Colorectal cancer","score_opus":0.01282196432228782,"score_gpt":0.2366854686636927,"score_spread":0.22386350434140487,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3004546115","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99505776,0.0019303588,0.00004179012,0.0018946588,0.0001355754,0.00029039037,0.000004354968,0.00005754474,0.0005875403],"genre_scores_gemma":[0.99850446,0.00003295931,0.000044085435,0.00010045251,0.000013954011,0.000030834886,0.000016325966,0.00000535943,0.0012515498],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992259,0.00012608884,0.00021329685,0.00019515128,0.00003435209,0.00020521284],"domain_scores_gemma":[0.9996219,0.000068041314,0.0001541719,0.00008069053,0.00005877556,0.00001638942],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022503313,0.00008871859,0.00012964547,0.00003223424,0.00024234303,0.000046578523,0.00011590396,0.00008396062,0.00014652076],"category_scores_gemma":[0.0003079882,0.00007923205,0.0000234275,0.00015819386,0.00012306066,0.00033917348,0.00005649775,0.00013980486,0.000064402666],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007102876,0.000015372148,0.00040280804,0.000015037073,0.0000085582315,0.0000010586685,0.0019035782,0.000005564858,0.9932667,0.0000847328,0.000106226944,0.004119341],"study_design_scores_gemma":[0.00037399493,0.0001339446,0.014700514,0.00007590754,0.0000072763314,0.000005654176,0.00030695504,0.00033599802,0.98182464,0.000033901353,0.0020956737,0.00010553805],"about_ca_topic_score_codex":0.00018880548,"about_ca_topic_score_gemma":0.00001947035,"teacher_disagreement_score":0.014297706,"about_ca_system_score_codex":0.000026085208,"about_ca_system_score_gemma":0.00007380512,"threshold_uncertainty_score":0.32309893},"labels":[],"label_agreement":null},{"id":"W3006135268","doi":"10.1097/cce.0000000000000083","title":"Importance of Endotoxin Clearance in Endotoxemic Septic Shock: An Analysis From the Evaluating Use of PolymyxinB Hemoperfusion in a Randomized Controlled Trial of Adults Treated for Endotoxemic Septic Shock (EUPHRATES) Trial","year":2020,"lang":"en","type":"article","venue":"Critical Care Explorations","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Tornado Spectral Systems (Canada)","funders":"","keywords":"Hemoperfusion; Septic shock; Medicine; Polymyxin B; Randomized controlled trial; Polymyxin; Mechanical ventilation; Shock (circulatory); Internal medicine; Anesthesia; Sepsis; Antibiotics; Biology; Hemodialysis; Microbiology","score_opus":0.0505312521980987,"score_gpt":0.3290081359144123,"score_spread":0.27847688371631363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3006135268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898221,0.001313726,0.00091725116,0.00038735138,0.00017208736,0.0071592648,0.00018611901,0.000024472054,0.00001763447],"genre_scores_gemma":[0.9968694,0.0000743049,0.00024707388,0.00007582659,0.00005880971,0.0018583576,0.00078156067,0.000022279266,0.000012391642],"study_design_codex":"randomized_trial","study_design_gemma":"randomized_trial","domain_scores_codex":[0.99387914,0.002903046,0.0023094167,0.00043331922,0.00015494379,0.00032012173],"domain_scores_gemma":[0.9897033,0.008763574,0.00053586165,0.0004383495,0.00052073126,0.00003818499],"candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.0012279934,0.00026944737,0.0021728592,0.0003050309,0.00010412176,0.00002195358,0.0002667023,0.00025476812,0.00015927484],"category_scores_gemma":[0.015581928,0.00020302724,0.0007557489,0.00076192763,0.00036243247,0.0003768088,0.00005048813,0.00029672863,0.0000042788306],"study_design_candidate":"randomized_trial","study_design_consensus":"randomized_trial","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.6741269,0.00023218305,0.00028743842,0.000040449046,0.00025070706,0.0000014109996,0.005338827,0.00060969265,0.31869677,0.00020162373,0.00000555522,0.0002084044],"study_design_scores_gemma":[0.81696826,0.0017949566,0.00021398364,0.00015068821,0.0012414526,6.8727127e-7,0.0047407025,0.018672938,0.15595183,0.00008615973,0.00000352501,0.00017480718],"about_ca_topic_score_codex":0.0004628238,"about_ca_topic_score_gemma":0.00061967154,"teacher_disagreement_score":0.16274495,"about_ca_system_score_codex":0.00006867721,"about_ca_system_score_gemma":0.00028385507,"threshold_uncertainty_score":0.99271023},"labels":[],"label_agreement":null},{"id":"W3007043517","doi":"10.1016/j.molmed.2019.11.006","title":"Bacterial Peptidoglycan as a Driver of Chronic Brain Inflammation","year":2020,"lang":"en","type":"review","venue":"Trends in Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":87,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Allergy and Infectious Diseases; Stichting Zabawas; ASCRS Research Foundation","keywords":"Neuroinflammation; Inflammation; Peptidoglycan; Innate immune system; Immune system; Pattern recognition receptor; Biology; Proinflammatory cytokine; Immunology; Receptor; Experimental autoimmune encephalomyelitis; Cell biology; Bacteria","score_opus":0.016567362609482297,"score_gpt":0.30862955260136127,"score_spread":0.292062189991879,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007043517","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005296627,0.9957038,0.00006569615,0.0007787541,0.0006211331,0.0003458072,0.000009642073,0.0000365595,0.0019089122],"genre_scores_gemma":[0.0006166182,0.9945248,0.000019061814,0.00004583378,0.00026319208,0.00006538554,0.00275686,0.000052511983,0.0016557524],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99730295,0.000816613,0.0011201426,0.0003702262,0.00009342445,0.0002966541],"domain_scores_gemma":[0.99871033,0.00016565062,0.0006289908,0.0004248839,0.000043729397,0.000026385222],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00040307295,0.0004081443,0.0018144019,0.0008331426,0.000030834843,0.000004344791,0.0003414484,0.00060577557,0.0030066627],"category_scores_gemma":[0.00035439403,0.00032764176,0.00029480457,0.00068608444,0.00026515505,0.00005846402,0.00009850134,0.0005717587,0.0003429823],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008497033,0.000018873752,2.0756647e-7,0.0015233521,0.00024132538,0.00007704696,0.00040859566,5.4453034e-7,0.086781666,0.00048729713,0.0011362699,0.9092398],"study_design_scores_gemma":[0.0016790639,0.00066141074,0.000010617793,0.0069351997,0.00041511666,0.00011094091,0.000020834068,0.0000016214735,0.004953275,0.000023760767,0.98494196,0.0002461788],"about_ca_topic_score_codex":0.000080370686,"about_ca_topic_score_gemma":0.000017872599,"teacher_disagreement_score":0.9838057,"about_ca_system_score_codex":0.00021653374,"about_ca_system_score_gemma":0.00033808922,"threshold_uncertainty_score":0.99991757},"labels":[],"label_agreement":null},{"id":"W3007534389","doi":"10.1093/jcag/gwz047.234","title":"A235 THE INFLUENCE OF IL10 ON COLITIS DEVELOPMENT IN NOD2 DEFICIENT MICE","year":2020,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Mount Sinai Hospital; Western University","funders":"","keywords":"NOD2; Interleukin 10; Colitis; Inflammation; Feces; Biology; Immunology; Medicine; Cytokine; Internal medicine; Crohn's disease; Disease; Microbiology","score_opus":0.006898516740495641,"score_gpt":0.19261038309059775,"score_spread":0.18571186635010212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3007534389","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9800688,0.000032411288,0.0000050820768,0.01945585,0.0002418387,0.00010339232,0.0000093124445,0.0000010843668,0.00008225094],"genre_scores_gemma":[0.9974252,0.000012330674,0.000017699516,0.002426485,0.000013360993,0.0000017585006,0.0000024634269,0.000003982312,0.000096733114],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99844766,0.0005806203,0.0006053373,0.000061657025,0.00008193405,0.00022276955],"domain_scores_gemma":[0.998454,0.00014329804,0.0010472051,0.0000823504,0.00024451537,0.000028682793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00088416116,0.00007217266,0.00023955225,0.00014032616,0.00008165933,0.0000044886897,0.00033058377,0.00011492596,0.000032329615],"category_scores_gemma":[0.00069237227,0.000049047365,0.0000872708,0.00012092382,0.000070083086,0.000044997658,0.000028383023,0.00032478556,0.000013883424],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003724654,0.00013871063,0.8140752,0.000039929608,0.0006270092,0.000010283403,0.008120116,0.008631543,0.1534211,0.0008649827,0.009579524,0.0007669539],"study_design_scores_gemma":[0.001280892,0.000522864,0.9661819,0.000059630525,0.000024475381,0.000027119166,0.00017343766,0.0000057933853,0.018038113,0.000017943235,0.013633432,0.000034434295],"about_ca_topic_score_codex":0.0013646649,"about_ca_topic_score_gemma":0.057026338,"teacher_disagreement_score":0.15210667,"about_ca_system_score_codex":0.00049642764,"about_ca_system_score_gemma":0.00045091746,"threshold_uncertainty_score":0.96018046},"labels":[],"label_agreement":null},{"id":"W3008129052","doi":"10.1074/jbc.ra119.011633","title":"Tristetraprolin regulates necroptosis during tonic Toll-like receptor 4 (TLR4) signaling in murine macrophages","year":2020,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; University of Ottawa","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"TLR4; Tristetraprolin; Necroptosis; Toll-like receptor; Receptor; Tonic (physiology); Chemistry; Cell biology; Toll; Neuroscience; Immunology; Biology; Innate immune system; Biochemistry; Untranslated region; Messenger RNA; Gene; Apoptosis; Programmed cell death","score_opus":0.015550217212892785,"score_gpt":0.22291752584565847,"score_spread":0.20736730863276567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3008129052","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931277,0.0055317283,0.000008926333,0.00097108557,0.00014361517,0.00007078194,0.0000042244196,0.00002461256,0.00011730417],"genre_scores_gemma":[0.99866074,0.0006344054,0.00013026917,0.00010865426,0.00014706809,0.0000031244615,0.00002052891,0.000009465622,0.00028576684],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985241,0.0001512782,0.00078249665,0.00019768717,0.000050113365,0.00029428612],"domain_scores_gemma":[0.9992095,0.00015220068,0.00040254905,0.000107450214,0.00007925709,0.00004900936],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033033424,0.00018169086,0.000456719,0.00004772675,0.000077138466,0.000017752305,0.00028116745,0.00038413008,0.0013848495],"category_scores_gemma":[0.00038913303,0.00013271076,0.00020791477,0.00018033964,0.000111636575,0.00009131618,0.00007627084,0.00062425085,0.000055199085],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018096584,0.00006944056,0.0017699397,0.00005810273,0.000079290854,0.00005667455,0.00014046999,0.00004100628,0.99501824,0.0000015115446,0.00019712237,0.0007585531],"study_design_scores_gemma":[0.0017752992,0.00025101416,0.0039383676,0.00008447698,0.000015719497,0.00020387318,0.0002484962,0.000003940286,0.98981416,0.00001617761,0.0034928774,0.00015556761],"about_ca_topic_score_codex":0.000002041235,"about_ca_topic_score_gemma":8.053007e-8,"teacher_disagreement_score":0.0055329953,"about_ca_system_score_codex":0.00006731349,"about_ca_system_score_gemma":0.000052140735,"threshold_uncertainty_score":0.999528},"labels":[],"label_agreement":null},{"id":"W3009684863","doi":"10.1101/2020.03.05.978767","title":"The antitumoral activity of TLR7 ligands is corrupted by the microenvironment of pancreatic tumors","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Innovation Cluster (Canada)","funders":"Région Occitanie Pyrénées-Méditerranée","keywords":"Pancreatic cancer; Cancer research; Receptor; Toll-like receptor; In vivo; Carcinogenesis; TLR7; Tumor microenvironment; Pancreatic tumor; Cancer; Immune system; Innate immune system; Biology; Immunology; Medicine; Internal medicine","score_opus":0.009906391642379176,"score_gpt":0.202499815771044,"score_spread":0.19259342412866484,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3009684863","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99104434,0.00614562,0.00013743038,0.001037139,0.00066813885,0.0006404941,0.00026928392,0.000051378585,0.0000061909736],"genre_scores_gemma":[0.9984442,0.0012260997,0.000032371798,0.00009507906,0.000038081584,0.0000663406,0.0000015503956,0.00004428406,0.000051992814],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99804896,0.00036188768,0.0006547178,0.00044252464,0.00011911724,0.00037279227],"domain_scores_gemma":[0.9975403,0.00019268553,0.0009775915,0.0011167551,0.00014100413,0.000031688734],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062763516,0.0003798271,0.0006539977,0.00007030192,0.00026828577,0.000036425867,0.00073415064,0.00038020144,0.000060739785],"category_scores_gemma":[0.00018894745,0.00026289644,0.00022203577,0.00021415485,0.00062072696,0.00006751482,0.0004856729,0.0007427635,0.00007175537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034716344,0.000093962655,0.0020701583,0.00015687967,0.0004299165,0.000002803323,0.000051092877,0.0000023986236,0.99463236,0.000099613106,0.0021036093,0.000010032088],"study_design_scores_gemma":[0.00046374134,0.000112466216,0.06160988,0.00019675864,0.00017487485,5.340526e-8,0.0000125659935,0.000025512232,0.93079895,0.0000012784504,0.0063712606,0.0002326574],"about_ca_topic_score_codex":0.000120919685,"about_ca_topic_score_gemma":7.813162e-7,"teacher_disagreement_score":0.063833416,"about_ca_system_score_codex":0.00008890371,"about_ca_system_score_gemma":0.00029773408,"threshold_uncertainty_score":0.9999823},"labels":[],"label_agreement":null},{"id":"W3012654932","doi":"10.4049/jimmunol.2000022","title":"Neutrophils Recirculate through Lymph Nodes to Survey Tissues for Pathogens","year":2020,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"Lymph; Lymph node; High endothelial venules; Lymph node stromal cell; Lymphatic system; Population; Immunology; Biology; Immune system; Medicine; Cell biology; Pathology","score_opus":0.041093596574217954,"score_gpt":0.2758119614755528,"score_spread":0.23471836490133485,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012654932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9748398,0.009853465,0.0044880714,0.009431032,0.00095440506,0.00026809718,0.00002506971,0.000021972533,0.00011809194],"genre_scores_gemma":[0.99686944,0.0011349053,0.00026738542,0.0013196105,0.00011467757,0.0000059155273,0.00002578328,0.000022652985,0.00023961742],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978428,0.001059114,0.0006201622,0.00011769398,0.00003755876,0.0003227029],"domain_scores_gemma":[0.9982433,0.00074698916,0.0004115653,0.00024028962,0.00033848092,0.000019408211],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011389911,0.00016069366,0.00043172002,0.00007343421,0.00020533217,0.000012971421,0.0005259438,0.00019217501,0.00012592683],"category_scores_gemma":[0.00086341554,0.00010678922,0.00014584955,0.00018234512,0.00014600415,0.00014340229,0.00009150114,0.0002670289,0.00032755733],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004887584,0.000031328706,0.0002592192,0.000008149715,0.0004533059,0.000004992199,0.0032132033,0.00012576817,0.98232883,0.00030782857,0.0025063741,0.0058734016],"study_design_scores_gemma":[0.004963295,0.00252886,0.13283622,0.00008552679,0.0003072972,0.0013590774,0.0015056818,0.000015068602,0.6536474,0.0010373015,0.20126386,0.0004503671],"about_ca_topic_score_codex":0.000062912135,"about_ca_topic_score_gemma":0.0000033362062,"teacher_disagreement_score":0.3286814,"about_ca_system_score_codex":0.00003803998,"about_ca_system_score_gemma":0.00010115782,"threshold_uncertainty_score":0.43547383},"labels":[],"label_agreement":null},{"id":"W3012861332","doi":"10.1073/pnas.1920193117","title":"15-Epi-LXA <sub>4</sub> and 17-epi-RvD1 restore TLR9-mediated impaired neutrophil phagocytosis and accelerate resolution of lung inflammation","year":2020,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":112,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research; Canadian HIV Trials Network, Canadian Institutes of Health Research; Government of Canada; Yale University","keywords":"Phagocytosis; Inflammation; Apoptosis; Neutrophil extracellular traps; Biology; Granulocyte; Immunology; Receptor; Innate immune system; Microbiology; Cell biology; Immune system; Biochemistry","score_opus":0.0313649025231726,"score_gpt":0.25766139822519,"score_spread":0.22629649570201743,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3012861332","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922178,0.001251478,0.000001473047,0.0059943185,0.000022813652,0.00025764212,0.000015543643,0.000018432323,0.00022052147],"genre_scores_gemma":[0.99916726,0.0005416155,0.000067697234,0.00015076072,0.000040604085,0.000009954968,0.0000035289645,0.000004840426,0.000013724135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988099,0.00004144551,0.00050994096,0.00024222219,0.00023158989,0.00016492432],"domain_scores_gemma":[0.99879974,0.0001721049,0.00069014996,0.000011914069,0.00030325056,0.000022863263],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009958609,0.00012442129,0.00023943406,0.00019236241,0.0002503893,0.00001854885,0.00029513985,0.00019511872,0.000007820907],"category_scores_gemma":[0.00084868347,0.000093447394,0.000053731103,0.0005506051,0.0008965501,0.0006749697,0.00015260682,0.00020225528,0.0000020475948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026202956,0.0000134892325,0.0026723847,0.00010975244,0.00003787339,8.452503e-9,0.0006535722,0.000025648687,0.9919388,0.0025071797,0.0006473311,0.0011319101],"study_design_scores_gemma":[0.00052433077,0.0001260468,0.104379565,0.00011433211,0.00002992871,0.000008436563,0.00015108223,0.0011041734,0.892089,0.0012212469,0.00016862311,0.00008324223],"about_ca_topic_score_codex":0.00000769616,"about_ca_topic_score_gemma":1.4095899e-7,"teacher_disagreement_score":0.101707175,"about_ca_system_score_codex":0.000026252708,"about_ca_system_score_gemma":0.000047735943,"threshold_uncertainty_score":0.38106743},"labels":[],"label_agreement":null},{"id":"W3014053429","doi":"10.1038/s41598-020-61683-y","title":"Mucosal delivery of CpG-ODN mimicking bacterial DNA via the intrapulmonary route induces systemic antimicrobial immune responses in neonatal chicks","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Saskatchewan","funders":"Western Economic Diversification Canada; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Chicken Farmers of Saskatchewan; Alberta Livestock and Meat Agency; Government of Canada; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"CpG Oligodeoxynucleotide; Cytokine; CpG site; Immune system; Immunology; Tumor necrosis factor alpha; Lipopolysaccharide; Immunity; Interleukin 10; Innate immune system; Biology; Lung; Medicine; Andrology; Gene expression; Internal medicine; Gene; DNA methylation","score_opus":0.011823734274488693,"score_gpt":0.21348691713518478,"score_spread":0.2016631828606961,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3014053429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897974,0.0015234944,0.000060953666,0.00054130354,0.0074749016,0.00046289404,0.000014690531,0.000055064647,0.00006927779],"genre_scores_gemma":[0.99915874,0.00002596331,0.000017631439,0.000049566854,0.00008802249,0.000019955218,0.0003126677,0.000019108442,0.00030832243],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99695414,0.00067613635,0.0012365711,0.0005944635,0.00012470812,0.00041398848],"domain_scores_gemma":[0.99835145,0.00017313541,0.0007041713,0.00060717086,0.00013775066,0.000026303704],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018944136,0.00023095561,0.0004430734,0.00025855907,0.00035944302,0.000095558025,0.00037994742,0.0002637694,0.0002029068],"category_scores_gemma":[0.00030781823,0.00018077335,0.00017469595,0.00051993906,0.00058543216,0.00036656886,0.00025472732,0.00039056042,0.000075696385],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013102803,0.00003536455,0.0010338122,0.00005414862,0.00006674487,0.0002244165,0.0029098773,0.000017880624,0.9901295,0.000017454096,0.00080086105,0.0033996615],"study_design_scores_gemma":[0.000544837,0.00007818284,0.0065937424,0.00017807074,0.000034982157,0.001880507,0.0005533049,0.000021789814,0.98373234,0.00007228927,0.006095773,0.00021417499],"about_ca_topic_score_codex":0.0001760333,"about_ca_topic_score_gemma":0.000018804745,"teacher_disagreement_score":0.0093613425,"about_ca_system_score_codex":0.000054062028,"about_ca_system_score_gemma":0.00041016622,"threshold_uncertainty_score":0.7371723},"labels":[],"label_agreement":null},{"id":"W3016975310","doi":"10.1096/fasebj.2020.34.s1.04263","title":"Interplay between the Glucocorticoid Receptor and Inflammatory Signaling leads to Enhanced TLR2 Expression in Pulmonary Epithelial Cells","year":2020,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Chromatin immunoprecipitation; TLR2; A549 cell; Glucocorticoid receptor; Transcription factor; Receptor; Repressor; Biology; Molecular biology; Innate immune system; Chemistry; Cell biology; Promoter; Cancer research; Glucocorticoid; Gene expression; Apoptosis; Immunology; Internal medicine; Gene; Medicine","score_opus":0.011031694295457401,"score_gpt":0.23995961589653617,"score_spread":0.22892792160107878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3016975310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953723,0.0006609622,0.0011817606,0.0019999421,0.00037698733,0.00028208928,0.0000059725567,0.000016416217,0.00010356368],"genre_scores_gemma":[0.99889904,0.00011588815,0.00003977079,0.0004885011,0.00022639884,0.000009190107,0.000007923228,0.000014153508,0.00019914912],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99842346,0.000650135,0.00043824041,0.00015319153,0.00005993336,0.00027504374],"domain_scores_gemma":[0.9992431,0.00034575828,0.00017956873,0.0001548936,0.000037154914,0.000039526498],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007365037,0.00014573173,0.00021004416,0.000073301155,0.0002780096,0.00004530306,0.0003240788,0.00012061236,0.00026487032],"category_scores_gemma":[0.00011958759,0.00008320702,0.000067958674,0.00011687444,0.000096512464,0.00015086186,0.0001441019,0.000717974,0.0005285586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007991284,0.000008594811,0.0009968169,0.000008474673,0.000028146687,0.000005793249,0.003987424,0.00012377648,0.9861921,0.000007041874,0.00022745926,0.0076152217],"study_design_scores_gemma":[0.00051810365,0.0001575811,0.0024439115,0.00010548122,0.000018123143,0.000038643513,0.0009050127,0.000010682469,0.9924573,0.000026731623,0.00320509,0.00011335352],"about_ca_topic_score_codex":0.0000037098175,"about_ca_topic_score_gemma":7.769858e-7,"teacher_disagreement_score":0.007501868,"about_ca_system_score_codex":0.000034035027,"about_ca_system_score_gemma":0.000061146566,"threshold_uncertainty_score":0.67937285},"labels":[],"label_agreement":null},{"id":"W3021395869","doi":"10.1101/2020.05.08.084723","title":"Xela DS2 and Xela VS2: two novel skin epithelial-like cell lines from adult African clawed frog ( <i>Xenopus laevis</i> ) and their response to an extracellular viral dsRNA analogue","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo","funders":"Natural Sciences and Engineering Research Council of Canada; University of Waterloo","keywords":"Xenopus; Biology; Cell biology; Amphibian; Extracellular; Cell culture; African clawed frog; Epithelium; Frog Skin; Syncytium; Immunology; Gene; Genetics; Chemistry; Ecology","score_opus":0.009957871363670696,"score_gpt":0.2057918890109039,"score_spread":0.1958340176472332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021395869","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9854717,0.007669655,0.001387277,0.0010825682,0.0012302818,0.0010512797,0.0017523194,0.0003492196,0.0000056733593],"genre_scores_gemma":[0.99587566,0.00060995104,0.00203363,0.0006729515,0.00038086137,0.00016217233,0.00003114002,0.00017729742,0.000056367608],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9950191,0.0012824686,0.0010256462,0.0017123207,0.00013555874,0.00082493667],"domain_scores_gemma":[0.9967193,0.00044680468,0.00062220695,0.0014584914,0.00046347355,0.0002897359],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0011478754,0.0010404551,0.0012153455,0.00045146933,0.00040906598,0.0002782395,0.00074663514,0.0011703558,0.000051751413],"category_scores_gemma":[0.00042239914,0.0010068864,0.0002018314,0.0004106348,0.00035511082,0.0002986928,0.0008576175,0.0013863572,0.0001653772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037805534,0.00021091754,0.0003196878,0.00010500608,0.00032825224,0.000048875998,0.0004656317,0.00002995977,0.99434197,0.0001392189,0.00019412577,0.00003579403],"study_design_scores_gemma":[0.00289347,0.00036855767,0.017384961,0.00025806838,0.00022089011,3.6356704e-7,0.000090806534,0.00018929632,0.9459378,0.000008570835,0.031491905,0.0011553222],"about_ca_topic_score_codex":0.00084702653,"about_ca_topic_score_gemma":0.000036874015,"teacher_disagreement_score":0.04840419,"about_ca_system_score_codex":0.00013717607,"about_ca_system_score_gemma":0.00047944477,"threshold_uncertainty_score":0.99923813},"labels":[],"label_agreement":null},{"id":"W3021919932","doi":"10.1016/j.jid.2016.02.517","title":"480 Trim32 deficiency enhances Th2 immunity and predisposes to features of atopic dermatitis","year":2016,"lang":"en","type":"article","venue":"Journal of Investigative Dermatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Thymic stromal lymphopoietin; Immunology; Atopic dermatitis; Psoriasis; Innate immune system; Chemokine; CCL5; Inflammation; Medicine; Immune system; IL-2 receptor; T cell","score_opus":0.011581617072920795,"score_gpt":0.24256748801892816,"score_spread":0.23098587094600737,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3021919932","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882022,0.0058056787,0.0004184565,0.004772557,0.00029993415,0.00012445942,0.000009565419,0.000009313027,0.00035782915],"genre_scores_gemma":[0.9985848,0.0004999052,0.00037365084,0.00031499125,0.000016560332,0.0000046187674,0.0000025857012,0.0000068732106,0.00019599345],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983109,0.0006290652,0.0006748416,0.00010940202,0.000055909815,0.00021987723],"domain_scores_gemma":[0.99827397,0.0005939694,0.00061857724,0.0001497876,0.0003191697,0.000044541946],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002852659,0.00014775376,0.00047554768,0.0002826401,0.000113284324,0.000007819946,0.00023659045,0.00017914145,0.000067244146],"category_scores_gemma":[0.0010920282,0.00009231861,0.00008404518,0.00014673936,0.00081101025,0.00029109648,0.00007574533,0.0002073561,0.000027805721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011057527,0.000039255203,0.0021536157,0.00004118745,0.00010825013,0.00001291607,0.0021642048,4.3797186e-7,0.9834789,0.0030449596,0.00320907,0.005636613],"study_design_scores_gemma":[0.00085692713,0.0003046327,0.14056659,0.00017571282,0.00003496574,0.0016482407,0.00044741208,1.2466664e-7,0.8507607,0.0021676822,0.0029458746,0.00009116295],"about_ca_topic_score_codex":0.000021686617,"about_ca_topic_score_gemma":0.000011605493,"teacher_disagreement_score":0.13841297,"about_ca_system_score_codex":0.000025250856,"about_ca_system_score_gemma":0.00016700993,"threshold_uncertainty_score":0.37646437},"labels":[],"label_agreement":null},{"id":"W3027219640","doi":"10.1074/jbc.rev120.009402","title":"Lipopolysaccharide O-antigens—bacterial glycans made to measure","year":2020,"lang":"en","type":"review","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":190,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopolysaccharide; Bacterial outer membrane; Lipid A; Innate immune system; Biology; Pathogen; Immune system; Antigen; Bacteria; Microbiology; Glycan; Cell biology; Chemistry; Biochemistry; Immunology; Genetics; Gene; Escherichia coli","score_opus":0.05027793550216578,"score_gpt":0.2899279001910518,"score_spread":0.23964996468888602,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3027219640","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0032628614,0.9948721,0.00004266137,0.00024326895,0.00097208965,0.00022224916,0.000051424595,0.000031356594,0.0003019714],"genre_scores_gemma":[0.000829814,0.9973304,0.0000712759,0.00008148177,0.00095182005,0.000011137006,0.0001386629,0.000027240316,0.0005581398],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99747705,0.00035510142,0.0013967309,0.00031055443,0.00008157272,0.00037896392],"domain_scores_gemma":[0.998103,0.00023053001,0.001145791,0.00025685082,0.0001588063,0.00010498719],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005063813,0.00045735922,0.0021646193,0.000079742014,0.00008905259,0.000034990273,0.0007538927,0.0013885362,0.0016716919],"category_scores_gemma":[0.0010272239,0.00029007313,0.0010317637,0.00016640367,0.00011024835,0.000055841872,0.00017347376,0.0013047167,0.00062354497],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004315816,0.00004938415,0.0000014061711,0.0007856419,0.0005638486,0.00009269491,0.00003191768,8.589013e-8,0.58051056,0.0000057777347,0.0032942914,0.4142328],"study_design_scores_gemma":[0.00031290387,0.00023728976,0.0000025465533,0.0019865404,0.00031643017,0.0014236476,0.000022510627,1.523455e-8,0.1203317,0.0000071226077,0.8750757,0.00028357483],"about_ca_topic_score_codex":0.0000020186887,"about_ca_topic_score_gemma":9.93805e-8,"teacher_disagreement_score":0.8717814,"about_ca_system_score_codex":0.00013948581,"about_ca_system_score_gemma":0.00047411094,"threshold_uncertainty_score":0.9999551},"labels":[],"label_agreement":null},{"id":"W3029078140","doi":"10.1371/journal.ppat.1008553","title":"Irgm1-deficiency leads to myeloid dysfunction in colon lamina propria and susceptibility to the intestinal pathogen Citrobacter rodentium","year":2020,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital","funders":"National Institutes of Health; Pew Charitable Trusts; National Institute of Allergy and Infectious Diseases; U.S. Department of Veterans Affairs","keywords":"Citrobacter rodentium; Lamina propria; Biology; Inflammation; Immunity; Pathogen; Immune system; Microbiology; Immunology; Intestinal mucosa; Intracellular parasite; Medicine; Epithelium","score_opus":0.017434102910891442,"score_gpt":0.21889491850282014,"score_spread":0.2014608155919287,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3029078140","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99337554,0.00021166811,0.0004298331,0.004536601,0.00022571348,0.00090262364,0.000029747043,0.00006593088,0.00022235473],"genre_scores_gemma":[0.99832076,0.0000143063735,0.0001462654,0.00086176733,0.0000622126,0.00009514931,0.000062145045,0.000016713653,0.00042069438],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99835324,0.00038892726,0.00036747465,0.000449766,0.00006756157,0.00037300496],"domain_scores_gemma":[0.9993837,0.00009281415,0.000076481876,0.00029145466,0.00010635923,0.000049194492],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00049815024,0.0001901682,0.00024098683,0.00010758675,0.00017862712,0.000034779885,0.00020827685,0.00014602927,0.00018629235],"category_scores_gemma":[0.0007281177,0.00014465493,0.00005274438,0.00039224813,0.000074037634,0.00010484531,0.00019330671,0.0002905233,0.0009802781],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006409444,0.0000849998,0.028126229,0.000030562172,0.000011882412,0.000008422337,0.0033586805,0.000020067975,0.9628659,0.0000588278,0.00037452107,0.0044190013],"study_design_scores_gemma":[0.001194548,0.001951822,0.58445144,0.00009012167,0.00008946945,0.00006175409,0.0011039239,0.00011363083,0.39850754,0.00004279334,0.0119262375,0.0004667052],"about_ca_topic_score_codex":0.00003002922,"about_ca_topic_score_gemma":0.00014517312,"teacher_disagreement_score":0.5643583,"about_ca_system_score_codex":0.00007036465,"about_ca_system_score_gemma":0.000062289815,"threshold_uncertainty_score":0.9997976},"labels":[],"label_agreement":null},{"id":"W3033435188","doi":"10.1101/2020.06.04.133686","title":"Influence of the microenvironment on the modulation of the host response by the typhoid toxin","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"Kempestiftelserna; Vetenskapsrådet; Cancer Research Foundation in Northern Sweden; Cancerfonden","keywords":"Inflammatory bowel disease; DNA damage; Immune system; Microbiology; Typhoid fever; Biology; Inflammation; Toxin; Context (archaeology); Salmonella; Bacteria; Colitis; Ulcerative colitis; Immunology; In vivo; Crosstalk; Disease; DNA; Medicine; Genetics","score_opus":0.008422814811777977,"score_gpt":0.18888581270207644,"score_spread":0.18046299789029846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3033435188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98952514,0.0010613393,0.000022486274,0.007715185,0.0004644757,0.00101369,0.00016675399,0.000026459405,0.0000044467793],"genre_scores_gemma":[0.9989952,0.00013240844,0.000009508581,0.00066794024,0.00002502025,0.0000875117,3.9892112e-7,0.000033428798,0.000048581056],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99698377,0.0016853157,0.00055940315,0.00036868875,0.00015264853,0.000250202],"domain_scores_gemma":[0.9968,0.00045995117,0.0008278874,0.001769456,0.00012756138,0.000015140273],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011539104,0.0003051647,0.00030565538,0.000046712168,0.00033563445,0.000024938583,0.0012639753,0.0003812722,0.00004153776],"category_scores_gemma":[0.00077565835,0.00015102231,0.00020841905,0.00027914986,0.0005877605,0.00004942228,0.00070349843,0.00088089186,0.000066083645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006010546,0.00005490659,0.0009235143,0.000034052366,0.00014446695,3.0805944e-7,0.00008813472,0.00057949027,0.9963482,0.00034744176,0.0008769496,0.0000014982228],"study_design_scores_gemma":[0.00019292375,0.000039945746,0.32615235,0.0001534346,0.000045953046,2.2423803e-8,0.000008140326,0.000016124943,0.6651139,0.0000019853753,0.008166471,0.00010869164],"about_ca_topic_score_codex":0.0000551188,"about_ca_topic_score_gemma":0.0000010275411,"teacher_disagreement_score":0.33123425,"about_ca_system_score_codex":0.00012835997,"about_ca_system_score_gemma":0.0002828741,"threshold_uncertainty_score":0.6158511},"labels":[],"label_agreement":null},{"id":"W3034223907","doi":"10.1101/mcs.a005298","title":"Clinical IRAK4 deficiency caused by homozygosity for the novel <i>IRAK4</i> (c.1049delG, p.Gly350Glufs*15) variant","year":2020,"lang":"en","type":"article","venue":"Molecular Case Studies","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Genome British Columbia","keywords":"Innate immune system; Biology; Immune system; Immunology; Pattern recognition receptor; Streptococcus pneumoniae; Pathogen-associated molecular pattern; Signal transduction; Toll-like receptor; Microbiology; Cell biology","score_opus":0.04855890570139689,"score_gpt":0.31431567176666747,"score_spread":0.2657567660652706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3034223907","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7592835,0.096741624,0.12391839,0.014980515,0.001902997,0.0021104754,0.00028715283,0.00024884444,0.0005265071],"genre_scores_gemma":[0.99476725,0.00077507785,0.00019326752,0.0035725818,0.000068188725,0.0001314697,0.000066258915,0.000028746645,0.00039718658],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981288,0.00034757462,0.0006024744,0.00043894866,0.00006099514,0.0004212067],"domain_scores_gemma":[0.99831355,0.0008901252,0.00018582545,0.00038208935,0.00019583829,0.0000325518],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008817452,0.00026306493,0.00045684236,0.000032076514,0.0007535932,0.000027419961,0.0002511472,0.0002055093,0.00003132854],"category_scores_gemma":[0.0013025723,0.0001851091,0.00030616033,0.00018363303,0.00040468332,0.00007159241,0.00022837457,0.00033305018,0.00014654185],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00073585415,0.00031469236,0.000103061284,0.0001032492,0.001954732,0.0011169538,0.0024640374,0.000037340298,0.9018143,0.0025739083,0.08052801,0.008253861],"study_design_scores_gemma":[0.008898075,0.00204931,0.00027524753,0.00006246439,0.0016100205,0.002668147,0.00530497,0.0005057656,0.4213982,0.0001826479,0.5559324,0.0011127531],"about_ca_topic_score_codex":0.000047737118,"about_ca_topic_score_gemma":0.000016585613,"teacher_disagreement_score":0.4804161,"about_ca_system_score_codex":0.00002766639,"about_ca_system_score_gemma":0.00006837911,"threshold_uncertainty_score":0.754853},"labels":[],"label_agreement":null},{"id":"W3036110445","doi":"10.1101/2020.06.19.162057","title":"Toll-like receptor 4 is activated by platinum and contributes to cisplatin-induced ototoxicity","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Li Ka Shing Institute of Virology, University of Alberta; University of Alberta; Stollery Children’s Hospital Foundation; Children's Hospital Foundation; Canadian Institutes of Health Research; Alberta Cancer Foundation; Women and Children's Health Research Institute; Children's Health Research Institute","keywords":"Ototoxicity; TLR4; Cisplatin; Toll-like receptor; Receptor; Cancer research; Pharmacology; Chemistry; Medicine; Innate immune system; Internal medicine; Biochemistry; Chemotherapy","score_opus":0.012625455692000789,"score_gpt":0.2181531584759222,"score_spread":0.2055277027839214,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036110445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99168515,0.0015070188,0.0004636205,0.0024329468,0.0015002843,0.0014128094,0.0005945162,0.00039248314,0.000011193445],"genre_scores_gemma":[0.99765646,0.00014992495,0.00031821273,0.0013847948,0.00009040192,0.00024094936,0.000009445421,0.00009734547,0.000052431278],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970337,0.00038235012,0.0007386851,0.001091289,0.00010600539,0.0006479265],"domain_scores_gemma":[0.9980195,0.0002060495,0.00046753293,0.0008289854,0.00034413638,0.00013377822],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00047134384,0.00066897954,0.0009080196,0.0002591356,0.00031581378,0.00015910601,0.00047315244,0.0013298175,0.00026171104],"category_scores_gemma":[0.0005437852,0.00070937566,0.00013737495,0.00041165223,0.00011745578,0.00016688943,0.0006809774,0.0011806453,0.0006489397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005417921,0.00006621339,0.0006031043,0.00011625873,0.0004964293,0.000005966168,0.000052323503,8.644689e-7,0.976714,0.0001191363,0.02127341,0.000010489162],"study_design_scores_gemma":[0.0011884534,0.00014890826,0.008840395,0.00026955587,0.00009366918,3.5686764e-8,0.000008341367,0.000014081923,0.9285212,0.0000017407283,0.060240977,0.00067261135],"about_ca_topic_score_codex":0.0000793124,"about_ca_topic_score_gemma":0.0000010604365,"teacher_disagreement_score":0.048192784,"about_ca_system_score_codex":0.00021692502,"about_ca_system_score_gemma":0.0003636199,"threshold_uncertainty_score":0.9999667},"labels":[],"label_agreement":null},{"id":"W3036179624","doi":"10.1186/s13223-020-00450-0","title":"Serum BPI as a novel biomarker in asthma","year":2020,"lang":"en","type":"article","venue":"Allergy Asthma and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"Jinan University","keywords":"Medicine; Asthma; Immunoglobulin E; Internal medicine; Exhaled nitric oxide; Immunology; Biomarker; Body mass index; Allergy; Gastroenterology; Clinical significance; Antibody; Spirometry; Chemistry","score_opus":0.02951849065627416,"score_gpt":0.2970045224850446,"score_spread":0.26748603182877045,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3036179624","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98017836,0.0056604226,0.00020648549,0.009933033,0.0008147779,0.00022775025,0.000006982229,0.000100046054,0.0028721446],"genre_scores_gemma":[0.9937814,0.0020341065,0.000083973646,0.0025834793,0.000049439335,0.000022102235,0.00007473058,0.000027619042,0.001343156],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9971982,0.00059618655,0.0010097999,0.0005989302,0.000041276653,0.0005555998],"domain_scores_gemma":[0.99880195,0.0005415073,0.00021453793,0.00031871992,0.00006594722,0.000057338773],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00055394834,0.0002844145,0.00061156315,0.00013072859,0.00013560452,0.000021106549,0.0003227849,0.0008599648,0.0015495614],"category_scores_gemma":[0.00068066973,0.00026286315,0.00018738641,0.000261957,0.0005586659,0.00018122573,0.0003134713,0.0007932526,0.0020158929],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009385455,0.0010416348,0.006282359,0.000027356531,0.0026624952,0.00014495735,0.0015251302,0.000006943558,0.71166945,0.019829638,0.0030742467,0.24435036],"study_design_scores_gemma":[0.00719225,0.0017135115,0.44804224,0.000041930143,0.00001471073,0.00024410749,0.0006188212,0.00011058974,0.006047537,0.00027419362,0.5352663,0.0004338126],"about_ca_topic_score_codex":0.00016459805,"about_ca_topic_score_gemma":0.000096215095,"teacher_disagreement_score":0.7056219,"about_ca_system_score_codex":0.000019815785,"about_ca_system_score_gemma":0.00011591763,"threshold_uncertainty_score":0.99998236},"labels":[],"label_agreement":null},{"id":"W3039872463","doi":"10.3389/fcell.2020.00563","title":"TILRR Promotes Migration of Immune Cells Through Induction of Soluble Inflammatory Mediators","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cell and Developmental Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"International Centre for Infectious Diseases; University of Manitoba; Public Health Agency of Canada","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Chemokine; Immune system; Inflammation; Innate immune system; Proinflammatory cytokine; Immunology; Cell biology; Biology; Cell culture; Cell; HeLa; Chemistry; Molecular biology","score_opus":0.008402831696434847,"score_gpt":0.19545716901643131,"score_spread":0.18705433731999646,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3039872463","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940807,0.0036532835,0.000539655,0.00015885179,0.0008141851,0.00021778679,0.0000059475724,0.000015341271,0.000514214],"genre_scores_gemma":[0.9961957,0.0008083449,0.0026511548,0.00004663999,0.000012833854,0.000011653385,0.00013808357,0.000007547017,0.00012807635],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989084,0.00013986786,0.0005471755,0.00019130264,0.000023593613,0.00018964648],"domain_scores_gemma":[0.9996131,0.00004127441,0.0002328715,0.00006457897,0.000035371722,0.000012779835],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001876512,0.00012886085,0.0003311724,0.00010915026,0.000048838006,0.0000022672064,0.000098506076,0.00027310455,0.000065431945],"category_scores_gemma":[0.000037067064,0.000116946656,0.000041470907,0.00014696109,0.00024757258,0.00012700251,0.00007829873,0.0001438542,0.00002042509],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003212675,0.00004087995,0.019585418,0.0000861987,0.00004655978,5.9097334e-7,0.005002481,0.0000017243462,0.9698828,0.0000618341,0.0018881852,0.0030820668],"study_design_scores_gemma":[0.0009555396,0.00019789368,0.004825061,0.000020520767,0.000010623346,0.0000034546247,0.0022242167,0.000012128262,0.98214626,0.00020070517,0.009284139,0.000119464756],"about_ca_topic_score_codex":0.00006915126,"about_ca_topic_score_gemma":0.0000058270753,"teacher_disagreement_score":0.014760355,"about_ca_system_score_codex":0.000026203428,"about_ca_system_score_gemma":0.00009154496,"threshold_uncertainty_score":0.47689462},"labels":[],"label_agreement":null},{"id":"W3040787992","doi":"10.1164/ajrccm-conference.2020.201.1_meetingabstracts.a2586","title":"Physiologically Derived Transcriptional Signature of Endotoxin Tolerance Identifies Immune Suppression in Early Sepsis","year":2020,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Signature (topology); Sepsis; Immune system; Immunology; Computer science; Computational biology; Biology; Mathematics","score_opus":0.013052373317272822,"score_gpt":0.2216345002449613,"score_spread":0.2085821269276885,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3040787992","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956819,0.0023431731,0.00029114928,0.0008318934,0.0001688499,0.000210461,0.000010332862,0.00004390373,0.0004183789],"genre_scores_gemma":[0.9989515,0.00011744265,0.000093589246,0.00021741026,0.000014410527,0.000018805757,0.0000934087,0.000006881462,0.0004865513],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989099,0.0002390054,0.00041401258,0.00020651991,0.00004116642,0.00018939628],"domain_scores_gemma":[0.99961036,0.000096387324,0.00010183152,0.000121185294,0.000058425452,0.000011790946],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00010887664,0.00013043931,0.00029578956,0.00006222733,0.000053376232,0.000007556923,0.00019329299,0.00024109468,0.0013350416],"category_scores_gemma":[0.00007680725,0.00010257553,0.00012076294,0.0001513723,0.00010823441,0.00018604583,0.000039361144,0.00026782957,0.00013082482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011485891,0.000059097554,0.00031879364,0.00002709561,0.000036791786,0.0000026259654,0.0015591388,0.00006463941,0.9955634,0.0003741251,0.00029947422,0.00054622046],"study_design_scores_gemma":[0.0010493038,0.00014697084,0.15168643,0.00004099085,0.0000072910993,0.0000018720903,0.00019096232,0.000026205946,0.845739,0.00009789185,0.0009136477,0.00009943413],"about_ca_topic_score_codex":0.00004498523,"about_ca_topic_score_gemma":0.0000032318012,"teacher_disagreement_score":0.15136765,"about_ca_system_score_codex":0.000009405145,"about_ca_system_score_gemma":0.000026584603,"threshold_uncertainty_score":0.9995779},"labels":[],"label_agreement":null},{"id":"W3043659712","doi":"10.1016/j.ceca.2020.102253","title":"PANX1 in inflammation heats up: New mechanistic insights with implications for injury and infection","year":2020,"lang":"en","type":"article","venue":"Cell Calcium","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of British Columbia; University of Victoria","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Downregulation and upregulation; Inflammation; Purinergic receptor; Cell biology; Mechanism (biology); Tumor necrosis factor alpha; Neuroscience; Biology; Immunology; Extracellular; Physics; Gene; Biochemistry","score_opus":0.025283786194189986,"score_gpt":0.25412488689408524,"score_spread":0.22884110069989527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3043659712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96202487,0.00055036234,0.03411924,0.002028734,0.00017641687,0.0006410669,0.0000058365335,0.000070526425,0.0003829615],"genre_scores_gemma":[0.99881643,0.000066098946,0.000099189056,0.0001561212,0.00005487541,0.00006944023,0.00016017118,0.000012544328,0.0005651469],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99937826,0.000063600644,0.0002056725,0.00018860919,0.000014454417,0.00014941808],"domain_scores_gemma":[0.9996645,0.00007126275,0.00007686604,0.000109723005,0.00005049847,0.000027187778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006613334,0.00010785282,0.0001418497,0.00009019262,0.0001079402,0.000016894828,0.00004628576,0.00014440506,0.000029315652],"category_scores_gemma":[0.00004624972,0.00009477747,0.00002420581,0.00013580061,0.000031288953,0.0001517779,0.000022980805,0.00011759552,0.000077680175],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00052857597,0.000013552653,0.000563845,0.00004728537,0.0000147208475,2.3267904e-7,0.0010206879,0.000014278906,0.98614764,0.0029217245,0.0010124992,0.0077149817],"study_design_scores_gemma":[0.0019195091,0.000588822,0.020923356,0.000023612023,0.00004261574,0.000008436099,0.00007694257,0.00011805147,0.92109543,0.0013699722,0.0536364,0.00019687784],"about_ca_topic_score_codex":0.00006983776,"about_ca_topic_score_gemma":0.00003324096,"teacher_disagreement_score":0.06505221,"about_ca_system_score_codex":0.0000306617,"about_ca_system_score_gemma":0.00008682778,"threshold_uncertainty_score":0.3864913},"labels":[],"label_agreement":null},{"id":"W3046301510","doi":"10.3168/jds.2020-18652","title":"Effects of lipopolysaccharide exposure in primary bovine ruminal epithelial cells","year":2020,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":51,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Canadian Institutes of Health Research; University of Saskatchewan; CRC Health Group","keywords":"Lipopolysaccharide; Proinflammatory cytokine; TLR4; Chemokine; TLR2; Propidium iodide; Flow cytometry; Molecular biology; Biology; Tumor necrosis factor alpha; Chemistry; Andrology; Immunology; Inflammation; Biochemistry; Medicine; Apoptosis","score_opus":0.006643912198271343,"score_gpt":0.2154220701116276,"score_spread":0.20877815791335624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046301510","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971675,0.001271694,0.00023991584,0.00053005945,0.00059245445,0.00007705845,0.0000015439973,0.0000041753965,0.000115560484],"genre_scores_gemma":[0.99944407,0.00007597621,0.00019144385,0.00016058353,0.00005346835,5.4344054e-7,5.4360925e-7,0.0000034192376,0.00006994747],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989863,0.000121191304,0.00048331625,0.00010788772,0.00010928628,0.00019202243],"domain_scores_gemma":[0.9992311,0.00015059771,0.00039344304,0.00008545189,0.00010854809,0.000030870888],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066365843,0.00007949981,0.00025158608,0.0002096305,0.000057155252,0.000009882867,0.00041185334,0.00006784651,0.000037384143],"category_scores_gemma":[0.00033945206,0.00006227001,0.00007384171,0.00029835734,0.00030903585,0.0004333959,0.00007249001,0.00027388148,0.00003102579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008136296,0.000053769498,0.00068486313,0.00004548856,0.00001103866,0.000035925677,0.0009423141,0.0000129389255,0.99262637,0.000048979884,0.0001784825,0.004546208],"study_design_scores_gemma":[0.0011593496,0.0010559928,0.026507717,0.00007017808,0.000014645128,0.000092771996,0.00009872248,0.0000074557656,0.96988755,0.000020175426,0.0010249716,0.000060447812],"about_ca_topic_score_codex":0.000007290688,"about_ca_topic_score_gemma":4.687116e-7,"teacher_disagreement_score":0.025822854,"about_ca_system_score_codex":0.00003906687,"about_ca_system_score_gemma":0.0003870885,"threshold_uncertainty_score":0.25392973},"labels":[],"label_agreement":null},{"id":"W3046931952","doi":"10.1093/labmed/lmaa055","title":"Quantitative Assessment of the Effects of<i>IL-1ß</i>-511 C&amp;gt;T Variant on Breast Cancer Risk: An Updated Meta-Analysis of 3331 Cases and 3609 Controls","year":2020,"lang":"en","type":"review","venue":"Laboratory Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Meta-analysis; Breast cancer; Odds ratio; Medicine; Internal medicine; Web of science; Scopus; Oncology; Gynecology; MEDLINE; Cancer; Biology","score_opus":0.044849137234779166,"score_gpt":0.36718323196856234,"score_spread":0.32233409473378316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3046931952","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0068339547,0.9884616,0.000032508975,0.00017436905,0.00033926708,0.00093746244,0.0031734004,0.000013353557,0.000034055585],"genre_scores_gemma":[0.03103962,0.9677429,0.0000300654,0.000120020864,0.00003117523,0.00011901141,0.0008051816,0.000030613453,0.000081398255],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99417764,0.0039531775,0.0011629696,0.00037427715,0.00014600005,0.00018594682],"domain_scores_gemma":[0.9942295,0.0024036572,0.0022110597,0.0006642602,0.00045677327,0.000034766843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010562446,0.000413867,0.004950746,0.0003676571,0.00008539611,0.0000035862654,0.00029084654,0.00032811778,0.00065044814],"category_scores_gemma":[0.0007188157,0.0002164805,0.0006194674,0.0013251842,0.0005075252,0.000069192894,0.00006440444,0.0004732032,0.0000038983508],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0021773512,0.0008143522,0.0002557233,0.014593152,0.79553306,0.00008300985,0.002313523,0.00004162123,0.101966426,0.0072493805,0.003406762,0.07156565],"study_design_scores_gemma":[0.0017301317,0.0019448693,0.0022264922,0.0023590776,0.6001068,0.000026394819,0.00015357356,0.000010786396,0.0023078213,0.000005967696,0.38879532,0.00033282602],"about_ca_topic_score_codex":0.00044171794,"about_ca_topic_score_gemma":0.00011751798,"teacher_disagreement_score":0.38538855,"about_ca_system_score_codex":0.000047090045,"about_ca_system_score_gemma":0.0005131453,"threshold_uncertainty_score":0.88278186},"labels":[],"label_agreement":null},{"id":"W3047817653","doi":"10.4049/jimmunol.2000440","title":"Identification of a Novel Antisepsis Pathway: Sectm1a Enhances Macrophage Phagocytosis of Bacteria through Activating GITR","year":2020,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute","funders":"National Institute of General Medical Sciences; National Institutes of Health; American Heart Association","keywords":"Phagocytosis; Sepsis; Macrophage; Inflammation; PI3K/AKT/mTOR pathway; Immunology; Biology; Microbiology; Immune system; Signal transduction; Cell biology; In vitro","score_opus":0.023735962511085798,"score_gpt":0.25606178209084846,"score_spread":0.23232581957976267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3047817653","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9886161,0.005298154,0.0044734976,0.0008684964,0.0005065436,0.00013230745,0.000017154916,0.000010123123,0.00007758789],"genre_scores_gemma":[0.99838686,0.0011877446,0.00022433813,0.00007152498,0.000043185708,0.0000021177377,0.000008392604,0.000013571299,0.00006224713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788946,0.0005458074,0.0011942697,0.000104105085,0.000064855965,0.00020150606],"domain_scores_gemma":[0.996843,0.00040942678,0.0021820483,0.00023741521,0.00031906212,0.000009052994],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007586079,0.0001478493,0.0005138264,0.00010385681,0.00011471442,0.0000072423436,0.00049108855,0.00019148047,0.00021875271],"category_scores_gemma":[0.000468177,0.000104741746,0.00017146069,0.00026635078,0.00035187055,0.0003278133,0.00010040059,0.0003772224,0.000024129167],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001928301,0.00011048588,0.00004021163,0.000042321128,0.00061444205,0.0000013016108,0.0059066955,0.000018868308,0.9857797,0.00018522002,0.00007068401,0.005301768],"study_design_scores_gemma":[0.0014076467,0.00065831747,0.004093868,0.00007348085,0.00008895823,0.0001801995,0.001779943,0.000012217921,0.9903529,0.00004939151,0.0012175632,0.00008549911],"about_ca_topic_score_codex":0.00003516988,"about_ca_topic_score_gemma":9.222027e-7,"teacher_disagreement_score":0.009770744,"about_ca_system_score_codex":0.00002526191,"about_ca_system_score_gemma":0.00012170603,"threshold_uncertainty_score":0.42712444},"labels":[],"label_agreement":null},{"id":"W3065170598","doi":"10.1007/978-1-0716-0802-9_19","title":"Isolation and Preparation of Bone Marrow-Derived Immune Cells for Metabolic Analysis","year":2020,"lang":"en","type":"book-chapter","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"Immune system; Bone marrow; Isolation (microbiology); Biology; Immunology; Cell biology; Microbiology","score_opus":0.01608924888270522,"score_gpt":0.3318431209736655,"score_spread":0.31575387209096023,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3065170598","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00352633,0.029498864,0.9619128,0.00014964382,0.00031874285,0.0008673493,0.000060692102,0.000027418806,0.0036381264],"genre_scores_gemma":[0.056741882,0.004288085,0.9001032,0.00032161296,0.00007956334,0.0002764971,0.005062673,0.00015695037,0.03296951],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975453,0.0008775809,0.0008907245,0.00046467024,0.000022347598,0.00019936023],"domain_scores_gemma":[0.99849564,0.00038477257,0.0006474752,0.0003452039,0.00011328382,0.000013642566],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010994131,0.0002933508,0.0012012549,0.0006542785,0.000047747646,0.0000061027818,0.00012777546,0.000945405,0.00013506819],"category_scores_gemma":[0.0002322106,0.0002907076,0.00037566095,0.000130745,0.00020900002,0.00003346514,0.00009834972,0.00027594873,0.0000107430715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00057707715,0.000011093386,0.000010835734,0.00004600532,0.001332779,0.0000013395218,0.00016734967,0.00002768039,0.9550035,0.03446158,0.000010868527,0.0083498685],"study_design_scores_gemma":[0.0007893517,0.0003257403,0.00010613213,0.000023128647,0.0012508568,0.0000053763965,0.000014120127,0.00022314236,0.957112,0.0112436125,0.028637508,0.00026899923],"about_ca_topic_score_codex":0.000023231469,"about_ca_topic_score_gemma":0.0000068578497,"teacher_disagreement_score":0.061809607,"about_ca_system_score_codex":0.000021223088,"about_ca_system_score_gemma":0.00005429415,"threshold_uncertainty_score":0.9999545},"labels":[],"label_agreement":null},{"id":"W3080287521","doi":"10.1039/d0ay00872a","title":"Novel RP-HPLC based assay for selective and sensitive endotoxin quantification","year":2020,"lang":"en","type":"article","venue":"Analytical Methods","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Eurostars; Innosuisse - Schweizerische Agentur für Innovationsförderung; Haute école Spécialisée de Suisse Occidentale; SCIEX","keywords":"Chromatography; Chemistry; High-performance liquid chromatography","score_opus":0.06419860312713199,"score_gpt":0.36829059355392796,"score_spread":0.30409199042679597,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3080287521","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013993932,0.00014005048,0.98042434,0.004135102,0.00009904439,0.00038023177,0.000018949377,0.000054429434,0.0007539275],"genre_scores_gemma":[0.81542623,0.000012672213,0.1820687,0.0014608182,0.00006961843,0.000057363643,0.00015490087,0.000023617662,0.00072607707],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998469,0.00073605764,0.00025567366,0.0003011814,0.000024692952,0.00021340956],"domain_scores_gemma":[0.9973002,0.0023082488,0.000085697044,0.000119826705,0.00015255892,0.00003346017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011955163,0.0001278933,0.000272904,0.0000689424,0.00012299299,0.000017650875,0.00006382603,0.00019200933,0.000036729933],"category_scores_gemma":[0.0030461717,0.000113530616,0.00009295559,0.00018777946,0.00012549668,0.000075671844,0.000024348936,0.0001849959,0.000050018953],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006153695,0.00003610222,0.000028106822,0.000017609029,0.00013623487,5.3965795e-7,0.00020413152,0.000008643227,0.9602204,0.011994544,0.00060995837,0.026128387],"study_design_scores_gemma":[0.0010330176,0.00024663893,0.0021969657,0.000009241537,0.00012800902,0.000008837094,0.00012148885,0.04173613,0.9360869,0.00019849815,0.018087402,0.00014688494],"about_ca_topic_score_codex":0.000014577252,"about_ca_topic_score_gemma":9.299214e-7,"teacher_disagreement_score":0.8014323,"about_ca_system_score_codex":0.00002316831,"about_ca_system_score_gemma":0.000060609756,"threshold_uncertainty_score":0.46296442},"labels":[],"label_agreement":null},{"id":"W3085940154","doi":"10.3389/fcimb.2020.00487","title":"ABCF1 Regulates dsDNA-induced Immune Responses in Human Airway Epithelial Cells","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Waterloo; McMaster University","funders":"Canadian Institutes of Health Research; British Columbia Lung Association","keywords":"Biology; Innate immune system; Respiratory epithelium; Cell biology; Gene knockdown; RIG-I; CXCL10; Epithelium; Immune system; Immunology; Chemokine; Cell culture; Genetics","score_opus":0.009586843432140894,"score_gpt":0.21440265834023567,"score_spread":0.20481581490809478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3085940154","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9934194,0.0030180877,0.0007855978,0.00046521283,0.0016185442,0.00038832903,0.000016011612,0.00007204031,0.00021677942],"genre_scores_gemma":[0.99818015,0.0004456406,0.000103051134,0.00020243008,0.0000613766,0.000024168667,0.00022930044,0.000025457284,0.0007284471],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974099,0.00091874093,0.00068524183,0.0004931414,0.000018346016,0.0004746787],"domain_scores_gemma":[0.9994422,0.00008213911,0.00018413946,0.0002199457,0.00004028372,0.000031253516],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005507052,0.0002867805,0.00056099,0.000476983,0.00018781016,0.000021053907,0.00015465397,0.00063048454,0.00019626482],"category_scores_gemma":[0.00009472818,0.00028690053,0.00011622851,0.00033165328,0.00025591903,0.00017518124,0.00010542329,0.00058166665,0.00011539107],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007977043,0.000084193096,0.009618636,0.00003161007,0.000058714308,0.0000133423455,0.0008823881,0.000013146962,0.9849605,0.000073746894,0.001485802,0.0019802463],"study_design_scores_gemma":[0.0027151462,0.00047902748,0.0055383146,0.000030951433,0.000019867213,0.000035239245,0.00018854691,0.000034308654,0.95674324,0.00011168714,0.033798873,0.00030482607],"about_ca_topic_score_codex":0.00030576612,"about_ca_topic_score_gemma":0.000025115587,"teacher_disagreement_score":0.03231307,"about_ca_system_score_codex":0.0000870001,"about_ca_system_score_gemma":0.000054957723,"threshold_uncertainty_score":0.99995834},"labels":[],"label_agreement":null},{"id":"W3086103973","doi":"10.1111/imm.13260","title":"Implications of cellular metabolism for immune cell migration","year":2020,"lang":"en","type":"review","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Chemokine; Immune system; Biology; Chemokine receptor; Cell biology; Cell metabolism; Receptor; Cytoskeleton; Cell migration; Cell; Immunology; Biochemistry","score_opus":0.024062620719186318,"score_gpt":0.28156063076515564,"score_spread":0.25749801004596934,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3086103973","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00004433548,0.9939593,0.0020822785,0.0002614237,0.0011885914,0.0016408477,0.00021760122,0.00008590706,0.00051972986],"genre_scores_gemma":[0.00034304158,0.99359065,0.00018915939,0.000019704195,0.000082793886,0.0007061241,0.0036988044,0.00007526301,0.0012944613],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969902,0.0005850516,0.0014828136,0.0004766977,0.000028567163,0.00043667573],"domain_scores_gemma":[0.9971748,0.00055476365,0.0012664456,0.0007866878,0.00020180157,0.000015498399],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00029891336,0.00048849353,0.002362531,0.0003796184,0.0001774315,0.000012229822,0.0006815666,0.001194396,0.00025660798],"category_scores_gemma":[0.00017030687,0.0004366671,0.0010191883,0.0003494419,0.00024509686,0.00009986241,0.00015260155,0.00052957656,0.00080241944],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011464991,0.000107580534,1.8911454e-7,0.0026613106,0.0010168348,8.431921e-7,0.00021513071,2.1146676e-7,0.27234644,0.0056067724,0.0011957022,0.71673435],"study_design_scores_gemma":[0.00067377504,0.0001776629,0.00000968723,0.00043606863,0.0012657143,0.000039328355,0.000038889175,4.0268898e-7,0.06705584,0.00020950934,0.92976874,0.00032439563],"about_ca_topic_score_codex":0.000039762053,"about_ca_topic_score_gemma":0.0000020555378,"teacher_disagreement_score":0.928573,"about_ca_system_score_codex":0.00007100285,"about_ca_system_score_gemma":0.0004396493,"threshold_uncertainty_score":0.99997556},"labels":[],"label_agreement":null},{"id":"W3086420271","doi":"10.1039/d0fo01711f","title":"A polysaccharide extracted from alfalfa activates splenic B cells by TLR4 and acts primarily <i>via</i> the MAPK/p38 pathway","year":2020,"lang":"en","type":"article","venue":"Food & Function","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":28,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College; Agriculture and Agri-Food Canada","funders":"","keywords":"TLR4; p38 mitogen-activated protein kinases; Polysaccharide; MAPK/ERK pathway; Cell biology; Chemistry; Biology; Signal transduction; Biochemistry","score_opus":0.008648806070993177,"score_gpt":0.16870997448692937,"score_spread":0.1600611684159362,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3086420271","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913317,0.0040432047,0.0010380482,0.0020526117,0.00075303443,0.00035594671,0.000067476845,0.00014054106,0.00021743638],"genre_scores_gemma":[0.99769044,0.00017829072,0.000016156868,0.0012521187,0.00011874084,0.000030052332,0.0004603946,0.000024175995,0.00022965847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998776,0.00025012155,0.0002924081,0.00033891294,0.000056300345,0.00028625946],"domain_scores_gemma":[0.9992316,0.0002482491,0.00018882495,0.00024508912,0.00005248488,0.00003379448],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013091396,0.000216705,0.00022349041,0.000041676944,0.00027441437,0.000050574967,0.00014886439,0.00027425418,0.0004916319],"category_scores_gemma":[0.00007963393,0.00016247577,0.00008324146,0.00015121333,0.000080712314,0.00031585223,0.000080414124,0.0004017204,0.0005630134],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044298363,0.000042014824,0.000090284884,0.0000075713056,0.00023317811,7.9560994e-7,0.0005521199,0.0000010410275,0.97849375,0.000051734616,0.0036617604,0.01243593],"study_design_scores_gemma":[0.0008479841,0.0020575863,0.003296534,0.000012249166,0.00008069532,0.000007586278,0.00018937973,0.000014610034,0.8038214,0.00009382582,0.1894105,0.00016768982],"about_ca_topic_score_codex":0.00013028109,"about_ca_topic_score_gemma":0.00001394044,"teacher_disagreement_score":0.18574873,"about_ca_system_score_codex":0.000028320395,"about_ca_system_score_gemma":0.000052814008,"threshold_uncertainty_score":0.7236587},"labels":[],"label_agreement":null},{"id":"W3088045753","doi":"10.1016/j.ejmech.2020.112863","title":"Amphiphilic desmuramyl peptides for the rational design of new vaccine adjuvants: Synthesis, in vitro modulation of inflammatory response and molecular docking studies","year":2020,"lang":"en","type":"article","venue":"European Journal of Medicinal Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Energy; NOSM University; Lakehead University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Muramyl dipeptide; Chemistry; NOD2; Rational design; Docking (animal); Stereochemistry; Dipeptide; Biochemistry; In vitro; Receptor; Innate immune system; Amino acid; Biology","score_opus":0.033153266914804184,"score_gpt":0.2597577051853577,"score_spread":0.2266044382705535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3088045753","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9756982,0.015452739,0.0064482973,0.002217045,0.00005159135,0.000118442826,0.0000020459534,0.0000035633964,0.000008109671],"genre_scores_gemma":[0.99904996,0.00043098506,0.0003429822,0.00006452997,0.0000836246,0.0000016067575,0.0000028083607,0.000010789682,0.000012731789],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984842,0.0005508183,0.0006945228,0.0000899825,0.000079202655,0.00010126793],"domain_scores_gemma":[0.9977733,0.0013223985,0.00059766264,0.00008943696,0.00019365456,0.000023543858],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0021778313,0.00010606912,0.0003025007,0.00005523215,0.000044985925,0.0000035626178,0.00015875004,0.000039484537,0.000016919948],"category_scores_gemma":[0.0035959654,0.00007497022,0.00006522234,0.000077288394,0.00010854141,0.00007928909,0.000034235996,0.00018956652,7.6485884e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0123231085,0.000013283362,0.00013479953,0.00011840177,0.00020873091,0.000020570547,0.0015392742,0.0014736537,0.97777164,0.0000038013359,0.00026533558,0.0061273947],"study_design_scores_gemma":[0.0019383989,0.0002308016,0.007269603,0.00037001172,0.00008864464,0.000121306664,0.0012333186,0.00024167188,0.9880304,0.000032086737,0.00037928825,0.00006451069],"about_ca_topic_score_codex":7.956998e-7,"about_ca_topic_score_gemma":4.9772495e-8,"teacher_disagreement_score":0.023351775,"about_ca_system_score_codex":0.000021269147,"about_ca_system_score_gemma":0.00012851483,"threshold_uncertainty_score":0.43049663},"labels":[],"label_agreement":null},{"id":"W3088291716","doi":"10.4103/1673-5374.293134","title":"Regulation of neuroimmune processes by damage- and resolution-associated molecular patterns","year":2020,"lang":"en","type":"review","venue":"Neural Regeneration Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"","keywords":"Neuroinflammation; Neuroscience; Neuroimmunology; Immune system; Central nervous system; Biology; Nervous system; Peripheral nervous system; Inflammation; Damp; Immunology; Neuroregeneration; Medicine","score_opus":0.06968194088514428,"score_gpt":0.36167872329051626,"score_spread":0.29199678240537197,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3088291716","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006222715,0.99180657,0.00006644132,0.0006122455,0.00018666007,0.00091839675,0.00008271848,0.00004519449,0.00005907519],"genre_scores_gemma":[0.014916684,0.9788737,0.0000058329847,0.00001991692,0.000031646065,0.00011710185,0.0036031012,0.00004598648,0.0023859746],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9956183,0.0025511705,0.00077653263,0.00047779307,0.00021264891,0.0003635679],"domain_scores_gemma":[0.99818426,0.00047768245,0.00041451532,0.00033198838,0.00055951724,0.000032022534],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000772897,0.0002831082,0.00083723984,0.0003568086,0.00029017485,0.000063526786,0.0002840974,0.00055175915,0.00010313064],"category_scores_gemma":[0.0014270408,0.00024865317,0.00012986622,0.00078515295,0.00020888218,0.00017762306,0.00017758488,0.0008012888,0.000059490878],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015075742,0.00012563162,0.0000090987,0.008078986,0.00032479575,0.0000139493695,0.0002345998,0.000014938552,0.51104397,0.0005960536,0.015078599,0.46432862],"study_design_scores_gemma":[0.00047748588,0.00039699947,0.00004275243,0.0019074199,0.00015251417,0.000029752293,0.000025296524,0.00014761912,0.10537339,0.000020908166,0.89114046,0.0002853716],"about_ca_topic_score_codex":0.000064403335,"about_ca_topic_score_gemma":0.00001339542,"teacher_disagreement_score":0.8760619,"about_ca_system_score_codex":0.000085582484,"about_ca_system_score_gemma":0.00038354157,"threshold_uncertainty_score":0.99999654},"labels":[],"label_agreement":null},{"id":"W3089208583","doi":"10.3390/biom10101382","title":"Comparative Characterization of Two cxcl8 Homologs in Oplegnathus fasciatus: Genomic, Transcriptional and Functional Analyses","year":2020,"lang":"en","type":"article","venue":"Biomolecules","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; Memorial University of Newfoundland","funders":"Memorial University of Newfoundland; National Research Foundation of Korea; Ministry of Oceans and Fisheries; National Research Foundation","keywords":"Biology; Edwardsiella tarda; Flagellin; Chemokine; Streptococcus iniae; Chemotaxis; Gene; Interleukin 8; Homology (biology); Recombinant DNA; In silico; CXCL14; Molecular biology; Microbiology; Genetics; Inflammation; Immunology; CXCL10; Cytokine; Receptor","score_opus":0.061786059948043814,"score_gpt":0.2953126960010571,"score_spread":0.23352663605301327,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3089208583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948976,0.0018373124,0.0022990433,0.00057895755,0.000089032874,0.00012709943,0.000046323228,0.000017134586,0.00010748082],"genre_scores_gemma":[0.99907255,0.00010348097,0.00006690266,0.00013629196,0.000017922173,0.0000098149685,0.00054001,0.0000048499646,0.000048157704],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99925417,0.00016520027,0.00026712663,0.00016850121,0.00002966191,0.000115344934],"domain_scores_gemma":[0.99974436,0.000037595677,0.00009936062,0.000057373192,0.00004816416,0.000013144838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007700195,0.00010077402,0.00022205272,0.00012494401,0.000048563295,0.000007876298,0.000055436456,0.00008281459,0.00016263056],"category_scores_gemma":[0.00001657032,0.00009490906,0.000047526737,0.00015331195,0.00018468683,0.000103327446,0.000022734093,0.00008243453,0.000044599223],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037312804,0.000043515294,0.0011013146,0.000012107429,0.00007462784,0.0000019459274,0.0011825215,0.000008837003,0.9948806,0.0017936092,0.000031368374,0.00049642066],"study_design_scores_gemma":[0.0012129159,0.00011229734,0.25234434,0.000013326811,0.000024309771,0.000012633232,0.00021114909,0.000092746624,0.74463,0.000049230297,0.0011977021,0.0000993962],"about_ca_topic_score_codex":0.000039582643,"about_ca_topic_score_gemma":0.0000131342495,"teacher_disagreement_score":0.25124303,"about_ca_system_score_codex":0.000014346108,"about_ca_system_score_gemma":0.000045639365,"threshold_uncertainty_score":0.38702792},"labels":[],"label_agreement":null},{"id":"W3090443648","doi":"10.3390/vaccines8040569","title":"Combination of Innate Immune Modulators as Vaccine Adjuvants in Mice","year":2020,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Energy; University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Adjuvant; Ovalbumin; Immune system; Muramyl dipeptide; TLR3; Immunology; Immunopotentiator; Antigen; TLR2; Splenocyte; Innate immune system; Biology; Toll-like receptor","score_opus":0.009014819788959644,"score_gpt":0.2282270420143937,"score_spread":0.21921222222543404,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3090443648","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946383,0.0025966447,0.000018854902,0.0018530061,0.00027267556,0.00018549523,0.000002516057,0.000039326722,0.0003931432],"genre_scores_gemma":[0.9992772,0.00016345699,0.0000138457035,0.00012726596,0.000015821344,0.000007661279,0.00007024343,0.000011331931,0.00031322232],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990895,0.00013035412,0.0004368248,0.00015627316,0.000026300355,0.00016078711],"domain_scores_gemma":[0.9995515,0.00006380671,0.00016397428,0.0001266428,0.00008331206,0.000010791017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016203287,0.000116339346,0.00027526068,0.00015588399,0.000035825673,0.0000041975436,0.00015415312,0.00013507619,0.00031988558],"category_scores_gemma":[0.00022838364,0.000106475214,0.000051850144,0.00032610007,0.000010311439,0.00016244299,0.000058425147,0.00013711337,0.00035072106],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00093406474,0.00007418565,0.006882336,0.00003865295,0.00004776529,0.0000026507446,0.00094436586,0.000036511963,0.9840395,0.00083976315,0.0004512471,0.005708962],"study_design_scores_gemma":[0.0028429402,0.00023523197,0.15371303,0.00004011003,0.0000141321,0.000008794277,0.00018511903,0.00015411747,0.83973044,0.00021745582,0.0027419196,0.000116709445],"about_ca_topic_score_codex":0.00014024493,"about_ca_topic_score_gemma":0.000009531486,"teacher_disagreement_score":0.1468307,"about_ca_system_score_codex":0.000014319648,"about_ca_system_score_gemma":0.00003053548,"threshold_uncertainty_score":0.45079267},"labels":[],"label_agreement":null},{"id":"W3092156103","doi":"10.1097/ta.0000000000002978","title":"Ethinyl estradiol sulfate acts without fluid resuscitation through estrogen receptors to rapidly protect the cardiovascular system from severe hemorrhage","year":2020,"lang":"en","type":"article","venue":"The Journal of Trauma: Injury, Infection, and Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Cegep de Sept Iles","funders":"","keywords":"Estrogen receptor; Nitric oxide; Enos; Nitric oxide synthase; Estrogen; Pharmacology; Medicine; Chemistry; Internal medicine; Endocrinology","score_opus":0.018866347622982164,"score_gpt":0.25911488279865524,"score_spread":0.24024853517567307,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3092156103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9822334,0.008437923,0.0038592587,0.0033929439,0.0012546164,0.00052847876,0.000027606438,0.000053639713,0.00021214051],"genre_scores_gemma":[0.99884224,0.00023163596,0.00013067675,0.00029405026,0.0004373306,0.000014098935,0.000016652488,0.000021427612,0.0000118691805],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973357,0.0014937776,0.0005544136,0.00018971211,0.0001640572,0.0002623456],"domain_scores_gemma":[0.9986726,0.0003685229,0.0001462745,0.0002695931,0.0004778377,0.00006519238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010019102,0.00021667086,0.00041416817,0.000055507666,0.00062894536,0.0000642636,0.00022648892,0.00023032099,0.000037678088],"category_scores_gemma":[0.0007056779,0.00013064046,0.00028334,0.00021187517,0.00021565643,0.00031607674,0.000043159675,0.0006942656,0.00004637178],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.027117182,0.0002675771,0.005459924,0.0031801627,0.0066209678,0.00011675414,0.20547964,0.0021149025,0.6204183,0.006121894,0.013197302,0.10990537],"study_design_scores_gemma":[0.006222437,0.007570295,0.021079263,0.0009919772,0.0044452148,0.003272324,0.062109116,0.00007700813,0.745951,0.001042923,0.14597557,0.0012628731],"about_ca_topic_score_codex":0.0003141279,"about_ca_topic_score_gemma":0.000010746541,"teacher_disagreement_score":0.14337051,"about_ca_system_score_codex":0.000091251095,"about_ca_system_score_gemma":0.0000970664,"threshold_uncertainty_score":0.53273636},"labels":[],"label_agreement":null},{"id":"W3093092111","doi":"10.3390/vaccines8040605","title":"Probiotic Lactobacilli Limit Avian Influenza Virus Subtype H9N2 Replication in Chicken Cecal Tonsil Mononuclear Cells","year":2020,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Immune system; Microbiology; Biology; Probiotic; CpG Oligodeoxynucleotide; Virus; Interferon; Peripheral blood mononuclear cell; Virology; Cytokine; Immunology; Bacteria; Gene; Gene expression","score_opus":0.025442812649548965,"score_gpt":0.243634318799729,"score_spread":0.21819150615018001,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3093092111","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9952841,0.0010946069,0.00002380286,0.0022985635,0.0002259162,0.00039383222,0.000007688427,0.000130589,0.0005409402],"genre_scores_gemma":[0.99810535,0.0001618429,0.000058480273,0.0009965567,0.00006585907,0.000019677273,0.00007471473,0.00002524117,0.0004922963],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986799,0.00019084863,0.00042502728,0.00038466378,0.000030708437,0.0002889039],"domain_scores_gemma":[0.999253,0.000084001316,0.00014162961,0.00042767107,0.00006439728,0.000029328334],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00020497195,0.00018243214,0.00026191183,0.00011994075,0.000097623946,0.000024457002,0.00022722775,0.00027212748,0.000398782],"category_scores_gemma":[0.0002479303,0.0001669834,0.00006954958,0.0003086045,0.000029556462,0.00020618767,0.00008249266,0.00029408917,0.0029438331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008741487,0.000074715856,0.004184813,0.00003282156,0.00004033973,0.0000040889404,0.0012193429,0.00006087458,0.9861488,0.00014387275,0.0024721865,0.0047440347],"study_design_scores_gemma":[0.0013766661,0.00028155712,0.071847774,0.00003508172,0.000027735245,0.000012849231,0.00016244515,0.00008395571,0.82283765,0.000060721006,0.103008434,0.00026511657],"about_ca_topic_score_codex":0.00015734638,"about_ca_topic_score_gemma":0.00005946176,"teacher_disagreement_score":0.1633111,"about_ca_system_score_codex":0.000039037095,"about_ca_system_score_gemma":0.00006006513,"threshold_uncertainty_score":0.9978325},"labels":[],"label_agreement":null},{"id":"W3095422540","doi":"10.1152/ajplung.00392.2019","title":"Depletion of pulmonary intravascular macrophages rescues inflammation-induced delayed neutrophil apoptosis in horses","year":2020,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Ex vivo; Apoptosis; Propidium iodide; Downregulation and upregulation; Inflammation; Caspase 3; Medicine; Annexin; Tumor necrosis factor alpha; Immunology; In vivo; Chemistry; Flow cytometry; Biology; Programmed cell death; Biochemistry","score_opus":0.0050836759148010155,"score_gpt":0.21047967348124325,"score_spread":0.20539599756644222,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3095422540","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99513566,0.0033733544,0.000396726,0.0006686569,0.00017526782,0.00020484712,0.000005202994,0.000016890603,0.00002340599],"genre_scores_gemma":[0.99842644,0.0009672239,0.00015483159,0.00024091847,0.00009186768,0.000009390383,0.00007700624,0.000028407543,0.000003937807],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970878,0.0011814013,0.0009270875,0.0003507847,0.00007849716,0.00037447645],"domain_scores_gemma":[0.99842757,0.00014911637,0.0008915464,0.00026046205,0.00021059002,0.000060736154],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00030269226,0.00029553572,0.00097139244,0.00029012896,0.00007886823,0.0000071297145,0.00031279196,0.00021643908,0.000046453424],"category_scores_gemma":[0.00014532988,0.00026251955,0.00027512017,0.00036939615,0.00056494965,0.00016044424,0.00011952468,0.00050977746,0.000011495256],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019463615,0.000083961124,0.00012308743,0.000072569215,0.00044894437,0.000018319332,0.00065442675,0.00033192456,0.9914991,0.00017775381,0.000034890243,0.0046086344],"study_design_scores_gemma":[0.0011212238,0.0015944088,0.01460528,0.00005469036,0.00012320704,0.000055384484,0.0006041684,0.00017937939,0.98096406,0.00020713192,0.00025383025,0.00023724309],"about_ca_topic_score_codex":0.000113289,"about_ca_topic_score_gemma":0.0000011318323,"teacher_disagreement_score":0.014482193,"about_ca_system_score_codex":0.000031595864,"about_ca_system_score_gemma":0.00009537906,"threshold_uncertainty_score":0.9999827},"labels":[],"label_agreement":null},{"id":"W3097168712","doi":"10.1073/pnas.2001948117","title":"Phosphatidylinositol-4-kinase IIα licenses phagosomes for TLR4 signaling and MHC-II presentation in dendritic cells","year":2020,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Eye Institute; National Heart, Lung, and Blood Institute; National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Cell biology; Phagosome; Acquired immune system; Antigen presentation; Biology; TLR4; Proinflammatory cytokine; Phosphatidylinositol; Pattern recognition receptor; Dendritic cell; Immune system; Signal transduction; Innate immune system; Phagocytosis; Immunology; Inflammation; T cell","score_opus":0.03503162019793635,"score_gpt":0.29158076442383546,"score_spread":0.25654914422589914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3097168712","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993368,0.0011295404,0.0000023984974,0.004989208,0.000027553997,0.0002765496,0.0000087651015,0.000007525542,0.00019042434],"genre_scores_gemma":[0.99920064,0.00007121772,0.00032401003,0.00025932782,0.000026983764,0.00001561594,7.277948e-7,0.0000027430654,0.00009871516],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99928087,0.000013310571,0.00029621096,0.00016538035,0.000121725665,0.0001225005],"domain_scores_gemma":[0.9993444,0.00025679325,0.00024853094,0.0000041458466,0.0001362988,0.000009803732],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00051652774,0.000070994814,0.00013479155,0.00010240352,0.00021040117,0.000012982229,0.00024744053,0.000087451124,0.000012866521],"category_scores_gemma":[0.000488378,0.00005302511,0.000041535503,0.00029767296,0.00036630483,0.00039023097,0.000075524615,0.00009719992,0.0000014166355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010951829,0.000023370705,0.0013852427,0.00008158048,0.000012624199,3.6748753e-9,0.0010933127,0.00004527667,0.9904025,0.0060542617,0.00032819144,0.00046408726],"study_design_scores_gemma":[0.00049571716,0.00010599091,0.008358616,0.00007147139,0.000012746564,0.0000025349384,0.0005612533,0.0003978088,0.98706883,0.0023767734,0.0004905905,0.00005769206],"about_ca_topic_score_codex":0.000005633099,"about_ca_topic_score_gemma":5.5710412e-8,"teacher_disagreement_score":0.0069733732,"about_ca_system_score_codex":0.000011137189,"about_ca_system_score_gemma":0.000025018699,"threshold_uncertainty_score":0.21623011},"labels":[],"label_agreement":null},{"id":"W3098985585","doi":"10.1136/jitc-2020-sitc2020.0824","title":"824 Modulation of TLR3 protein in response to radiation in squamous cell lung carcinoma","year":2020,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"TLR3; Cancer research; Lung cancer; Downregulation and upregulation; Radiation therapy; Medicine; Immunotherapy; Cancer; Innate immune system; Toll-like receptor; Abscopal effect; Cell; Immune system; Immunology; Biology; Oncology; Internal medicine; Gene","score_opus":0.008230781192209371,"score_gpt":0.2173612196367519,"score_spread":0.20913043844454252,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3098985585","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967842,0.00025303513,0.00035030438,0.0014742252,0.000049422568,0.00066673325,0.0000022065399,0.000021007892,0.00039885743],"genre_scores_gemma":[0.99905896,0.0000017348468,0.0000813106,0.000119169556,0.0000075781877,0.00003671584,0.00003156565,0.000008024223,0.0006549407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987875,0.0004779463,0.00037908604,0.00016564612,0.000028756518,0.00016102404],"domain_scores_gemma":[0.9996533,0.000099987716,0.000078452365,0.00012469233,0.000030504163,0.000013085802],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00041328053,0.00008748232,0.00016635473,0.00025566985,0.000020019837,0.0000041579387,0.000085710504,0.000146178,0.0001556878],"category_scores_gemma":[0.0002856856,0.000087567205,0.0000305409,0.00033488992,0.000016852238,0.000117461575,0.00003197028,0.00012361404,0.00014541812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0044393674,0.00004343374,0.0076827942,0.000028185184,0.0000023018877,0.000002860593,0.0029905587,0.0005633435,0.98228854,0.000104513085,0.00017059506,0.0016835304],"study_design_scores_gemma":[0.0015414644,0.0002516844,0.26567474,0.000011202945,0.0000024554868,9.461426e-7,0.00021194904,0.0013432475,0.7300793,0.000013223096,0.0007835623,0.000086234395],"about_ca_topic_score_codex":0.00022905813,"about_ca_topic_score_gemma":0.000030271052,"teacher_disagreement_score":0.25799194,"about_ca_system_score_codex":0.00006984755,"about_ca_system_score_gemma":0.00007215232,"threshold_uncertainty_score":0.35708869},"labels":[],"label_agreement":null},{"id":"W3106263790","doi":"10.1038/s42003-020-01397-z","title":"HACS1 signaling adaptor protein recognizes a motif in the paired immunoglobulin receptor B cytoplasmic domain","year":2020,"lang":"en","type":"article","venue":"Communications Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; University of Waterloo; York University","funders":"Canadian Institutes of Health Research","keywords":"SH3 domain; Signal transducing adaptor protein; SH2 domain; Immunoglobulin domain; WW domain; Sequence motif; Binding domain; Binding site; Chemistry; Signal transduction; Plasma protein binding; Cell biology; Biology; Receptor; Biochemistry; Receptor tyrosine kinase","score_opus":0.047351476069237404,"score_gpt":0.26161514889127735,"score_spread":0.21426367282203995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3106263790","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9417221,0.00927952,0.00064884097,0.04548075,0.00016232434,0.0011703224,0.000049885562,0.0001492589,0.001336998],"genre_scores_gemma":[0.99409026,0.00044392885,0.0031980462,0.000930336,0.000033768505,0.00036077978,0.00079102843,0.000017930333,0.0001339493],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9958042,0.0029168075,0.00061264157,0.0002829955,0.000028456088,0.00035489278],"domain_scores_gemma":[0.99777716,0.00068929,0.00022288013,0.0012098716,0.00008208242,0.000018728106],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009543303,0.00020504007,0.00031791197,0.000117049094,0.00042809543,0.000026654281,0.0016834697,0.00033973833,0.00026260657],"category_scores_gemma":[0.00057755876,0.00015833655,0.00011212671,0.0004404828,0.0004700583,0.000109331304,0.00034365067,0.00068030757,0.0011753811],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034700686,0.000108379754,0.00047044954,0.000009988415,0.00007297703,8.00391e-7,0.0031617652,0.0000026655096,0.98145485,0.0070382645,0.0011623985,0.0061704586],"study_design_scores_gemma":[0.003562232,0.0008450429,0.001805256,0.00015394077,0.000050627958,0.000053634943,0.0069808853,0.0001468786,0.32365513,0.0037995088,0.658288,0.0006588891],"about_ca_topic_score_codex":0.00009004152,"about_ca_topic_score_gemma":0.000046371722,"teacher_disagreement_score":0.6577997,"about_ca_system_score_codex":0.000053242224,"about_ca_system_score_gemma":0.00014402017,"threshold_uncertainty_score":0.9996023},"labels":[],"label_agreement":null},{"id":"W3111010928","doi":"10.1099/jgv.0.001541","title":"Differential TLR7-mediated cytokine expression by R848 in M-CSF- versus GM-CSF-derived macrophages after LCMV infection","year":2020,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Cytokine; Granulocyte macrophage colony-stimulating factor; Lymphocytic choriomeningitis; TLR7; Immunology; Macrophage colony-stimulating factor; Proinflammatory cytokine; Macrophage; Inflammation; Immune system; Innate immune system; In vitro; Toll-like receptor","score_opus":0.009135743696410136,"score_gpt":0.22731406474153665,"score_spread":0.21817832104512652,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3111010928","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942367,0.0016946261,0.0004502495,0.0017686918,0.001631276,0.00011856963,0.000014073152,0.00002273814,0.000063078354],"genre_scores_gemma":[0.99807954,0.0007432426,0.00004028583,0.00055011665,0.0002987936,0.0000100448515,0.000094058596,0.000020402314,0.00016352847],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979985,0.00066587806,0.00071342365,0.0002072488,0.000068660986,0.00034631736],"domain_scores_gemma":[0.9991679,0.00012130674,0.0004339917,0.00012410313,0.000101755766,0.00005090675],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001717695,0.0002185071,0.00048005427,0.00021670434,0.000077237295,0.000018548655,0.00017077572,0.00044478555,0.0014602224],"category_scores_gemma":[0.00021388324,0.00017972647,0.00016229079,0.00014852178,0.00012069377,0.00027597568,0.000093785064,0.0006538528,0.0001507249],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014901053,0.00010852551,0.001765661,0.000010768177,0.00012163597,0.00006972602,0.0003331931,0.000047235153,0.9762654,0.000005375882,0.0050102905,0.0013611696],"study_design_scores_gemma":[0.009091151,0.002008911,0.058261573,0.000024082186,0.000066742345,0.000109438806,0.000026521997,0.00008243916,0.9114864,0.00002092759,0.018614821,0.00020700807],"about_ca_topic_score_codex":0.0000478065,"about_ca_topic_score_gemma":0.000017012202,"teacher_disagreement_score":0.06477898,"about_ca_system_score_codex":0.00006497989,"about_ca_system_score_gemma":0.000056047513,"threshold_uncertainty_score":0.9994526},"labels":[],"label_agreement":null},{"id":"W3112129610","doi":"10.1097/md.0000000000023659","title":"Association of interleukin-6 gene polymorphisms with the risk of hepatocellular carcinoma","year":2020,"lang":"en","type":"review","venue":"Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Odds ratio; Hepatocellular carcinoma; Internal medicine; Meta-analysis; Confidence interval; Gastroenterology; Allele; Oncology; Gene; Genetics; Biology","score_opus":0.015304152121791688,"score_gpt":0.2375842294321924,"score_spread":0.22228007731040073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3112129610","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0048841694,0.993368,0.00009225701,0.0007033704,0.0002642718,0.0004729946,0.000030774994,0.000013063834,0.00017105958],"genre_scores_gemma":[0.012683944,0.98506093,0.000007362899,0.00002545149,0.00009179525,0.000026403723,0.00032648296,0.000023492215,0.001754116],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99811065,0.0007934913,0.0006725468,0.00017727553,0.00008599596,0.00016005305],"domain_scores_gemma":[0.99743766,0.00047911968,0.0016141048,0.00034606722,0.000112134156,0.000010889431],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071574235,0.00023578222,0.001455036,0.0001388271,0.000052582196,0.0000014158463,0.00028899644,0.00031693635,0.00027362627],"category_scores_gemma":[0.00027112957,0.00011525117,0.00020673386,0.00027809793,0.0002077228,0.000022515858,0.000053539716,0.0004559751,0.00006729205],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000475789,0.000078836616,0.0030673726,0.0048596147,0.006851059,0.000028279486,0.003067439,3.540977e-7,0.022896035,0.00016940596,0.017641425,0.9408644],"study_design_scores_gemma":[0.00066764065,0.00055038766,0.00030283586,0.0024404346,0.0034711347,0.00004379475,0.000064967906,0.0000015430467,0.0074304338,0.000003911255,0.98491263,0.00011029518],"about_ca_topic_score_codex":0.00022358687,"about_ca_topic_score_gemma":0.0000045939705,"teacher_disagreement_score":0.9672712,"about_ca_system_score_codex":0.000081871374,"about_ca_system_score_gemma":0.00016712707,"threshold_uncertainty_score":0.46998063},"labels":[],"label_agreement":null},{"id":"W3117279292","doi":"10.1097/shk.0000000000001704","title":"Toll-Like Receptors, Associated Biochemical Signaling Networks, and S100 Ligands","year":2020,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"Canadian Institutes of Health Research","keywords":"Innate immune system; Pattern recognition receptor; Signal transducing adaptor protein; Receptor; Signal transduction; Cell biology; Pathogen-associated molecular pattern; Biology; Toll-like receptor; Transcription factor; Intracellular; Function (biology); Immune system; Immunology; Gene; Genetics","score_opus":0.01005349217356883,"score_gpt":0.20613546034873423,"score_spread":0.1960819681751654,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117279292","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99217105,0.005007701,0.00044936454,0.0013234608,0.0005481681,0.000114735136,0.0000025462657,0.000119307304,0.00026369485],"genre_scores_gemma":[0.99799097,0.00017322859,0.000031290325,0.0006570156,0.00007645312,0.0000031940338,0.00020181517,0.000012542746,0.0008535052],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992732,0.00008320689,0.00020424183,0.000190955,0.000022494427,0.0002259304],"domain_scores_gemma":[0.9996936,0.00009425845,0.00006663964,0.00008706217,0.000031552918,0.000026894017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014579963,0.00011468326,0.00018479847,0.000026612697,0.00012757002,0.000017340262,0.000088812674,0.0002694626,0.00028291342],"category_scores_gemma":[0.00014086661,0.00010683659,0.000049223432,0.00011835232,0.00006759498,0.000058895097,0.00006463183,0.00023317106,0.00016180993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002760534,0.000017558788,0.0007303244,0.00000779251,0.0001289384,0.0000030747951,0.00048762606,0.000021861595,0.94691736,0.000048401504,0.048039466,0.0033215168],"study_design_scores_gemma":[0.0015710657,0.00028369986,0.0008940353,0.00005800583,0.000066638015,0.000020167736,0.000294783,0.00075984834,0.8981016,0.000048506663,0.09756552,0.00033607672],"about_ca_topic_score_codex":0.0000073357123,"about_ca_topic_score_gemma":6.8814126e-7,"teacher_disagreement_score":0.04952605,"about_ca_system_score_codex":0.0000193143,"about_ca_system_score_gemma":0.000025414965,"threshold_uncertainty_score":0.43566695},"labels":[],"label_agreement":null},{"id":"W3117330240","doi":"10.2139/ssrn.3600557","title":"The Type of Bacterial Lipopolysaccharides Dictates Insulin Resistance, GLP-1 and Insulin Secretion During Metabolic Endotoxemia","year":2020,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Insulin resistance; Secretion; Endocrinology; Insulin; Internal medicine; Islet; Biology; Type 2 diabetes; Medicine; Diabetes mellitus","score_opus":0.006868281090986463,"score_gpt":0.21462534837179464,"score_spread":0.20775706728080817,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3117330240","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9116293,0.087042354,0.000053011845,0.0008200571,0.0002565524,0.000109514775,0.00000248468,0.000019511986,0.000067202534],"genre_scores_gemma":[0.9283304,0.0710276,0.000008951957,0.000022099994,0.00014346569,0.0000036691947,0.00001567087,0.000012806404,0.0004353408],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983709,0.00028068185,0.00039919524,0.00013530676,0.00005027261,0.00076363684],"domain_scores_gemma":[0.99939585,0.000103947066,0.0002753499,0.000106079795,0.00009679255,0.000022012142],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000720378,0.00013047752,0.00022103127,0.000062118306,0.0003933083,0.00003334933,0.00018431232,0.00011874541,0.000054987264],"category_scores_gemma":[0.0003136183,0.00009362638,0.00006497545,0.00016387364,0.00013179431,0.00016745101,0.000050964783,0.00091818214,0.000030973508],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034599074,0.0000120253835,0.00023081018,0.000011482332,0.0002733863,9.2144774e-7,0.00069498265,0.0000013235643,0.9760181,0.011068143,0.00004665561,0.008182307],"study_design_scores_gemma":[0.0038612199,0.0006441353,0.00945498,0.00005662573,0.00014661983,0.0002999862,0.0023870121,0.0000097549555,0.9259599,0.010309752,0.04658992,0.0002801227],"about_ca_topic_score_codex":0.000019050718,"about_ca_topic_score_gemma":0.00008765317,"teacher_disagreement_score":0.050058182,"about_ca_system_score_codex":0.000066161156,"about_ca_system_score_gemma":0.0005292989,"threshold_uncertainty_score":0.39890954},"labels":[],"label_agreement":null},{"id":"W3119054513","doi":"10.1016/j.cytogfr.2021.01.001","title":"Granulocyte macrophage colony-stimulating factor has come of age: From a vaccine adjuvant to antiviral immunotherapy","year":2021,"lang":"en","type":"review","venue":"Cytokine & Growth Factor Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":66,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Immunotherapy; Immunology; Granulocyte macrophage colony-stimulating factor; Immune system; stat; Cytokine; Adjuvant; Biology; JAK-STAT signaling pathway; Signal transduction; Macrophage; Cancer immunotherapy; Innate immune system; Inflammation; Cancer research; Medicine; Cell biology; STAT3; Tyrosine kinase","score_opus":0.05944380855105983,"score_gpt":0.32786348470681853,"score_spread":0.2684196761557587,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119054513","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.006752583,0.9864665,0.00021912434,0.00004833968,0.0012532015,0.0036658247,0.0014113961,0.000103961145,0.00007905106],"genre_scores_gemma":[0.0036424836,0.9900516,0.00027238292,0.0001292314,0.00017603149,0.00030784254,0.0043101087,0.00017863854,0.0009316475],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99173033,0.0026518381,0.0034927647,0.0011004609,0.0001676272,0.00085697183],"domain_scores_gemma":[0.995278,0.0008366429,0.00212799,0.0014074813,0.00026706,0.000082799],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["metaepi_narrow","insufficient_payload"],"category_scores_codex":[0.0006403269,0.0013846145,0.0083927335,0.0005255831,0.0002953534,0.000104403785,0.0010760967,0.0010349998,0.0024028972],"category_scores_gemma":[0.00085869845,0.0010640748,0.0020673196,0.0009338586,0.00014645836,0.00023623007,0.00040350517,0.0012389565,0.0016329364],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020721379,0.00016435879,0.00012197277,0.0059506847,0.0009864661,0.00008072641,0.0005383089,1.547157e-7,0.07216824,0.000033945526,0.0018277247,0.91792023],"study_design_scores_gemma":[0.0016400495,0.00037021222,0.00070393516,0.016657129,0.00063078274,0.000041666743,0.00000953533,4.2000497e-7,0.009722749,0.0000053345543,0.9692783,0.00093988236],"about_ca_topic_score_codex":0.00025889897,"about_ca_topic_score_gemma":0.000021673666,"teacher_disagreement_score":0.96745056,"about_ca_system_score_codex":0.00026497085,"about_ca_system_score_gemma":0.00036058604,"threshold_uncertainty_score":0.99989045},"labels":[],"label_agreement":null},{"id":"W3119721218","doi":"10.1007/s10875-020-00933-0","title":"IFN-α2a Therapy in Two Patients with Inborn Errors of TLR3 and IRF3 Infected with SARS-CoV-2","year":2021,"lang":"en","type":"letter","venue":"Journal of Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":46,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mercatus Center, George Mason University; Hospital for Sick Children; Fondation pour la Recherche Médicale; Institut National de la Santé et de la Recherche Médicale; St. Giles Foundation; George Mason University; Fisher Center for Alzheimer's Research Foundation; National Institutes of Health; Yale University; National Center for Advancing Translational Sciences; National Human Genome Research Institute; Agence Nationale de la Recherche; Georgia Clinical and Translational Science Alliance; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute","keywords":"Medicine; Virology; Medical microbiology; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; IRF3; Fulminant; Immunology; Pathology; Outbreak; Infectious disease (medical specialty); Disease","score_opus":0.034855802653941614,"score_gpt":0.33788409625752824,"score_spread":0.30302829360358663,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119721218","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97479403,0.0042138114,0.000019647849,0.019437024,0.0010870821,0.0003002369,0.000011250656,0.000010632318,0.00012628712],"genre_scores_gemma":[0.937392,0.006822677,0.00038853122,0.053687323,0.0005598465,0.000019192157,0.0004899013,0.0001351008,0.00050544646],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9940138,0.002473274,0.002565245,0.00035717504,0.0001339793,0.0004565519],"domain_scores_gemma":[0.9941055,0.001485389,0.0030194889,0.0004663906,0.0009090948,0.0000141424625],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0011339627,0.00042458542,0.0021068128,0.0005791686,0.000057439895,0.000017339338,0.0004096919,0.0015516499,0.000104378785],"category_scores_gemma":[0.0006895631,0.00028043354,0.00027876892,0.00032619623,0.0009906575,0.00022012487,0.00011459734,0.0047806473,0.000016570133],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.077866524,0.0041311067,0.49627307,0.00032071408,0.023282403,0.002586894,0.0019345301,0.000017500792,0.15505944,0.00010043273,0.13150793,0.10691944],"study_design_scores_gemma":[0.039460503,0.015882256,0.54697365,0.0014262163,0.00047400032,0.00095163623,0.00011506109,0.000001155305,0.03604978,0.0001547529,0.35773692,0.0007740474],"about_ca_topic_score_codex":0.00010448028,"about_ca_topic_score_gemma":0.00006592359,"teacher_disagreement_score":0.226229,"about_ca_system_score_codex":0.00004675782,"about_ca_system_score_gemma":0.0006273712,"threshold_uncertainty_score":0.9999648},"labels":[],"label_agreement":null},{"id":"W3119728301","doi":"10.1101/2021.01.09.426034","title":"Double stranded RNA drives innate immune responses, sickness behavior and cognitive impairment dependent on dsRNA length, IFNAR1 expression and age","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"National Institutes of Health; Wellcome Trust","keywords":"Innate immune system; Immunology; Immune system; Inflammation; IRF7; RNA silencing; Biology; Disease; Cognitive decline; Neuroscience; RNA; Medicine; RNA interference; Gene; Dementia; Internal medicine; Genetics","score_opus":0.0127099205529357,"score_gpt":0.23497839042416696,"score_spread":0.22226846987123125,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3119728301","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.987942,0.009074059,0.000062688305,0.00008969337,0.0010404746,0.0014345221,0.00014177359,0.00020481076,0.000010023241],"genre_scores_gemma":[0.9969554,0.0020981792,0.00014340386,0.000057211604,0.00006707586,0.00047929952,0.000013532326,0.00009569458,0.00009018493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964491,0.0008193135,0.0007733939,0.0011549703,0.00016532975,0.00063790777],"domain_scores_gemma":[0.9979351,0.0002531721,0.00052897254,0.00082506816,0.00035538457,0.000102277394],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00081107806,0.00073471095,0.0008819153,0.00041300862,0.00045475696,0.00027040474,0.00030064487,0.0010508616,0.0001177914],"category_scores_gemma":[0.00014106948,0.00072563207,0.00015181696,0.00017821032,0.0003500983,0.0002681117,0.00073697115,0.0012854661,0.000039915685],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003505906,0.00038647404,0.0010093843,0.00020504769,0.00036133843,0.00031921893,0.00025334273,0.0000025030506,0.99381286,0.00006576799,0.000017800487,0.000060341146],"study_design_scores_gemma":[0.004301586,0.00023583038,0.20400155,0.0011591406,0.00029257007,6.9736905e-7,0.000105064595,0.0000017254873,0.7890289,9.899888e-7,0.00023352209,0.0006384162],"about_ca_topic_score_codex":0.00009433549,"about_ca_topic_score_gemma":0.0000056681847,"teacher_disagreement_score":0.20478396,"about_ca_system_score_codex":0.00014381738,"about_ca_system_score_gemma":0.0004084433,"threshold_uncertainty_score":0.99951947},"labels":[],"label_agreement":null},{"id":"W3120761852","doi":"10.1038/s41598-020-79145-w","title":"Ultra-purification of Lipopolysaccharides reveals species-specific signalling bias of TLR4: importance in macrophage function","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research; Cumming School of Medicine, University of Calgary; Crohn's and Colitis Canada; Canada Foundation for Innovation","keywords":"TLR4; Macrophage; Function (biology); Biology; Cell biology; Microbiology; Computational biology; Signal transduction; Biochemistry; In vitro","score_opus":0.026378113374927684,"score_gpt":0.23600712260359874,"score_spread":0.20962900922867106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120761852","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881896,0.0067096534,0.00041411884,0.00004681138,0.0033784045,0.0002046338,0.000004341308,0.00002197097,0.0010304869],"genre_scores_gemma":[0.9931632,0.00018140486,0.00012062549,0.0000065034083,0.000020975258,0.000010280009,0.00025314774,0.000010138876,0.006233706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975936,0.00023747912,0.0013030358,0.00049789564,0.00012874481,0.00023923676],"domain_scores_gemma":[0.99783987,0.00011429361,0.00095265894,0.00068840734,0.0003899823,0.000014773537],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0022730958,0.00012773265,0.0003305596,0.00029912335,0.00012272892,0.000034490306,0.00010851616,0.00016227602,0.0010128974],"category_scores_gemma":[0.00040609873,0.00012421119,0.00012781812,0.00079588074,0.00027533906,0.00021543668,0.000025783826,0.00016216384,0.000039965533],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000087518725,0.000099023266,0.011843089,0.000049805378,0.00002892612,0.00005602616,0.00041918166,0.000048413818,0.983941,0.00047709176,0.001254328,0.001695563],"study_design_scores_gemma":[0.00019367022,0.000032627417,0.025778636,0.00010420819,0.000015215377,0.00011196197,0.00039090865,0.000002460419,0.96138394,0.0014317003,0.01045004,0.00010466165],"about_ca_topic_score_codex":0.000021686987,"about_ca_topic_score_gemma":0.000017250313,"teacher_disagreement_score":0.022557124,"about_ca_system_score_codex":0.000048657726,"about_ca_system_score_gemma":0.00017250219,"threshold_uncertainty_score":0.99990034},"labels":[],"label_agreement":null},{"id":"W3120857783","doi":"10.14740/jocmr4409","title":"Correlation of Immunoglobulins and Lymphocytes Levels With the Clinical and Microbiological Response of Septic Patients With Gram-Negative Bacteremia","year":2021,"lang":"en","type":"article","venue":"Journal of Clinical Medicine Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Bacteremia; Sepsis; Medicine; Septic shock; Immunology; Antibiotics; Immune system; Antibody; Pathogen; Systemic inflammatory response syndrome; Microbiology; Biology","score_opus":0.09308121055823773,"score_gpt":0.4222641221159397,"score_spread":0.32918291155770196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3120857783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946671,0.0022741253,0.00011767432,0.0024872867,0.00016490858,0.0002178794,0.0000061637884,0.0000024120845,0.000062417814],"genre_scores_gemma":[0.9983618,0.0010366376,0.00024464424,0.00006493168,0.00006366054,0.0000016056279,0.000008204812,0.000008519766,0.00020997316],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9919797,0.0057027163,0.0016705858,0.00020050305,0.0002225954,0.00022390303],"domain_scores_gemma":[0.97743934,0.019189894,0.0009719532,0.00024341945,0.0020984123,0.000056951198],"candidate_categories":["metaresearch","sts"],"consensus_categories":[],"category_scores_codex":[0.012009973,0.00012955276,0.00086167746,0.00014831121,0.00011778849,0.000007998151,0.00019050133,0.00030976319,0.000114808565],"category_scores_gemma":[0.013951994,0.00005951215,0.00009598819,0.0003021044,0.003759589,0.00010669435,0.000121870326,0.0011399959,0.0000036607569],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.102598935,0.0007707285,0.7635194,0.00009724783,0.0012684852,0.00005285276,0.0014282764,0.0000053838185,0.096063,0.00018046932,0.0012798796,0.03273532],"study_design_scores_gemma":[0.010316222,0.010920848,0.96092063,0.0006952826,0.00012167636,0.00019623802,0.0011536737,0.0000052320843,0.0142536145,0.00009840481,0.0012471324,0.00007102945],"about_ca_topic_score_codex":0.000013764867,"about_ca_topic_score_gemma":0.000005360474,"teacher_disagreement_score":0.19740123,"about_ca_system_score_codex":0.00002223882,"about_ca_system_score_gemma":0.00070056383,"threshold_uncertainty_score":0.9989516},"labels":[],"label_agreement":null},{"id":"W3123698822","doi":"10.4049/jimmunol.1901288","title":"Identification and Characterization of Zebrafish Tlr4 Coreceptor Md-2","year":2021,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of General Medical Sciences; NIH Office of the Director; National Institutes of Health; American Heart Association","keywords":"Zebrafish; Biology; Innate immune system; Danio; Amniote; Gene; TLR4; Genetics; Cell biology; Immune system; Vertebrate","score_opus":0.007423134554255508,"score_gpt":0.2159507187473485,"score_spread":0.208527584193093,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3123698822","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908162,0.0066708135,0.0006221272,0.00095052464,0.00082818297,0.000056822835,0.0000035651694,0.000005189635,0.000046606492],"genre_scores_gemma":[0.99470264,0.004464195,0.000013439382,0.000057462457,0.00002749081,9.499721e-7,0.000033019653,0.000006524675,0.0006942671],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986945,0.0005681379,0.0005402052,0.0000573294,0.00003102337,0.000108841225],"domain_scores_gemma":[0.99860114,0.00016668059,0.0006867758,0.00017557782,0.0003644085,0.000005403207],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006394906,0.000072804134,0.00022066636,0.00009775802,0.000090180205,0.000007763805,0.00015135256,0.00013505938,0.00022646146],"category_scores_gemma":[0.00019383641,0.000052251395,0.000053112526,0.000116511386,0.00021011296,0.00016261192,0.0000517615,0.00021611233,0.000036042067],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043945847,0.000040573363,0.00012876185,0.000008140304,0.00020158291,0.0000015097881,0.00082793273,5.97882e-7,0.98993576,0.0004755659,0.00023985676,0.007700276],"study_design_scores_gemma":[0.00063287176,0.00015840113,0.04053106,0.000030135661,0.000070004884,0.0008284242,0.00042899005,0.0000015091495,0.9492501,0.00013179208,0.007889718,0.000046996895],"about_ca_topic_score_codex":0.000004074416,"about_ca_topic_score_gemma":0.0000011637001,"teacher_disagreement_score":0.04068565,"about_ca_system_score_codex":0.000016183241,"about_ca_system_score_gemma":0.00008542951,"threshold_uncertainty_score":0.24795942},"labels":[],"label_agreement":null},{"id":"W3127703279","doi":"10.3390/ijms22031491","title":"N-palmitoyl-D-glucosamine, A Natural Monosaccharide-Based Glycolipid, Inhibits TLR4 and Prevents LPS-Induced Inflammation and Neuropathic Pain in Mice","year":2021,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":41,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"TLR4; Chemistry; Glucosamine; Inflammation; Pharmacology; Receptor; Lipid A; In vivo; Lipopolysaccharide; Biochemistry; Immunology; Medicine; Biology","score_opus":0.008922397735793649,"score_gpt":0.24827878228395503,"score_spread":0.23935638454816138,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3127703279","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99369055,0.00301119,0.00083709206,0.0016490071,0.00069370784,0.00007458367,0.0000011971438,0.000005017757,0.000037631326],"genre_scores_gemma":[0.9992185,0.00014743321,0.00033714078,0.00022007622,0.000037088554,0.0000025354102,0.000007530367,0.0000044459935,0.000025231178],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99832803,0.0007433793,0.00044274706,0.00017498464,0.00016773689,0.00014309573],"domain_scores_gemma":[0.99907917,0.0002546209,0.0003049481,0.000054906057,0.0002865876,0.000019772015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016732281,0.00010552656,0.00015506483,0.00033442868,0.000072424074,0.00008856441,0.00022309841,0.00008071602,0.0000117022555],"category_scores_gemma":[0.001178743,0.00009310492,0.000050654235,0.00019009018,0.0001140875,0.0003655165,0.00007195125,0.00023967767,0.0000033403028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013855903,0.000030490026,0.0011831698,0.0000069353146,0.00003263914,0.0001274905,0.00021223033,0.00008028044,0.95917773,0.00020887544,0.00000806464,0.038793545],"study_design_scores_gemma":[0.0012544682,0.00019646219,0.007500099,0.00019447536,0.000011800304,0.00070350635,0.0001723847,0.0011649386,0.98808634,0.00030797563,0.0003023354,0.00010523757],"about_ca_topic_score_codex":0.00002022856,"about_ca_topic_score_gemma":0.000017171114,"teacher_disagreement_score":0.03868831,"about_ca_system_score_codex":0.000035363373,"about_ca_system_score_gemma":0.00024074112,"threshold_uncertainty_score":0.37967086},"labels":[],"label_agreement":null},{"id":"W3128165650","doi":"10.3390/pharmaceutics13020205","title":"The Synergistic Effects of Sulfated Lactosyl Archaeol Archaeosomes When Combined with Different Adjuvants in a Murine Model","year":2021,"lang":"en","type":"article","venue":"Pharmaceutics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Adjuvant; Ovalbumin; Immune system; Antigen; Chemistry; Immunopotentiator; TLR3; TLR9; Immunology; Pharmacology; Biology; Biochemistry; Toll-like receptor; Innate immune system; Gene expression","score_opus":0.015233883794495407,"score_gpt":0.2631054672386502,"score_spread":0.24787158344415477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3128165650","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99404854,0.0039947904,0.00050773186,0.0007478792,0.00026094005,0.00031651778,0.000007310503,0.000029165349,0.00008710109],"genre_scores_gemma":[0.99714303,0.0012814165,0.000039689072,0.00007443257,0.000007975281,0.00004110996,0.0000722155,0.000017635792,0.001322486],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874264,0.0003704277,0.00031759957,0.00017149265,0.00006310532,0.00033472257],"domain_scores_gemma":[0.9987019,0.0007790772,0.00012006229,0.00027325915,0.00010473129,0.000021017666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016104341,0.00017087317,0.0002938585,0.000082594124,0.000100169265,0.000007104881,0.0001814284,0.000085326225,0.00003219674],"category_scores_gemma":[0.00017716858,0.00011087421,0.00005141754,0.00013128335,0.000263239,0.00004786299,0.00014269842,0.00032131677,0.000014376921],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026359956,0.00030616237,0.0030715023,0.00022601389,0.00031880176,0.00006037984,0.0021733467,0.00059786165,0.9829861,0.0020098893,0.00007260355,0.005541374],"study_design_scores_gemma":[0.00436725,0.0001652154,0.0034895325,0.00013560631,0.00008650678,0.000016546086,0.00009843998,0.007070296,0.9825071,0.0010517462,0.00086686754,0.00014491026],"about_ca_topic_score_codex":0.000015278347,"about_ca_topic_score_gemma":0.00008601702,"teacher_disagreement_score":0.0064724344,"about_ca_system_score_codex":0.000036038924,"about_ca_system_score_gemma":0.00010274255,"threshold_uncertainty_score":0.4521319},"labels":[],"label_agreement":null},{"id":"W3131333668","doi":"10.3389/fimmu.2021.630427","title":"The Aryl Hydrocarbon Receptor Attenuates Acute Cigarette Smoke-Induced Airway Neutrophilia Independent of the Dioxin Response Element","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; McGill University; McGill University Health Centre","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Canada Foundation for Innovation","keywords":"Aryl hydrocarbon receptor; Neutrophilia; Inflammation; Immunology; Medicine; COPD; Pharmacology; Chemistry; Internal medicine; Transcription factor; Biochemistry","score_opus":0.007122393017670045,"score_gpt":0.21753460011296216,"score_spread":0.21041220709529213,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3131333668","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9737065,0.0125147505,0.000053090593,0.006643657,0.0064065326,0.00042953872,0.000015320864,0.000033199052,0.00019744213],"genre_scores_gemma":[0.9947329,0.0017332326,0.00004248254,0.00020701847,0.00002843887,0.0000987436,0.000062938176,0.000029675863,0.0030645311],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99608576,0.0019019837,0.00083177706,0.00041883922,0.00010799063,0.00065364304],"domain_scores_gemma":[0.9979642,0.00038023107,0.00040230606,0.0010944825,0.00014436105,0.000014428748],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011774908,0.0002879491,0.00050802686,0.00019147547,0.00038716837,0.000021352775,0.0008111832,0.0005207755,0.00010825631],"category_scores_gemma":[0.00046336502,0.00019813958,0.00023866285,0.00046873325,0.00050281297,0.00010713668,0.000435957,0.0009005178,0.000047647063],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0046434477,0.00009568664,0.004312997,0.000005914519,0.00095783407,0.000015937323,0.000690748,0.000009095724,0.9772201,0.0004656958,0.0051655467,0.006416956],"study_design_scores_gemma":[0.0018971039,0.0002864056,0.058157306,0.000060920174,0.0000805859,0.000062458064,0.0014001365,0.000010076283,0.89835703,0.0003931173,0.03908241,0.00021242422],"about_ca_topic_score_codex":0.000075834156,"about_ca_topic_score_gemma":0.000038208338,"teacher_disagreement_score":0.078863084,"about_ca_system_score_codex":0.00025186272,"about_ca_system_score_gemma":0.00035866266,"threshold_uncertainty_score":0.8079898},"labels":[],"label_agreement":null},{"id":"W3138812076","doi":"10.1073/pnas.2012529118","title":"Immunoediting role for major vault protein in apoptotic signaling induced by bacterial <i>N</i> -acyl homoserine lactones","year":2021,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"FP7 Ideas: European Research Council; Azrieli Foundation; United States-Israel Binational Science Foundation","keywords":"Cell biology; Signal transduction; Homoserine; Biology; Apoptosis; Tumor necrosis factor alpha; Cell signaling; Chemistry; Quorum sensing; Biochemistry; Immunology","score_opus":0.02097945863706688,"score_gpt":0.2695508775688064,"score_spread":0.24857141893173954,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3138812076","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997584,0.00034568942,8.264413e-7,0.0012760378,0.000052648,0.0002899138,0.00001729306,0.000008820838,0.00042479878],"genre_scores_gemma":[0.9992482,0.000008512335,0.00033023863,0.00006020819,0.00004434393,0.00004640933,0.0000045779097,0.000004775025,0.00025270772],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902034,0.000023708542,0.0004242042,0.00019349733,0.000149319,0.00018895193],"domain_scores_gemma":[0.9991695,0.0001558778,0.00038992084,0.000008851059,0.00026924597,0.00000655362],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011541282,0.000093721115,0.00018668977,0.00010370405,0.00019596773,0.000021851905,0.0003735588,0.0001477993,0.000041762753],"category_scores_gemma":[0.0009085146,0.00007197645,0.00006961559,0.0004170243,0.00022980323,0.00040508425,0.00010181535,0.00017361015,0.0000023010027],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012313575,0.000044346663,0.00013694,0.000051494808,0.000019897572,3.3699046e-9,0.00017419954,0.000003021648,0.99517596,0.0037404408,0.00008602391,0.00044456616],"study_design_scores_gemma":[0.000630595,0.000057873152,0.0027752903,0.0001477777,0.000008090093,0.000006820437,0.00043758302,0.000030401105,0.99149615,0.0035919123,0.0007362357,0.000081249054],"about_ca_topic_score_codex":0.0000115550465,"about_ca_topic_score_gemma":1.4893921e-7,"teacher_disagreement_score":0.0036797575,"about_ca_system_score_codex":0.000028696984,"about_ca_system_score_gemma":0.0000705803,"threshold_uncertainty_score":0.29351145},"labels":[],"label_agreement":null},{"id":"W3139003502","doi":"10.15252/embr.202051280","title":"Toll-like receptor 4 is activated by platinum and contributes to cisplatin-induced ototoxicity","year":2021,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":50,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Women and Children's Health Research Institute; Canada Research Chairs; Government of Canada; Canadian Institutes of Health Research; Kids With Cancer Society; Alberta Cancer Foundation; International Society for Advancement of Cytometry","keywords":"Ototoxicity; Cisplatin; TLR4; Toll-like receptor; In vivo; Cancer research; Lipopolysaccharide; Pharmacology; Chemistry; Receptor; Immunology; Medicine; Biology; Innate immune system; Internal medicine; Biochemistry; Chemotherapy","score_opus":0.00845607913448342,"score_gpt":0.23521105681290455,"score_spread":0.22675497767842112,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139003502","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948062,0.0009495524,0.000078204954,0.0016956801,0.00087380555,0.00031265113,0.000017548242,0.00007453538,0.0011918329],"genre_scores_gemma":[0.98747164,0.000029831404,0.000056223646,0.00085242727,0.000019260904,0.000035424764,0.00030559817,0.00001621915,0.011213366],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986243,0.0001649485,0.000477877,0.0003890399,0.000047018697,0.0002968151],"domain_scores_gemma":[0.99911886,0.00013724115,0.00020362726,0.00035525172,0.00015096458,0.000034078363],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030588632,0.00017454072,0.00032658273,0.00007082857,0.00020548479,0.000037874717,0.000052032723,0.00029359,0.00096172426],"category_scores_gemma":[0.00044862734,0.00016736177,0.00005927994,0.00018893143,0.000038898812,0.00012375118,0.00009822398,0.00021211384,0.0001607129],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014194474,0.000042125524,0.0012505586,0.000007931913,0.00013330807,0.00006593796,0.00031201018,2.6119477e-7,0.9195799,0.000031890282,0.07574723,0.002686885],"study_design_scores_gemma":[0.00040846562,0.00006208466,0.0032421378,0.000036647572,0.000017653594,0.00033312786,0.0001091849,8.314546e-7,0.78983176,0.00005664246,0.20575175,0.00014972534],"about_ca_topic_score_codex":0.00005231161,"about_ca_topic_score_gemma":0.0000071872373,"teacher_disagreement_score":0.13000453,"about_ca_system_score_codex":0.00004753825,"about_ca_system_score_gemma":0.000111578236,"threshold_uncertainty_score":0.99995154},"labels":[],"label_agreement":null},{"id":"W3139656459","doi":"10.1016/j.celrep.2021.108931","title":"Influence of the microenvironment on modulation of the host response by typhoid toxin","year":2021,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre; Ontario Institute for Cancer Research","funders":"Kempestiftelserna; Umeå Universitet; Vetenskapsrådet; Cancer Research Foundation in Northern Sweden; Cancerfonden","keywords":"DNA damage; Immune system; Inflammatory bowel disease; Biology; Inflammation; Colitis; Microbiology; Crosstalk; Context (archaeology); In vivo; Proinflammatory cytokine; Immunology; Salmonella; Bacteria; DNA; Disease; Genetics; Medicine","score_opus":0.0038450959279699454,"score_gpt":0.18696865368567317,"score_spread":0.18312355775770323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3139656459","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99812496,0.00073779206,0.0000040967716,0.00037423224,0.00022207673,0.00014508351,0.000004630862,0.000004094385,0.00038303717],"genre_scores_gemma":[0.99019545,0.000038226168,0.000003909863,0.00010369139,0.000002478732,0.0000044837147,0.000010751708,0.0000055118385,0.009635499],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989996,0.0003782613,0.0003425877,0.00013308562,0.00005136183,0.000095091236],"domain_scores_gemma":[0.99889773,0.000097596225,0.00037386233,0.0005833725,0.000042907835,0.000004506722],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033056573,0.00007148215,0.00010873745,0.000017679373,0.00007968681,0.0000023793598,0.000091823116,0.000097765085,0.00008050685],"category_scores_gemma":[0.00023008729,0.000044836877,0.00008054651,0.00008691452,0.0001235884,0.000029989646,0.00008056805,0.000111119836,0.00001563614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023052661,0.00006707098,0.0027478917,0.000008072057,0.000014589861,0.0000040713635,0.00020697092,0.0005452391,0.99518186,0.000007748994,0.0008437415,0.00014223249],"study_design_scores_gemma":[0.00011821277,0.000028648796,0.24350761,0.00003033261,0.000009313358,0.000044670964,0.000029869925,7.904059e-7,0.73705286,0.000014913777,0.019129686,0.000033111995],"about_ca_topic_score_codex":0.000016998572,"about_ca_topic_score_gemma":0.0000015143366,"teacher_disagreement_score":0.258129,"about_ca_system_score_codex":0.000032672993,"about_ca_system_score_gemma":0.00008449092,"threshold_uncertainty_score":0.18283947},"labels":[],"label_agreement":null},{"id":"W3143753348","doi":"10.1111/ajt.16584","title":"Toll-like receptor 3 is an endogenous sensor of cell death and a potential target for induction of long-term cardiac transplant survival","year":2021,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"London Health Sciences Centre; Western University","funders":"Canadian Institutes of Health Research","keywords":"Necroptosis; Medicine; Programmed cell death; Inflammation; Transplantation; Apoptosis; TLR3; Mitochondrial permeability transition pore; Cancer research; Immunology; Cell biology; Toll-like receptor; Biology; Internal medicine; Immune system; Innate immune system","score_opus":0.01536268681641093,"score_gpt":0.23458651882012121,"score_spread":0.2192238320037103,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3143753348","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9881805,0.0006328588,0.01018181,0.000052874777,0.0005544641,0.00012774159,0.0002486279,0.0000041994367,0.000016931852],"genre_scores_gemma":[0.99507016,0.0028102226,0.0016768854,0.0000128945485,0.000042901942,0.0000026188184,0.0003363137,0.00001166954,0.000036336285],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988031,0.0003535434,0.00051402027,0.00012152914,0.00006780986,0.00014004298],"domain_scores_gemma":[0.99900043,0.00010166841,0.00051713636,0.00008976223,0.00026743836,0.000023546334],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029835885,0.00011130394,0.00041150692,0.00012843085,0.000060094728,0.0000061750848,0.00006521074,0.00008237045,0.000051991006],"category_scores_gemma":[0.000006549381,0.00010380695,0.0001606927,0.00008739542,0.00011139243,0.00017548198,0.000002507393,0.000119157594,0.0000012699221],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033507338,0.00011259855,0.00420481,0.00014844064,0.00027183816,0.000018438846,0.0039096167,0.00003122039,0.9796903,0.000010115043,0.0000058958144,0.008245984],"study_design_scores_gemma":[0.0016358476,0.001477612,0.02473557,0.00007596182,0.00039826825,0.00073826365,0.0010771042,0.0000034372447,0.96969044,0.0000075458747,0.00005856021,0.00010136604],"about_ca_topic_score_codex":0.000041187475,"about_ca_topic_score_gemma":0.000002969188,"teacher_disagreement_score":0.02053076,"about_ca_system_score_codex":0.000014845803,"about_ca_system_score_gemma":0.00012238257,"threshold_uncertainty_score":0.42331246},"labels":[],"label_agreement":null},{"id":"W3144640256","doi":"10.6000/1927-520x.2013.02.01.2","title":"Bacterial DNA Induced TNF-alpha Expression in Buffaloes (Murrah) in Comparison to that of Cross Breed Cattle","year":2013,"lang":"en","type":"article","venue":"Journal of Buffalo Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Breed; Biology; Immune system; Peripheral blood mononuclear cell; Incubation period; Real-time polymerase chain reaction; Veterinary medicine; Animal science; Gene expression; Andrology; Incubation; Immunology; Gene; Genetics; In vitro; Biochemistry; Medicine","score_opus":0.027282240699729284,"score_gpt":0.30346565064534353,"score_spread":0.27618340994561424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3144640256","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99785393,0.00031671431,0.00007090593,0.00024664408,0.0010621344,0.00019111368,0.0000013754087,0.0000044999215,0.0002526489],"genre_scores_gemma":[0.9996428,0.000015696956,0.00019048584,0.000033282566,0.000030639778,0.000004781944,0.0000017731926,0.000005522899,0.0000750494],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983531,0.00019030574,0.00078948535,0.00017065991,0.0001520367,0.0003443874],"domain_scores_gemma":[0.9988301,0.00013620702,0.00051422144,0.00020284558,0.0002745237,0.000042111715],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014638385,0.000120441175,0.00038680833,0.0006644353,0.00008979192,0.000061957384,0.0005888511,0.00014477842,0.00023063818],"category_scores_gemma":[0.00047329144,0.00009348865,0.000060563747,0.00054010726,0.00029475288,0.0011180975,0.00012760547,0.0003122078,0.00008219677],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036012678,0.00011868575,0.02135686,0.000007796203,0.000004556624,0.000002046922,0.0020566478,0.000055693967,0.9722558,0.000025083173,0.00033936714,0.0034173168],"study_design_scores_gemma":[0.0008228477,0.00021295542,0.391371,0.00012690791,0.0000019592233,0.000024062429,0.00046213242,0.000008200371,0.60648876,0.000033756372,0.00038161143,0.00006578],"about_ca_topic_score_codex":0.00047510062,"about_ca_topic_score_gemma":0.000052041574,"teacher_disagreement_score":0.37001416,"about_ca_system_score_codex":0.0001063907,"about_ca_system_score_gemma":0.00027344495,"threshold_uncertainty_score":0.38123566},"labels":[],"label_agreement":null},{"id":"W3151332003","doi":"","title":"Progress of the Study on Endotoxin Tolerance Mechanisms","year":2006,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CAE (Canada)","funders":"","keywords":"TLR4; Signal transduction; Proinflammatory cytokine; Biology; Cell biology; Signal transducing adaptor protein; TLR2; Immunology; PI3K/AKT/mTOR pathway; Mechanism (biology); Receptor; Transcription factor; Inflammation; Genetics; Gene","score_opus":0.006905401994501181,"score_gpt":0.22205262120565633,"score_spread":0.21514721921115515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3151332003","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98475516,0.00016898103,0.0001319791,0.0001382705,0.00022735087,0.00046980084,0.0000011958685,0.000051238465,0.014056049],"genre_scores_gemma":[0.9823466,5.9497023e-7,0.00002401087,0.000028203061,0.000006265554,0.000027202002,0.0000026417663,0.000007163275,0.017557314],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99951845,0.00013863965,0.00014069435,0.0000815371,0.00002411658,0.00009655028],"domain_scores_gemma":[0.99967563,0.000024148023,0.00006805509,0.00021404478,0.000016594287,0.0000015181656],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000112404516,0.000059625938,0.00008888976,0.000032529384,0.000055672244,0.0000027535934,0.00012389314,0.000049691942,0.00013899646],"category_scores_gemma":[0.000006887984,0.000034554454,0.00003669405,0.00006977937,0.000051839917,0.000019653055,0.000026650809,0.000059692942,0.000085824264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013630724,0.00038162473,0.0026056503,0.0000029507235,0.000028498942,6.3272694e-7,0.00012548189,0.0000043954446,0.96636236,0.026469221,0.0026225161,0.001260364],"study_design_scores_gemma":[0.0006854232,0.0002047099,0.040531844,0.000009976755,0.0000068768345,0.0000031706636,0.00017593858,0.0000011996209,0.95503837,0.00026614818,0.0030335214,0.00004284798],"about_ca_topic_score_codex":0.00009735909,"about_ca_topic_score_gemma":0.000020583122,"teacher_disagreement_score":0.037926193,"about_ca_system_score_codex":0.0000052963283,"about_ca_system_score_gemma":0.000009882979,"threshold_uncertainty_score":0.15219139},"labels":[],"label_agreement":null},{"id":"W3156045381","doi":"","title":"Assessment of neutrophil function in canine cancer patients undergoing chemotherapy and correlation with neutrophil numbers.","year":2021,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Chemotherapy; Absolute neutrophil count; Lymphoma; Medicine; Respiratory burst; Neutrophil to lymphocyte ratio; Internal medicine; Canine Lymphoma; Neutrophile; Phagocytosis; Cancer; Gastroenterology; Immunology; Oncology; Lymphocyte; Neutropenia; Inflammation","score_opus":0.0063960173014738,"score_gpt":0.2065155490603684,"score_spread":0.2001195317588946,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3156045381","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976571,0.00070669805,0.00011005293,0.00033485892,0.00026099474,0.00027313372,0.0000029712255,0.0000121830435,0.0006420067],"genre_scores_gemma":[0.9986902,0.00040727117,0.000018142813,0.00009398749,0.000012291415,0.00017735928,0.00008704479,0.000009667969,0.0005040682],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99934477,0.00010808936,0.00019645946,0.00015253937,0.000034129444,0.00016400829],"domain_scores_gemma":[0.99963075,0.000052962325,0.00012491488,0.00009379893,0.000087770735,0.000009827586],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000106130996,0.0000845315,0.0001516201,0.00007210912,0.00004549855,0.0000075539338,0.000027533657,0.00008959923,0.00005499496],"category_scores_gemma":[0.000017111732,0.000074954296,0.000018432542,0.00015556226,0.00004071043,0.0001241666,0.000016327149,0.00011788253,0.0000013615712],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00088020234,0.00022550898,0.90979373,0.000057454592,0.00019581351,0.0000030286205,0.0002688912,0.00058560533,0.02665103,0.0007366046,0.00013169867,0.060470425],"study_design_scores_gemma":[0.0030497992,0.00008716737,0.9869237,0.000025327974,0.000025722744,0.000004482418,0.000059989437,0.000024366618,0.0089960825,0.000027577064,0.0006969844,0.00007880247],"about_ca_topic_score_codex":0.00020054776,"about_ca_topic_score_gemma":0.00038775694,"teacher_disagreement_score":0.07712996,"about_ca_system_score_codex":0.0000871624,"about_ca_system_score_gemma":0.00008843883,"threshold_uncertainty_score":0.30565473},"labels":[],"label_agreement":null},{"id":"W3158835433","doi":"10.3389/fimmu.2021.662063","title":"Microbial Phagocytic Receptors and Their Potential Involvement in Cytokine Induction in Macrophages","year":2021,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":99,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"The Scarborough Hospital; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; University of Toronto","keywords":"Cytokine; Receptor; Immunology; Microbiology; Phagocytosis; Macrophage; Biology; Chemistry; In vitro; Biochemistry","score_opus":0.01358850643616101,"score_gpt":0.24469557907553813,"score_spread":0.23110707263937713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3158835433","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.01561151,0.9770615,0.00005597454,0.00005017002,0.0062467307,0.0008700013,0.00004326484,0.000028315746,0.000032511598],"genre_scores_gemma":[0.00138963,0.9953945,0.00012807932,0.000024361345,0.00005664929,0.00022470171,0.0021670046,0.000054158332,0.000560897],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99527097,0.0019170612,0.0013355489,0.0007338101,0.00003287721,0.0007097577],"domain_scores_gemma":[0.9989714,0.0001152232,0.000421549,0.0004375078,0.000040373343,0.0000139598815],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0006204455,0.0006004077,0.0023280997,0.0018685228,0.00008059844,0.000028405091,0.00037298334,0.0016536536,0.00029279463],"category_scores_gemma":[0.000129857,0.00055278745,0.00023965142,0.000762292,0.00032092177,0.00017235697,0.00031559842,0.0016279859,0.00007178306],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026967633,0.00022661555,0.00010456505,0.0011616574,0.0005259376,0.00010952217,0.001012466,0.0000040896707,0.008828575,0.000036210866,0.0026471335,0.98507357],"study_design_scores_gemma":[0.0026553245,0.00016567107,0.0002466451,0.005684361,0.000102294274,0.00030310673,0.0013232752,0.0000024593878,0.003993864,0.000056062683,0.98486704,0.0005999184],"about_ca_topic_score_codex":0.0002527529,"about_ca_topic_score_gemma":0.00012325456,"teacher_disagreement_score":0.98447365,"about_ca_system_score_codex":0.0007723426,"about_ca_system_score_gemma":0.00042572178,"threshold_uncertainty_score":0.9996924},"labels":[],"label_agreement":null},{"id":"W3159572149","doi":"10.1182/blood.2020010463","title":"TLR8 gain of function: a tall surprise","year":2021,"lang":"en","type":"letter","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Gain of function; Function (biology); Medicine; Biology; Cell biology; Genetics; Phenotype","score_opus":0.010696019344260486,"score_gpt":0.1997835176172399,"score_spread":0.1890874982729794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159572149","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34999612,0.14100257,0.0006750233,0.44085923,0.013123483,0.0018661111,0.0003433692,0.0005653528,0.051568758],"genre_scores_gemma":[0.1269466,0.002291577,0.0002168943,0.47131494,0.0054496154,0.00026227342,0.024630897,0.00032168697,0.36856553],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986909,0.0003643142,0.00038391186,0.00025374515,0.000045678342,0.0002614682],"domain_scores_gemma":[0.9990101,0.00015156322,0.00024352546,0.00046133462,0.00012834684,0.0000051147313],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00017630881,0.00020462534,0.00041338394,0.00013853308,0.000061262916,0.000010322595,0.00017428836,0.0012012353,0.0020555363],"category_scores_gemma":[0.000080479105,0.00019562643,0.00021848115,0.000112913454,0.0000917192,0.00004703191,0.000074495234,0.00093244377,0.0006194474],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007491531,0.000105698695,0.000039095285,0.00013238293,0.0007024916,0.00012378099,0.000096749776,4.7645915e-7,0.17632256,0.000023720027,0.82178354,0.00059457315],"study_design_scores_gemma":[0.00111238,0.00012677973,0.00013209866,0.0000990969,0.0002987736,0.0001390215,0.00002521966,7.897008e-8,0.17536977,0.000034509503,0.8224917,0.00017058828],"about_ca_topic_score_codex":0.000029379056,"about_ca_topic_score_gemma":0.0000025055394,"teacher_disagreement_score":0.31699678,"about_ca_system_score_codex":0.000011689304,"about_ca_system_score_gemma":0.00015657465,"threshold_uncertainty_score":0.9988567},"labels":[],"label_agreement":null},{"id":"W3159929043","doi":"10.1038/s41598-021-88386-2","title":"CpG-ODN induced antimicrobial immunity in neonatal chicks involves a substantial shift in serum metabolic profiles","year":2021,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Waterloo; University of Alberta; University of Saskatchewan","funders":"Western Economic Diversification Canada; Genome Alberta; Canada Foundation for Innovation; Chicken Farmers of Saskatchewan; Alberta Livestock and Meat Agency; Natural Sciences and Engineering Research Council of Canada; Canadian Poultry Research Council","keywords":"Immune system; CpG Oligodeoxynucleotide; Betaine; Choline; Immunity; Innate immune system; Biology; Internal medicine; Chemistry; Endocrinology; Biochemistry; Immunology; Medicine; DNA methylation","score_opus":0.014224841203981112,"score_gpt":0.24117983206332347,"score_spread":0.22695499085934234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159929043","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9897914,0.0025748215,0.00001440945,0.00024412872,0.006665538,0.00034920356,0.000009039772,0.00005479163,0.00029668983],"genre_scores_gemma":[0.99808574,0.00003646213,0.000032694545,0.000036195805,0.000029959765,0.000035875317,0.00056953955,0.00001787126,0.0011556599],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99694437,0.0006591416,0.00096145563,0.00072499627,0.00011181574,0.0005982159],"domain_scores_gemma":[0.9986216,0.00006384762,0.00031016016,0.0008415363,0.00013664125,0.000026233525],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020948623,0.0002353293,0.0004503722,0.000580789,0.00031525714,0.00015680733,0.00021936982,0.00034835513,0.0005769464],"category_scores_gemma":[0.00040289163,0.00023233853,0.00013510277,0.001175717,0.00030668086,0.0004728321,0.00023373579,0.0006144575,0.0001315841],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012268184,0.0001438273,0.01705979,0.000024030143,0.00003829504,0.0007495088,0.0034317283,0.0000078631,0.9748187,0.0002601725,0.0004072235,0.0029361788],"study_design_scores_gemma":[0.00075215363,0.00001805765,0.09917213,0.00009419076,0.000013609159,0.0005012753,0.0005514965,0.000004074693,0.88444513,0.00083766354,0.013367901,0.00024233406],"about_ca_topic_score_codex":0.00041141605,"about_ca_topic_score_gemma":0.0015090144,"teacher_disagreement_score":0.09037359,"about_ca_system_score_codex":0.00005705216,"about_ca_system_score_gemma":0.00078816793,"threshold_uncertainty_score":0.947449},"labels":[],"label_agreement":null},{"id":"W3159991196","doi":"10.1111/aji.13454","title":"IFN‐alpha receptor deficiency enhances host resistance to oral <i>Salmonella enterica</i> serovar Typhimurium infection during murine pregnancy","year":2021,"lang":"en","type":"article","venue":"American Journal of Reproductive Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa; National Research Council Canada","funders":"National Institutes of Health","keywords":"Biology; Salmonella enterica; Placenta; Pregnancy; Spleen; Inflammation; Salmonella infection; Immunology; Tumor necrosis factor alpha; Fetus; Gestation; Salmonella; Bacteria","score_opus":0.0063312425125451035,"score_gpt":0.23653078572238015,"score_spread":0.23019954320983504,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3159991196","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9788615,0.015888141,0.00056087755,0.001973329,0.0020859747,0.00020691668,0.0000067647716,0.000048560538,0.00036789977],"genre_scores_gemma":[0.99178886,0.0031152053,0.001162986,0.00008540131,0.00016442154,0.000021407284,0.000016790422,0.000035657573,0.0036092706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967712,0.0010032598,0.0009302581,0.00062943826,0.0001054685,0.00056038407],"domain_scores_gemma":[0.9969954,0.00013305392,0.0011043529,0.0006944355,0.00103145,0.000041304425],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00053116283,0.000309654,0.0007755912,0.00028683344,0.00028135328,0.000027486401,0.00033590512,0.00013250978,0.00025933282],"category_scores_gemma":[0.00095782726,0.00029092576,0.00022309969,0.0009885657,0.00060312724,0.00039338,0.00018582527,0.00062070345,0.00030640163],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026185457,0.00026035157,0.0020536669,0.000025285814,0.00040360948,0.000057636822,0.0011955322,0.0000124396,0.97823244,0.00006385352,0.0003968412,0.014679809],"study_design_scores_gemma":[0.00091176154,0.0014230266,0.059033435,0.0002446315,0.00006420065,0.0012423978,0.0009752629,5.9630054e-8,0.90696,0.0000369311,0.02882595,0.00028234156],"about_ca_topic_score_codex":0.00008470146,"about_ca_topic_score_gemma":0.000025180203,"teacher_disagreement_score":0.071272425,"about_ca_system_score_codex":0.00020635019,"about_ca_system_score_gemma":0.00021710648,"threshold_uncertainty_score":0.9999543},"labels":[],"label_agreement":null},{"id":"W3160540043","doi":"10.1016/j.it.2021.04.008","title":"Stepping up Th1 immunity to control phagosomal bacteria","year":2021,"lang":"en","type":"letter","venue":"Trends in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Salmonella enterica; Cytotoxic T cell; Biology; Immune system; Immunology; Effector; Acquired immune system; Immunity; Interferon; Microbiology; Salmonella; Pathogen; Virology; Bacteria","score_opus":0.019765453211139716,"score_gpt":0.2601955308235225,"score_spread":0.24043007761238278,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3160540043","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4076548,0.028377619,0.0002414633,0.5230061,0.028350627,0.0011857871,0.00036465045,0.0006098473,0.01020914],"genre_scores_gemma":[0.35443702,0.00089356065,0.0002401771,0.43508646,0.002165819,0.0009170918,0.021869157,0.00044604583,0.18394467],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9937782,0.002646865,0.0012174726,0.0008609241,0.00008420053,0.0014123026],"domain_scores_gemma":[0.9973132,0.0005976377,0.0004307625,0.0014602952,0.00017736205,0.000020724572],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0005544582,0.00077429914,0.0015567323,0.0017589502,0.00026300224,0.000064675165,0.0010366607,0.003363503,0.00784773],"category_scores_gemma":[0.00025533637,0.0008028365,0.00038695795,0.00075911655,0.00032864755,0.00019282919,0.00042593616,0.004614152,0.0023372],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011561741,0.00009810985,0.00007497722,0.000045049463,0.0012689664,0.00044015073,0.0010505547,0.00000402932,0.48653656,0.000120973775,0.4680689,0.04113553],"study_design_scores_gemma":[0.0042621256,0.00038036823,0.007985945,0.00021722424,0.00012385115,0.00046878017,0.00019242252,0.0000013574916,0.037557915,0.00003698515,0.94796497,0.0008080341],"about_ca_topic_score_codex":0.00047362596,"about_ca_topic_score_gemma":0.000096798576,"teacher_disagreement_score":0.4798961,"about_ca_system_score_codex":0.00033700746,"about_ca_system_score_gemma":0.00025028337,"threshold_uncertainty_score":0.9994423},"labels":[],"label_agreement":null},{"id":"W3162018478","doi":"10.1016/j.acvdsp.2021.04.091","title":"TLR3 promotes venous thrombosis through neutrophil recruitment","year":2021,"lang":"en","type":"article","venue":"Archives of Cardiovascular Diseases Supplements","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Jewish General Hospital","funders":"","keywords":"Medicine; Venous thrombosis; Thrombosis; Internal medicine","score_opus":0.029337170515953782,"score_gpt":0.2689693704338315,"score_spread":0.23963219991787774,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162018478","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8287371,0.16012144,0.00272071,0.0005308613,0.0010111304,0.0017959472,0.00074098865,0.00013962828,0.004202238],"genre_scores_gemma":[0.99068725,0.0059541613,0.0006297617,0.000057463778,0.000048513135,0.00017755183,0.002116927,0.000031027,0.0002973585],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980271,0.0006381721,0.0004172438,0.00038947287,0.00013797781,0.0003900584],"domain_scores_gemma":[0.99881464,0.00012788015,0.000111315894,0.0008445595,0.00007110499,0.000030518124],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00010848073,0.00021926478,0.0005874423,0.0000781518,0.00020082595,0.000016878117,0.00023791353,0.00006777169,0.00063447515],"category_scores_gemma":[0.00008311219,0.0002097608,0.0010843722,0.00013783727,0.00020826649,0.00016063747,0.00022100327,0.0001143304,0.000100668934],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012243986,0.0042240457,0.010869842,0.0008820139,0.054827992,0.00022556573,0.0059172185,0.0006153726,0.7123285,0.0040337807,0.0041812533,0.20067003],"study_design_scores_gemma":[0.003316827,0.00035277393,0.03173494,0.00014572345,0.0017274405,0.00004993152,0.000491844,0.0000045641464,0.61248946,0.0017945056,0.34754187,0.0003501358],"about_ca_topic_score_codex":0.00006888966,"about_ca_topic_score_gemma":0.000002148084,"teacher_disagreement_score":0.3433606,"about_ca_system_score_codex":0.000022528668,"about_ca_system_score_gemma":0.00015443479,"threshold_uncertainty_score":0.8553797},"labels":[],"label_agreement":null},{"id":"W3162908834","doi":"10.1097/01.hj.0000752296.37530.ef","title":"Role of a Classical Innate Immune Receptor in Chemo-induced Hearing Loss","year":2021,"lang":"en","type":"article","venue":"The Hearing Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Natural Sciences and Engineering Research Council of Canada","funders":"","keywords":"Ototoxicity; Cisplatin; Medicine; Hearing loss; Cancer; Adverse effect; Chemotherapy; Immunology; Oncology; Internal medicine; Cancer research; Audiology","score_opus":0.0183914264219071,"score_gpt":0.25106059314024876,"score_spread":0.23266916671834165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3162908834","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99415517,0.0029957378,0.000018454948,0.0016741824,0.00038291147,0.000058615842,4.6250383e-7,0.000012341493,0.0007021507],"genre_scores_gemma":[0.99874496,0.0002119774,0.000060015605,0.000041405154,0.00005923094,0.0000029244547,0.0000045300817,0.000011488969,0.0008634784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99866396,0.0004190903,0.0004684084,0.000108444015,0.000052369636,0.00028775082],"domain_scores_gemma":[0.99939024,0.00012637027,0.00015629904,0.0002166677,0.00009577087,0.0000146567245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009571067,0.00009961254,0.00025229977,0.00009974942,0.0001865361,0.000026425116,0.00018116695,0.0001498317,0.00030918658],"category_scores_gemma":[0.0002116138,0.0000749402,0.00010692531,0.00019895745,0.00007495072,0.000113704475,0.0001258903,0.0008901149,0.00013059707],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002724227,0.00005782572,0.0010152851,0.0000073163933,0.000063728185,0.000010675373,0.0012338861,0.000015756934,0.9856553,0.00040248537,0.00005051775,0.011214764],"study_design_scores_gemma":[0.0009926588,0.00006048637,0.04428875,0.00015760987,0.000011704783,0.00091566035,0.00066649634,0.000028657898,0.9472791,0.0003962099,0.005115225,0.00008745147],"about_ca_topic_score_codex":0.00005460374,"about_ca_topic_score_gemma":0.000007869947,"teacher_disagreement_score":0.043273464,"about_ca_system_score_codex":0.000071588605,"about_ca_system_score_gemma":0.00017267597,"threshold_uncertainty_score":0.3867156},"labels":[],"label_agreement":null},{"id":"W3164308799","doi":"10.1016/j.biopha.2021.111784","title":"Interaction between non-coding RNAs and Toll-like receptors","year":2021,"lang":"en","type":"review","venue":"Biomedicine & Pharmacotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centennial College","funders":"Shahid Beheshti University of Medical Sciences","keywords":"TRIF; microRNA; Innate immune system; Biology; Receptor; Immune system; Signal transduction; Toll-like receptor; Pattern recognition receptor; Long non-coding RNA; Computational biology; Immunology; Gene; RNA; Cell biology; Genetics","score_opus":0.04887537566951046,"score_gpt":0.37896044138590473,"score_spread":0.3300850657163943,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164308799","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00019730414,0.99305254,0.00031646874,0.00017609577,0.0052887993,0.0006307698,0.000014882076,0.000080030455,0.00024310104],"genre_scores_gemma":[0.00012140348,0.9930236,0.000023869372,0.00016790924,0.0007002243,0.0000746054,0.0013679261,0.00007045973,0.0044500064],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99768615,0.0005328243,0.00083966926,0.00049186184,0.00006878686,0.00038073395],"domain_scores_gemma":[0.9987443,0.00036945302,0.00048672603,0.00028771238,0.0000639662,0.000047815058],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00051891425,0.00050809747,0.0016955411,0.00057436276,0.00018243854,0.0000323203,0.00022752318,0.00053164136,0.001777775],"category_scores_gemma":[0.000023454355,0.00039680093,0.0003050632,0.0004000948,0.000170145,0.00015318736,0.00006545846,0.00067909027,0.00033551472],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000044073753,0.000029407194,0.0000059570884,0.0012064968,0.0009429513,0.000010569816,0.00021682327,8.649151e-9,0.018812342,0.0000052813057,0.022932703,0.9557934],"study_design_scores_gemma":[0.0012814697,0.00015954187,0.0000057376233,0.006164775,0.0007381771,0.00019257022,0.00007799203,4.7496223e-7,0.0077238423,0.0000011049926,0.98329246,0.00036186943],"about_ca_topic_score_codex":0.000030261088,"about_ca_topic_score_gemma":5.4730305e-7,"teacher_disagreement_score":0.96035975,"about_ca_system_score_codex":0.00012960973,"about_ca_system_score_gemma":0.0001768241,"threshold_uncertainty_score":0.99984837},"labels":[],"label_agreement":null},{"id":"W3164669447","doi":"10.1159/000515738","title":"TLR7 Ligation Inhibits TLR8 Responsiveness in IL-27-Primed Human THP-1 Monocytes and Macrophages","year":2021,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"TLR7; Cytokine; Biology; Chemokine; Proinflammatory cytokine; Toll-like receptor; Cell biology; TLR9; Immunology; Gene expression; Innate immune system; Inflammation; Immune system","score_opus":0.014423795072758571,"score_gpt":0.26899942310060826,"score_spread":0.25457562802784967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3164669447","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988414,0.01018281,0.000026884023,0.0006534253,0.00039718,0.00008890609,0.000004062099,0.0000109815355,0.00022173506],"genre_scores_gemma":[0.99772877,0.0013202206,0.000071711205,0.000084363,0.000027213404,0.0000020640616,0.000030285615,0.000012790461,0.0007225825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99757516,0.0012896865,0.0007316278,0.00011791206,0.000062163315,0.00022343094],"domain_scores_gemma":[0.99855036,0.00030809228,0.00047445906,0.00022541526,0.0004201832,0.000021500848],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001373502,0.0001556876,0.00037679973,0.00035584113,0.00022223433,0.000044166492,0.00017531654,0.00023048479,0.000104934305],"category_scores_gemma":[0.0006528266,0.00014093028,0.00008932522,0.00029108924,0.00014244062,0.0004986379,0.00013593449,0.0007413186,0.000026510093],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008060088,0.000113313334,0.001979173,0.00002739832,0.000098038516,0.00007504768,0.0013797777,0.000011634663,0.98964,0.00028010472,0.00013347366,0.005456033],"study_design_scores_gemma":[0.0017762332,0.00020963713,0.12548645,0.00022536202,0.000026402187,0.00046487135,0.00087605853,0.0000020842772,0.867458,0.0006412309,0.0027095794,0.00012407302],"about_ca_topic_score_codex":0.00008454111,"about_ca_topic_score_gemma":0.000037016474,"teacher_disagreement_score":0.123507276,"about_ca_system_score_codex":0.00008677224,"about_ca_system_score_gemma":0.00019655416,"threshold_uncertainty_score":0.574697},"labels":[],"label_agreement":null},{"id":"W3165001906","doi":"10.1111/jeb.13876","title":"Pathogen‐mediated selection favours the maintenance of innate immunity gene polymorphism in a widespread wild ungulate","year":2021,"lang":"en","type":"article","venue":"Journal of Evolutionary Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Balancing selection; Capreolus; Innate immune system; Genetics; Major histocompatibility complex; Natural selection; Evolutionary biology; Gene; Roe deer; Selection (genetic algorithm); Immune system; Zoology","score_opus":0.008178472322209345,"score_gpt":0.2264966889608422,"score_spread":0.21831821663863288,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165001906","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9816171,0.015117131,0.0003733077,0.0018031782,0.0008586872,0.0000944129,0.000024566601,0.0000081695625,0.00010343972],"genre_scores_gemma":[0.99813294,0.0010802747,0.0001751452,0.00014159297,0.000049437593,0.0000039309602,0.00010992153,0.000008423271,0.00029835608],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9974484,0.0013038719,0.00080170145,0.0001267214,0.000042413583,0.00027693505],"domain_scores_gemma":[0.9982579,0.00043795095,0.0006745938,0.00018311343,0.00043134482,0.000015119419],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008301713,0.00013455053,0.00035952567,0.00025887904,0.00012325727,0.0000034870025,0.00022954031,0.00029572978,0.00015798157],"category_scores_gemma":[0.00076194335,0.0000955513,0.00015610023,0.00045296003,0.00029138848,0.00013796373,0.00007501139,0.0005674847,0.000024391196],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090000225,0.00012988015,0.015644765,0.000006055003,0.00017491449,0.000024231465,0.00023374424,0.000099174315,0.9799213,0.00089587306,0.0008461644,0.001123929],"study_design_scores_gemma":[0.0027996383,0.0007068836,0.59281504,0.00015146502,0.00007312274,0.004328934,0.0004475275,0.00009445512,0.37720844,0.0025374205,0.01863262,0.000204433],"about_ca_topic_score_codex":0.00010918713,"about_ca_topic_score_gemma":0.000030289044,"teacher_disagreement_score":0.6027128,"about_ca_system_score_codex":0.00012257267,"about_ca_system_score_gemma":0.00045189823,"threshold_uncertainty_score":0.3896469},"labels":[],"label_agreement":null},{"id":"W3165509857","doi":"10.1016/j.molimm.2021.05.008","title":"Identification of imidazoquinoline derivative (IQD) interacting sites of porcine TLR8 and the underlying species specificity","year":2021,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Key Research and Development Program of China; Priority Academic Program Development of Jiangsu Higher Education Institutions; National Natural Science Foundation of China","keywords":"Innate immune system; Receptor; Biology; Binding site; Intracellular; Mutant; Cell biology; Immune system; Agonist; Signal transducing adaptor protein; Chemistry; Signal transduction; Biochemistry; Immunology; Gene","score_opus":0.018378939942972534,"score_gpt":0.25625191094678273,"score_spread":0.2378729710038102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3165509857","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9809289,0.012914005,0.0042661293,0.0009453257,0.00024726085,0.00016205959,0.000005541628,0.00001533009,0.0005154739],"genre_scores_gemma":[0.9987611,0.00054138334,0.00009403517,0.000041128136,0.0000067761953,0.000008245647,0.000093182956,0.000009421953,0.00044473636],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99828017,0.0006429286,0.00065231224,0.00020369691,0.000042274274,0.0001786033],"domain_scores_gemma":[0.998345,0.00045368343,0.0005007972,0.00036771252,0.00032792593,0.000004868275],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046844795,0.00013326663,0.0003852814,0.00012109139,0.00011399831,0.000011902454,0.00016024712,0.00016426345,0.00015527842],"category_scores_gemma":[0.0008327168,0.00010689432,0.00010297813,0.00020756817,0.0007099554,0.00009116991,0.00017521533,0.0002530598,0.00001562362],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005857214,0.000048417343,0.00033304383,0.000027016338,0.0003781513,0.0000054937286,0.0013542367,0.000015788522,0.9743122,0.021478588,0.000015966592,0.0014454079],"study_design_scores_gemma":[0.0014694995,0.00006288635,0.017290937,0.000043411394,0.000060506787,0.00012084347,0.0025299976,0.00002720407,0.9768609,0.00070481974,0.00074022374,0.0000887666],"about_ca_topic_score_codex":0.00003773597,"about_ca_topic_score_gemma":0.000007565351,"teacher_disagreement_score":0.020773768,"about_ca_system_score_codex":0.000020963405,"about_ca_system_score_gemma":0.000052514733,"threshold_uncertainty_score":0.4359024},"labels":[],"label_agreement":null},{"id":"W3166815846","doi":"10.1096/fasebj.2021.35.s1.05502","title":"NF‐κB and Glucocorticoid Receptor Synergize to Enable Pro‐inflammatory Signaling via Toll‐like Receptor 2 in Pulmonary Epithelial Cells","year":2021,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"TLR2; Chromatin immunoprecipitation; Glucocorticoid receptor; A549 cell; Innate immune system; Toll-like receptor; NF-κB; Inflammation; Transcription factor; Receptor; Cell biology; Biology; Pattern recognition receptor; Immune system; Cancer research; Chemistry; Immunology; Glucocorticoid; Promoter; Gene expression; Cell; Biochemistry","score_opus":0.007894651208449347,"score_gpt":0.20761241163102026,"score_spread":0.19971776042257092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3166815846","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931441,0.00320208,0.00019646838,0.0010241546,0.0017287573,0.00033581874,0.0000101090445,0.000026306268,0.00033218184],"genre_scores_gemma":[0.9902924,0.000645182,0.00023364766,0.0004081275,0.00023583799,0.0000256478,0.000033010234,0.000032516706,0.008093682],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976821,0.000829178,0.00061458384,0.0002688872,0.00009365067,0.0005115875],"domain_scores_gemma":[0.999042,0.00025980728,0.00021409777,0.0002933841,0.00013190489,0.00005882684],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011678521,0.00022147184,0.00033146844,0.00017152914,0.0003718854,0.000075898126,0.00025017257,0.00022109925,0.0017149894],"category_scores_gemma":[0.00012259356,0.00016897659,0.00011263339,0.00022049506,0.00009930154,0.00023533864,0.00014208506,0.0007306913,0.0012081352],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00090055895,0.00006566474,0.00029610752,0.000023656192,0.000090173206,0.0000855562,0.0010301911,0.00018761717,0.9881318,0.000046559482,0.0010626188,0.008079482],"study_design_scores_gemma":[0.0008784295,0.00012929944,0.00029938482,0.00012820848,0.000030126226,0.0008257479,0.00096016336,0.00003037391,0.9591047,0.0001005314,0.037295006,0.0002180273],"about_ca_topic_score_codex":0.00002010247,"about_ca_topic_score_gemma":0.000007240902,"teacher_disagreement_score":0.036232386,"about_ca_system_score_codex":0.00011568926,"about_ca_system_score_gemma":0.0002781657,"threshold_uncertainty_score":0.99956954},"labels":[],"label_agreement":null},{"id":"W3167860552","doi":"10.1089/vim.2020.0308","title":"The Role of Type I Interferon Signaling in Regulating Cytokine Production and Cell Survival in Bone Marrow-Derived Macrophages","year":2021,"lang":"en","type":"article","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Cytokine; TLR7; Immunology; Biology; TLR4; Tumor necrosis factor alpha; Interferon; Toll-like receptor; Lipopolysaccharide; Receptor; Imiquimod; Inflammation; Innate immune system; Immune system","score_opus":0.0068271359981276585,"score_gpt":0.21280615414083354,"score_spread":0.2059790181427059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3167860552","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9699319,0.028953614,0.0000036639192,0.00026000437,0.00050722173,0.000118866636,0.0000010637046,0.000013522169,0.00021011884],"genre_scores_gemma":[0.9983572,0.00086032995,0.0000388864,0.000007481939,0.000014893948,0.000008497981,0.000027863633,0.000010623472,0.0006742644],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99850106,0.0005988538,0.00042067232,0.00020873453,0.000021676378,0.0002490257],"domain_scores_gemma":[0.9994134,0.00015326984,0.00014467999,0.0002066614,0.00007819149,0.0000038214785],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043841556,0.00011391689,0.00025103326,0.00012504258,0.00009309212,0.000009922142,0.000089876485,0.00018327814,0.000044647924],"category_scores_gemma":[0.00027551435,0.00009627332,0.000029277702,0.00020689121,0.00019808406,0.00009443789,0.0001244539,0.00029550088,0.000017469141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011136106,0.00004745114,0.0025247592,0.000012287369,0.000031994285,0.000006161575,0.0007513917,0.000028079206,0.9842926,0.000269062,0.000004478635,0.010918124],"study_design_scores_gemma":[0.0006792832,0.0001986386,0.018183934,0.000054774573,0.000007950169,0.000037646998,0.0019091327,0.000018529901,0.97769016,0.0003651997,0.000765851,0.00008891511],"about_ca_topic_score_codex":0.00014677868,"about_ca_topic_score_gemma":0.00015551287,"teacher_disagreement_score":0.028425233,"about_ca_system_score_codex":0.00003676199,"about_ca_system_score_gemma":0.00005009418,"threshold_uncertainty_score":0.39259118},"labels":[],"label_agreement":null},{"id":"W3170040276","doi":"10.1096/fasebj.2021.35.s1.04657","title":"The Role of CSF1R in Early Tooth Development","year":2021,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; University of British Columbia","funders":"","keywords":"Cementum; Osteoclast; Cell biology; Morphogenesis; Dental alveolus; Biology; Mineralized tissues; Odontoblast; Bone remodeling; Dentin; Pathology; Receptor; Dentistry; Endocrinology; Medicine; Biochemistry; Gene","score_opus":0.007392346061670398,"score_gpt":0.2091024941962621,"score_spread":0.2017101481345917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3170040276","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9903218,0.007523132,0.000027384262,0.0003902113,0.00021808385,0.000035214427,3.7817594e-7,0.0000029830533,0.0014808071],"genre_scores_gemma":[0.99762505,0.00025332937,0.00002608462,0.000029974364,0.000016362625,0.0000020824325,0.000002556902,0.000003285877,0.0020412467],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992225,0.00030542206,0.00024962125,0.000041837317,0.000030511586,0.00015011555],"domain_scores_gemma":[0.9995687,0.00014404161,0.00010192083,0.00011882024,0.0000609909,0.000005517809],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006697868,0.000048656064,0.000080776445,0.000030156816,0.0002676489,0.000019444931,0.00015945226,0.000047703685,0.00012461969],"category_scores_gemma":[0.00007518565,0.000025817013,0.000039689457,0.00007746912,0.00006370195,0.00004793001,0.000041479347,0.0002617666,0.00010792572],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013816007,0.000019212692,0.0022152308,8.858619e-7,0.000058797566,0.0000058401138,0.0021834858,0.0000054616085,0.9531683,0.0007786726,0.00010419512,0.041321814],"study_design_scores_gemma":[0.00032818574,0.00002254541,0.03850736,0.000021030835,0.000005393915,0.00019930181,0.0012192403,0.000001285646,0.91172105,0.00042436805,0.04751673,0.000033524113],"about_ca_topic_score_codex":0.0000107344,"about_ca_topic_score_gemma":0.000022752303,"teacher_disagreement_score":0.047412533,"about_ca_system_score_codex":0.00002498142,"about_ca_system_score_gemma":0.00020650632,"threshold_uncertainty_score":0.20585659},"labels":[],"label_agreement":null},{"id":"W3172207088","doi":"10.1101/2021.06.16.448779","title":"Bacterial factors drive the differential targeting of Guanylate Binding Proteins to <i>Francisella</i> and <i>Shigella</i>","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Francisella; Shigella flexneri; Shigella; Francisella tularensis; Cell biology; Microbiology; Bacteria; Genetics; Escherichia coli; Salmonella","score_opus":0.007924368923832302,"score_gpt":0.19465280415834357,"score_spread":0.18672843523451127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3172207088","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9936745,0.0016613284,0.0005161677,0.00015316797,0.0026329495,0.0011064034,0.00013740841,0.00011346656,0.0000045932916],"genre_scores_gemma":[0.99900496,0.00027770922,0.00028513736,0.00004230192,0.00018370325,0.00010601625,0.00000746183,0.00007865255,0.000014047596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972126,0.00055759127,0.00078082003,0.0007492053,0.00012289308,0.0005769176],"domain_scores_gemma":[0.99796647,0.00017503653,0.00060522853,0.0008275211,0.0003580563,0.00006770277],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00056258123,0.0005519215,0.00077278237,0.00022262638,0.0003655443,0.00017198986,0.0005033055,0.00072977104,0.00019332176],"category_scores_gemma":[0.00036176696,0.00045110736,0.00020730298,0.00030093864,0.00021740489,0.00013006262,0.0008617366,0.0008471699,0.00004699185],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022580034,0.000059202983,0.0014393294,0.00019565025,0.00031835074,0.000006340748,0.00022968557,0.000010248154,0.9973256,0.00005635048,0.00012876162,0.000004658107],"study_design_scores_gemma":[0.0005803355,0.00009542345,0.021723568,0.0003766632,0.00013756643,3.4379756e-8,0.000051472685,0.000005580387,0.972461,3.3629075e-7,0.004092083,0.0004759472],"about_ca_topic_score_codex":0.000101220285,"about_ca_topic_score_gemma":0.0000036651104,"teacher_disagreement_score":0.024864633,"about_ca_system_score_codex":0.00008743243,"about_ca_system_score_gemma":0.0003293395,"threshold_uncertainty_score":0.99979407},"labels":[],"label_agreement":null},{"id":"W3172266806","doi":"10.1096/fasebj.24.1_supplement.110.5","title":"Increase toll‐like receptor 4 expression after ischemia/reperfusion contributes to myocardial apoptosis: role of PI3Kγ/NFκB pathway","year":2010,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"TLR4; Apoptosis; PI3K/AKT/mTOR pathway; Myocyte; Phosphorylation; Cardiac myocyte; Signal transduction; Receptor; Cell biology; Chemistry; Medicine; Internal medicine; Endocrinology; Biology; Biochemistry","score_opus":0.0032977542871893916,"score_gpt":0.19562499313537626,"score_spread":0.19232723884818687,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3172266806","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958942,0.0012046658,0.00010043933,0.00051934854,0.0015955595,0.00022538487,0.000026717655,0.000024318371,0.00040936144],"genre_scores_gemma":[0.9985021,0.000085723645,0.00011848838,0.0002620223,0.0001968625,0.00002916531,0.000031626587,0.00001648893,0.00075752527],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985403,0.00041903582,0.00046628367,0.00016006522,0.00008489217,0.00032942038],"domain_scores_gemma":[0.9989517,0.00019662558,0.00023897248,0.00037368113,0.0001860796,0.000052944655],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010730551,0.0001801106,0.00028908812,0.00014200488,0.00034707013,0.000037630587,0.00033221816,0.00028306682,0.001300882],"category_scores_gemma":[0.00032410244,0.00011451464,0.00019492944,0.00011465734,0.0001315613,0.00017083282,0.00016046468,0.0007753589,0.00042384048],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030170612,0.00006542639,0.0008623672,0.000004084299,0.00008435326,0.0000018312369,0.00072456757,0.0000026466857,0.98484373,0.000048693742,0.004766283,0.0055789277],"study_design_scores_gemma":[0.0011029595,0.00014447341,0.00088675163,0.00009684104,0.00004441388,0.00012704248,0.00044283544,0.0000019793688,0.95597607,0.00008893716,0.04095447,0.00013323977],"about_ca_topic_score_codex":0.000035099045,"about_ca_topic_score_gemma":0.0000049415744,"teacher_disagreement_score":0.03618819,"about_ca_system_score_codex":0.00003060713,"about_ca_system_score_gemma":0.00013030431,"threshold_uncertainty_score":0.9996121},"labels":[],"label_agreement":null},{"id":"W3173750665","doi":"10.1096/fasebj.20.4.a744","title":"Pivotal role of phospholipase C in cardiac TNF‐α expression during endotoxemia","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Phospholipase C; Tumor necrosis factor alpha; Sepsis; Lipopolysaccharide; Gene knockdown; Medicine; Endocrinology; Phospholipase; Downregulation and upregulation; Internal medicine; Tyrosine kinase; Stimulation; Pharmacology; Immunology; Biology; Enzyme; Receptor; Biochemistry; Gene","score_opus":0.0036189142108339636,"score_gpt":0.19379870026951151,"score_spread":0.19017978605867755,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3173750665","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99314225,0.0050142836,0.0000079140245,0.00004639807,0.00028340565,0.00008889342,0.00000375328,0.000009681831,0.0014034314],"genre_scores_gemma":[0.99893224,0.00011721242,0.000013443244,0.0000059519175,0.00007343809,0.0000048536767,0.000011222164,0.000007754313,0.0008338759],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990122,0.00031348577,0.00033424146,0.00007440359,0.000043221662,0.00022246255],"domain_scores_gemma":[0.9995506,0.00007419559,0.00017876535,0.00015399969,0.000033624987,0.000008824409],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044452617,0.000092001195,0.00017734329,0.00010066433,0.00017632387,0.000011467634,0.0001571543,0.0000970368,0.0002059831],"category_scores_gemma":[0.000030928586,0.00006153177,0.00011114008,0.000082751605,0.00007606221,0.000117485084,0.00004505661,0.00036933733,0.00006861124],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004295446,0.000038000922,0.004239207,0.0000040081163,0.00002018669,0.000007902156,0.00039034043,0.000083612045,0.9935138,0.000118590586,0.00020175635,0.0009530058],"study_design_scores_gemma":[0.00089585455,0.00003490387,0.030912437,0.000059354872,0.000012279042,0.00017516923,0.00043523088,0.0000027945,0.96619153,0.00028957147,0.0009238903,0.00006697772],"about_ca_topic_score_codex":0.00011893471,"about_ca_topic_score_gemma":0.0000037890015,"teacher_disagreement_score":0.027322307,"about_ca_system_score_codex":0.000041884006,"about_ca_system_score_gemma":0.000044036853,"threshold_uncertainty_score":0.25091928},"labels":[],"label_agreement":null},{"id":"W3174240851","doi":"10.3389/fimmu.2021.650808","title":"The Inhibitory Receptor CLEC12A Regulates PI3K-Akt Signaling to Inhibit Neutrophil Activation and Cytokine Release","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":32,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier universitaire de Québec","funders":"National Institute of General Medical Sciences; National Institute of Environmental Health Sciences; Canadian Institutes of Health Research; Centre Hospitalier Universitaire de Québec; National Institute on Alcohol Abuse and Alcoholism; Arthritis Society","keywords":"PI3K/AKT/mTOR pathway; Protein kinase B; Signal transduction; Cell biology; Phosphorylation; p38 mitogen-activated protein kinases; Inflammation; Chemistry; Kinase; Biology; MAPK/ERK pathway; Immunology","score_opus":0.005028278023706537,"score_gpt":0.19721587964360687,"score_spread":0.19218760161990034,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174240851","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97824204,0.013774812,0.00078012067,0.0043483893,0.0023155056,0.00029093534,0.0000047511717,0.00006205533,0.00018139975],"genre_scores_gemma":[0.99408656,0.0012989505,0.00083584985,0.0003832145,0.00008608861,0.00007255598,0.0001430535,0.000032863583,0.0030608443],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99786466,0.00068473344,0.0005135903,0.000400545,0.000045090186,0.0004913888],"domain_scores_gemma":[0.9989977,0.0002655645,0.0001572923,0.00041655893,0.00014045344,0.000022451175],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000449474,0.00021915401,0.00034327758,0.00026233142,0.0004450487,0.00004331844,0.00019528366,0.00039758245,0.000069052425],"category_scores_gemma":[0.00055844395,0.00019228914,0.00006766227,0.00040137803,0.0003175096,0.00020048955,0.00019207358,0.0005252022,0.00011088902],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012553753,0.00004455018,0.0005750215,0.0000093544095,0.00013851038,0.0000080009195,0.0006786608,0.00003358312,0.95215356,0.000635062,0.011113967,0.033354335],"study_design_scores_gemma":[0.0011512786,0.00017059679,0.003728125,0.00007986717,0.000015329762,0.000042686494,0.0013604166,0.0000079237225,0.8407714,0.00055629096,0.15191832,0.00019779021],"about_ca_topic_score_codex":0.00004319616,"about_ca_topic_score_gemma":0.000011756668,"teacher_disagreement_score":0.14080435,"about_ca_system_score_codex":0.00015641001,"about_ca_system_score_gemma":0.00014376738,"threshold_uncertainty_score":0.78413236},"labels":[],"label_agreement":null},{"id":"W3174673823","doi":"10.2139/ssrn.3307530","title":"Toll-Like Receptor 2 Expression on c-kit+ Cells Tracks the Emergence of Definitive Hematopoietic Progenitors in a Pre-Circulation Embryo","year":2018,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children; Lunenfeld-Tanenbaum Research Institute","funders":"","keywords":"Haematopoiesis; Embryo; Toll-like receptor; Circulation (fluid dynamics); Cell biology; Progenitor cell; Toll; Biology; Immunology; Receptor; Stem cell; Innate immune system; Genetics; Physics","score_opus":0.007133121820249026,"score_gpt":0.23572014507566946,"score_spread":0.22858702325542044,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174673823","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9956795,0.0021701376,0.0005823758,0.00016796029,0.00074761163,0.0003059883,0.0000018235451,0.00001363881,0.00033098686],"genre_scores_gemma":[0.9982684,0.0008879852,0.000013827458,0.000028911902,0.00009381491,0.000018411998,0.000010197039,0.000014364007,0.0006640697],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978282,0.00053337717,0.0004782978,0.00017417845,0.00008438617,0.00090156205],"domain_scores_gemma":[0.9992232,0.00012382612,0.00032343424,0.0001971822,0.00011984617,0.000012555215],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012693091,0.00015108919,0.00019388678,0.0001515358,0.0002452618,0.000010812872,0.0002379345,0.00018581319,0.00027765962],"category_scores_gemma":[0.00008298399,0.000104819585,0.00010660758,0.00019615518,0.00015378509,0.00014358351,0.000026794905,0.001024585,0.00019612632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010737854,0.00012340858,0.00041778779,0.000007710645,0.00008509018,5.986464e-7,0.0032708733,0.00002801371,0.98539376,0.00397343,0.00034545828,0.00528008],"study_design_scores_gemma":[0.0010805244,0.0010669616,0.003619055,0.00015341681,0.00003114869,0.0001774618,0.0034106337,0.000017194176,0.98353606,0.0056153494,0.0011212014,0.00017099599],"about_ca_topic_score_codex":0.00003217322,"about_ca_topic_score_gemma":0.00008077705,"teacher_disagreement_score":0.005109084,"about_ca_system_score_codex":0.00016300027,"about_ca_system_score_gemma":0.0005802959,"threshold_uncertainty_score":0.44513687},"labels":[],"label_agreement":null},{"id":"W3174862079","doi":"10.21769/bioprotoc.4078","title":"Immunofluorescence of GFAP and TNF-α in the Mouse Hypothalamus","year":2021,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Banting and Best Diabetes Centre, University of Toronto; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Immunofluorescence; Hypothalamus; Immunostaining; Neuropeptide; Biology; Glial fibrillary acidic protein; Endoplasmic reticulum; Antibody; Cell biology; Pathology; Immunohistochemistry; Neuroscience; Immunology; Medicine; Biochemistry","score_opus":0.016160273886123188,"score_gpt":0.27404965948046045,"score_spread":0.2578893855943373,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174862079","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"protocol","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.61579466,0.00034992138,0.00002515122,0.0007281983,0.00010666919,0.37945125,0.000010348724,0.000039404567,0.0034944331],"genre_scores_gemma":[0.31732044,0.0000151865825,0.000097088145,0.00016597392,0.000020212245,0.68049896,0.000026610829,0.000012968876,0.001842567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989694,0.0003767739,0.0002940466,0.00015239592,0.000034813907,0.00017257525],"domain_scores_gemma":[0.9993958,0.000118488686,0.00009854917,0.0003236287,0.000058247995,0.000005308407],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030458695,0.00010010004,0.0001552366,0.000059875663,0.000072533825,0.000014636238,0.00017139695,0.00013995708,0.0002572767],"category_scores_gemma":[0.00012771571,0.00006977148,0.00004419148,0.00015397763,0.00015562182,0.00007668606,0.00007171521,0.0001628696,0.000074327894],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003528673,0.000099543046,0.0012241097,0.000057526024,0.000019345374,0.00000944744,0.0005503919,3.6023286e-7,0.9861257,0.00094796036,0.0008481241,0.009764639],"study_design_scores_gemma":[0.0016310902,0.00010638873,0.029135836,0.00003576207,0.000004684554,0.000058026,0.00037878027,0.0000017000627,0.85738647,0.00007554533,0.111103274,0.00008243622],"about_ca_topic_score_codex":0.00006366764,"about_ca_topic_score_gemma":0.000013372919,"teacher_disagreement_score":0.3010477,"about_ca_system_score_codex":0.000012664379,"about_ca_system_score_gemma":0.000077750745,"threshold_uncertainty_score":0.28451982},"labels":[],"label_agreement":null},{"id":"W3174916162","doi":"10.1096/fasebj.20.4.a650-b","title":"Polymorphisms in pulmonary innate immune system genes of swine","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Guelph","funders":"Ontario Ministry of Food and Agriculture","keywords":"Innate immune system; Single-nucleotide polymorphism; Biology; Single-strand conformation polymorphism; Gene; Surfactant protein D; Immune system; Collectin; Complement system; Coding region; Molecular biology; Genetics; Polymerase chain reaction; Immunology; Genotype","score_opus":0.006833181336561174,"score_gpt":0.19896565386950116,"score_spread":0.19213247253294,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3174916162","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.975296,0.022184456,0.00007788782,0.00033937395,0.00046438494,0.000087331995,0.000003250693,0.000014669876,0.0015326247],"genre_scores_gemma":[0.9981688,0.00013428128,0.000012384827,0.000011094507,0.00007376645,0.00000319438,0.000017549764,0.000008733457,0.0015701746],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987942,0.00036120118,0.0005199151,0.00006950478,0.00003991271,0.00021524374],"domain_scores_gemma":[0.99942213,0.00007094604,0.00026975048,0.00017810956,0.000052990723,0.000006099583],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00078348175,0.000098982375,0.00020601139,0.00017256531,0.00015209978,0.000010261175,0.00022858051,0.00010122711,0.00012327464],"category_scores_gemma":[0.000013836944,0.00006401954,0.000091252674,0.00014731706,0.00010273066,0.000097757365,0.000041103347,0.0002860358,0.00011479632],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032916496,0.000042230316,0.0017360627,0.000008763573,0.00003771423,0.000034457895,0.00009508495,0.0000910494,0.99302125,0.001064878,0.00007679356,0.0034625367],"study_design_scores_gemma":[0.00064669066,0.00005453952,0.043017026,0.00009649606,0.000020027277,0.0019629586,0.00027494607,0.000033902437,0.95275766,0.00012557073,0.00093561335,0.00007456491],"about_ca_topic_score_codex":0.0003000858,"about_ca_topic_score_gemma":0.0000058550877,"teacher_disagreement_score":0.041280963,"about_ca_system_score_codex":0.0000483197,"about_ca_system_score_gemma":0.00005391576,"threshold_uncertainty_score":0.2610641},"labels":[],"label_agreement":null},{"id":"W3175450549","doi":"10.1096/fasebj.26.1_supplement.835.10","title":"Anti‐inflammatory benefits of retinoids: retinoic acid and oxidatively‐transformed β‐carotene induce neutrophil apoptosis and inhibit leukotriene B <sup>4</sup> synthesis","year":2012,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Proinflammatory cytokine; Apoptosis; Inflammation; Retinoid; Retinoic acid; Immunology; Context (archaeology); Innate immune system; Biology; Chemistry; Immune system; Biochemistry","score_opus":0.012923231098796608,"score_gpt":0.20972471255582004,"score_spread":0.19680148145702342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175450549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98834753,0.010325052,0.00003532117,0.00067033176,0.00015491086,0.00023091109,0.000017832697,0.000024003844,0.00019407993],"genre_scores_gemma":[0.9963032,0.0033000745,0.000060432976,0.000054052234,0.0001239613,0.000013525653,0.000010321347,0.000024590536,0.000109859066],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99794525,0.0006547847,0.00060594984,0.00017760541,0.000102289356,0.00051414163],"domain_scores_gemma":[0.99880826,0.00035647812,0.00037966322,0.0002471171,0.00013662787,0.000071832685],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016024099,0.0002613604,0.0004361849,0.00022111941,0.000542388,0.00003597345,0.00021815494,0.00029827963,0.00013436902],"category_scores_gemma":[0.00028330123,0.00018214536,0.00010820247,0.00016470626,0.0004742795,0.0004974875,0.000094299736,0.00063616526,0.000033090786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005016817,0.00004261085,0.0033487407,0.0000380268,0.00020765376,0.0000012486479,0.0030405796,0.00001743048,0.98162484,0.00029372677,0.00010374876,0.010779688],"study_design_scores_gemma":[0.00093809876,0.00014237591,0.02876513,0.00018341205,0.00017771269,0.00073317776,0.0011816258,0.0000058679875,0.9672205,0.000041370415,0.0004108536,0.0001999072],"about_ca_topic_score_codex":0.000014759296,"about_ca_topic_score_gemma":4.5489458e-7,"teacher_disagreement_score":0.025416391,"about_ca_system_score_codex":0.00004031035,"about_ca_system_score_gemma":0.0000773794,"threshold_uncertainty_score":0.7427672},"labels":[],"label_agreement":null},{"id":"W3175906547","doi":"10.1096/fasebj.20.4.a651","title":"TRIF is essential for the clearance of Pseudomonas aeruginosa from the mouse lung","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; IWK Health Centre; Christopher Columbus Fellowship Foundation","keywords":"TRIF; Pseudomonas aeruginosa; Lung; Microbiology; Immunology; Signal transduction; Lung infection; Toll-like receptor; Biology; Medicine; Innate immune system; Immune system; Bacteria; Cell biology; Internal medicine","score_opus":0.008198373437509199,"score_gpt":0.22887249786168984,"score_spread":0.22067412442418063,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3175906547","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9824588,0.008700325,0.0032056621,0.004681541,0.00052927,0.00025201694,0.000044277924,0.000010141756,0.00011800216],"genre_scores_gemma":[0.9965524,0.0003697668,0.000025399171,0.00027277917,0.0003183776,0.0000091177335,0.000021162325,0.000009860382,0.00242112],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99902976,0.00030458622,0.00032485503,0.000079836675,0.00005278279,0.00020820637],"domain_scores_gemma":[0.9985941,0.0007621235,0.00027339545,0.00028112435,0.000083681174,0.000005594738],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00070556597,0.000100830075,0.00014322622,0.000023246532,0.0007058735,0.000036588845,0.00044549347,0.00009012339,0.00035327056],"category_scores_gemma":[0.000058217945,0.000044403576,0.00019156432,0.00006479184,0.00023230055,0.00008014583,0.000035168327,0.00034747046,0.000058959176],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009736215,0.000027914553,0.00024193035,0.0000024375806,0.0002006804,7.822301e-7,0.00076980557,0.000081954415,0.9584342,0.0006002647,0.03611365,0.0025527428],"study_design_scores_gemma":[0.0013275688,0.0000411745,0.0053501944,0.000017401526,0.00013152625,0.000084814055,0.0004444048,0.00012453324,0.97189605,0.00054467435,0.019970128,0.0000675226],"about_ca_topic_score_codex":0.00026809954,"about_ca_topic_score_gemma":0.000016153095,"teacher_disagreement_score":0.016143523,"about_ca_system_score_codex":0.00001584075,"about_ca_system_score_gemma":0.000058894813,"threshold_uncertainty_score":0.54290795},"labels":[],"label_agreement":null},{"id":"W3176005267","doi":"10.1096/fasebj.2019.33.1_supplement.lb254","title":"Glucocorticoids and Inflammatory Cytokines Synergize to Maintain TLR2 Expression in Airway Epithelial Cells","year":2019,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"Canadian Institutes of Health Research","keywords":"TLR2; A549 cell; Gene silencing; Downregulation and upregulation; Tumor necrosis factor alpha; Inflammation; Chemistry; Receptor; Molecular biology; Transcription factor; Toll-like receptor; Proinflammatory cytokine; Innate immune system; Glucocorticoid receptor; Gene expression; Cancer research; Biology; Immunology; Gene; Cell; Biochemistry","score_opus":0.0049496496543848635,"score_gpt":0.20777172192509044,"score_spread":0.2028220722707056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3176005267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974013,0.0005648186,0.0002382531,0.00046546347,0.0007337155,0.00027144473,0.0000034298791,0.000016752005,0.0003048107],"genre_scores_gemma":[0.9974866,0.00017928265,0.000060336708,0.00019634415,0.00008426996,0.000008904483,0.0000040301284,0.000013942272,0.0019662902],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99863595,0.00046355263,0.00037792948,0.00014312139,0.00005562997,0.0003238291],"domain_scores_gemma":[0.99938554,0.00017458752,0.00013974949,0.00022404346,0.00004303992,0.00003305844],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00089609995,0.00014598548,0.00020402057,0.00018101404,0.0001840016,0.00004078315,0.0002218973,0.00014053131,0.0005912599],"category_scores_gemma":[0.00006738952,0.00009381081,0.00005987037,0.00009759907,0.000076809025,0.0001690627,0.000112372545,0.00045082107,0.00089158525],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00076403003,0.000017710958,0.0016230297,0.000007765983,0.000022038588,0.000015896307,0.00078515493,0.00014634406,0.9921025,0.00023749811,0.00030122136,0.0039767814],"study_design_scores_gemma":[0.001366029,0.00017327747,0.011088859,0.00010102635,0.000011236545,0.00025211286,0.0005510708,0.000011699652,0.9769788,0.00020824936,0.009122779,0.00013489804],"about_ca_topic_score_codex":0.000013792769,"about_ca_topic_score_gemma":0.000007470683,"teacher_disagreement_score":0.015123767,"about_ca_system_score_codex":0.000050990504,"about_ca_system_score_gemma":0.00007019776,"threshold_uncertainty_score":0.99988633},"labels":[],"label_agreement":null},{"id":"W3176234498","doi":"10.1096/fasebj.27.1_supplement.1128.5","title":"Crosstalk between Toll‐like Receptor 4 and Interleukin 10 in Cardiomyocyte Survival","year":2013,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital","funders":"Canadian Institutes of Health Research","keywords":"IRF3; TLR4; Interferon regulatory factors; Cell biology; Toll-like receptor; Receptor; Phosphorylation; Signal transduction; Crosstalk; Tumor necrosis factor alpha; Biology; Innate immune system; Chemistry; Immunology; Biochemistry","score_opus":0.012915626287051953,"score_gpt":0.22986775284812855,"score_spread":0.2169521265610766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3176234498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961259,0.001394548,0.00005479535,0.00073356973,0.00060696446,0.00013853602,0.0000045453558,0.0000138390615,0.0009273297],"genre_scores_gemma":[0.9937645,0.00014964963,0.000017863951,0.00005098006,0.00010945642,0.000006968631,0.00001775094,0.000009787591,0.005873042],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987568,0.0005104475,0.00031397943,0.00010341924,0.00003872731,0.00027661643],"domain_scores_gemma":[0.99945873,0.00019134753,0.00011386665,0.00015679367,0.0000572372,0.000022034485],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00082529726,0.00011775118,0.00022040134,0.00010906991,0.00024034022,0.000088193585,0.00019547224,0.00012774786,0.001735992],"category_scores_gemma":[0.00006494223,0.00007687063,0.000069742964,0.00007853054,0.00016775043,0.00023067846,0.00007908672,0.00047495932,0.0010867149],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000282189,0.000015687847,0.01033285,0.0000054707734,0.00017537599,0.0000069537828,0.0013639099,0.000003362689,0.9519232,0.00004811476,0.0065785535,0.02926436],"study_design_scores_gemma":[0.0042566187,0.00042763326,0.21717644,0.00012947335,0.00007373257,0.00091585465,0.002773946,0.000009985116,0.6379552,0.0005649561,0.13528596,0.0004301963],"about_ca_topic_score_codex":0.00012773988,"about_ca_topic_score_gemma":0.000012334794,"teacher_disagreement_score":0.31396797,"about_ca_system_score_codex":0.000051181716,"about_ca_system_score_gemma":0.00004956166,"threshold_uncertainty_score":0.99969107},"labels":[],"label_agreement":null},{"id":"W3176507138","doi":"10.1096/fasebj.20.4.a204","title":"CpG motifs in bacterial DNA evokes peroxynitrite signaling in human neutrophils","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research","keywords":"Peroxynitrite; CpG site; DNA methylation; Molecular biology; DNA; Chemistry; CpG Oligodeoxynucleotide; Biology; Cell biology; Gene expression; Superoxide; Gene; Biochemistry; Enzyme","score_opus":0.009743425375138198,"score_gpt":0.22205610981955679,"score_spread":0.2123126844444186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3176507138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976668,0.0008712514,0.000025122143,0.00041373927,0.00041921405,0.00010961606,0.000002540168,0.000013252938,0.0004784972],"genre_scores_gemma":[0.99891084,0.0000323249,0.000007808714,0.000040982377,0.00023983848,0.0000060146554,0.000031386422,0.00001087643,0.000719935],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984565,0.00059175456,0.00047836645,0.00010531541,0.000039744096,0.00032831932],"domain_scores_gemma":[0.99956256,0.00010074255,0.00015244215,0.00013720599,0.000037683563,0.00000933509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008646574,0.00012561383,0.00019627574,0.00025097642,0.00029156514,0.000055649016,0.00022726721,0.00013661795,0.00067729346],"category_scores_gemma":[0.000036835616,0.000090570575,0.000080748396,0.00013696178,0.0000944673,0.00018432511,0.000034405293,0.00058104837,0.00010711759],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00031539303,0.000055813587,0.0018868424,0.0000026751695,0.000015945958,0.000031129108,0.0003546915,0.00023753628,0.99594903,0.00044994964,0.00019678174,0.00050421775],"study_design_scores_gemma":[0.0024928371,0.00010982692,0.044887297,0.000080777354,0.0000149266825,0.00031820536,0.00026501325,0.000010240683,0.9485494,0.0014328703,0.0016986514,0.00013997432],"about_ca_topic_score_codex":0.0002757587,"about_ca_topic_score_gemma":0.000091555834,"teacher_disagreement_score":0.047399644,"about_ca_system_score_codex":0.00007320642,"about_ca_system_score_gemma":0.00006425871,"threshold_uncertainty_score":0.74158883},"labels":[],"label_agreement":null},{"id":"W3178186466","doi":"10.1038/s41556-021-00708-8","title":"E-type prostanoid receptor 4 drives resolution of intestinal inflammation by blocking epithelial necroptosis","year":2021,"lang":"en","type":"article","venue":"Nature Cell Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":70,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; BC Children's Hospital; Centre for Drug Research and Development; Simon Fraser University","funders":"Crohn's and Colitis Canada; Deutsche Forschungsgemeinschaft","keywords":"Necroptosis; Cell biology; Inflammation; Biology; RIPK1; Signal transduction; Kinase; Programmed cell death; Tumor necrosis factor alpha; Receptor; Immunology; Apoptosis; Biochemistry","score_opus":0.004609610870061471,"score_gpt":0.22526028026446127,"score_spread":0.22065066939439978,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3178186466","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9848226,0.011294495,0.00024340436,0.00052814255,0.0013297715,0.00018514473,0.000029974964,0.00005665955,0.0015098313],"genre_scores_gemma":[0.99544567,0.00047336434,0.0005121274,0.00007153669,0.00008480721,0.000009736549,0.0016636702,0.000014028352,0.0017250605],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99843043,0.0005127877,0.00042786056,0.00030449315,0.0000342453,0.00029018708],"domain_scores_gemma":[0.99881953,0.00021291543,0.00029098886,0.00024830864,0.00041351214,0.000014733513],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00029186055,0.00017261245,0.00028408645,0.00011738598,0.00013567557,0.00000883544,0.00015690224,0.0009883895,0.0003963921],"category_scores_gemma":[0.00061471696,0.00015643435,0.00008527147,0.0002830226,0.00018974156,0.000088863104,0.000088868495,0.00064765156,0.00016470975],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000515329,0.000053013944,0.001052116,0.000033723343,0.00005010871,0.0000010936392,0.00021354012,0.0000048304705,0.9892909,0.0007353384,0.0027307363,0.0053192596],"study_design_scores_gemma":[0.0006345927,0.0002553617,0.00037059252,0.000033319975,0.000025493015,0.000016576192,0.00008586223,0.000010560737,0.8555416,0.00011807146,0.14277188,0.00013607531],"about_ca_topic_score_codex":0.000017692113,"about_ca_topic_score_gemma":0.0000047618773,"teacher_disagreement_score":0.14004114,"about_ca_system_score_codex":0.00004916574,"about_ca_system_score_gemma":0.00015000414,"threshold_uncertainty_score":0.76233655},"labels":[],"label_agreement":null},{"id":"W3179261078","doi":"10.1080/10253890.2021.1954905","title":"Endotoxin-induced cytokine, chemokine and white blood cell profiles of variable stress-responding sheep","year":2021,"lang":"en","type":"article","venue":"Stress","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Canada First Research Excellence Fund; Mitacs","keywords":"Chemokine; Cytokine; Immunology; Medicine; Inflammation","score_opus":0.006956250884250239,"score_gpt":0.2123051340187848,"score_spread":0.2053488831345346,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3179261078","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908944,0.0019411172,0.000042642474,0.0000922728,0.00025870654,0.00017494943,0.00014711464,0.000038745653,0.006410065],"genre_scores_gemma":[0.99259204,0.00014422252,0.00024525198,0.000021953181,0.000036913803,0.000019922618,0.00031391447,0.000018201852,0.0066075674],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988192,0.00020732307,0.00034226343,0.0002826204,0.000050153518,0.00029845635],"domain_scores_gemma":[0.99920386,0.00014163437,0.00017091843,0.00032216022,0.00014143345,0.000019998892],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017662856,0.00017449837,0.0003102099,0.00015830579,0.00012002325,0.00002122633,0.00013585131,0.00022459045,0.000788059],"category_scores_gemma":[0.00012455757,0.0001664642,0.0000558949,0.0002672343,0.00007583575,0.00013407304,0.00013719885,0.00021861856,0.0000253635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019264077,0.00016103323,0.0066822493,0.00016486927,0.00013168318,0.000020053327,0.00040164054,0.000008405386,0.9905542,0.00082814664,0.00010963513,0.00074541435],"study_design_scores_gemma":[0.0016405311,0.0001083345,0.0055236095,0.00015111684,0.000088742505,0.000046988735,0.0005320591,0.0000066523926,0.9900371,0.00004300117,0.0016559685,0.00016591998],"about_ca_topic_score_codex":0.00003657333,"about_ca_topic_score_gemma":0.0000068789664,"teacher_disagreement_score":0.0017968947,"about_ca_system_score_codex":0.000011718441,"about_ca_system_score_gemma":0.00011045635,"threshold_uncertainty_score":0.8628694},"labels":[],"label_agreement":null},{"id":"W3179580365","doi":"10.1186/s12936-021-03836-6","title":"Toll-like receptor 9 and 4 gene polymorphisms in susceptibility and severity of malaria: a meta-analysis of genetic association studies","year":2021,"lang":"en","type":"review","venue":"Malaria Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Malaria; Meta-analysis; Medicine; Immunology; TLR9; Parasitology; Plasmodium falciparum; Allele; Public health; Internal medicine; Demography; Biology; Genetics; Pathology; Gene","score_opus":0.06516161743038978,"score_gpt":0.3225921263650665,"score_spread":0.2574305089346767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3179580365","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023541002,0.9755949,0.000017284956,0.00017743304,0.00029058615,0.00027214485,0.00009546156,0.0000037989523,0.000007396443],"genre_scores_gemma":[0.0033120057,0.995644,0.0003455792,0.000014421001,0.000021509344,0.000016917731,0.00010850081,0.000014181361,0.00052291836],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9950089,0.0026704434,0.001639163,0.00032720293,0.00010371045,0.00025060604],"domain_scores_gemma":[0.99674094,0.0008160939,0.0018138888,0.00029344417,0.0003127671,0.000022876806],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0028249691,0.00031551093,0.0045037847,0.0006663837,0.00010094879,0.000025211792,0.00014748162,0.0006564173,0.0007342917],"category_scores_gemma":[0.00080447865,0.00024260457,0.0011737065,0.0005749344,0.00013378891,0.00010123026,0.0001730313,0.00065288786,0.0000036116444],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032808536,0.00038527648,0.0103523005,0.0032494431,0.84909487,0.000047842426,0.0018056195,0.000011272737,0.0063780346,0.000219881,0.00080315024,0.12732422],"study_design_scores_gemma":[0.001676878,0.00045642786,0.06298824,0.0012603803,0.7750969,0.0007616128,0.00040868303,0.000006057567,0.0014199459,0.00008883344,0.15498537,0.00085071684],"about_ca_topic_score_codex":0.00005353399,"about_ca_topic_score_gemma":0.00008122472,"teacher_disagreement_score":0.15418221,"about_ca_system_score_codex":0.00017989222,"about_ca_system_score_gemma":0.00023802744,"threshold_uncertainty_score":0.9893127},"labels":[],"label_agreement":null},{"id":"W3180250675","doi":"10.3390/cells10071735","title":"Leukocytes in Inflammation, Resolution of Inflammation, Autoimmune Diseases and Cancer","year":2021,"lang":"en","type":"editorial","venue":"Cells","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research","keywords":"Inflammation; Cancer; Medicine; Autoimmune disease; Immunology; Internal medicine; Antibody","score_opus":0.005345127959181792,"score_gpt":0.23302209507888516,"score_spread":0.22767696711970337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3180250675","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22768669,0.11568079,0.00003646391,0.0002973412,0.6548024,0.00074364257,0.00028288955,0.00009212882,0.00037765934],"genre_scores_gemma":[0.1450171,0.13169912,0.0002048877,0.000042856333,0.65162057,0.0010098404,0.026087545,0.0003463383,0.043971755],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99793243,0.0004241556,0.0008873193,0.00035280638,0.00011681028,0.00028650044],"domain_scores_gemma":[0.9979412,0.0006693408,0.00057275797,0.00037110824,0.0004292454,0.000016355814],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00037149157,0.00028589732,0.00062040024,0.00034404255,0.00010177847,0.00003109162,0.00019099607,0.0010292319,0.00035302862],"category_scores_gemma":[0.0007130682,0.00029203916,0.00009817874,0.00024089786,0.00020902196,0.00023338948,0.00013293244,0.00051926705,0.000058283367],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002996874,0.000031215357,0.00014168986,0.00047648707,0.00014905857,0.000005661191,0.0006736357,0.00013017823,0.6006212,0.000089821035,0.3895047,0.007876633],"study_design_scores_gemma":[0.0010545668,0.000040573606,0.0021967548,0.00058138167,0.00009266228,0.0000010246563,0.00008893513,0.000020902593,0.31339592,0.000061497965,0.6822266,0.0002391688],"about_ca_topic_score_codex":0.000461654,"about_ca_topic_score_gemma":0.000104317565,"teacher_disagreement_score":0.29272193,"about_ca_system_score_codex":0.00015875942,"about_ca_system_score_gemma":0.0007218449,"threshold_uncertainty_score":0.99995315},"labels":[],"label_agreement":null},{"id":"W3183637498","doi":"10.7150/thno.62256","title":"Twist1 contributes to developing and sustaining corticosteroid resistance in ulcerative colitis","year":2021,"lang":"en","type":"article","venue":"Theranostics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Ulcerative colitis; Colitis; Inflammation; STAT protein; Inflammatory bowel disease; STAT3; Corticosteroid; Glucocorticoid receptor; Glucocorticoid; Medicine; Activator (genetics); Apoptosis; Immunology; Receptor; Chemistry; Cancer research; Internal medicine","score_opus":0.011634937648096267,"score_gpt":0.24818629869756134,"score_spread":0.2365513610494651,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3183637498","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9877788,0.0049193483,0.0038214575,0.0025335134,0.0002077253,0.00019388233,0.0000058765454,0.00005930381,0.00048010214],"genre_scores_gemma":[0.9971002,0.0002436884,0.00047587274,0.0007629944,0.000008756163,0.000013733771,0.000028530054,0.00001695444,0.0013493132],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99913913,0.0002360648,0.00023258911,0.00014949506,0.000018167651,0.00022457133],"domain_scores_gemma":[0.99929523,0.00039157807,0.00004245815,0.00011252686,0.00014825416,0.000009921997],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019533056,0.000090613496,0.0001849154,0.00006599199,0.00006770317,0.000027291679,0.000049992155,0.000093565766,0.000016630125],"category_scores_gemma":[0.0006167338,0.00009294763,0.0000137172965,0.00016352611,0.000058756323,0.000049904073,0.000050219533,0.00011671073,0.000020747535],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023987098,0.00004577383,0.0054036546,0.00006746595,0.00017431092,0.00013939208,0.011446873,0.000012350751,0.86677605,0.10282437,0.000901993,0.00980906],"study_design_scores_gemma":[0.0027464952,0.000080551385,0.28083497,0.00038425857,0.000024008934,0.000032926386,0.002568394,0.0000056572435,0.5950582,0.0038263027,0.114150554,0.00028769244],"about_ca_topic_score_codex":0.000012510023,"about_ca_topic_score_gemma":0.00047476607,"teacher_disagreement_score":0.27543133,"about_ca_system_score_codex":0.000076000746,"about_ca_system_score_gemma":0.000147565,"threshold_uncertainty_score":0.37902942},"labels":[],"label_agreement":null},{"id":"W3187259447","doi":"10.21769/bioprotoc.3937","title":"Live Intravital Intestine with Blood Flow Visualization in Neonatal Mice Using Two-photon Laser Scanning Microscopy","year":2021,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Heart and Stroke Foundation; Hospital for Sick Children","funders":"Canadian Institutes of Health Research; Hospital for Sick Children; Natural Sciences and Engineering Research Council of Canada; Heart and Stroke Foundation of Canada","keywords":"Intravital microscopy; Microcirculation; Two-photon excitation microscopy; Blood flow; Small intestine; Microscopy; Pathology; Visualization; Biology; Live cell imaging; Anatomy; Medicine; Computer science; Optics; Cell; Radiology; Physics; Artificial intelligence; Endocrinology; Biochemistry","score_opus":0.012149212056981783,"score_gpt":0.3021892484178826,"score_spread":0.2900400363609008,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3187259447","genre_codex":"empirical","genre_gemma":"protocol","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.88435,0.000043706124,0.0010515052,0.00003534813,0.000116648655,0.114202216,0.0000116734245,0.000068052956,0.00012086719],"genre_scores_gemma":[0.4781494,0.0000023043315,0.007279523,0.00028889472,0.00016356658,0.5120538,0.000728219,0.00011312349,0.0012212083],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99852157,0.0002957709,0.0004148457,0.00036140348,0.000053390624,0.00035303814],"domain_scores_gemma":[0.99931306,0.00007367112,0.00017911183,0.00022813128,0.00018520033,0.00002080316],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020200056,0.00023031954,0.00025241685,0.00016758604,0.00015521156,0.00005255323,0.00012863432,0.00019879686,0.0004710082],"category_scores_gemma":[0.00012304739,0.00020923946,0.000049740167,0.0003847412,0.00012159008,0.00025303478,0.000095019466,0.00025451538,0.00012870891],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014591436,0.00014723715,0.004677037,0.000078324374,0.000062100626,0.00009517781,0.0008682849,0.00011259685,0.99091697,0.000043268647,0.00006562611,0.001474217],"study_design_scores_gemma":[0.006138434,0.0003188301,0.0013835998,0.00043165978,0.000032501735,0.00043030072,0.00045018346,0.00055655977,0.9837528,0.00001475471,0.006215944,0.00027442444],"about_ca_topic_score_codex":0.00023048777,"about_ca_topic_score_gemma":0.00012482028,"teacher_disagreement_score":0.4062006,"about_ca_system_score_codex":0.00007822898,"about_ca_system_score_gemma":0.00028107886,"threshold_uncertainty_score":0.8532537},"labels":[],"label_agreement":null},{"id":"W3192590880","doi":"10.1128/msystems.00306-21","title":"Species-Specific Endotoxin Stimulus Determines Toll-Like Receptor 4- and Caspase 11-Mediated Pathway Activation Characteristics","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Genome Canada; Division of Intramural Research, National Institute of Allergy and Infectious Diseases; American Association of Pharmaceutical Scientists","keywords":"Stimulus (psychology); Toll-like receptor; Receptor; Cell biology; Toll; Chemistry; Communication; Biology; Neuroscience; Innate immune system; Immunology; Psychology; Genetics; Cognitive psychology","score_opus":0.01452351191918708,"score_gpt":0.20497328349391464,"score_spread":0.19044977157472756,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3192590880","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99545515,0.0013388242,0.00018977803,0.0001954411,0.0019407406,0.00028384253,0.0000791278,0.00008523653,0.00043187744],"genre_scores_gemma":[0.98670906,0.00025211935,0.000025493611,0.000070618764,0.00016823824,0.000042518637,0.0011206841,0.000022135579,0.011589125],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99854785,0.0003740862,0.00044809352,0.00029693448,0.000053369276,0.00027967364],"domain_scores_gemma":[0.9990474,0.00028563617,0.00019730114,0.00030461408,0.000136781,0.000028245599],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000237842,0.00019477906,0.00033637046,0.00010354504,0.00018965185,0.00006153868,0.00008844795,0.00024534727,0.0005098418],"category_scores_gemma":[0.00020132365,0.0001813566,0.000058515358,0.0001475397,0.00007501512,0.00014524891,0.000059619077,0.00016344679,0.00053349405],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015008898,0.00004560465,0.0014932548,0.000051629515,0.00004594597,0.000037003785,0.000480565,3.9635134e-7,0.9902134,0.00015484601,0.003093351,0.0042338907],"study_design_scores_gemma":[0.0007312528,0.00004989379,0.006896664,0.000076844306,0.000007987332,0.00013913434,0.00033580133,0.0000170552,0.5369673,0.0000013985325,0.45461997,0.00015673187],"about_ca_topic_score_codex":0.00003610098,"about_ca_topic_score_gemma":0.000018763283,"teacher_disagreement_score":0.45324615,"about_ca_system_score_codex":0.000070287984,"about_ca_system_score_gemma":0.00008048638,"threshold_uncertainty_score":0.73955077},"labels":[],"label_agreement":null},{"id":"W3195341422","doi":"10.1159/000518230","title":"Endotoxemia in Critically Ill Patients with COVID-19","year":2021,"lang":"en","type":"article","venue":"Blood Purification","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health; Stony Brook University; U.S. Department of Veterans Affairs","keywords":"Critically ill; Coronavirus disease 2019 (COVID-19); Medicine; Intensive care medicine; 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Critical illness; Pandemic; Virology; Internal medicine; Disease; Outbreak; Infectious disease (medical specialty)","score_opus":0.008723594916142906,"score_gpt":0.23251850162871,"score_spread":0.22379490671256708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3195341422","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9940668,0.00081870734,0.0006577747,0.0025784313,0.0001210621,0.00026082373,0.000008048104,0.00005182727,0.0014365768],"genre_scores_gemma":[0.99626243,0.00004414674,0.00030596924,0.0015469724,0.00001107384,0.00006069556,0.000772971,0.000009833172,0.0009858937],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990684,0.00024174183,0.00023975875,0.00022226106,0.000039407343,0.0001884609],"domain_scores_gemma":[0.99903715,0.00012655892,0.00006177575,0.0002695963,0.0004823614,0.000022551472],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016638354,0.00009148275,0.00012157221,0.00008829475,0.000088379216,0.000015591797,0.00008767717,0.0001431742,0.00038950602],"category_scores_gemma":[0.0013755435,0.000083548104,0.000025928339,0.00018987634,0.00006105519,0.00011984518,0.000017765462,0.00014242514,0.00027366626],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006459696,0.001224426,0.08520324,0.000075167605,0.0001258855,0.000032300934,0.0010993618,0.000016271588,0.89247215,0.0104704,0.0014865302,0.007148306],"study_design_scores_gemma":[0.0050139287,0.0001478648,0.259689,0.000030853225,0.00006353145,0.00004378973,0.00029106875,0.000002665487,0.64998525,0.0002586614,0.08424861,0.00022477382],"about_ca_topic_score_codex":0.000027932161,"about_ca_topic_score_gemma":0.00002339739,"teacher_disagreement_score":0.2424869,"about_ca_system_score_codex":0.000042428535,"about_ca_system_score_gemma":0.00022882065,"threshold_uncertainty_score":0.42648175},"labels":[],"label_agreement":null},{"id":"W3196009884","doi":"10.1038/s41467-021-24982-0","title":"Listeria exploits IFITM3 to suppress antibacterial activity in phagocytes","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; University Health Network; University of Calgary; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Office of Extramural Research, National Institutes of Health; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; National Institutes of Health; U.S. Department of Health and Human Services; Government of Canada; Hospital for Sick Children; Ontario Innovation Trust; Scheme for Promotion of Academic and Research Collaboration","keywords":"Phagosome; Listeria monocytogenes; Intracellular parasite; Microbiology; Biology; Interferon; Immune system; Listeria; Cell biology; Intracellular; Virulence; Signal transduction; Transmembrane protein; Immunology; Bacteria; Gene; Receptor","score_opus":0.023276155339059103,"score_gpt":0.30727552477358394,"score_spread":0.28399936943452486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196009884","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9869428,0.0048603313,0.000022196638,0.0048036743,0.0008337292,0.00020655288,0.00003280793,0.00005921925,0.002238689],"genre_scores_gemma":[0.997248,0.0004351995,0.0004497928,0.00026630008,0.000027522008,0.000054238924,0.00045347685,0.000012717109,0.0010527327],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986833,0.00064496126,0.00022376605,0.0001987923,0.000029988769,0.00021921124],"domain_scores_gemma":[0.998073,0.00030483995,0.000067257315,0.0013926476,0.00014475924,0.000017521603],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022179916,0.00012241391,0.00020456365,0.00013179153,0.00020225887,0.00003981143,0.0006280346,0.000419038,0.00024541642],"category_scores_gemma":[0.00042201043,0.0001276001,0.0000589689,0.0003425833,0.00007342444,0.00022051575,0.0004969311,0.00073633896,0.00031056668],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017711359,0.00017113777,0.00055105373,0.0000054200327,0.000031703054,0.0000026345372,0.00065087085,0.0000012591499,0.99144834,0.0013462369,0.0021643816,0.0034498551],"study_design_scores_gemma":[0.0005574622,0.000024012359,0.056133024,0.00003616225,0.000010524226,0.000020945256,0.00015176435,0.0000038915396,0.7086813,0.00002463262,0.23422821,0.00012807775],"about_ca_topic_score_codex":0.0000415309,"about_ca_topic_score_gemma":0.0006042372,"teacher_disagreement_score":0.28276703,"about_ca_system_score_codex":0.000055117373,"about_ca_system_score_gemma":0.00010935615,"threshold_uncertainty_score":0.52033806},"labels":[],"label_agreement":null},{"id":"W3196086765","doi":"10.1101/2021.08.23.457326","title":"Single Nucleotide Polymorphisms in the Bovine TLR2 Extracellular Domain Contribute to Breed and Species-Specific Innate Immune Functionality","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Biology; TLR2; Single-nucleotide polymorphism; Innate immune system; Antigen; SNP; Genetics; Immune system; Gene; Genotype; Microbiology","score_opus":0.014016022308882055,"score_gpt":0.1979231014676182,"score_spread":0.18390707915873616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3196086765","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9652077,0.028359735,0.0010837785,0.0022585357,0.0018381097,0.00096187583,0.0001446037,0.00012327773,0.000022380125],"genre_scores_gemma":[0.99822485,0.0005811058,0.00035330022,0.00031687543,0.00021405843,0.00014047907,0.000014140881,0.000065691034,0.000089490975],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9961721,0.0011029467,0.0009493404,0.00091824366,0.00016869418,0.000688708],"domain_scores_gemma":[0.9975712,0.00025460075,0.00041322477,0.001339035,0.00035828823,0.00006369551],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022225273,0.0005653906,0.00077497837,0.00035504843,0.0003265273,0.00028462047,0.0005931495,0.00070957,0.0003192584],"category_scores_gemma":[0.00025043314,0.00051806326,0.00018975032,0.00060966983,0.00027193417,0.00019173483,0.00058043766,0.0011712464,0.00017732428],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004646509,0.00022890368,0.0014342084,0.00005470128,0.00018622706,0.00011167057,0.000114259536,0.0000071721743,0.9955621,0.0013291095,0.00049690984,0.000010094768],"study_design_scores_gemma":[0.0012864519,0.00012990866,0.31336996,0.00028392716,0.000056109282,5.596506e-7,0.000059490456,0.0000032964465,0.5590514,0.0000056800577,0.12515777,0.00059543387],"about_ca_topic_score_codex":0.0001282324,"about_ca_topic_score_gemma":0.0000116637,"teacher_disagreement_score":0.43651068,"about_ca_system_score_codex":0.00029972233,"about_ca_system_score_gemma":0.00027757746,"threshold_uncertainty_score":0.9997271},"labels":[],"label_agreement":null},{"id":"W3199786667","doi":"10.1016/j.envint.2021.106779","title":"Establishment of baseline cytology metrics in nestling American kestrels (Falco sparverius): Immunomodulatory effects of the flame retardant isopropylated triarylphosphate isomers","year":2021,"lang":"en","type":"article","venue":"Environment International","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Environment and Climate Change Canada","funders":"U.S. Geological Survey; Environment and Climate Change Canada","keywords":"Immune system; Flow cytometry; Antibody; Receptor; Biology; Immunofluorescence; Molecular biology; Zoology; Andrology; Internal medicine; Immunology; Medicine; Biochemistry","score_opus":0.00468619051165123,"score_gpt":0.20106617191841764,"score_spread":0.1963799814067664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3199786667","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947201,0.0029426906,0.00047550563,0.00049566716,0.0010020315,0.00022701752,0.000018199235,0.000008724405,0.00011006795],"genre_scores_gemma":[0.9977834,0.0011504649,0.00020506172,0.00007140589,0.000014275091,0.000019138979,0.00017166667,0.000012810542,0.0005717679],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983367,0.00044455953,0.00064733735,0.00024329148,0.00012735672,0.0002008077],"domain_scores_gemma":[0.9987439,0.00039071028,0.00047945642,0.000329845,0.000044717508,0.00001135428],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00045690703,0.00016139398,0.00035744908,0.00020114832,0.000039901428,0.0000055170117,0.0002845859,0.00010472656,0.0003936593],"category_scores_gemma":[0.00039172074,0.00012832138,0.00015638515,0.00026619612,0.0002749359,0.00010168775,0.00018212816,0.0002366042,0.000036237],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00046465197,0.00038405685,0.029330507,0.000030745527,0.00039247732,0.00002199383,0.00033541382,0.0018154363,0.9554086,0.0003792975,0.00007409004,0.011362768],"study_design_scores_gemma":[0.001667112,0.000116580595,0.1475715,0.00008254952,0.00004378327,0.000020826868,0.00013865677,0.00028283088,0.8441788,0.00004112345,0.0057418994,0.00011432936],"about_ca_topic_score_codex":0.00016173511,"about_ca_topic_score_gemma":0.000006143803,"teacher_disagreement_score":0.118241,"about_ca_system_score_codex":0.00016092851,"about_ca_system_score_gemma":0.00007958692,"threshold_uncertainty_score":0.5232794},"labels":[],"label_agreement":null},{"id":"W3201181612","doi":"10.1016/j.celrep.2021.109691","title":"Metabolic endotoxemia is dictated by the type of lipopolysaccharide","year":2021,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":160,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Lipopolysaccharide; Biology; Chemistry; Computational biology; Immunology","score_opus":0.01002837110859796,"score_gpt":0.23403046258792928,"score_spread":0.2240020914793313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3201181612","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9682596,0.024529275,0.000019100964,0.00020866514,0.00073733437,0.00009757381,0.000002658226,0.000024363851,0.0061214776],"genre_scores_gemma":[0.96892947,0.0005708015,0.000009636275,0.00017085782,0.0000124243425,0.000006218566,0.000105956045,0.0000093964145,0.030185236],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99914134,0.00013103515,0.00036974947,0.00016207353,0.000036017038,0.00015981468],"domain_scores_gemma":[0.999096,0.00007444132,0.00024544654,0.0004303348,0.00014484399,0.000008943919],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00022443463,0.00008983004,0.00018505666,0.000028591045,0.0000849826,0.000007724024,0.000075118165,0.000119956196,0.0015085695],"category_scores_gemma":[0.00014537832,0.00006399496,0.00007853036,0.00012908979,0.00007865015,0.00004686556,0.00005171908,0.0001437798,0.00014092833],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000031249565,0.000034706063,0.00064045197,0.000007001603,0.000072775816,0.0000439774,0.0003316033,5.6977103e-7,0.9726904,0.00005324365,0.024604863,0.0014891347],"study_design_scores_gemma":[0.00011633995,0.000015277248,0.00046524353,0.00000562141,0.000039572322,0.0002757159,0.000087411616,6.0144487e-7,0.7274329,0.000047435457,0.27146438,0.000049476992],"about_ca_topic_score_codex":0.00008636283,"about_ca_topic_score_gemma":0.0000016097681,"teacher_disagreement_score":0.2468595,"about_ca_system_score_codex":0.0000074142667,"about_ca_system_score_gemma":0.00013676255,"threshold_uncertainty_score":0.9994042},"labels":[],"label_agreement":null},{"id":"W3202414391","doi":"10.1016/j.ijbiomac.2021.10.014","title":"The crosstalk between pattern-recognition receptor signaling and calcium signaling","year":2021,"lang":"en","type":"review","venue":"International Journal of Biological Macromolecules","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":95,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Priority Academic Program Development of Jiangsu Higher Education Institutions","keywords":"Crosstalk; Pattern recognition receptor; Signal transduction; Innate immune system; Biology; Receptor; Cell biology; Immune system; Calcium signaling; Cell signaling; Immunology; Biochemistry","score_opus":0.07655949505771723,"score_gpt":0.3414262603236067,"score_spread":0.2648667652658895,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3202414391","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0181193,0.97906834,0.0008467298,0.00021408248,0.0014172939,0.0001655841,0.0001237756,0.000014608364,0.000030299594],"genre_scores_gemma":[0.0135708125,0.98496586,0.00011030026,0.000055638615,0.0005145324,0.000012694671,0.00068856176,0.000021754942,0.000059869402],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99694866,0.001076743,0.0013093791,0.000255237,0.0001318795,0.00027810846],"domain_scores_gemma":[0.9962193,0.0017848525,0.0012815862,0.0001227112,0.0005551019,0.000036481364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010043331,0.0003270164,0.0010021082,0.00017165706,0.00023818127,0.00021470507,0.000620588,0.00056123233,0.00023470461],"category_scores_gemma":[0.0007130628,0.0001874473,0.0006109504,0.00009686519,0.00029861464,0.00010066058,0.0002265058,0.00080114976,0.000103959006],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005416507,0.000029833585,0.000029743747,0.000091296926,0.001246095,0.00007553775,0.00003830393,2.2109874e-7,0.010258416,0.00003123037,0.00015020905,0.98799497],"study_design_scores_gemma":[0.0004796116,0.0002560885,0.000032933935,0.005113976,0.0003185279,0.0011486474,0.00013536621,2.0905341e-7,0.015029583,0.00017856639,0.97699416,0.00031233652],"about_ca_topic_score_codex":0.000007534975,"about_ca_topic_score_gemma":3.871461e-7,"teacher_disagreement_score":0.98768264,"about_ca_system_score_codex":0.00009584401,"about_ca_system_score_gemma":0.00016387994,"threshold_uncertainty_score":0.76438785},"labels":[],"label_agreement":null},{"id":"W3203537677","doi":"10.3389/fimmu.2021.725063","title":"Isolation of Skin Leukocytes Uncovers Phagocyte Inflammatory Responses During Induction and Resolution of Cutaneous Inflammation in Fish","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University of Alberta","keywords":"Inflammation; Phagocyte; Chemokine; Immunology; Immune system; Biology; Proinflammatory cytokine","score_opus":0.005719170841321276,"score_gpt":0.20541462744556976,"score_spread":0.19969545660424848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3203537677","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9937794,0.004375756,0.00044010073,0.00013361145,0.0009019113,0.00021833852,0.0000075095622,0.000021979686,0.00012135149],"genre_scores_gemma":[0.99714017,0.0016910312,0.00066669524,0.000007178508,0.000016669299,0.00001898261,0.000102675294,0.000014072821,0.00034250208],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977359,0.0008153356,0.00084749336,0.0002730672,0.000053608677,0.00027455832],"domain_scores_gemma":[0.99899447,0.00016761446,0.00042237106,0.00026998876,0.00013750188,0.0000080800055],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004171702,0.00016734141,0.00044367666,0.00084632554,0.00006860289,0.000006491317,0.0001079536,0.0004758981,0.000034707675],"category_scores_gemma":[0.000541164,0.00019611964,0.000060200608,0.00041949147,0.0003414078,0.0003643873,0.00008841441,0.000336787,0.0000041951453],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0037748395,0.000048237147,0.053375438,0.00008978916,0.0001084707,0.00002006411,0.0016356722,0.00035988318,0.9345083,0.00023979982,0.000055439792,0.00578402],"study_design_scores_gemma":[0.0020511064,0.00012206849,0.2210084,0.00013841728,0.000018219316,0.00016655077,0.0022416613,0.00008331855,0.77321696,0.0002858714,0.0005317273,0.00013570314],"about_ca_topic_score_codex":0.00014614148,"about_ca_topic_score_gemma":0.00018976389,"teacher_disagreement_score":0.16763297,"about_ca_system_score_codex":0.00022118482,"about_ca_system_score_gemma":0.00019677675,"threshold_uncertainty_score":0.79975265},"labels":[],"label_agreement":null},{"id":"W3205367390","doi":"10.1016/j.molimm.2021.10.003","title":"Pre-treatment with chicken IL-17A secreted by bioengineered LAB vector protects chicken embryo fibroblasts against Influenza Type A Virus (IAV) infection","year":2021,"lang":"en","type":"article","venue":"Molecular Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Indian Institute of Science Education and Research Kolkata; Department of Biotechnology, Ministry of Science and Technology, India","keywords":"Biology; Lactococcus lactis; Immune system; Virus; Influenza A virus subtype H5N1; Influenza A virus; Interferon; Virology; Viral replication; Microbiology; Immunology; Bacteria; Genetics; Lactic acid","score_opus":0.005430119469060967,"score_gpt":0.21519593528108802,"score_spread":0.20976581581202705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3205367390","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9867971,0.010125881,0.0008401068,0.00024624728,0.00051802065,0.00083750556,0.00005082287,0.00028951414,0.00029481418],"genre_scores_gemma":[0.9952813,0.00065596594,0.00013850401,0.00032251346,0.00002745151,0.00025176117,0.0016970244,0.00008569104,0.0015397797],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99737537,0.0007561174,0.00048755854,0.00061668095,0.000077999735,0.00068628567],"domain_scores_gemma":[0.99860865,0.00007305129,0.00023396114,0.00076424796,0.00028216647,0.000037925747],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00014021994,0.0004977239,0.0005611813,0.00023722905,0.00025556592,0.000049460068,0.00020413428,0.00071036315,0.00026124224],"category_scores_gemma":[0.00013803702,0.00043947142,0.00015221359,0.00059394474,0.0002221516,0.00017372468,0.0001404439,0.00050173816,0.0005784012],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016849911,0.00023907622,0.0001357086,0.000034071207,0.0014969611,0.00009816628,0.0004498926,0.00012534978,0.99166894,0.00010732635,0.00026293105,0.0036965918],"study_design_scores_gemma":[0.0034195404,0.0022337183,0.0054212874,0.00009367935,0.000098877266,0.0002895089,0.000052271665,0.000033175416,0.9173783,0.00001601028,0.070514604,0.0004490294],"about_ca_topic_score_codex":0.0003774869,"about_ca_topic_score_gemma":0.00008381838,"teacher_disagreement_score":0.07429063,"about_ca_system_score_codex":0.00023606501,"about_ca_system_score_gemma":0.00038379838,"threshold_uncertainty_score":0.9998057},"labels":[],"label_agreement":null},{"id":"W3211537661","doi":"10.1002/jcp.30640","title":"Citral alleviates peptidoglycan‐induced inflammation and disruption of barrier functions in porcine intestinal epithelial cells","year":2021,"lang":"en","type":"article","venue":"Journal of Cellular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; University of Manitoba","funders":"Canada Foundation for Innovation","keywords":"Peptidoglycan; Citral; Inflammation; TLR2; Microbiology; Immune system; Innate immune system; Staphylococcus aureus; Lipoteichoic acid; Biology; Barrier function; Bacillus subtilis; Chemistry; Cell biology; Biochemistry; Immunology; Enzyme; Bacteria; Food science","score_opus":0.009357431507744086,"score_gpt":0.22068893229912248,"score_spread":0.21133150079137838,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3211537661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974054,0.0009824507,0.00065387215,0.00019489443,0.00060108706,0.00007323095,0.0000041082394,0.0000048894344,0.000080050726],"genre_scores_gemma":[0.9991958,0.00015329215,0.0000933104,0.000015568723,0.00013502919,0.0000022667978,0.000053624328,0.000008841075,0.00034223803],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984878,0.00044739773,0.0007098546,0.00013023682,0.000043498534,0.0001812198],"domain_scores_gemma":[0.99888265,0.00016732636,0.00051892304,0.00012781826,0.00028220785,0.000021056627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000391795,0.00012691547,0.0003910394,0.00022794941,0.0000532083,0.0000063403613,0.00008260586,0.0001870272,0.00027497395],"category_scores_gemma":[0.00019967444,0.000110358305,0.00011883341,0.00014151187,0.00010739783,0.0001849193,0.000044247507,0.0003419774,0.000023961084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068838376,0.000069972484,0.00044153168,0.000034011482,0.000084468964,0.000019457419,0.0004038302,0.000107483516,0.9961551,0.00026213354,0.00004689551,0.0016867572],"study_design_scores_gemma":[0.0014708686,0.00046905482,0.021659452,0.000069084985,0.000050580533,0.00023048626,0.00038898896,0.000045531942,0.97394246,0.000577891,0.0010001711,0.000095420124],"about_ca_topic_score_codex":0.000018258754,"about_ca_topic_score_gemma":0.000010391406,"teacher_disagreement_score":0.022212606,"about_ca_system_score_codex":0.000031097396,"about_ca_system_score_gemma":0.00014408452,"threshold_uncertainty_score":0.45002812},"labels":[],"label_agreement":null},{"id":"W3216852367","doi":"10.21037/tcr-21-1508","title":"Association between single nucleotide polymorphisms of IL-6 and susceptibility to skin cancer: a meta-analysis and systematic review","year":2021,"lang":"en","type":"article","venue":"Translational Cancer Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Meta-analysis; Odds ratio; Single-nucleotide polymorphism; Confidence interval; Internal medicine; Medicine; Publication bias; Oncology; Gastroenterology; Genotype; Biology; Genetics; Gene","score_opus":0.10063900004307619,"score_gpt":0.3788537661111253,"score_spread":0.2782147660680491,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3216852367","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6279804,0.35474437,0.00016801203,0.015402353,0.000044204797,0.0011111642,0.00041305355,0.00001547406,0.00012098435],"genre_scores_gemma":[0.99160093,0.0060781566,0.000059986614,0.00011832935,0.000019641526,0.00020924342,0.00012957712,0.000009383618,0.0017747749],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972715,0.0014068765,0.0005457851,0.00029382415,0.00024373831,0.0002383163],"domain_scores_gemma":[0.99801385,0.0009564498,0.00014866731,0.00022175966,0.00062670064,0.00003254777],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0025482655,0.000110359004,0.00093511556,0.00023593387,0.00014376943,0.000020631353,0.000093189126,0.00011111843,0.0013902168],"category_scores_gemma":[0.0002966938,0.00009368641,0.00024788428,0.0008890753,0.00008540662,0.00010524122,0.00003730511,0.0002013775,0.000016090544],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035350205,0.0001870088,0.042543393,0.052630313,0.17259073,0.000003717846,0.0028385853,0.000047632348,0.7243884,0.00054360664,0.0010544907,0.0028185851],"study_design_scores_gemma":[0.0014590797,0.00030201612,0.21087998,0.0048584477,0.19245777,0.00000858773,0.00026030053,0.000019461006,0.5855538,0.0006867815,0.0029100534,0.00060369965],"about_ca_topic_score_codex":0.0014075431,"about_ca_topic_score_gemma":0.0018018758,"teacher_disagreement_score":0.36362052,"about_ca_system_score_codex":0.000109573804,"about_ca_system_score_gemma":0.00019280176,"threshold_uncertainty_score":0.9995226},"labels":[],"label_agreement":null},{"id":"W3217310573","doi":"10.1016/j.vaccine.2021.11.049","title":"Recombinant Bacillus subtilis flagellin Hag is a potent immunostimulant with reduced proinflammatory properties compared to Salmonella enterica serovar Typhimurium FljB","year":2021,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"PROTEO; Université du Québec à Montréal","funders":"Natural Sciences and Engineering Research Council of Canada; International Development Research Centre; Université du Québec à Montréal","keywords":"Flagellin; TLR5; Proinflammatory cytokine; Salmonella enterica; Microbiology; Biology; Salmonella; Bacillus subtilis; Immune system; Immunology; Bacteria; Innate immune system; Toll-like receptor; Inflammation","score_opus":0.014258704356370739,"score_gpt":0.20951050598723267,"score_spread":0.19525180163086192,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W3217310573","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898448,0.0043016793,0.00012477607,0.0037457545,0.00072867604,0.0007665266,0.000014167988,0.0001511695,0.00032243243],"genre_scores_gemma":[0.98416716,0.00030937002,0.0002847795,0.00045826967,0.000045406956,0.00009183602,0.00024694516,0.00005243032,0.014343779],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977947,0.00033668015,0.0006454747,0.0005543194,0.00009304289,0.00057576835],"domain_scores_gemma":[0.9985514,0.000054279306,0.00018601138,0.00076356623,0.00038629794,0.00005840054],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00028578058,0.00037603194,0.00059557235,0.00018499896,0.00027155087,0.000053699463,0.00028068325,0.00019843523,0.0009978606],"category_scores_gemma":[0.00009224129,0.0002825141,0.00012605739,0.00036391846,0.00003034759,0.00014944408,0.00018784737,0.0003101887,0.0018236482],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045747524,0.00022410722,0.00036854047,0.000076879776,0.00032314612,0.0001175105,0.0019237753,0.000078688274,0.97999716,0.000015375168,0.0092822695,0.003017779],"study_design_scores_gemma":[0.0029664708,0.0005037913,0.009728143,0.00031397003,0.00008251605,0.0004558162,0.00054482,0.00009400546,0.90825397,0.0000095217,0.07662645,0.00042055413],"about_ca_topic_score_codex":0.000107728934,"about_ca_topic_score_gemma":0.000021984211,"teacher_disagreement_score":0.071743235,"about_ca_system_score_codex":0.00011296021,"about_ca_system_score_gemma":0.00025188387,"threshold_uncertainty_score":0.9999627},"labels":[],"label_agreement":null},{"id":"W39943429","doi":"10.1096/fasebj.23.1_supplement.741.7","title":"Mediators Released from LPS‐challenged Lungs into Circulation Induce the Inflammatory Response in Liver Vascular Endothelial Cells","year":2009,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University; Lawson Health Research Institute","funders":"","keywords":"ARDS; Lung; Inflammation; Medicine; Immunology; Lipopolysaccharide; Pathology; Internal medicine","score_opus":0.008417576081427238,"score_gpt":0.21066096083284583,"score_spread":0.2022433847514186,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W39943429","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9927573,0.0042463127,0.000112737034,0.0017998415,0.00068992673,0.00028461326,0.000004701519,0.00003133828,0.00007321566],"genre_scores_gemma":[0.9984101,0.00082737964,0.000018058188,0.00039739464,0.00021242003,0.000007942909,0.000017165148,0.000015549498,0.000094002826],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99594575,0.0028479642,0.0005457229,0.00018335828,0.00013721823,0.00033996438],"domain_scores_gemma":[0.998208,0.0009388586,0.00031034063,0.00042693337,0.00008350882,0.000032345677],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002596702,0.00020513582,0.0002330661,0.00020031408,0.0005321004,0.00005305213,0.0004770635,0.0002840583,0.00033080048],"category_scores_gemma":[0.0004435078,0.00012612736,0.00017824926,0.00016393437,0.00016423731,0.0002582922,0.000042617194,0.0010466623,0.00042921797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032104892,0.000048471098,0.0003743586,0.000002006335,0.00010535346,0.000037248894,0.008875443,0.00012791035,0.98154074,0.00008113342,0.00026322296,0.005333606],"study_design_scores_gemma":[0.00336324,0.00022426945,0.16784152,0.000087278764,0.00008266437,0.0001161922,0.0015476405,0.00012577555,0.8189654,0.0013042417,0.00607851,0.00026327328],"about_ca_topic_score_codex":0.00009881451,"about_ca_topic_score_gemma":0.000023166669,"teacher_disagreement_score":0.16746718,"about_ca_system_score_codex":0.00017591505,"about_ca_system_score_gemma":0.00025061186,"threshold_uncertainty_score":0.5516872},"labels":[],"label_agreement":null},{"id":"W41870505","doi":"10.1016/j.jaci.2009.07.016","title":"Innate immunity","year":2009,"lang":"en","type":"review","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":539,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia; Child and Family Research Institute","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health; Canadian Child Health Clinician Scientist Program","keywords":"Innate immune system; Immunity; Immune system; Immunology; Disease; Biology; Infectious disease (medical specialty); Acquired immune system; Medicine","score_opus":0.04861326506341126,"score_gpt":0.36480122513524627,"score_spread":0.31618796007183503,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W41870505","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007188914,0.9958119,0.000019094754,0.00015505507,0.00250054,0.00016289052,0.0000033498395,0.000020273206,0.0006080467],"genre_scores_gemma":[0.00005807995,0.99812424,0.0000505337,0.00010144298,0.00018570147,0.0000028914126,0.00005281087,0.000028073304,0.0013962206],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99342567,0.0026610268,0.0031949237,0.00026299318,0.000052204974,0.00040320508],"domain_scores_gemma":[0.9951772,0.0013748723,0.0027290564,0.0004522122,0.00022488895,0.000041760544],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0019869702,0.0004486328,0.0031431047,0.0004249575,0.00018290104,0.000026184282,0.00068615586,0.0021032733,0.000348201],"category_scores_gemma":[0.0007951077,0.0003200946,0.0012345882,0.00019020274,0.00059314526,0.00018642764,0.00020029317,0.0031362756,0.0003110624],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003948439,0.00024275288,0.000001515614,0.00014977064,0.0067060823,0.000051711075,0.00003618526,6.480937e-8,0.00004733728,0.0006109586,0.0014206221,0.99033815],"study_design_scores_gemma":[0.0012604886,0.0017662537,0.00026051444,0.0025722974,0.00088675885,0.002408668,0.000038709753,8.1953374e-8,0.000021361377,0.00028059093,0.990215,0.00028927156],"about_ca_topic_score_codex":0.000009108413,"about_ca_topic_score_gemma":0.000005314004,"teacher_disagreement_score":0.9900489,"about_ca_system_score_codex":0.00005382361,"about_ca_system_score_gemma":0.00050733,"threshold_uncertainty_score":0.99992514},"labels":[],"label_agreement":null},{"id":"W4200025350","doi":"10.3791/2142-v","title":"Detection of Neu1 Sialidase Activity in Regulating TOLL-like Receptor Activation","year":2010,"lang":"en","type":"article","venue":"Journal of Visualized Experiments","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Receptor; Sialidase; Cell biology; Signal transduction; Biology; Chemistry; Immunology; Biochemistry; Virus","score_opus":0.01757773123204235,"score_gpt":0.36479872715584827,"score_spread":0.3472209959238059,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200025350","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978831,0.00009364038,0.0005196268,0.00005326988,0.0012389048,0.00012704759,6.801984e-7,0.000008478438,0.00007526748],"genre_scores_gemma":[0.99954635,0.0000151852455,0.00021916062,0.000015485251,0.00005284314,0.0000049580876,0.000004518537,0.000010712584,0.0001307849],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987883,0.0003150613,0.00057441543,0.00009538063,0.00007632516,0.00015050852],"domain_scores_gemma":[0.9988076,0.00010783178,0.00080717145,0.00013041534,0.00013115331,0.00001580989],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000604675,0.00010937011,0.00028774035,0.0002936467,0.00006634319,0.0000112870275,0.00010664061,0.0002118274,0.00018459297],"category_scores_gemma":[0.000240852,0.00009787724,0.000102228034,0.00014989224,0.000051678107,0.00043340606,0.000027283353,0.00035950367,0.000013604207],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025750624,0.00022523232,0.00027947882,0.000008986592,0.00005591502,7.223308e-7,0.0009618167,0.0000031108368,0.9857664,0.000029295512,0.000050210205,0.010043763],"study_design_scores_gemma":[0.0028158573,0.00028163454,0.0043257903,0.000069225156,0.000009980057,0.000024234332,0.00027869095,0.000017059932,0.9896354,0.000020627602,0.0024375464,0.00008397326],"about_ca_topic_score_codex":0.000054830656,"about_ca_topic_score_gemma":0.000004211942,"teacher_disagreement_score":0.009959789,"about_ca_system_score_codex":0.00006292534,"about_ca_system_score_gemma":0.00006162745,"threshold_uncertainty_score":0.39913177},"labels":[],"label_agreement":null},{"id":"W4200101369","doi":"10.3390/immuno2010002","title":"Macrophages and Epithelial Cells Mutually Interact through NLRP3 to Clear Infection and Enhance the Gastrointestinal Barrier","year":2021,"lang":"en","type":"article","venue":"Immuno","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; University of Alberta","funders":"Canadian Institutes of Health Research","keywords":"Inflammasome; Citrobacter rodentium; Secretion; Proinflammatory cytokine; Barrier function; Cell biology; Interleukin 22; Macrophage; Microbiology; Biology; Cytokine; Pathogen; Tight junction; Epithelium; Inflammation; Immunology; Chemistry; Interleukin; In vitro","score_opus":0.005863396384165631,"score_gpt":0.24389455263582416,"score_spread":0.23803115625165852,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200101369","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99466014,0.0025779482,0.00071815704,0.00070872274,0.00048260475,0.00014420519,0.000010309168,0.000032786094,0.0006651395],"genre_scores_gemma":[0.9951139,0.0005125056,0.00027072302,0.0003853931,0.0000441399,0.000013902586,0.000016853877,0.0000133813855,0.003629189],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903905,0.00027485334,0.0002179231,0.00021716616,0.000027810553,0.0002231993],"domain_scores_gemma":[0.9994476,0.00015972786,0.00006720602,0.000225676,0.00008687336,0.00001295017],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002104979,0.00013769911,0.00015203882,0.000033734177,0.0002779787,0.000066570305,0.00007833355,0.0000704468,0.0003738582],"category_scores_gemma":[0.00015238774,0.0001054985,0.00004370354,0.00008699107,0.00014427464,0.00018233598,0.00015170738,0.00025861277,0.00040398515],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000400789,0.00001998016,0.0001929198,0.0000100743755,0.0000355544,0.000011052069,0.0013153161,0.0000021562037,0.9894321,0.00027021742,0.00031880234,0.007991018],"study_design_scores_gemma":[0.00038978722,0.0002961282,0.021439191,0.00006828847,0.000021765918,0.00071445503,0.00044792207,0.000002791824,0.9153957,0.00008205906,0.061023146,0.00011879821],"about_ca_topic_score_codex":0.00019185322,"about_ca_topic_score_gemma":0.00003348722,"teacher_disagreement_score":0.07403646,"about_ca_system_score_codex":0.000029070576,"about_ca_system_score_gemma":0.00004617864,"threshold_uncertainty_score":0.5192547},"labels":[],"label_agreement":null},{"id":"W4200471645","doi":"10.1007/978-1-0716-1892-9_9","title":"Adjuvants: Engineering Protective Immune Responses in Human and Veterinary Vaccines","year":2021,"lang":"en","type":"review","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Immune system; Vaccine adjuvant; Acquired immune system; Adjuvant; Antigen; Immunology; Medicine; Innate immune system","score_opus":0.04216567438581861,"score_gpt":0.41916464214715166,"score_spread":0.376998967761333,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200471645","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018818605,0.9810026,0.015747827,0.000015737494,0.00041864006,0.0008501684,0.000009044891,0.000036083162,0.000038032624],"genre_scores_gemma":[0.000048382517,0.9722398,0.02666859,0.000014899422,0.00002014991,0.00054858974,0.00023842716,0.000060979135,0.00016020522],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9893217,0.008576765,0.0009851197,0.0006343798,0.000017402552,0.00046462985],"domain_scores_gemma":[0.99825627,0.0009322662,0.0002754911,0.00048104645,0.000040927243,0.000014001907],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0022932342,0.0004830354,0.0020981724,0.00096476317,0.000060141363,0.0000137440975,0.00028481736,0.0011974331,0.000058756126],"category_scores_gemma":[0.0015217956,0.00043951068,0.00024840469,0.00046445022,0.000110525,0.00004438404,0.00038384506,0.001042538,0.000010635011],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060677467,0.000033322314,0.000006171046,0.0010477556,0.00016677775,0.00013764155,0.0000819172,9.724048e-7,0.49296132,0.00055016164,0.0000014630541,0.50495183],"study_design_scores_gemma":[0.0013091252,0.0006680168,0.00018114423,0.008896624,0.00020516184,0.0011034401,0.00007155274,0.0000034216766,0.057288088,0.00036513555,0.92897666,0.0009316556],"about_ca_topic_score_codex":0.00006923539,"about_ca_topic_score_gemma":0.0000033003462,"teacher_disagreement_score":0.92897516,"about_ca_system_score_codex":0.000114355746,"about_ca_system_score_gemma":0.00013294553,"threshold_uncertainty_score":0.9998057},"labels":[],"label_agreement":null},{"id":"W4200488061","doi":"10.3390/vaccines10010014","title":"The Signal Peptide and Chaperone UNC93B1 Both Influence TLR8 Ectodomain Intracellular Endosomal Localization","year":2021,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Natural Science Foundation of China","keywords":"Ectodomain; Endosome; Cell biology; Intracellular; Biology; Innate immune system; Receptor; Biochemistry","score_opus":0.004880369838693835,"score_gpt":0.19937734795102946,"score_spread":0.19449697811233563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4200488061","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98418057,0.0132950945,0.0010710252,0.0008577995,0.00018806629,0.00011929594,0.0000020468901,0.000047011075,0.00023910854],"genre_scores_gemma":[0.9955852,0.0010451825,0.000035660592,0.0001408148,0.000045241934,0.000014262009,0.000058376387,0.000011131338,0.0030641302],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99906456,0.00025442123,0.00023563446,0.00018520527,0.000031048006,0.00022911115],"domain_scores_gemma":[0.99936986,0.0002474549,0.00007929933,0.0001938089,0.00009626601,0.00001329509],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002416229,0.000119997516,0.00013397318,0.000039667302,0.0004246978,0.000049019356,0.00009774973,0.00011736709,0.00020093858],"category_scores_gemma":[0.0001910968,0.0000865572,0.0000336354,0.00013757455,0.000067751396,0.00016105174,0.00007439286,0.00013119262,0.00012304333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002212723,0.000024423385,0.0028656013,0.000013712917,0.00006719777,0.00001348948,0.00031048633,0.00010227096,0.98411816,0.0027897693,0.0011121937,0.008361413],"study_design_scores_gemma":[0.0011254705,0.000104013016,0.0365799,0.00003805965,0.00003596397,0.00023627555,0.0004099515,0.0001966499,0.8080459,0.0004799522,0.15256763,0.00018023344],"about_ca_topic_score_codex":0.000037326554,"about_ca_topic_score_gemma":0.00004625084,"teacher_disagreement_score":0.17607225,"about_ca_system_score_codex":0.000015875701,"about_ca_system_score_gemma":0.0000621706,"threshold_uncertainty_score":0.35297003},"labels":[],"label_agreement":null},{"id":"W4206986038","doi":"10.1097/shk.0000000000001915","title":"Functional Transcriptomic Studies of Immune Responses and Endotoxin Tolerance in Early Human Sepsis","year":2022,"lang":"en","type":"article","venue":"Shock","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"National Heart, Lung, and Blood Institute","keywords":"Sepsis; Immune system; Ex vivo; In vivo; Inflammation; Transcriptome","score_opus":0.027728841833412152,"score_gpt":0.26975837536228553,"score_spread":0.24202953352887338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4206986038","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98366565,0.015482955,0.0000074635877,0.00021323512,0.00027365904,0.00014857571,0.0000152212215,0.000017040415,0.00017619393],"genre_scores_gemma":[0.99590826,0.00012889213,0.0000112960515,0.00004030067,0.000007187236,0.000044806882,0.00002518937,0.000007144292,0.0038269006],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99896586,0.00037823143,0.00032681323,0.00014480558,0.000035952016,0.00014833733],"domain_scores_gemma":[0.99961644,0.00014073175,0.0000817234,0.00012828232,0.000028489882,0.0000043521627],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00038991706,0.00008918961,0.0002276856,0.0001776089,0.0002227837,0.0000031409836,0.000079666956,0.000046971396,0.0002933744],"category_scores_gemma":[0.00004143528,0.0000898228,0.000055526412,0.00012303487,0.00013286647,0.00007248387,0.000061187005,0.00019827583,0.000016498536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013943153,0.000041750445,0.0034266452,0.000018474588,0.00009094069,0.000002971987,0.0028270117,0.000030783187,0.9901001,0.00087406585,0.0003904756,0.00080245617],"study_design_scores_gemma":[0.0025184986,0.0004942397,0.32687014,0.000033413035,0.000025442489,0.000041397558,0.0022559373,0.000004400146,0.65817106,0.0003756867,0.00904974,0.00016005462],"about_ca_topic_score_codex":0.0001074191,"about_ca_topic_score_gemma":0.000024830479,"teacher_disagreement_score":0.33192906,"about_ca_system_score_codex":0.000033637523,"about_ca_system_score_gemma":0.000033334527,"threshold_uncertainty_score":0.36628675},"labels":[],"label_agreement":null},{"id":"W4210585739","doi":"10.21203/rs.3.rs-28977/v1","title":"S. Aureus Lipoteichoic Acid Failed to Activate NLRP3, but Downregulated the Transduction of NLRP3/MAPK and NF-κB Signaling Pathway in Mouse Mastitis Induced by S. Aureus","year":2020,"lang":"en","type":"preprint","venue":"Research Square (Research Square)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Natural Science Foundation of China","keywords":"Lipoteichoic acid; MAPK/ERK pathway; Inflammation; Signal transduction; Staphylococcus aureus; Innate immune system; Immune system; NF-κB; Mastitis; Mammary gland; Immunology; Cell biology; Chemistry; Biology; Medicine; Microbiology; Internal medicine; Bacteria","score_opus":0.06178101398819199,"score_gpt":0.3423510422098112,"score_spread":0.28057002822161925,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4210585739","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9797647,0.005570652,0.0003588172,0.007578806,0.0003984117,0.0053983857,0.00054562744,0.00017583689,0.00020877554],"genre_scores_gemma":[0.9945458,0.0012793067,0.0000683569,0.00004367871,0.00020001805,0.0010642053,0.0011242469,0.00015558004,0.001518764],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9815813,0.010883139,0.0016221338,0.0018981686,0.0014889464,0.0025263398],"domain_scores_gemma":[0.9929683,0.0025316256,0.0003541865,0.0017860336,0.0020336346,0.00032617722],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.01109946,0.000852003,0.0013941005,0.0026118679,0.0011237726,0.00037119893,0.002028987,0.0020240578,0.00081338675],"category_scores_gemma":[0.004347762,0.0007175655,0.0003580384,0.002623562,0.0012306463,0.00045388087,0.002230615,0.009018325,0.0004161742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039516226,0.0003464591,0.00013384777,0.001016068,0.00042248185,0.000051990366,0.0070953197,0.00023255321,0.96740484,0.00022564767,0.002771481,0.016347682],"study_design_scores_gemma":[0.0022547846,0.0017337515,0.002385136,0.0011818745,0.000024944244,0.0000128473,0.0037218838,0.00013396668,0.9791822,0.00081185636,0.007895756,0.0006609903],"about_ca_topic_score_codex":0.0054196017,"about_ca_topic_score_gemma":0.00037140123,"teacher_disagreement_score":0.015686693,"about_ca_system_score_codex":0.0008491023,"about_ca_system_score_gemma":0.0017316287,"threshold_uncertainty_score":0.9995276},"labels":[],"label_agreement":null},{"id":"W4213042773","doi":"10.3389/fphar.2022.835081","title":"Pentamidine Alleviates Inflammation and Lipopolysaccharide-Induced Sepsis by Inhibiting TLR4 Activation via Targeting MD2","year":2022,"lang":"en","type":"article","venue":"Frontiers in Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Beijing National Laboratory for Molecular Sciences; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"TLR4; Lipopolysaccharide; Inflammation; Sepsis; Pentamidine; Medicine; Pharmacology; Chemistry; Immunology; Pneumonia; Internal medicine","score_opus":0.006949717152396397,"score_gpt":0.23691820698731278,"score_spread":0.22996848983491638,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213042773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921565,0.0019555532,0.0013504636,0.0017589325,0.002113478,0.00045740837,0.000008288097,0.00007740404,0.00012195566],"genre_scores_gemma":[0.99820685,0.00019469246,0.00021226595,0.0003088199,0.000075039876,0.00020323336,0.0004243487,0.000023872795,0.00035084673],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978916,0.00079141936,0.0005153475,0.00033714343,0.000060702812,0.0004037886],"domain_scores_gemma":[0.9994072,0.00014455889,0.00030556525,0.00008178569,0.000040552583,0.00002038812],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00077858585,0.00019469358,0.0003020841,0.0003787164,0.0005086869,0.000014796856,0.00016266936,0.0001611591,0.00078547467],"category_scores_gemma":[0.000079730766,0.00022425342,0.00004797077,0.000215931,0.00007283074,0.0003417645,0.00021798082,0.00058133045,0.000020404697],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045881906,0.00005237295,0.0016808164,0.00001782258,0.00011263768,0.0000039892684,0.0010227809,0.00008283245,0.9406196,0.000026396223,0.038829546,0.017092422],"study_design_scores_gemma":[0.0020054274,0.00015554261,0.000281959,0.000008519732,0.00004113816,0.000019908877,0.001549973,0.001130375,0.9726519,0.00017320708,0.021755263,0.00022679889],"about_ca_topic_score_codex":0.00012032223,"about_ca_topic_score_gemma":0.0000018957758,"teacher_disagreement_score":0.032032326,"about_ca_system_score_codex":0.00024473935,"about_ca_system_score_gemma":0.000047141402,"threshold_uncertainty_score":0.9144789},"labels":[],"label_agreement":null},{"id":"W4213207054","doi":"10.1093/jcag/gwab049.039","title":"A40 IDENTIFYING NOVEL ROLES FOR TLR2 SIGNALING IN THE INTESTINAL EPITHELIUM USING ORGANOIDS","year":2022,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"","keywords":"TLR2; Biology; CXCL1; Innate immune system; Organoid; Chemokine; Immunology; Toll-like receptor; CCL20; Intestinal epithelium; Receptor; Immune system; Cell biology; Microbiology; Epithelium; Chemokine receptor","score_opus":0.018012958353702264,"score_gpt":0.23909722552404425,"score_spread":0.221084267170342,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213207054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9917597,0.00008224144,0.0008652774,0.0062074824,0.00088315335,0.00016035493,0.000023763057,0.0000016179031,0.00001640054],"genre_scores_gemma":[0.99887455,0.0000026120233,0.00017656291,0.0007511817,0.00004867567,0.000005775285,0.000007881559,0.000007919421,0.00012485203],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99812526,0.00087490346,0.0005503943,0.00006950988,0.00009081311,0.00028911128],"domain_scores_gemma":[0.99832356,0.00025672148,0.0010951727,0.0001035712,0.00020606015,0.00001492252],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031293095,0.00007849437,0.0002244329,0.00030860174,0.00039207982,0.000015427577,0.00045315636,0.000076944045,0.00007233869],"category_scores_gemma":[0.0006310264,0.00005859002,0.00016110987,0.00014549849,0.000044678643,0.00008239491,0.000047814694,0.00047018935,0.0000012610883],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009887448,0.00009104453,0.2760864,0.000015055713,0.0002905287,0.0000038634753,0.0028314579,0.0047563454,0.71259046,0.0003530255,0.0018661545,0.00012695306],"study_design_scores_gemma":[0.030388346,0.0074283998,0.7223688,0.00052386674,0.0013749846,0.0070158797,0.02321167,0.0022688778,0.12906538,0.0028279303,0.07279373,0.0007321717],"about_ca_topic_score_codex":0.0016437413,"about_ca_topic_score_gemma":0.030648425,"teacher_disagreement_score":0.58352506,"about_ca_system_score_codex":0.0008824634,"about_ca_system_score_gemma":0.00039257473,"threshold_uncertainty_score":0.9870397},"labels":[],"label_agreement":null},{"id":"W4213259216","doi":"10.4049/jimmunol.2100664","title":"Regulation of MHC Class I Expression in Lung Epithelial Cells during Inflammation","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Institute for Research in Immunology and Cancer","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"MHC class I; Chemokine; MHC class II; Biology; Cell biology; Inflammation; Immunology; Major histocompatibility complex; Antigen presentation; Respiratory epithelium; Downregulation and upregulation; CD8; T cell; Epithelium; Immune system; Gene","score_opus":0.005548747921499112,"score_gpt":0.2105820819077501,"score_spread":0.20503333398625098,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213259216","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99575,0.002568115,0.00014595776,0.00040474397,0.0008687003,0.00014807557,0.000002972268,0.00000699909,0.00010444267],"genre_scores_gemma":[0.9992268,0.0002898407,0.000021133592,0.0000102139265,0.00003592279,0.0000055166092,0.00000983498,0.00000955126,0.00039120275],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997361,0.0015019345,0.00080620765,0.00006902023,0.00007455786,0.00018725502],"domain_scores_gemma":[0.99846154,0.00024474616,0.00096558104,0.00021943214,0.000103751736,0.000004966845],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001412084,0.0000989919,0.00026694796,0.00037504922,0.00021724217,0.0000032766127,0.00033582418,0.000116494346,0.00048789548],"category_scores_gemma":[0.00008651124,0.00007462159,0.00008562681,0.00019453414,0.00011928371,0.00018517199,0.00016062119,0.00057593494,0.00001579146],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034404693,0.000045464698,0.00015156728,0.000013087248,0.00007378151,0.0000029462415,0.0024980472,0.0030414409,0.9891553,0.00015619819,0.000118205295,0.0013034758],"study_design_scores_gemma":[0.0018510055,0.00027567675,0.03422254,0.000035708734,0.000028822602,0.00030951508,0.0011639817,0.000036529353,0.9594245,0.00021519043,0.002368585,0.000067941866],"about_ca_topic_score_codex":0.000021184418,"about_ca_topic_score_gemma":0.0000028038844,"teacher_disagreement_score":0.034070972,"about_ca_system_score_codex":0.00013478925,"about_ca_system_score_gemma":0.00008535427,"threshold_uncertainty_score":0.53421134},"labels":[],"label_agreement":null},{"id":"W4213350133","doi":"10.1016/j.jbc.2022.101747","title":"Interplay between nuclear factor-κB, p38 MAPK, and glucocorticoid receptor signaling synergistically induces functional TLR2 in lung epithelial cells","year":2022,"lang":"en","type":"article","venue":"Journal of Biological Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Heart, Lung, and Blood Institute; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Glucocorticoid receptor; Cell biology; MAPK/ERK pathway; Signal transduction; Nuclear receptor; Glucocorticoid; TLR2; p38 mitogen-activated protein kinases; Lung; Receptor; Chemistry; Biology; Internal medicine; Endocrinology; Transcription factor; Medicine; Biochemistry; Gene; TLR4","score_opus":0.016517431930618883,"score_gpt":0.23996811655156178,"score_spread":0.2234506846209429,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4213350133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9985081,0.0006509984,0.000060897906,0.00017367805,0.00035893478,0.00006777022,0.000041132927,0.000011765968,0.00012672256],"genre_scores_gemma":[0.9993945,0.00008097062,0.000051408646,0.00006836627,0.00013460183,0.000003143161,0.00004750229,0.000008802972,0.0002107465],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986142,0.00024664402,0.0006441635,0.00018379772,0.000076729186,0.00023449013],"domain_scores_gemma":[0.9990268,0.00042663046,0.00036575907,0.000087159344,0.00005941248,0.000034259185],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004913725,0.00014984254,0.00036196448,0.00006783408,0.00013605563,0.000019123618,0.0002060165,0.0002578071,0.0041707894],"category_scores_gemma":[0.00022808446,0.00011602656,0.00011770386,0.00009348185,0.00013008915,0.00007360539,0.0001789118,0.00093469105,0.000029668088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009361612,0.00007503472,0.0024924823,0.000021508335,0.00009738287,0.000016318114,0.00011976252,0.00003871965,0.99482644,0.000018163051,0.00022872236,0.0011293207],"study_design_scores_gemma":[0.0010421653,0.0003675089,0.010651559,0.000036035937,0.000023208835,0.00013805667,0.0005256192,0.000008740787,0.9767304,0.000057414447,0.010247772,0.00017154137],"about_ca_topic_score_codex":0.0000037620696,"about_ca_topic_score_gemma":4.969222e-8,"teacher_disagreement_score":0.018096047,"about_ca_system_score_codex":0.00012110956,"about_ca_system_score_gemma":0.000073681935,"threshold_uncertainty_score":0.9967395},"labels":[],"label_agreement":null},{"id":"W4220804966","doi":"10.3389/fimmu.2022.862992","title":"Mice Dually Disrupted for Nod2 and Mincle Manifest Early Bacteriological Control but Late Susceptibility During Mycobacterium tuberculosis Infection","year":2022,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University Health Centre; McGill University","keywords":"NOD2; Tuberculosis; Mycobacterium tuberculosis; Microbiology; Immunology; Medicine; Biology; Infection control; Virology; Immune system; Innate immune system; Pathology","score_opus":0.005187566852763302,"score_gpt":0.20293426688704372,"score_spread":0.1977467000342804,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220804966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.992868,0.0024243493,0.0005584233,0.0003844187,0.0027159888,0.0008043852,0.00009636046,0.00009575572,0.00005230436],"genre_scores_gemma":[0.99787176,0.00033944892,0.00017157705,0.00007936494,0.000031099506,0.00038791908,0.0002716754,0.000024615765,0.00082251366],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973518,0.00096165866,0.00056241924,0.00050459284,0.00003626133,0.0005832142],"domain_scores_gemma":[0.9992244,0.00019196405,0.00020023911,0.00030009553,0.0000647971,0.000018499331],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0006031549,0.000256863,0.00052853604,0.00030456064,0.0005693049,0.000024200586,0.00018850031,0.00036557126,0.00024388843],"category_scores_gemma":[0.00017832199,0.00026611896,0.00012934975,0.00016801825,0.0003190549,0.00021002932,0.00023953586,0.0005709385,0.000023249417],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005632939,0.00014991117,0.14501154,0.000043708023,0.00031574798,0.000010389125,0.0006427775,0.000018653282,0.8459043,0.00005856344,0.00017938847,0.0020320578],"study_design_scores_gemma":[0.0054304725,0.0009699964,0.96030444,0.000014399706,0.00007046997,0.00017304118,0.00041780111,0.000048451115,0.025068093,0.00017528428,0.0070062364,0.00032130873],"about_ca_topic_score_codex":0.00043321654,"about_ca_topic_score_gemma":0.00005703031,"teacher_disagreement_score":0.82083625,"about_ca_system_score_codex":0.000264057,"about_ca_system_score_gemma":0.00004921849,"threshold_uncertainty_score":0.9999791},"labels":[],"label_agreement":null},{"id":"W4220835813","doi":"10.1371/journal.pone.0264911","title":"Effects of equine SALSA on neutrophil phagocytosis and macrophage cytokine production","year":2022,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Phagocytosis; SALSA; Macrophage inflammatory protein; Cytokine; Proinflammatory cytokine; Chemistry; Interleukin 8; Lipopolysaccharide; Tumor necrosis factor alpha; Microbiology; Interleukin; Molecular biology; Biology; Inflammation; Immunology","score_opus":0.01469078671491036,"score_gpt":0.19739479724612607,"score_spread":0.1827040105312157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220835813","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99590975,0.0028632365,0.0000025599966,0.00051214575,0.00016671632,0.00037157896,0.000010217944,0.00004240929,0.0001213688],"genre_scores_gemma":[0.99789,0.00037811295,0.000028338147,0.00007296485,0.00003666221,0.000092115035,0.00005807112,0.000013429733,0.0014303145],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999123,0.0002807081,0.00018989886,0.00018876824,0.000062374806,0.00015526987],"domain_scores_gemma":[0.99955404,0.000108348344,0.00011343958,0.0001764993,0.00003910961,0.000008587245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020266543,0.000099431265,0.00022461248,0.00013126232,0.00018655171,0.0000034615332,0.00008034605,0.000056669134,0.00022144621],"category_scores_gemma":[0.00013143684,0.000097165204,0.0000322992,0.00013281903,0.00006753976,0.000054139557,0.000101117745,0.00022368408,0.000052980893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001170135,0.0009814901,0.0001087182,0.0001608795,0.00024749376,0.0000047102617,0.00018743525,0.000007845074,0.99413574,0.00019068707,0.00015002173,0.0026548645],"study_design_scores_gemma":[0.0010622775,0.0017512707,0.0032373092,0.00007373878,0.00012334474,0.000013498074,0.000026518384,0.0000044371895,0.99294275,0.000062969346,0.0006136177,0.000088293935],"about_ca_topic_score_codex":0.000015860202,"about_ca_topic_score_gemma":4.4790616e-7,"teacher_disagreement_score":0.003128591,"about_ca_system_score_codex":0.00003652734,"about_ca_system_score_gemma":0.000016407994,"threshold_uncertainty_score":0.3962282},"labels":[],"label_agreement":null},{"id":"W4220959054","doi":"10.1016/j.isci.2022.104160","title":"A Foxo1-Klf2-S1pr1-Gnai1-Rac1 signaling axis is a critical mediator of Ostm1 regulatory network in T lymphopoiesis","year":2022,"lang":"en","type":"article","venue":"iScience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal; Montreal Clinical Research Institute","funders":"Canadian Institutes of Health Research","keywords":"Biology; Lymphopoiesis; Population; Bone marrow; Cell biology; KLF2; T cell; RAC1; FOXO1; Haematopoiesis; Signal transduction; Immunology; Stem cell; Downregulation and upregulation; Immune system; Genetics; Medicine","score_opus":0.010098114173889524,"score_gpt":0.24383585755947618,"score_spread":0.23373774338558664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220959054","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9902536,0.0072065694,0.00014482386,0.0007924711,0.00067867764,0.00014607619,0.000012747879,0.000030401101,0.0007346326],"genre_scores_gemma":[0.9986945,0.000028422497,0.00016693602,0.00036910962,0.000029961346,0.00005029253,0.00000872722,0.0000087080525,0.0006433417],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99827296,0.00041431017,0.00043405624,0.0003050492,0.00013191851,0.00044171946],"domain_scores_gemma":[0.9989956,0.0004934877,0.00012156702,0.0003076901,0.000060506696,0.000021157979],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013170087,0.00011975331,0.000246161,0.00018622474,0.00038678237,0.000011471181,0.00040782205,0.00009867855,0.0017145197],"category_scores_gemma":[0.0003932894,0.00012029405,0.00008645327,0.00065638113,0.00046760938,0.00018505701,0.00026958092,0.00021975247,0.000083487736],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038512764,0.00013656939,0.0049271216,0.00003051217,0.00003065844,0.000018511253,0.004067753,0.0006163229,0.9724463,0.004438253,0.005761779,0.0071410644],"study_design_scores_gemma":[0.0018993892,0.0006698086,0.028178953,0.00014827545,0.000055900175,0.00018605097,0.0046935296,0.0006686456,0.90232974,0.0028649936,0.057694167,0.0006105702],"about_ca_topic_score_codex":0.00009200074,"about_ca_topic_score_gemma":0.000008448757,"teacher_disagreement_score":0.07011661,"about_ca_system_score_codex":0.000109046225,"about_ca_system_score_gemma":0.00026375754,"threshold_uncertainty_score":0.999198},"labels":[],"label_agreement":null},{"id":"W4220978613","doi":"10.1038/s41590-022-01163-9","title":"Mechanisms of innate and adaptive immunity to the Pfizer-BioNTech BNT162b2 vaccine","year":2022,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":484,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Open Philanthropy Project; Sanofi; National Institute of Allergy and Infectious Diseases; Bill and Melinda Gates Foundation; Parker Institute for Cancer Immunotherapy; National Institutes of Health; U.S. Department of Health and Human Services; Genentech; Howard Hughes Medical Institute","keywords":"Pyroptosis; Inflammasome; Innate immune system; Acquired immune system; Immunization; Immunology; Immune system; T cell; Biology; Inflammation","score_opus":0.0051714364201018975,"score_gpt":0.2209199048663362,"score_spread":0.2157484684462343,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220978613","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96088004,0.028042082,0.0008941895,0.006479771,0.002058447,0.00076029124,0.00008204252,0.00008251685,0.00072060456],"genre_scores_gemma":[0.9975468,0.00014597397,0.000104905164,0.0007186288,0.000011525084,0.00010559451,0.000107094966,0.000017866165,0.0012416026],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803525,0.00092981657,0.00037682103,0.00026086837,0.00006176441,0.00033545372],"domain_scores_gemma":[0.99881244,0.0002817424,0.00021740024,0.000535782,0.00014166039,0.000010997129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084133586,0.0001944435,0.0003510508,0.0002714052,0.0006143566,0.0000067181727,0.0005628139,0.00041883517,0.00068305724],"category_scores_gemma":[0.00020885821,0.00014796136,0.00008200724,0.00042584407,0.000120110264,0.00007144721,0.00079583307,0.0017561968,0.00007742615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022000792,0.00007647772,0.000030665076,0.0000044338717,0.00031277453,0.0000036367892,0.001053857,0.000012203744,0.9472692,0.038055908,0.0020347051,0.008946033],"study_design_scores_gemma":[0.002514545,0.0023394823,0.020129886,0.000020470474,0.00008328277,0.00056489767,0.0038845548,0.000012101868,0.74122024,0.005196542,0.22369725,0.00033676243],"about_ca_topic_score_codex":0.00022474071,"about_ca_topic_score_gemma":0.000041344967,"teacher_disagreement_score":0.22166254,"about_ca_system_score_codex":0.00006862022,"about_ca_system_score_gemma":0.00007329702,"threshold_uncertainty_score":0.7629899},"labels":[],"label_agreement":null},{"id":"W4220994403","doi":"10.1172/jci140869","title":"Tankyrase represses autoinflammation through the attenuation of TLR2 signaling","year":2022,"lang":"en","type":"article","venue":"Journal of Clinical Investigation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Michael's Hospital; Hospital for Sick Children; SickKids Foundation; University Health Network; University of Toronto; Toronto Centre for Phenogenomics; Princess Margaret Cancer Centre","funders":"Japan Society for the Promotion of Science; Daiichi Sankyo Foundation of Life Science; Toray Science Foundation; Japan Intractable Diseases Research Foundation; Japan Foundation for Applied Enzymology","keywords":"Syk; TLR2; Phosphorylation; Inflammation; Signal transducing adaptor protein; Cell biology; Tyrosine phosphorylation; Signal transduction; Cancer research; Biology; Proto-oncogene tyrosine-protein kinase Src; TRIF; Cytokine; Innate immune system; Immunology; Tyrosine kinase; Toll-like receptor; TLR4; Immune system","score_opus":0.07134989035841112,"score_gpt":0.34908553086792554,"score_spread":0.27773564050951444,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4220994403","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922791,0.00083870743,0.0015341757,0.0037111668,0.001233452,0.00016775657,0.0000034901998,0.000011924066,0.00022024318],"genre_scores_gemma":[0.99871624,0.00008106685,0.00040444036,0.00031090569,0.00015624429,0.000008207666,0.00004234431,0.000008179007,0.0002723794],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995903,0.0017703305,0.0019432985,0.00010780527,0.00016576824,0.00010975421],"domain_scores_gemma":[0.99551594,0.0013122992,0.002589342,0.00020928786,0.00035875334,0.00001435061],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0045498004,0.0000867898,0.000315326,0.00008658191,0.00028218477,0.0000131818515,0.00024767747,0.000110453664,0.00038186932],"category_scores_gemma":[0.0028895258,0.00006230555,0.00021765348,0.00022293028,0.00024098452,0.00040485788,0.00006487171,0.00059635966,0.000018909574],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012876547,0.00016219253,0.010203146,0.00003609859,0.00033130325,0.0000048069965,0.0034919907,0.009029676,0.94620675,0.0050092055,0.009581826,0.014655331],"study_design_scores_gemma":[0.003612896,0.0017120612,0.051381398,0.00017486773,0.00036679272,0.00024894485,0.0026840274,0.000716865,0.8362688,0.024468899,0.07811372,0.0002507641],"about_ca_topic_score_codex":0.000021410979,"about_ca_topic_score_gemma":0.0000010672875,"teacher_disagreement_score":0.109938,"about_ca_system_score_codex":0.000036027257,"about_ca_system_score_gemma":0.0002712415,"threshold_uncertainty_score":0.41812012},"labels":[],"label_agreement":null},{"id":"W4221017497","doi":"10.1155/2022/9946439","title":"Extracellular Cardiolipin Modulates Select Immune Functions of Astrocytes in Toll-Like Receptor (TLR) 4-Dependent Manner","year":2022,"lang":"en","type":"article","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Toll-like receptor; Extracellular; Immune system; Cardiolipin; Receptor; Cell biology; Toll; Immunology; Chemistry; Biology; Innate immune system; Biochemistry","score_opus":0.004700784668436346,"score_gpt":0.19349288577966453,"score_spread":0.18879210111122818,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221017497","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99301964,0.004887634,0.00019853858,0.00013614798,0.0011148164,0.000410558,0.000034192275,0.000041208514,0.00015727803],"genre_scores_gemma":[0.99732226,0.00011142793,0.000061453386,0.0000032895214,0.00004687436,0.00014306545,0.0006376458,0.000019890338,0.0016540906],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99784225,0.0005577272,0.0009493383,0.0002219433,0.00015385872,0.00027490177],"domain_scores_gemma":[0.9988612,0.00015889714,0.00051746145,0.00031975418,0.00012764278,0.000015073017],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010007008,0.00017898927,0.00042489852,0.00053001574,0.00015730278,0.0000057618786,0.00022490982,0.00015906185,0.0013686137],"category_scores_gemma":[0.00016061791,0.00018629388,0.00015419918,0.00036184612,0.0000896521,0.00022306958,0.00011746454,0.00033842545,0.00008522644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005746893,0.00007841638,0.0033967446,0.000050433915,0.00013468212,0.0000017682544,0.0013419549,0.0051374203,0.983894,0.00033395627,0.0003447581,0.00471121],"study_design_scores_gemma":[0.00167873,0.00029207257,0.010312108,0.000035461395,0.000046819787,0.00001849855,0.0016872068,0.00017343267,0.9717009,0.000039195664,0.013817046,0.00019850946],"about_ca_topic_score_codex":0.00013965805,"about_ca_topic_score_gemma":0.000017172473,"teacher_disagreement_score":0.013472288,"about_ca_system_score_codex":0.00014631182,"about_ca_system_score_gemma":0.000116344505,"threshold_uncertainty_score":0.99954426},"labels":[],"label_agreement":null},{"id":"W4221111533","doi":"10.1038/s41598-022-07804-1","title":"Valosin-containing protein-regulated endoplasmic reticulum stress causes NOD2-dependent inflammatory responses","year":2022,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Leibniz-Gemeinschaft; Daimler und Benz Stiftung; China Scholarship Council; Leona M. and Harry B. Helmsley Charitable Trust; Care-for-Rare Foundation; Bayerische Forschungsstiftung; Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"NOD2; Proinflammatory cytokine; Unfolded protein response; Muramyl dipeptide; CXCL2; Gene knockdown; Tunicamycin; Cell biology; Endoplasmic reticulum; CXCL1; Biology; Mutant; Chemistry; Inflammation; Immunology; Genetics; Chemokine; Cell culture; Immune system; Gene; Innate immune system","score_opus":0.009718985970858008,"score_gpt":0.22137879038845792,"score_spread":0.2116598044175999,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4221111533","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9887671,0.00116969,0.000013588958,0.00017713397,0.008049619,0.00085491216,0.00001767065,0.00024268539,0.00070763845],"genre_scores_gemma":[0.9597631,0.000003433436,0.000022510378,0.000027167429,0.000028831311,0.0002669034,0.00039374075,0.000032384803,0.039461907],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962786,0.000992121,0.00094119506,0.0008629639,0.00029898318,0.00062617],"domain_scores_gemma":[0.9978349,0.00011807658,0.0006699037,0.0011290151,0.00020571715,0.000042361535],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0030006468,0.0002665859,0.00032524933,0.00050884305,0.001944349,0.00016750014,0.00031242703,0.00015077212,0.0021382521],"category_scores_gemma":[0.0004493318,0.00026372093,0.00015477,0.00042776493,0.00041284232,0.00028627462,0.00042923962,0.0005016674,0.00022468214],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006085445,0.000104421095,0.0034466933,0.000023830731,0.00010902823,0.00083214266,0.0012233085,0.00021469603,0.9902414,0.00018414941,0.0025475118,0.00046425397],"study_design_scores_gemma":[0.00052439986,0.0001712988,0.0027728474,0.000055140747,0.000039872775,0.0016882187,0.0011589067,0.000013326465,0.9129961,0.00045959788,0.0798084,0.00031188925],"about_ca_topic_score_codex":0.00007418214,"about_ca_topic_score_gemma":0.000028600916,"teacher_disagreement_score":0.07726089,"about_ca_system_score_codex":0.00018483316,"about_ca_system_score_gemma":0.00057705044,"threshold_uncertainty_score":0.9999815},"labels":[],"label_agreement":null},{"id":"W4223438764","doi":"10.1016/j.jhep.2022.03.030","title":"Untangling the web: The complex parenchymal-immune interface in endotoxemia","year":2022,"lang":"en","type":"letter","venue":"Journal of Hepatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Canada Research Chairs; University Health Network; Western University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Sepsis; Immune system; Hepatology; Pathophysiology; Medicine; Systemic inflammation; Lipopolysaccharide; Small hairpin RNA; Immunology; Systemic inflammatory response syndrome; Inflammation; Bioinformatics; Biology; Internal medicine; Gene; RNA; Genetics","score_opus":0.022798861994799333,"score_gpt":0.2589586476293413,"score_spread":0.23615978563454196,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4223438764","genre_codex":"commentary","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.21870396,0.028252576,0.00003094545,0.746076,0.0053650546,0.0004412288,0.000015269276,0.000020394928,0.0010945996],"genre_scores_gemma":[0.83183104,0.0018053942,0.000025921478,0.16226546,0.00084834127,0.000058587033,0.00019045969,0.000067680434,0.0029071108],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99485606,0.002965085,0.0013582109,0.00019533424,0.00011281829,0.0005124672],"domain_scores_gemma":[0.9963309,0.0016034954,0.0014205497,0.0005096444,0.00012788415,0.00000749659],"candidate_categories":["research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0016296734,0.00030318575,0.00083281635,0.00037574224,0.00033908052,0.000027135025,0.0013491239,0.0007176455,0.0033136061],"category_scores_gemma":[0.00029600287,0.00017071645,0.0003577492,0.00023458616,0.0003895317,0.00008888072,0.0003077125,0.0061881035,0.00014198599],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006519639,0.000037818605,0.0012804643,0.00003106265,0.0004895125,0.00059385446,0.0011010123,0.000048803402,0.047074623,0.000057170997,0.9474302,0.0012035001],"study_design_scores_gemma":[0.00097351824,0.00031537891,0.0004631632,0.000055543314,0.000107788524,0.006620659,0.0004889666,0.000019539562,0.0071875895,0.0001279058,0.98346627,0.00017370183],"about_ca_topic_score_codex":0.000115510134,"about_ca_topic_score_gemma":0.00004668934,"teacher_disagreement_score":0.6131271,"about_ca_system_score_codex":0.00023224672,"about_ca_system_score_gemma":0.00041548721,"threshold_uncertainty_score":0.9975975},"labels":[],"label_agreement":null},{"id":"W4224278198","doi":"10.1101/2022.04.06.487252","title":"Prostaglandins and calprotectin are genetically and functionally linked to the Inflammatory Bowel Diseases","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; McGill University Health Centre; Montreal Heart Institute","funders":"Broad Institute; Institut de Cardiologie de Montréal; Université de Montréal; Department of Epidemiology, Biostatistics and Occupational Health, McGill University; McGill University Health Centre; McGill University","keywords":"Biology; Genome-wide association study; Transcriptome; Inflammatory bowel disease; S100A9; Gene; Genetics; Gene expression; Computational biology; Single-nucleotide polymorphism; Medicine; Disease; Genotype","score_opus":0.008187806371365224,"score_gpt":0.19900290298421766,"score_spread":0.19081509661285243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4224278198","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9866986,0.008310127,0.00022221023,0.0017859533,0.0010129102,0.0014778936,0.00028989866,0.000197689,0.0000047109997],"genre_scores_gemma":[0.99769926,0.00048543347,0.000134018,0.00047071543,0.00018197978,0.00087879493,0.0000031205107,0.00006620212,0.000080457765],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978039,0.00047053827,0.00044939236,0.00073532003,0.0001199222,0.00042088458],"domain_scores_gemma":[0.9984737,0.00015760087,0.00029827087,0.0007697615,0.0002066123,0.000094028735],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00058970065,0.00041365146,0.00038297632,0.00022419619,0.00066952605,0.00014561687,0.0003371354,0.0004300845,0.00021074717],"category_scores_gemma":[0.00043161956,0.0003498031,0.000086278975,0.00017452153,0.00022343724,0.000077880504,0.0010619874,0.00096123473,0.00008191697],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007864847,0.00010967176,0.04127204,0.00036695143,0.00045857218,0.000037751142,0.000092205955,0.00009138737,0.9542457,0.0006536243,0.0018563075,0.000029344219],"study_design_scores_gemma":[0.0006488518,0.0001369585,0.89030606,0.00013408923,0.00014084025,2.1316488e-7,0.00002437073,0.000023760738,0.01978247,0.0000038165244,0.088308014,0.0004905778],"about_ca_topic_score_codex":0.000028561446,"about_ca_topic_score_gemma":0.000006331689,"teacher_disagreement_score":0.9344632,"about_ca_system_score_codex":0.00012207388,"about_ca_system_score_gemma":0.0003888392,"threshold_uncertainty_score":0.9998954},"labels":[],"label_agreement":null},{"id":"W4226051864","doi":"10.12938/bmfh.2021-057","title":"&lt;i&gt;Lactococcus lactis&lt;/i&gt; subsp. &lt;i&gt;cremoris&lt;/i&gt; C60 induces macrophages activation that enhances CD4+ T cell-based adaptive immunity","year":2022,"lang":"en","type":"article","venue":"Bioscience of Microbiota Food and Health","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Japan Society for the Promotion of Science; Mishima Kaiun Memorial Foundation; National Agriculture and Food Research Organization; National Institute of Advanced Industrial Science and Technology","keywords":"CD80; CD86; Antigen presentation; T cell; Antigen; Cell biology; Immune system; Lactococcus lactis; Biology; Antigen-presenting cell; Antigen processing; Chemistry; CD40; Molecular biology; Immunology; Cytotoxic T cell; Biochemistry","score_opus":0.026229610709857864,"score_gpt":0.25679443675458263,"score_spread":0.23056482604472478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226051864","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9792766,0.015175791,0.00021689034,0.001828158,0.0011571571,0.0013296994,0.0002823286,0.0001249563,0.0006084243],"genre_scores_gemma":[0.9960605,0.0017291823,0.0002832499,0.0005070932,0.000059348964,0.000096387674,0.0003032718,0.00004399627,0.00091697223],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.995218,0.0013579594,0.0009884816,0.00097049493,0.00029166735,0.0011733894],"domain_scores_gemma":[0.9971469,0.00039429835,0.0013459625,0.0007506565,0.00022815158,0.00013405606],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0023254792,0.0005996371,0.00088362204,0.000677891,0.0025004018,0.000095134026,0.00094958965,0.0004056764,0.0004168342],"category_scores_gemma":[0.00009575945,0.00057365367,0.0002342717,0.000980412,0.0010474738,0.0006366907,0.00043648577,0.00073640654,0.00005393069],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00082637486,0.0005039328,0.00008643784,0.0001548918,0.00007609213,0.0000028746306,0.0018804419,0.000019067886,0.98908067,0.0007214899,0.002854062,0.0037936482],"study_design_scores_gemma":[0.002058804,0.0031797574,0.027293772,0.00015937828,0.000043116175,0.00004723031,0.00082191266,0.000024155735,0.9259818,0.0000482104,0.03975514,0.00058669667],"about_ca_topic_score_codex":0.00016269655,"about_ca_topic_score_gemma":0.00022055012,"teacher_disagreement_score":0.063098855,"about_ca_system_score_codex":0.00043552773,"about_ca_system_score_gemma":0.0014707325,"threshold_uncertainty_score":0.9996715},"labels":[],"label_agreement":null},{"id":"W4226057301","doi":"10.3389/fcell.2022.898569","title":"Editorial: Toll-Like Receptors Throughout Life: From Controlling Physiological Processes to Determinants of Disease","year":2022,"lang":"en","type":"editorial","venue":"Frontiers in Cell and Developmental Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Toll; Receptor; Biology; Disease; Neuroscience; Cell biology; Immunology; Medicine; Genetics; Internal medicine","score_opus":0.0073926837328848255,"score_gpt":0.23904285351130639,"score_spread":0.23165016977842157,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226057301","genre_codex":"editorial","genre_gemma":"editorial","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":"editorial","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.08288513,0.009598487,0.00005069311,0.000022736924,0.90638417,0.00049822935,0.00045424534,0.00003580568,0.00007050928],"genre_scores_gemma":[0.07581498,0.015541383,0.0033946496,0.0003736601,0.8791751,0.000982325,0.02069347,0.00016008146,0.0038643263],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9973073,0.00048556813,0.00085094664,0.0007551235,0.00010881739,0.00049226463],"domain_scores_gemma":[0.9985011,0.0007402459,0.00037718046,0.00019502557,0.000112220376,0.000074230076],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00037201922,0.00044018732,0.001137708,0.00027246916,0.00020102553,0.000015161077,0.0004424647,0.0011593682,0.00029873103],"category_scores_gemma":[0.0012747352,0.00038315152,0.00009489705,0.00020943106,0.00027438405,0.000087552515,0.00044087437,0.00071818626,0.00004601764],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043568667,0.00011902178,0.0043925447,0.00012936289,0.000118779724,0.0000040694863,0.00060554664,0.0000024423714,0.013665347,6.891812e-7,0.97526,0.0013453399],"study_design_scores_gemma":[0.0020450058,0.00038564584,0.00030781535,0.00008768767,0.000056964567,4.4589584e-7,0.0008367047,0.0000011265355,0.008063088,0.00016380825,0.9875811,0.0004706515],"about_ca_topic_score_codex":0.00019890624,"about_ca_topic_score_gemma":0.000017756674,"teacher_disagreement_score":0.027209034,"about_ca_system_score_codex":0.00016617126,"about_ca_system_score_gemma":0.0010649222,"threshold_uncertainty_score":0.999862},"labels":[],"label_agreement":null},{"id":"W4226316631","doi":"10.3389/fimmu.2021.764390","title":"Single Nucleotide Polymorphisms in the Bovine TLR2 Extracellular Domain Contribute to Breed and Species-Specific Innate Immune Functionality","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Genome British Columbia","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Innate immune system; Single-nucleotide polymorphism; Biology; TLR2; Breed; Immune system; Genetics; Immunology; Genotype; Gene","score_opus":0.010515980428159571,"score_gpt":0.1997817907168624,"score_spread":0.18926581028870282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4226316631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.900049,0.085887425,0.0032674747,0.006327002,0.003154967,0.00043973606,0.000026472826,0.00003903876,0.00080889405],"genre_scores_gemma":[0.99229175,0.0013847159,0.0008303922,0.00050219195,0.00007075932,0.000070106755,0.00038743735,0.000029099334,0.0044335346],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99660826,0.001395092,0.0007693544,0.000493932,0.00007397923,0.00065939775],"domain_scores_gemma":[0.9988353,0.00025249805,0.00016463,0.00062687654,0.00010140755,0.000019262716],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012566798,0.00028123122,0.0005907952,0.00040251622,0.00022314161,0.00004828941,0.0003776832,0.00039209955,0.00038006649],"category_scores_gemma":[0.00021537833,0.00025131143,0.00010642088,0.0006715264,0.0004473831,0.00017648556,0.00020398603,0.0006714843,0.0001545689],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018725506,0.00026462268,0.006526143,0.000007238659,0.00016774988,0.0001595385,0.0015708706,0.000005074294,0.9716944,0.004365252,0.0064983484,0.0068681897],"study_design_scores_gemma":[0.0037224137,0.00034646783,0.25388208,0.00005751106,0.000019873258,0.00032509415,0.003204046,0.0000036741649,0.116110705,0.0018963651,0.62007767,0.0003540943],"about_ca_topic_score_codex":0.0001085771,"about_ca_topic_score_gemma":0.0000680111,"teacher_disagreement_score":0.8555837,"about_ca_system_score_codex":0.00021752364,"about_ca_system_score_gemma":0.00009427212,"threshold_uncertainty_score":0.9999939},"labels":[],"label_agreement":null},{"id":"W4229864619","doi":"10.1159/000062726","title":"Subject Index","year":2001,"lang":"en","type":"book-chapter","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ottawa Hospital","funders":"","keywords":"Index (typography); Subject (documents); Mathematics; Computer science; Library science; World Wide Web","score_opus":0.01227131867582574,"score_gpt":0.21578725401205107,"score_spread":0.20351593533622533,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4229864619","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00024052146,0.0031247032,0.00013376954,0.00012515852,0.00057289127,0.00015499335,0.000003960623,0.00012047165,0.9955235],"genre_scores_gemma":[0.011249836,0.00075272744,0.000004038721,0.000157963,0.00005837979,0.0000044231306,0.00028175485,0.000032594136,0.9874583],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"not_applicable","domain_scores_codex":[0.99927264,0.000026596845,0.00027211956,0.00020642774,0.00002420074,0.00019799409],"domain_scores_gemma":[0.9994374,0.00006143792,0.00011910598,0.00032259664,0.000051559804,0.000007931279],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000118791366,0.00022675074,0.00027768186,0.0001762058,0.000081161175,0.000009599763,0.00015003972,0.00085734186,0.03480917],"category_scores_gemma":[0.000013981658,0.00019442412,0.00014511276,0.000013088728,0.00009220547,0.000049274455,0.00005463993,0.00040630667,0.019507054],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00078888284,0.00003250513,0.00007198762,0.000037116424,0.0009881266,0.00006939472,0.00013937124,0.0000013361164,0.039432142,0.6372888,0.2057504,0.11539995],"study_design_scores_gemma":[0.00035629663,0.00006214538,0.000083886094,0.000039396444,0.000032647724,0.0001127849,0.0000059175136,3.0331304e-7,0.007519097,0.0033147265,0.98823786,0.0002349283],"about_ca_topic_score_codex":0.000030861687,"about_ca_topic_score_gemma":0.000016790102,"teacher_disagreement_score":0.78248745,"about_ca_system_score_codex":0.000038704027,"about_ca_system_score_gemma":0.000069024456,"threshold_uncertainty_score":0.98125637},"labels":[],"label_agreement":null},{"id":"W4231907125","doi":"10.3410/f.725390405.793526436","title":"Faculty Opinions recommendation of Catchup: a mouse model for imaging-based tracking and modulation of neutrophil granulocytes.","year":2016,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Tracking (education); Modulation (music); Computer science; Psychology; Physics; Acoustics; Pedagogy","score_opus":0.02740424117644516,"score_gpt":0.32390696406618075,"score_spread":0.29650272288973556,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4231907125","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000012658541,0.0018882684,0.0015187797,0.07194489,0.00039826025,0.0014407653,0.9227679,0.000024407036,0.000004104434],"genre_scores_gemma":[0.00055666204,0.00027146604,0.0003341998,0.0008353315,0.00005725961,0.00022970996,0.99712175,0.000024246438,0.0005693778],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9969959,0.00042372523,0.0015528954,0.00047045574,0.00027198973,0.00028501434],"domain_scores_gemma":[0.9924981,0.0002573421,0.0018813355,0.00089274975,0.004413048,0.000057445686],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012062739,0.00039831156,0.0008519757,0.00041919574,0.00021063161,0.00003669268,0.0006846524,0.0006406929,0.000074524134],"category_scores_gemma":[0.0032565836,0.00025624223,0.00047492608,0.0005179428,0.00043591496,0.00034934218,0.00016262918,0.0004595757,0.000006732593],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001233571,0.00020128665,0.000004470847,0.004799248,0.00012423476,2.2236357e-8,0.000116282514,0.0000028727404,0.0013042561,0.00018250683,0.9882214,0.0049200314],"study_design_scores_gemma":[0.0017445964,0.00010906043,0.00048669433,0.0054249335,0.00019990963,0.000010604402,0.000012315845,0.00046704116,0.00233706,0.000049317205,0.98890495,0.00025352312],"about_ca_topic_score_codex":0.000039928094,"about_ca_topic_score_gemma":0.0000034734753,"teacher_disagreement_score":0.07435389,"about_ca_system_score_codex":0.0000747818,"about_ca_system_score_gemma":0.00043103695,"threshold_uncertainty_score":0.999989},"labels":[],"label_agreement":null},{"id":"W4233150598","doi":"10.3410/f.726258924.793526437","title":"Faculty Opinions recommendation of Neutrophil-specific deletion of the CARD9 gene expression regulator suppresses autoantibody-induced inflammation in vivo.","year":2016,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"In vivo; Inflammation; Regulator; Autoantibody; Gene expression; Gene; Expression (computer science); Immunology; Medicine; Cell biology; Biology; Cancer research; Genetics; Antibody; Computer science","score_opus":0.021032095034623596,"score_gpt":0.3047856847802168,"score_spread":0.28375358974559317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4233150598","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00034762142,0.001742792,0.000025722398,0.05691042,0.0017421584,0.001649054,0.93753266,0.000026617616,0.000022958426],"genre_scores_gemma":[0.00089866825,0.0009194717,0.0000780722,0.00023969177,0.00017020662,0.00017843959,0.9969469,0.000025508056,0.0005431003],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99467015,0.0015909519,0.0022654056,0.00056627596,0.0005490761,0.00035811667],"domain_scores_gemma":[0.991783,0.00024081548,0.0027186829,0.0017288516,0.003473506,0.00005513784],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0015108221,0.0004906929,0.00097832,0.0005126901,0.00024860876,0.00004245572,0.0014718022,0.001194509,0.0005248068],"category_scores_gemma":[0.003231383,0.00027298293,0.0006045445,0.0013550408,0.0003965599,0.00046407408,0.0004182028,0.0008688064,0.00003417972],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010487382,0.00016708882,0.00000919413,0.0021551538,0.00009514449,9.6649984e-8,0.00014162334,3.5940752e-7,0.076843284,0.00016817209,0.9187866,0.0015284237],"study_design_scores_gemma":[0.0009504124,0.00009816832,0.0031857542,0.010862521,0.00008154518,0.000023322978,0.000021498685,9.766189e-7,0.14707565,0.000019074643,0.8374524,0.00022863396],"about_ca_topic_score_codex":0.000052300224,"about_ca_topic_score_gemma":0.0000054844013,"teacher_disagreement_score":0.081334144,"about_ca_system_score_codex":0.00015408159,"about_ca_system_score_gemma":0.00046062953,"threshold_uncertainty_score":0.9999722},"labels":[],"label_agreement":null},{"id":"W4234317413","doi":"10.1146/annurev.biochem.71.110601.135414","title":"Lipopolysaccharide Endotoxins","year":2002,"lang":"en","type":"review","venue":"Annual Review of Biochemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4315,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of General Medical Sciences","keywords":"Lipid A; Biology; TLR4; Lipopolysaccharide; Innate immune system; Bacterial outer membrane; Receptor; Cell biology; Signal transduction; Biochemistry; Periplasmic space; Lipid signaling; Gene; Immunology","score_opus":0.017473091890582916,"score_gpt":0.3006004416362896,"score_spread":0.28312734974570664,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4234317413","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000033233578,0.9953557,0.0000016062278,0.000031969514,0.0002776296,0.0005256763,0.0002512207,0.00004334118,0.0035095008],"genre_scores_gemma":[0.0000061222595,0.9894018,0.000013325661,0.000099254634,0.00007393222,0.000101718135,0.0010339752,0.00003818998,0.00923165],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976343,0.0002538477,0.0013111411,0.0003953093,0.00007059082,0.00033482024],"domain_scores_gemma":[0.99780756,0.00019730325,0.0010011704,0.00081951154,0.00014781799,0.000026609045],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00039860632,0.00047619673,0.002302373,0.00009225236,0.000059433594,0.0000054390493,0.00058604655,0.00071831996,0.0023329759],"category_scores_gemma":[0.0005393581,0.00037622513,0.001051152,0.0001958983,0.00016868513,0.00006538222,0.00015014668,0.00055009994,0.0018881463],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000003036998,0.000046175068,3.020985e-8,0.20595045,0.00026459113,0.00000521965,0.000010883014,7.11091e-10,0.0016680356,0.000033363976,0.01974023,0.772278],"study_design_scores_gemma":[0.000086394495,0.000029688232,2.2182496e-8,0.16545126,0.000721722,0.00026814986,0.000008165062,6.2951835e-9,0.028714957,0.000001253429,0.80445355,0.00026483517],"about_ca_topic_score_codex":0.000006067703,"about_ca_topic_score_gemma":5.6646446e-8,"teacher_disagreement_score":0.7847133,"about_ca_system_score_codex":0.00006156568,"about_ca_system_score_gemma":0.00024781292,"threshold_uncertainty_score":0.999869},"labels":[],"label_agreement":null},{"id":"W4236846682","doi":"10.1111/j.1525-1373.2000.22304.x","title":"How the Blood Talks to the Brain Parenchyma and the Paraventricular Nucleus of the Hypothalamus During Systemic Inflammatory and Infectious Stimuli","year":2000,"lang":"en","type":"article","venue":"Proceedings of The Society for Experimental Biology and Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":58,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"","keywords":"Proinflammatory cytokine; Signal transduction; STAT protein; Inflammation; Cell biology; Biology; Neuroscience; Transcription factor; Receptor; Blood–brain barrier; Janus kinase; Central nervous system; Immunology; STAT3","score_opus":0.006120265275267438,"score_gpt":0.22451161214984758,"score_spread":0.21839134687458014,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4236846682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9666316,0.021559384,0.0000010820415,0.0104005,0.00017897229,0.0011228716,0.000008031764,0.000011525301,0.000086043896],"genre_scores_gemma":[0.99783945,0.00084693986,0.000004459568,0.00047083737,0.00006742455,0.00012131615,0.0000026044568,0.000008241087,0.0006387268],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992183,0.000078742625,0.00026911616,0.000182815,0.0000455276,0.0002055111],"domain_scores_gemma":[0.9992515,0.00030486836,0.00022616536,0.00014533596,0.00005701941,0.000015100238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00071797596,0.00016205829,0.0002794202,0.00001598994,0.00073721196,0.000012596508,0.00027220006,0.00016449494,0.000010327691],"category_scores_gemma":[0.00019526746,0.000058692942,0.00017869534,0.00010777948,0.0019638315,0.000052788564,0.00017803322,0.00020396349,4.519888e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042840088,0.000025641642,0.002442427,0.00008790551,0.00045317019,5.94298e-8,0.014911961,8.625139e-7,0.97733325,0.0028255186,0.0007388493,0.0007519691],"study_design_scores_gemma":[0.008645989,0.0006770962,0.011637587,0.0003245962,0.00047006385,0.0006974834,0.02634948,0.000020959715,0.93871427,0.00055879983,0.011718671,0.00018503275],"about_ca_topic_score_codex":0.000037517395,"about_ca_topic_score_gemma":0.0000012304649,"teacher_disagreement_score":0.038618993,"about_ca_system_score_codex":0.000014345979,"about_ca_system_score_gemma":0.000014025333,"threshold_uncertainty_score":0.7235819},"labels":[],"label_agreement":null},{"id":"W4238104725","doi":"10.3410/f.1025886.320842","title":"Faculty Opinions recommendation of Toll-like receptor 3 promotes cross-priming to virus-infected cells.","year":2005,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Toll; Priming (agriculture); Toll-like receptor; Virology; Receptor; Virus; Biology; Immunology; Innate immune system; Genetics; Botany","score_opus":0.022496333812212912,"score_gpt":0.3391169603231265,"score_spread":0.3166206265109136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238104725","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020825424,0.0016572748,0.000029974388,0.081637666,0.0023990013,0.0019122509,0.9122303,0.00006941996,0.0000432845],"genre_scores_gemma":[0.0000137937695,0.00044827364,0.000470692,0.003010189,0.00023638559,0.0002874238,0.99167365,0.0000355754,0.0038239895],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99511164,0.000963827,0.0021696337,0.0007498078,0.0004832425,0.00052181585],"domain_scores_gemma":[0.9912604,0.00024483824,0.001772882,0.001543809,0.0050399844,0.00013805441],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0017127218,0.00064100936,0.0011269922,0.00058406085,0.00041816122,0.00013429142,0.001623549,0.0013557699,0.002320956],"category_scores_gemma":[0.006139321,0.00044407457,0.00067176134,0.0017193338,0.00039639985,0.0004605257,0.000616223,0.0012970404,0.0008415068],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008484774,0.0004040594,0.0000021564492,0.0028272194,0.00024832526,1.1573044e-7,0.00023036895,2.4099273e-7,0.00207644,0.00005095658,0.9892729,0.0048024007],"study_design_scores_gemma":[0.000845847,0.0002340119,0.0006311024,0.006949736,0.00016327077,0.00003292143,0.000020099102,0.000001208487,0.008191513,0.0000031325947,0.98249596,0.00043119566],"about_ca_topic_score_codex":0.00008453189,"about_ca_topic_score_gemma":0.000010273616,"teacher_disagreement_score":0.07944337,"about_ca_system_score_codex":0.0001832425,"about_ca_system_score_gemma":0.0005903974,"threshold_uncertainty_score":0.9999407},"labels":[],"label_agreement":null},{"id":"W4238855426","doi":"10.1128/iai.00519-09","title":"Role of Nod1 in Mucosal Dendritic Cells during <i>Salmonella</i> Pathogenicity Island 1-Independent <i>Salmonella enterica</i> Serovar Typhimurium Infection","year":2009,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":40,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Bundesministerium für Bildung und Forschung","keywords":"NOD1; Biology; Microbiology; Lamina propria; Salmonella; Salmonella enterica; NOD2; Intracellular parasite; Pathogen; Innate immune system; Immune system; CD11c; Immunology; Virology; Bacteria; Phenotype; Epithelium","score_opus":0.004745938384297343,"score_gpt":0.2068838698105929,"score_spread":0.20213793142629555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4238855426","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9967336,0.0009419095,0.00009082627,0.000036757683,0.00042496985,0.00028118986,0.000009588922,0.000077334334,0.001403819],"genre_scores_gemma":[0.99834037,0.0012777162,0.00001011492,0.00005374896,0.000028735109,0.000008233267,0.00005286072,0.00001432245,0.00021388708],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99824023,0.00053414574,0.0005632276,0.0002598492,0.000064052925,0.0003385073],"domain_scores_gemma":[0.99926907,0.00007506514,0.00022690874,0.00029820332,0.000101272366,0.000029467472],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00045380945,0.00024147794,0.00036452516,0.00031465205,0.00024434674,0.000027287004,0.000092390386,0.00032810264,0.000117384654],"category_scores_gemma":[0.00005378207,0.00024832573,0.00012214687,0.00029148054,0.00010165829,0.0002965115,0.000076440316,0.0005460916,0.0000845542],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004791218,0.00036748013,0.029420592,0.00004380857,0.000041786978,0.0000030822666,0.00055675337,0.00005009402,0.9653914,0.00003528648,0.00002719957,0.003583422],"study_design_scores_gemma":[0.0013018851,0.00025083058,0.4090326,0.00004249907,0.000026433449,0.00011868128,0.00007661874,0.0000296648,0.5881299,0.0001110964,0.0007124913,0.00016726438],"about_ca_topic_score_codex":0.0017604422,"about_ca_topic_score_gemma":0.0003103915,"teacher_disagreement_score":0.37961203,"about_ca_system_score_codex":0.000082066974,"about_ca_system_score_gemma":0.00003481361,"threshold_uncertainty_score":0.9999969},"labels":[],"label_agreement":null},{"id":"W4239479327","doi":"10.1016/j.cyto.2009.07.165","title":"The role of CCL5/RANTES in regulating nutrient receptor traffiking, metabolism and protein expression in activated T cells","year":2009,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Toronto General Hospital; University of Toronto","funders":"","keywords":"Eotaxin; Chemokine; CCL5; CXCL1; Lipopolysaccharide; CCL3; CCL2; Inflammation; CXCL2; Immunology; Tumor necrosis factor alpha; Immune system; Chemistry; Biology; Chemokine receptor; T cell; IL-2 receptor","score_opus":0.0041059877977182285,"score_gpt":0.2026839901599279,"score_spread":0.19857800236220968,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4239479327","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942769,0.0049650576,0.000008421661,0.0001987621,0.000051717707,0.0003197888,0.0000018746739,0.00001515175,0.00016232347],"genre_scores_gemma":[0.99953645,0.00014704494,0.00009646275,0.000009973584,0.0000112302605,0.000016553482,0.000012931399,0.0000053600006,0.00016399634],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99912614,0.0002235301,0.00031288256,0.00012935145,0.000026750622,0.00018134729],"domain_scores_gemma":[0.99960786,0.00009122942,0.00013163713,0.00013739073,0.000026020492,0.000005863364],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032909747,0.0000933685,0.00018356656,0.000105940446,0.00007225927,0.000007658905,0.00008790414,0.00012239725,0.000018625395],"category_scores_gemma":[0.000083046354,0.00006536298,0.000025242103,0.00015722624,0.00006030026,0.00008981003,0.00002525938,0.00016766008,0.00000499735],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006466635,0.00005950885,0.00008089863,0.000004706676,0.00000547346,3.172583e-7,0.00086527923,0.000008656635,0.9692153,0.000630593,0.00002564601,0.028456965],"study_design_scores_gemma":[0.0011960233,0.00007106778,0.008393105,0.00018195792,0.000002818382,0.0000021469439,0.00039900426,0.000017529732,0.97439826,0.0004942552,0.014774287,0.00006955159],"about_ca_topic_score_codex":0.000020979012,"about_ca_topic_score_gemma":0.000004490046,"teacher_disagreement_score":0.028387414,"about_ca_system_score_codex":0.0000150552705,"about_ca_system_score_gemma":0.00001628112,"threshold_uncertainty_score":0.26654252},"labels":[],"label_agreement":null},{"id":"W4240221718","doi":"10.3410/f.718478374.793498937","title":"Faculty Opinions recommendation of Structural basis for outer membrane lipopolysaccharide insertion.","year":2014,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lipopolysaccharide; Basis (linear algebra); Bacterial outer membrane; Chemistry; Computer science; Computational biology; Biology; Medicine; Mathematics; Biochemistry; Internal medicine; Gene; Geometry","score_opus":0.0243531586336329,"score_gpt":0.32912653746988924,"score_spread":0.3047733788362563,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4240221718","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000060202515,0.0012485812,0.000100407684,0.11435141,0.0021685737,0.0015482592,0.88052183,0.000038480084,0.000016432985],"genre_scores_gemma":[0.000053039115,0.00021281974,0.00031942138,0.0031018343,0.00023144193,0.00036863502,0.9938225,0.000028221972,0.0018620752],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99594426,0.00077550637,0.0019154885,0.0005887604,0.00037069875,0.00040529075],"domain_scores_gemma":[0.9915439,0.0003659546,0.0019461577,0.0013215003,0.004740661,0.0000818424],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001558212,0.00053208694,0.001090021,0.00043603143,0.00036747204,0.00007472236,0.0013726208,0.001162478,0.0009819742],"category_scores_gemma":[0.008625744,0.00034495987,0.00083545607,0.00072478235,0.0003640355,0.00037508883,0.0003222476,0.0008869789,0.0001222827],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000098593795,0.00011474544,0.0000018029639,0.005040513,0.0003193874,4.6067626e-8,0.000109972025,1.1989768e-7,0.00034909797,0.00039140988,0.99066,0.0029143053],"study_design_scores_gemma":[0.0010717843,0.00018948555,0.0005488095,0.005428158,0.0003021696,0.00004788191,0.000026006222,0.0000055314595,0.0026536114,0.000026088099,0.9893582,0.00034229003],"about_ca_topic_score_codex":0.00008553003,"about_ca_topic_score_gemma":0.000006758027,"teacher_disagreement_score":0.11330067,"about_ca_system_score_codex":0.00010390482,"about_ca_system_score_gemma":0.00039887746,"threshold_uncertainty_score":0.9999313},"labels":[],"label_agreement":null},{"id":"W4241566970","doi":"10.1159/000230308","title":"Cellular Immunity","year":2009,"lang":"en","type":"article","venue":"International Archives of Allergy and Applied Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"U.S. Public Health Service; Indigenous and Northern Affairs Canada; Commonwealth Foundation","keywords":"Immunology; Cellular immunity; Immunity; Medicine; Biology; Immune system","score_opus":0.005261579579752309,"score_gpt":0.20509038782895941,"score_spread":0.1998288082492071,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4241566970","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9207418,0.0022569066,0.0012790675,0.0010635243,0.00039002622,0.00011048567,0.000005224632,0.000047561214,0.0741054],"genre_scores_gemma":[0.9975908,0.00080203573,0.00021267806,0.000117858,0.000021843663,0.000006925453,0.00014166196,0.0000057848893,0.0011004129],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99923635,0.000072818606,0.00030912395,0.00017045377,0.000028825665,0.00018243145],"domain_scores_gemma":[0.99950194,0.00013889783,0.00014103959,0.00018318962,0.00002562782,0.000009271872],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000079568075,0.00013139512,0.00020229413,0.00018536666,0.000104030594,0.0000069603266,0.00030180017,0.00011960455,0.0003136582],"category_scores_gemma":[0.000024855204,0.00012318094,0.00006410976,0.00004332468,0.00031524044,0.000057687415,0.000095179705,0.00022100325,0.00005916569],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008177749,0.00009313401,0.000012411364,0.0000012812122,0.00038310245,9.544209e-7,0.0004558201,0.000008622981,0.8204512,0.091133185,0.00005067269,0.08659187],"study_design_scores_gemma":[0.001435863,0.00023314584,0.04389599,0.000020293226,0.000008911282,0.000036343572,0.00024056737,0.000017463153,0.8854059,0.0138684455,0.054675788,0.00016129772],"about_ca_topic_score_codex":0.000025038966,"about_ca_topic_score_gemma":0.0000020434068,"teacher_disagreement_score":0.08643057,"about_ca_system_score_codex":0.0000065212944,"about_ca_system_score_gemma":0.00002160084,"threshold_uncertainty_score":0.5023173},"labels":[],"label_agreement":null},{"id":"W4243916844","doi":"10.3410/f.1027246.329548","title":"Faculty Opinions recommendation of Response to Staphylococcus aureus requires CD36-mediated phagocytosis triggered by the COOH-terminal cytoplasmic domain.","year":2005,"lang":"en","type":"dataset","venue":"Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Staphylococcus aureus; Phagocytosis; CD36; Cytoplasm; Terminal (telecommunication); Chemistry; Microbiology; Domain (mathematical analysis); Cell biology; Computer science; Biology; Bacteria; Biochemistry; Computer network; Receptor; Genetics","score_opus":0.018348024192084398,"score_gpt":0.32226629567619547,"score_spread":0.30391827148411105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4243916844","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001152984,0.0037727456,0.000019782405,0.22733036,0.0009994422,0.0020092165,0.7656882,0.000048232327,0.000016768283],"genre_scores_gemma":[0.00010058343,0.00058524107,0.00012383911,0.005197512,0.00017774459,0.0005281337,0.9902439,0.000037533,0.0030055265],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9926616,0.0027406262,0.002498392,0.00079231575,0.00067657226,0.00063051056],"domain_scores_gemma":[0.9910062,0.00096132595,0.0022147454,0.0019792207,0.0036770932,0.00016143774],"candidate_categories":["metaresearch","metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0037560824,0.00074657757,0.0013004731,0.000604517,0.00058792136,0.00012574677,0.0021287159,0.001326465,0.0010601394],"category_scores_gemma":[0.01119464,0.00044490088,0.0007580235,0.0021916775,0.00068913895,0.00038711837,0.0005830812,0.0015097787,0.00043286974],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00095273845,0.00039650578,0.0000010978356,0.0011937533,0.00041121076,5.9882274e-7,0.0004394623,1.4386241e-7,0.0025708983,0.000036915455,0.99141765,0.0025790178],"study_design_scores_gemma":[0.0019103562,0.00040821845,0.0005302469,0.004431,0.00028106157,0.00008770436,0.00012828973,0.0000010488849,0.0017871239,0.0000068912223,0.98997825,0.00044983064],"about_ca_topic_score_codex":0.00007665798,"about_ca_topic_score_gemma":0.000010813606,"teacher_disagreement_score":0.22455573,"about_ca_system_score_codex":0.00023441938,"about_ca_system_score_gemma":0.0009116337,"threshold_uncertainty_score":0.99997},"labels":[],"label_agreement":null},{"id":"W4244323346","doi":"10.1515/iupac.84.0694","title":"Immune Response","year":2016,"lang":"en","type":"dataset","venue":"IUPAC Standards Online","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Glossary; Immunotoxicology; Immunology; Medicine; Immune system; Philosophy; Linguistics","score_opus":0.009505123422672299,"score_gpt":0.3547245266033842,"score_spread":0.3452194031807119,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244323346","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002890279,0.008366741,0.000040558705,0.0012604181,0.0022892593,0.00034871887,0.9846536,0.00011671155,0.000033699325],"genre_scores_gemma":[0.00015741684,0.0015872347,0.0000048811894,0.00016061179,0.00021182223,0.000027708242,0.98961955,0.000043968135,0.0081867855],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99680966,0.0010372648,0.00082540576,0.0005026794,0.00019503423,0.00062995875],"domain_scores_gemma":[0.9972931,0.0005016296,0.00045881304,0.0012769232,0.00043435217,0.000035168465],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001936637,0.0005288187,0.0008117432,0.00044579935,0.00025724282,0.000035267512,0.0006304932,0.0011493637,0.014708207],"category_scores_gemma":[0.0017937283,0.00039347186,0.00030985035,0.00017008648,0.00032429502,0.00013499155,0.0002517985,0.0007832425,0.00022479669],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010545484,0.00013690753,5.849757e-7,0.000044278288,0.00031434518,0.000043721102,0.00002198076,1.4955614e-7,0.045810726,0.0000077619125,0.9386946,0.004379466],"study_design_scores_gemma":[0.0022402941,0.00049454294,0.00014543576,0.00039704947,0.00012877327,0.00011027508,0.000028961123,7.2559295e-8,0.012361182,0.000036438847,0.9835578,0.0004991753],"about_ca_topic_score_codex":0.00008803437,"about_ca_topic_score_gemma":0.000037762173,"teacher_disagreement_score":0.044863205,"about_ca_system_score_codex":0.00039563078,"about_ca_system_score_gemma":0.001126556,"threshold_uncertainty_score":0.9998517},"labels":[],"label_agreement":null},{"id":"W4244384861","doi":"10.21203/rs.3.rs-110973/v2","title":"Exposures to 2,4-Dichlorophenoxyacetic acid with or without endotoxin upregulate small cell lung cancer pathway","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Downregulation and upregulation; Lung cancer; 2,4-Dichlorophenoxyacetic acid; Chemistry; Cancer research; Cell; Cell biology; Biology; Medicine; Biochemistry; Internal medicine; Botany","score_opus":0.03621496784879035,"score_gpt":0.3336255892712095,"score_spread":0.29741062142241914,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4244384861","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9696299,0.024499921,0.0004366539,0.0006110669,0.0006120654,0.0029087719,0.00011324323,0.00014427291,0.0010441461],"genre_scores_gemma":[0.97051466,0.0013330376,0.00041034474,0.00007221526,0.00015439125,0.002011136,0.00055927155,0.000116758914,0.024828196],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9944341,0.0021314598,0.0005976522,0.0011375451,0.00034667435,0.0013525208],"domain_scores_gemma":[0.99681026,0.0003424694,0.00020251884,0.0014441392,0.0010684168,0.00013220511],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014155054,0.0005647314,0.00086466596,0.000603163,0.0005155297,0.00025756448,0.00087289046,0.00089877367,0.0028617668],"category_scores_gemma":[0.00029450053,0.00042008984,0.0001937244,0.00055592746,0.00027402127,0.00011316795,0.0015399067,0.0023890177,0.00033122487],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0048189033,0.00023396462,0.004559369,0.0020973901,0.0005326577,0.00021209124,0.007205912,0.0005470862,0.97136354,0.00003543482,0.0023327456,0.0060608904],"study_design_scores_gemma":[0.0017079511,0.0008257426,0.0044838716,0.0027647065,0.00007310662,0.000046297682,0.002214911,0.000054306132,0.97216,0.000015230488,0.01501621,0.000637702],"about_ca_topic_score_codex":0.0012722989,"about_ca_topic_score_gemma":0.0013544123,"teacher_disagreement_score":0.02378405,"about_ca_system_score_codex":0.00043385942,"about_ca_system_score_gemma":0.0027025093,"threshold_uncertainty_score":0.9999125},"labels":[],"label_agreement":null},{"id":"W4245518047","doi":"10.1016/b978-012373944-5.00196-6","title":"Lipopolysaccharides (Endotoxins)","year":2009,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lipopolysaccharide; Innate immune system; Bacterial outer membrane; Biogenesis; Cell biology; Immune system; Microbiology; Lipid A; Septic shock; Bacteria; Inflammation; Biology; Sepsis; Chemistry; Immunology; Biochemistry; Escherichia coli","score_opus":0.01102043577421812,"score_gpt":0.22343570362545842,"score_spread":0.2124152678512403,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4245518047","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00034158968,0.010693769,0.0000015043718,0.000099448196,0.00081060483,0.00045755264,0.00001625501,0.00017531303,0.987404],"genre_scores_gemma":[0.0021176715,0.0004938519,0.000029715704,0.00041582913,0.00017361122,0.000021272112,0.00016562833,0.000066449196,0.996516],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99849516,0.00006760365,0.0005699988,0.00041367856,0.00006551233,0.00038804053],"domain_scores_gemma":[0.99884534,0.000077991994,0.00032554448,0.00063552917,0.00008883131,0.0000267735],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0002412483,0.00047550176,0.000609904,0.00026437716,0.00020158604,0.000030185476,0.00034694318,0.0009211827,0.0022158134],"category_scores_gemma":[0.000028972348,0.00043850444,0.00034566908,0.000009573991,0.00019167626,0.000059450816,0.00008932945,0.0007549182,0.0074645085],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001013007,0.000007481367,4.354973e-7,0.00001950498,0.00021060143,0.000019308605,0.00010573281,8.345065e-8,0.04091454,0.0116135515,0.00090098585,0.9461065],"study_design_scores_gemma":[0.00043760016,0.00013705844,0.000011153323,0.000241693,0.0001262259,0.00010334152,0.000004615952,1.3351463e-7,0.049962528,0.0063981414,0.94214135,0.00043616796],"about_ca_topic_score_codex":6.6102945e-7,"about_ca_topic_score_gemma":0.000004955541,"teacher_disagreement_score":0.9456703,"about_ca_system_score_codex":0.00007613734,"about_ca_system_score_gemma":0.00013844814,"threshold_uncertainty_score":0.9998067},"labels":[],"label_agreement":null},{"id":"W4246638965","doi":"10.1515/iupac.84.0807","title":"Kupffer Cell","year":2016,"lang":"en","type":"dataset","venue":"IUPAC Standards Online","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"","keywords":"Glossary; Immunotoxicology; Immunology; Medicine; Immune system; Philosophy; Linguistics","score_opus":0.00813394921693155,"score_gpt":0.3445009511130453,"score_spread":0.33636700189611374,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4246638965","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0006040707,0.0051241326,0.00005090451,0.000407674,0.0019868168,0.00025715737,0.9912639,0.00007440481,0.00023091142],"genre_scores_gemma":[0.00007971106,0.0017170834,0.000004432415,0.00020653162,0.00026313215,0.000016242835,0.9852745,0.000031612348,0.012406734],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99816674,0.00028632345,0.0005122303,0.00040312414,0.00014039627,0.00049120944],"domain_scores_gemma":[0.99839056,0.00015261902,0.0002958472,0.0008314662,0.00030154033,0.00002797841],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005021647,0.00041199385,0.00057430065,0.00025656895,0.00016511968,0.000024792715,0.00044293815,0.0009597469,0.017373351],"category_scores_gemma":[0.00025641214,0.0002957203,0.0002059659,0.00009818899,0.00018566134,0.0000947166,0.00016638928,0.00061072846,0.00024192459],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005514553,0.00013872012,0.0000014247319,0.00007481497,0.00013689061,0.000019466794,0.000012974057,1.16109554e-7,0.01126028,0.000005828395,0.9846106,0.0031873928],"study_design_scores_gemma":[0.0016056914,0.00024169595,0.000019640049,0.00018449081,0.00011678626,0.0000321769,0.000016118427,6.1997405e-8,0.014927328,0.00003369599,0.982436,0.00038629703],"about_ca_topic_score_codex":0.000078579156,"about_ca_topic_score_gemma":0.00006708402,"teacher_disagreement_score":0.017131427,"about_ca_system_score_codex":0.00021274465,"about_ca_system_score_gemma":0.0005956579,"threshold_uncertainty_score":0.9999495},"labels":[],"label_agreement":null},{"id":"W4247791818","doi":"10.4081/mrm.2015.290","title":"Effect of inhaled hydrosoluble curcumin on inflammatory markers in broncho-alveolar lavage fluid of horses with LPS-induced lung neutrophilia","year":2015,"lang":"en","type":"article","venue":"Multidisciplinary Respiratory Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Neutrophilia; Medicine; Bronchoalveolar lavage; Lung; Curcumin; Pathology; Immunology; Internal medicine; Pharmacology","score_opus":0.018794097930085893,"score_gpt":0.2862704542970629,"score_spread":0.267476356366977,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4247791818","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.994206,0.0031891435,0.00000958059,0.00012575943,0.0004551075,0.0009842527,0.000007166891,0.000052053758,0.00097091944],"genre_scores_gemma":[0.9994488,0.000023047722,0.000009097263,0.000027822101,0.00006985326,0.000074614836,0.000057078974,0.000043059146,0.00024665217],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99645054,0.0014675312,0.0009989374,0.00043104173,0.00021406918,0.00043785066],"domain_scores_gemma":[0.9979547,0.000602342,0.00049992965,0.00070007186,0.00016518246,0.00007773041],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0026359076,0.00040675607,0.0009541934,0.00061533507,0.00009444906,0.0000032861326,0.00033673458,0.00036130968,0.00009029343],"category_scores_gemma":[0.00051336887,0.00028889728,0.0000999716,0.0004473243,0.00059626,0.00023034407,0.00014360365,0.0004958902,0.000049652863],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.014904824,0.00016860354,0.022568917,0.00034545487,0.00014043692,0.00014490404,0.0020151644,0.0001698786,0.9572332,0.000032359523,0.0007978127,0.001478465],"study_design_scores_gemma":[0.015227165,0.014900419,0.032269116,0.0012879893,0.00012116255,0.00004923025,0.0006461284,0.00013788175,0.93395686,0.000006076975,0.0010954059,0.0003025358],"about_ca_topic_score_codex":0.00009731369,"about_ca_topic_score_gemma":0.000021983182,"teacher_disagreement_score":0.023276292,"about_ca_system_score_codex":0.0001490374,"about_ca_system_score_gemma":0.00024789793,"threshold_uncertainty_score":0.9999563},"labels":[],"label_agreement":null},{"id":"W4249465801","doi":"10.21203/rs.3.rs-110973/v1","title":"Exposures to 2,4-Dichlorophenoxyacetic Acid With or Without Endotoxin Upregulate Small Cell Lung Cancer Pathway","year":2020,"lang":"en","type":"preprint","venue":"Research Square","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Downregulation and upregulation; 2,4-Dichlorophenoxyacetic acid; Lung cancer; Chemistry; Cancer; Cancer research; Cell biology; Oncology; Medicine; Biology; Internal medicine; Biochemistry; Botany","score_opus":0.047628038382719284,"score_gpt":0.33916325389605945,"score_spread":0.29153521551334016,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4249465801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750485,0.015015705,0.00066731055,0.0022399619,0.0005901725,0.0044452487,0.0002323183,0.00025199866,0.0015087742],"genre_scores_gemma":[0.9815323,0.0008405075,0.0003619031,0.00012610626,0.0002081129,0.001972046,0.00041088118,0.00012829601,0.014419864],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9948988,0.0017497771,0.0005961599,0.0011414117,0.00033972654,0.0012741021],"domain_scores_gemma":[0.99744296,0.00032133897,0.00021447847,0.001163824,0.0006886998,0.0001686691],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011017903,0.00058002083,0.00086187717,0.00052512117,0.0004764304,0.00017228548,0.0010226346,0.00080845616,0.001819211],"category_scores_gemma":[0.0003148874,0.00042395602,0.00017787589,0.0005367348,0.0002806999,0.000091788344,0.001534825,0.0025572763,0.0008677155],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008805785,0.0001519506,0.003167247,0.0022355053,0.00048265315,0.00014176263,0.00668207,0.00037162693,0.9666624,0.00008419673,0.0061577344,0.0050570355],"study_design_scores_gemma":[0.0019411956,0.0014014875,0.0033837375,0.001854964,0.00007769206,0.000025695837,0.0009884514,0.00009888202,0.95458907,0.00006352787,0.034901444,0.0006738361],"about_ca_topic_score_codex":0.00087841763,"about_ca_topic_score_gemma":0.0005152092,"teacher_disagreement_score":0.028743709,"about_ca_system_score_codex":0.00037235025,"about_ca_system_score_gemma":0.0020410852,"threshold_uncertainty_score":0.99991024},"labels":[],"label_agreement":null},{"id":"W4251775574","doi":"10.1016/s0378-1097(01)00445-1","title":"Selection of peptides that bind to the core oligosaccharide of R-form LPS from a phage-displayed heptapeptide library","year":2001,"lang":"en","type":"article","venue":"FEMS Microbiology Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"University of Calgary","keywords":"Biopanning; Phage display; Oligosaccharide; Mimotope; Peptide library; Molecular biology; Biology; Lipopolysaccharide; Ligand (biochemistry); Phagemid; Lectin; Panning (audio); Biochemistry; Bacteriophage; Chemistry; Escherichia coli; Peptide; Peptide sequence; Receptor; Gene","score_opus":0.014150549834938332,"score_gpt":0.21602826923143068,"score_spread":0.20187771939649235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4251775574","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947755,0.0006338625,0.00023179782,0.0029377537,0.00061887846,0.0004223911,0.00014144124,0.000061947416,0.0001764418],"genre_scores_gemma":[0.99537194,0.00016629006,0.00021973527,0.0023593046,0.00007132771,0.00002946828,0.00074407033,0.000027220556,0.0010106332],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984104,0.0002734027,0.0005400221,0.00032810704,0.000027051385,0.00042102058],"domain_scores_gemma":[0.9987996,0.00038086108,0.0003713756,0.00038449364,0.000043254633,0.000020396124],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00023993826,0.000255564,0.00044253378,0.00024290805,0.00016487655,0.0000109535,0.00046299477,0.00030379777,0.0009550117],"category_scores_gemma":[0.000061603125,0.0001892386,0.00018496666,0.00030807435,0.0003254875,0.000212617,0.00014372675,0.00031095848,0.00045018573],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00097273826,0.000050016275,0.01452018,0.000010675291,0.00030639625,0.0000041804055,0.0010479884,0.000023990766,0.9474997,0.000040714982,0.033932813,0.0015905971],"study_design_scores_gemma":[0.0008310006,0.00018915816,0.031715285,0.00007152692,0.000061292616,0.00013837025,0.00023127031,0.000003700658,0.9128262,0.000024546474,0.05371621,0.00019145002],"about_ca_topic_score_codex":0.000404362,"about_ca_topic_score_gemma":0.00012134435,"teacher_disagreement_score":0.03467352,"about_ca_system_score_codex":0.000032535932,"about_ca_system_score_gemma":0.00006690163,"threshold_uncertainty_score":0.9999583},"labels":[{"model":"gemma","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"low"},{"model":"gpt","categories":[],"domain":null,"study_design":"bench_or_experimental","genre":"empirical","about_ca_system":false,"about_ca_topic":false,"confidence":"high"}],"label_agreement":"agree"},{"id":"W4251929638","doi":"10.1016/j.healun.2020.01.796","title":"IL-17 Receptor on Donor Cells Regulates Acute and Chronic Lung Allograft Rejection Potentiated by Repeated Endotoxin Inhalations","year":2020,"lang":"en","type":"article","venue":"The Journal of Heart and Lung Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Hospital; University Health Network","funders":"","keywords":"Lung; Lung transplantation; Medicine; Transplantation; Airway; Pathology; Immunology; Internal medicine; Surgery","score_opus":0.005336526513554866,"score_gpt":0.2146490815870706,"score_spread":0.20931255507351573,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4251929638","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911301,0.002735209,0.00070208625,0.0049676853,0.00017479237,0.00021381609,0.000032440163,0.000022688882,0.000021164537],"genre_scores_gemma":[0.9931834,0.006141153,0.00004146258,0.0002186833,0.00004251292,0.0000023237906,0.00017391684,0.000009674571,0.00018690927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99903786,0.0003333534,0.00034979638,0.000099083685,0.00004779922,0.00013212739],"domain_scores_gemma":[0.9995181,0.00013938607,0.00019098162,0.00006392449,0.00006244937,0.000025163192],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034408094,0.00011282513,0.00017319905,0.00008186486,0.00025516315,0.000022387452,0.00005418168,0.00011692256,0.00005989325],"category_scores_gemma":[0.000010481723,0.00008030216,0.00004899272,0.000105192485,0.000069154274,0.00020939796,0.000005653375,0.00026670157,0.0000069359644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002155244,0.000016682003,0.00010676455,0.000035211015,0.00021592625,0.0000021356154,0.0015524472,0.00008419786,0.98588115,0.000008400799,0.009536323,0.0004055362],"study_design_scores_gemma":[0.0017022872,0.00060933514,0.0037125393,0.00011288205,0.0004345297,0.00036330638,0.000121635625,0.0005004201,0.98731804,0.000008712537,0.0050121583,0.00010418148],"about_ca_topic_score_codex":0.000016862337,"about_ca_topic_score_gemma":0.0000039737115,"teacher_disagreement_score":0.004749002,"about_ca_system_score_codex":0.0000273007,"about_ca_system_score_gemma":0.000025641015,"threshold_uncertainty_score":0.3274627},"labels":[],"label_agreement":null},{"id":"W4254651173","doi":"10.1042/bj3600285","title":"Ectopic expression of interferon regulatory factor-1 potentiates granulocytic differentiation","year":2001,"lang":"en","type":"article","venue":"Biochemical Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":22,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Transcription factor; Biology; Ectopic expression; IRF8; Haematopoiesis; Cell biology; Cellular differentiation; Interferon regulatory factors; Myeloid; Progenitor cell; Cytokine; Immunology; Molecular biology; Stem cell; Cell culture; Gene; Genetics","score_opus":0.009827126921214364,"score_gpt":0.22262341687003379,"score_spread":0.2127962899488194,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254651173","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99683386,0.0017430814,0.00076142786,0.000060971528,0.00043372926,0.0000591476,0.0000015310775,0.000019496327,0.000086727785],"genre_scores_gemma":[0.99921376,0.0001838483,0.000023164062,0.000011641513,0.00006095235,0.0000017310635,0.00003452222,0.000007896024,0.00046249435],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991519,0.00013047551,0.0003706502,0.000109653345,0.000054432236,0.0001828801],"domain_scores_gemma":[0.99948573,0.000043394488,0.00022441112,0.0001416887,0.00008170002,0.000023054836],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000109761015,0.00010912116,0.00017511881,0.000113622074,0.00008986545,0.000013823601,0.00014785354,0.00020806454,0.0007725835],"category_scores_gemma":[0.00006621883,0.0000843675,0.00012038816,0.00006146039,0.000093932365,0.00011888991,0.000042566513,0.00025264165,0.000047180336],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034972487,0.000056981582,0.004814662,0.000009846767,0.000035761077,0.0000020670313,0.00010740962,7.176698e-7,0.9919813,0.000017065257,0.0008336923,0.001790733],"study_design_scores_gemma":[0.0007923749,0.000100384466,0.067485996,0.0001075443,0.000019812445,0.00014295729,0.000048670525,0.0000047119315,0.930575,0.00014205584,0.00049533084,0.0000851198],"about_ca_topic_score_codex":0.000004127516,"about_ca_topic_score_gemma":2.3410517e-7,"teacher_disagreement_score":0.06267133,"about_ca_system_score_codex":0.000046400804,"about_ca_system_score_gemma":0.000026650752,"threshold_uncertainty_score":0.8459247},"labels":[],"label_agreement":null},{"id":"W4254666654","doi":"10.1111/j.1939-1676.2006.tb00717.x","title":"The Effect of Glucocorticoids on Canine Lymphocyte Marker Expression and Apoptosis","year":2006,"lang":"en","type":"article","venue":"Journal of Veterinary Internal Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":25,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"University of Guelph","keywords":"Medicine; CD90; Apoptosis; Lymphocyte; Immunology; CD3; CD8; DNA fragmentation; Canine Lymphoma; Glucocorticoid; Prednisolone; Flow cytometry; Internal medicine; Immune system; Endocrinology; Biology; Lymphoma; In vitro; CD44; Programmed cell death","score_opus":0.006599854496796881,"score_gpt":0.25530836957920955,"score_spread":0.24870851508241268,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4254666654","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99233407,0.005394824,0.00006325251,0.0005109097,0.00096522004,0.00007708658,7.7712076e-7,0.000004017777,0.0006498462],"genre_scores_gemma":[0.99846596,0.00046443616,0.000010742551,0.00003135431,0.00015566839,0.0000025386994,0.0000022058198,0.000007669376,0.00085943745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987903,0.0003413913,0.00058291917,0.00007104746,0.00008057264,0.00013375454],"domain_scores_gemma":[0.99862796,0.0006529413,0.0005061411,0.00012282896,0.00007406666,0.000016075217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007321908,0.000121066485,0.000310619,0.00012388833,0.00008147422,0.000005310707,0.00015298493,0.00007482304,0.000096319185],"category_scores_gemma":[0.00021123976,0.00005900566,0.00007299674,0.000046677993,0.00022083601,0.000071584385,0.000043670985,0.00019911435,0.000006171343],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012497481,0.00001906866,0.001236517,0.000027357133,0.000084762,0.000030607323,0.000075710144,0.0000036778022,0.9644713,0.000018371422,0.002350439,0.019184701],"study_design_scores_gemma":[0.0047290726,0.020006023,0.024044173,0.0011581994,0.00007407731,0.0019600922,0.00007717243,0.000008281784,0.9242924,0.000025471749,0.023556126,0.00006890204],"about_ca_topic_score_codex":0.00008036066,"about_ca_topic_score_gemma":8.1688e-7,"teacher_disagreement_score":0.040178902,"about_ca_system_score_codex":0.000043902593,"about_ca_system_score_gemma":0.000017938117,"threshold_uncertainty_score":0.2406181},"labels":[],"label_agreement":null},{"id":"W4280654333","doi":"10.2147/jir.s357866","title":"Toll-like Interleukin -1 Receptor Regulator (TILRR) Protein, a Major Modulator of Inflammation, is Expressed in Normal Human and Macaque Tissues and PBMCs","year":2022,"lang":"en","type":"article","venue":"Journal of Inflammation Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research","keywords":"Biology; Inflammation; Western blot; Peripheral blood mononuclear cell; Cecum; Ileum; Lamina propria; Uterus; Immunology; Internal medicine; Endocrinology; Pathology; Medicine; Epithelium; Gene; In vitro","score_opus":0.0208629863400169,"score_gpt":0.30378935839745214,"score_spread":0.28292637205743526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4280654333","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963279,0.0010924024,0.000029274837,0.001657673,0.00012906,0.00062781706,0.000010859377,0.000010764824,0.00011426624],"genre_scores_gemma":[0.9977965,0.00013719288,0.00016538853,0.000014651292,0.00008160699,0.00007885331,0.000030690822,0.00001994282,0.0016751753],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9965425,0.0012703054,0.0012886543,0.00021333464,0.00035085034,0.00033433258],"domain_scores_gemma":[0.99823046,0.00020094171,0.0006246421,0.0002554803,0.0006416155,0.000046848767],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0032041885,0.0001672615,0.00041374206,0.0012132865,0.0003756602,0.000055635875,0.00031076698,0.0001854366,0.0008788758],"category_scores_gemma":[0.00038918923,0.00015821056,0.00007241723,0.00039583465,0.00026211186,0.0006145355,0.00030976112,0.00089046353,0.000015421663],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013845449,0.000049927894,0.0015718205,0.0001457148,0.00009326485,0.0000123509535,0.005000737,0.000045477853,0.98347914,0.00097290456,0.0013764853,0.005867615],"study_design_scores_gemma":[0.0027675834,0.00080580276,0.009366195,0.00023293686,0.0000136831795,0.00012362616,0.002289853,0.00014795783,0.9567047,0.0006285189,0.026754526,0.00016464292],"about_ca_topic_score_codex":0.00009438686,"about_ca_topic_score_gemma":0.000032657565,"teacher_disagreement_score":0.026774483,"about_ca_system_score_codex":0.00016736033,"about_ca_system_score_gemma":0.00021066052,"threshold_uncertainty_score":0.96230733},"labels":[],"label_agreement":null},{"id":"W4281552996","doi":"10.1159/000524461","title":"Regulation of TLR10 Expression and Its Role in Chemotaxis of Human Neutrophils","year":2022,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Cell biology; Biology; Chemotaxis; Innate immune system; TLR4; TLR2; Pattern recognition receptor; Gene knockdown; Immunology; Immune system; Receptor; Signal transduction; Cell culture; Biochemistry","score_opus":0.010771830124834906,"score_gpt":0.24196250215388013,"score_spread":0.23119067202904522,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4281552996","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9963426,0.0031890874,0.0000029247935,0.000085443266,0.0001134539,0.000076443124,0.000003795367,0.0000024601945,0.00018381723],"genre_scores_gemma":[0.99972683,0.00011850574,0.000015242857,0.000008225456,0.000006896337,0.0000016700862,0.000011568467,0.000005340639,0.00010571876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985571,0.0005957598,0.0006425277,0.00004987308,0.000058834376,0.0000959014],"domain_scores_gemma":[0.9988553,0.000074426134,0.00079481426,0.00012938587,0.00013877731,0.000007307763],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010148796,0.000070802496,0.00026975432,0.00030576086,0.0001280418,0.0000025310296,0.00016495258,0.00007592036,0.00023544804],"category_scores_gemma":[0.000091685644,0.0000643709,0.00006292435,0.00015569142,0.000054670443,0.00017442525,0.00013394805,0.00044481226,9.197679e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00075931626,0.00013500631,0.0008380016,0.0000240556,0.000030144985,0.0000012668874,0.0015859908,0.00008122116,0.99493957,0.00015266781,0.000044969467,0.0014077825],"study_design_scores_gemma":[0.0012279735,0.0005073951,0.1266867,0.000070449656,0.000011051682,0.000066759145,0.0007864487,0.000009856187,0.8698103,0.00034616434,0.00042972347,0.00004719981],"about_ca_topic_score_codex":0.00005637899,"about_ca_topic_score_gemma":0.0000017036722,"teacher_disagreement_score":0.1258487,"about_ca_system_score_codex":0.0000407962,"about_ca_system_score_gemma":0.00004396567,"threshold_uncertainty_score":0.2624969},"labels":[],"label_agreement":null},{"id":"W4282014591","doi":"10.1152/ajplung.00073.2022","title":"Sensitive physiological readouts to evaluate countermeasures for lipopolysaccharide-induced lung alterations in mice","year":2022,"lang":"en","type":"article","venue":"American Journal of Physiology-Lung Cellular and Molecular Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Mitacs; Canadian Institutes of Health Research; Fonds de recherche du Québec; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Lipopolysaccharide; Lung; Lung volumes; Context (archaeology); Medicine; Pulmonary compliance; Compliance (psychology); Functional residual capacity; Inflammation; Internal medicine; Respiratory physiology; Cardiology; Anesthesia; Biology; Psychology","score_opus":0.010148711698833834,"score_gpt":0.26386208431845537,"score_spread":0.2537133726196215,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282014591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99609035,0.00080789404,0.0012333669,0.00062780257,0.00059110735,0.00057469367,0.000030993022,0.000018978139,0.00002481553],"genre_scores_gemma":[0.9979943,0.00004858193,0.00021296613,0.0013260605,0.00008973105,0.00011597172,0.00013158312,0.00003198077,0.000048825354],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9962236,0.001837354,0.0007598195,0.0005041371,0.00009933403,0.0005757409],"domain_scores_gemma":[0.9983925,0.00033047004,0.0006396301,0.00027848803,0.000293056,0.00006581868],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008477459,0.0003269322,0.0009399265,0.0004064609,0.00034900324,0.000012992564,0.00034956122,0.00012572028,0.00006696722],"category_scores_gemma":[0.00020327013,0.00029595595,0.0002866203,0.00026776106,0.0003222349,0.000106137704,0.00023448849,0.0006459679,0.000010331715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003221877,0.0001776498,0.000014267069,0.000020748712,0.00034858054,0.00001711384,0.0010449506,0.0011902822,0.99165994,0.00057424215,0.00049686397,0.0012335028],"study_design_scores_gemma":[0.0024573626,0.004393459,0.00865654,0.00004633425,0.0001877205,0.00021023453,0.0018821694,0.00056474685,0.9796469,0.00058036536,0.00091895304,0.00045517882],"about_ca_topic_score_codex":0.00011785906,"about_ca_topic_score_gemma":0.0000043465534,"teacher_disagreement_score":0.012012986,"about_ca_system_score_codex":0.00015285438,"about_ca_system_score_gemma":0.00018711908,"threshold_uncertainty_score":0.9999493},"labels":[],"label_agreement":null},{"id":"W4282830706","doi":"10.3390/vaccines10060927","title":"Kinome Analysis to Define Mechanisms of Adjuvant Action: PCEP Induces Unique Signaling at the Injection Site and Lymph Nodes","year":2022,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Kinome; Proinflammatory cytokine; Biology; Immunology; Adjuvant; Immune system; Cell biology; Signal transduction; Inflammation","score_opus":0.015089026042986356,"score_gpt":0.23911328933104165,"score_spread":0.2240242632880553,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282830706","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99692345,0.0012345556,0.00089403836,0.00054268556,0.00020365353,0.00012366261,0.0000134623515,0.000026610824,0.000037857622],"genre_scores_gemma":[0.9983304,0.000053197473,0.00003581779,0.00011273664,0.000013977674,0.000041633644,0.000097806835,0.000006812053,0.0013076103],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991183,0.00034284237,0.000224692,0.0001585323,0.000035010253,0.00012060072],"domain_scores_gemma":[0.99949217,0.00014171656,0.0001342034,0.00016949845,0.000054299577,0.000008142939],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043270065,0.0000943557,0.00019672899,0.00029580234,0.0004940474,0.000008752345,0.00008919812,0.000059207832,0.00081462535],"category_scores_gemma":[0.000041596053,0.00007012368,0.00007036775,0.0005688249,0.000014571885,0.000069776084,0.00016992699,0.000104374005,0.000022397166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00041318493,0.000018956665,0.0022554977,0.000006817342,0.00032134668,5.722572e-7,0.0007851454,0.0018616754,0.99143976,0.00033350306,0.00006210221,0.0025014146],"study_design_scores_gemma":[0.00042043606,0.000176013,0.06196722,0.0000057676707,0.0002961766,0.00006272474,0.0015885085,0.000048492337,0.93299747,0.00021725686,0.0021046198,0.00011534076],"about_ca_topic_score_codex":0.00037401172,"about_ca_topic_score_gemma":0.0000931529,"teacher_disagreement_score":0.059711725,"about_ca_system_score_codex":0.000049063114,"about_ca_system_score_gemma":0.000022662696,"threshold_uncertainty_score":0.89195764},"labels":[],"label_agreement":null},{"id":"W4282918318","doi":"10.1152/ajpcell.00088.2022","title":"Proteoglycans in Toll-like receptor responses and innate immunity","year":2022,"lang":"en","type":"review","venue":"American Journal of Physiology-Cell Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":26,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Environmental Health Sciences; Mallinckrodt Pharmaceuticals; National Institutes of Health; University of Texas Southwestern Medical Center","keywords":"Innate immune system; Extracellular matrix; Cell biology; Biology; Immune system; Innate lymphoid cell; Pattern recognition receptor; Toll-like receptor; Receptor; Neuroscience; Immunology; Genetics","score_opus":0.01938131517776168,"score_gpt":0.27924195983259154,"score_spread":0.25986064465482983,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4282918318","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14782222,0.85011,0.0000013394113,0.00007414519,0.001156661,0.000649265,0.000053112683,0.00002691606,0.00010634826],"genre_scores_gemma":[0.0107897995,0.9877287,0.00009102813,0.0001602392,0.00012686545,0.00014274368,0.00027744353,0.00008259727,0.00060059276],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9887525,0.007820422,0.0019411474,0.0006173863,0.000087221684,0.00078134745],"domain_scores_gemma":[0.9938344,0.001965399,0.0033371872,0.0006931877,0.000108100714,0.000061772975],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0013098925,0.0007570092,0.004117327,0.0011439751,0.00028230925,0.000013324393,0.0010110148,0.0005240429,0.0010726111],"category_scores_gemma":[0.00029829668,0.00061320973,0.00070134347,0.000754329,0.0015586668,0.00019020504,0.0005380366,0.0029980354,0.00014111726],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0039471886,0.00049328135,0.000004394568,0.0016213435,0.0007869824,0.00002316266,0.000673949,0.000009851795,0.59510726,0.00004807812,0.0015670874,0.3957174],"study_design_scores_gemma":[0.0012782904,0.003369347,0.00033060246,0.0008523957,0.00030021838,0.00052056863,0.0006573112,4.6923998e-7,0.0015122795,0.0001242591,0.9904638,0.0005904501],"about_ca_topic_score_codex":0.00015491713,"about_ca_topic_score_gemma":0.000004694869,"teacher_disagreement_score":0.9888967,"about_ca_system_score_codex":0.00025357126,"about_ca_system_score_gemma":0.0008982376,"threshold_uncertainty_score":0.99984056},"labels":[],"label_agreement":null},{"id":"W4283837217","doi":"10.1159/000525548","title":"Endotoxemic Shock: A Molecular Phenotype in Sepsis","year":2022,"lang":"en","type":"review","venue":"The Nephron journals/Nephron journals","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"","keywords":"Sepsis; Medicine; Organ dysfunction; Phenotype; Shock (circulatory); Septic shock; Acute kidney injury; Inflammation; Narrative review; Immunology; Clinical phenotype; Intensive care medicine; Bioinformatics; Internal medicine; Gene; Biology; Genetics","score_opus":0.045485941055513096,"score_gpt":0.3272708094606402,"score_spread":0.28178486840512706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4283837217","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009132127,0.9924981,0.00019215593,0.00062765565,0.0022076198,0.0017330657,0.000067475376,0.00010177999,0.001658913],"genre_scores_gemma":[0.0007829991,0.99351656,0.000045439756,0.0008195234,0.00047081982,0.00039872777,0.00023469543,0.0002698244,0.0034614012],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9851718,0.0073585785,0.004038545,0.00097090064,0.0005778507,0.0018823022],"domain_scores_gemma":[0.99314606,0.0014473926,0.0034180318,0.001609837,0.00020585128,0.00017281975],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.006164766,0.0014918158,0.0037800348,0.002113705,0.0012531434,0.00037853135,0.002640988,0.0013532899,0.030812118],"category_scores_gemma":[0.00037243214,0.0011030883,0.0022605727,0.0018337705,0.0003445856,0.0005637932,0.00071809243,0.0071929623,0.002449315],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027234803,0.00028366246,0.000012833524,0.0011353272,0.0022714029,0.0005642704,0.0008132192,0.000077564844,0.010174227,0.000088887755,0.019032834,0.96527344],"study_design_scores_gemma":[0.0016464761,0.00025230128,0.00004062755,0.0061490014,0.0013906085,0.0053205146,0.00042000812,0.0000059123545,0.00039764657,0.00033536772,0.98291796,0.0011235643],"about_ca_topic_score_codex":0.00008505915,"about_ca_topic_score_gemma":0.000041082294,"teacher_disagreement_score":0.96414983,"about_ca_system_score_codex":0.0014131904,"about_ca_system_score_gemma":0.0016953768,"threshold_uncertainty_score":0.99994314},"labels":[],"label_agreement":null},{"id":"W4286433050","doi":"10.1007/s00441-022-03671-4","title":"Toll-like receptor 10 has a role in human macrophage response against Streptococcus pneumoniae","year":2022,"lang":"en","type":"article","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Innate immune system; Streptococcus pneumoniae; Pattern recognition receptor; Macrophage; Immunology; Microbiology; Phagocytosis; Toll-like receptor; Immune system; Chlamydophila pneumoniae; TLR2; Chlamydia; In vitro; Chlamydiaceae","score_opus":0.028599784217293152,"score_gpt":0.3053646277488766,"score_spread":0.2767648435315835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4286433050","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9884056,0.0064907786,9.126213e-7,0.0006021005,0.00014949744,0.0005715392,0.0000182247,0.000036817364,0.003724545],"genre_scores_gemma":[0.918394,0.0001376476,0.0000043439873,0.000026289204,0.00002208356,0.0002463097,0.00015600405,0.00002239605,0.0809909],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99571854,0.0027730542,0.00032498178,0.0004043677,0.00014084352,0.00063820323],"domain_scores_gemma":[0.99905604,0.00039391336,0.000059260157,0.0003741778,0.000073898154,0.000042684776],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0028616,0.00015401655,0.00023656695,0.0005196677,0.0012416668,0.000063757565,0.00032312318,0.00016363333,0.0051303385],"category_scores_gemma":[0.0000994071,0.00015680966,0.000043316468,0.0004250007,0.0002995064,0.000095336225,0.00052159774,0.000961717,0.0009079703],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015315334,0.00017403995,0.0004247704,0.000021551925,0.000016183592,0.000084980034,0.0017973796,0.000013028412,0.9779927,0.000058213664,0.0071659368,0.010719669],"study_design_scores_gemma":[0.0011149854,0.0006341741,0.0020667217,0.000012705148,0.000002474009,0.000011527028,0.0016498178,0.000008096479,0.42858896,0.00005594872,0.56572014,0.00013445938],"about_ca_topic_score_codex":0.00015938345,"about_ca_topic_score_gemma":0.000025607926,"teacher_disagreement_score":0.55855423,"about_ca_system_score_codex":0.0001502091,"about_ca_system_score_gemma":0.0001780833,"threshold_uncertainty_score":0.99986994},"labels":[],"label_agreement":null},{"id":"W4287577165","doi":"10.1073/pnas.2201146119","title":"Interferon-β regulates proresolving lipids to promote the resolution of acute airway inflammation","year":2022,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":30,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Efferocytosis; Inflammation; Immunology; Phagocytosis; ARDS; Receptor; Lipid signaling; TLR9; Biology; Lung; Medicine; Internal medicine; Macrophage","score_opus":0.01938314265932226,"score_gpt":0.26890040088964934,"score_spread":0.24951725823032708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4287577165","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9914968,0.00018775702,0.0000027257415,0.0068110656,0.000063257765,0.0004020132,0.000011280255,0.000010874207,0.0010142542],"genre_scores_gemma":[0.9990494,0.000011781226,0.00021037382,0.00006617767,0.000026863197,0.00004529251,0.0000011399508,0.0000033519118,0.000585567],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99889654,0.000043602435,0.000441034,0.00015931598,0.00031696315,0.00014256025],"domain_scores_gemma":[0.9990643,0.00008627636,0.00058002776,0.000016355358,0.00024674126,0.000006280267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024849414,0.00007836368,0.00013543545,0.00021055753,0.0005203386,0.000010057305,0.0008088054,0.000064227715,0.000050944822],"category_scores_gemma":[0.00036380222,0.000048091,0.000073399926,0.0007132193,0.000496651,0.00030634284,0.00039635177,0.00021426572,0.0000033462372],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019716861,0.000018990586,0.00018741202,0.000022187807,0.000043841337,1.2670147e-9,0.0015264783,0.00027590914,0.98144156,0.013981816,0.0010054711,0.0012991907],"study_design_scores_gemma":[0.00016456636,0.0002436814,0.010910903,0.0000647178,0.000022339469,0.000013196304,0.00040631747,0.0003435389,0.9808625,0.003940803,0.0029718152,0.000055621847],"about_ca_topic_score_codex":0.000007446255,"about_ca_topic_score_gemma":6.061691e-8,"teacher_disagreement_score":0.01072349,"about_ca_system_score_codex":0.000055350672,"about_ca_system_score_gemma":0.00004518626,"threshold_uncertainty_score":0.40020764},"labels":[],"label_agreement":null},{"id":"W4289336382","doi":"10.1073/pnas.2111726119","title":"Lymph-derived chemokines direct early neutrophil infiltration in the lymph nodes upon <i>Staphylococcus aureus</i> skin infection","year":2022,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Alberta Bone and Joint Health Institute; University of Calgary","funders":"Canadian Institutes of Health Research; Government of Canada","keywords":"Lymph; Lymphatic system; CXCL1; Chemokine; Staphylococcus aureus; Lymph node; Immunology; CXCL2; Medicine; Innate lymphoid cell; Inflammation; High endothelial venules; Pathology; Biology; Innate immune system; Immune system; Chemokine receptor; Bacteria","score_opus":0.01881995592456037,"score_gpt":0.2560505312521921,"score_spread":0.23723057532763175,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289336382","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99442613,0.0002447304,4.5322054e-7,0.0020911084,0.00007359616,0.00022521525,0.000008513066,0.000014681201,0.0029155996],"genre_scores_gemma":[0.9994352,0.00005559104,0.000015301912,0.00027980504,0.00003968945,0.00006953304,0.0000021572973,0.0000038468534,0.00009886876],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988491,0.000088102286,0.0003738494,0.00019593508,0.0003268462,0.00016616478],"domain_scores_gemma":[0.9992158,0.00018503502,0.0004541067,0.00001527851,0.00012480584,0.000005016657],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020082314,0.000105440755,0.00014985638,0.00026435673,0.0005614803,0.00002465043,0.0006142406,0.00009355112,0.000044120465],"category_scores_gemma":[0.00028606606,0.00006850447,0.00008870275,0.0009641136,0.00039396647,0.00045188566,0.00013319815,0.00021232251,0.000003927419],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010016414,0.00006466926,0.0128851505,0.000017173523,0.000016561811,6.8940422e-9,0.00092360494,0.00031078386,0.9797813,0.0050568404,0.000224678,0.0006190664],"study_design_scores_gemma":[0.00032132256,0.00004297181,0.42376328,0.000017857396,0.000009020549,0.000009720003,0.00026572013,0.000053561078,0.57198393,0.002284205,0.0011856304,0.000062786174],"about_ca_topic_score_codex":0.00011008392,"about_ca_topic_score_gemma":2.867837e-7,"teacher_disagreement_score":0.41087812,"about_ca_system_score_codex":0.000071329676,"about_ca_system_score_gemma":0.00005453803,"threshold_uncertainty_score":0.4318509},"labels":[],"label_agreement":null},{"id":"W4289711886","doi":"10.1101/2022.08.02.502487","title":"Coupling of protein condensates to ordered lipid domains determines functional membrane organization","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institute of General Medical Sciences; National Institutes of Health; Volkswagen Foundation; Hospital for Sick Children; Welch Foundation; Howard Hughes Medical Institute","keywords":"Lipid raft; Membrane; Lipid microdomain; Signal transducing adaptor protein; Biophysics; Transmembrane protein; Chemistry; Lipid bilayer; Cell biology; Coupling (piping); Signal transduction; Receptor; Biology; Biochemistry; Materials science","score_opus":0.010595859523887582,"score_gpt":0.20384229492121797,"score_spread":0.19324643539733038,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4289711886","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99535406,0.0006250325,0.0008055015,0.00019646305,0.00155482,0.0010934975,0.00012728422,0.0002397618,0.0000035996597],"genre_scores_gemma":[0.9988385,0.00005280909,0.0004658055,0.000063134394,0.00013145212,0.00025436174,0.000013945023,0.00009597743,0.0000840559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979921,0.00015946911,0.00071774545,0.000617793,0.00013604767,0.00037683288],"domain_scores_gemma":[0.997751,0.000106130596,0.00055879576,0.0007614918,0.0007776597,0.00004491559],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005794908,0.00040070232,0.0005634081,0.00043106705,0.00031242613,0.000050327144,0.00040611613,0.0005209699,0.0014819539],"category_scores_gemma":[0.00063240126,0.00044116395,0.00010822079,0.0006239399,0.00010990035,0.00011581563,0.00056912843,0.00057061,0.00018031895],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002439565,0.000099526755,0.0013960022,0.00024571826,0.0002882969,0.000005926735,0.000028214294,0.0009147148,0.9963155,0.00031246402,0.00014843304,0.0000012570614],"study_design_scores_gemma":[0.0007314653,0.00010297274,0.018334556,0.00018799493,0.000102033904,7.462235e-8,0.0000126680925,0.000049837865,0.97440934,6.5288964e-7,0.0056252433,0.0004431558],"about_ca_topic_score_codex":0.000047923615,"about_ca_topic_score_gemma":0.0000020135137,"teacher_disagreement_score":0.021906145,"about_ca_system_score_codex":0.00018957004,"about_ca_system_score_gemma":0.0006202582,"threshold_uncertainty_score":0.999804},"labels":[],"label_agreement":null},{"id":"W4290759913","doi":"10.1093/infdis/jiac340","title":"Intestinal Injury in Ugandan Children Hospitalized With Malaria","year":2022,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta; Toronto General Hospital; University of Toronto; University Health Network","funders":"Canadian Institutes of Health Research; Women and Children's Health Research Institute; Canada Research Chairs; Children's Health Research Institute","keywords":"Medicine; Gastroenterology; Internal medicine; Multiple organ dysfunction syndrome; Systemic inflammation; Organ dysfunction; Prospective cohort study; Inflammation; Malaria; Acute kidney injury; Confidence interval; Immunology; Sepsis","score_opus":0.0026978906635530945,"score_gpt":0.2039160295526152,"score_spread":0.20121813888906212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290759913","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978964,0.0012504993,0.00003888318,0.00028708988,0.00021412654,0.00013688584,0.000008156682,0.000016586344,0.00015142166],"genre_scores_gemma":[0.9996692,0.000071969574,0.0000029813416,0.00009867197,0.000027873126,0.000008574742,0.000011912869,0.000009251486,0.00009955808],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99886423,0.0005976526,0.0002791853,0.00005478236,0.00005926144,0.00014486053],"domain_scores_gemma":[0.9994022,0.00010102006,0.00029530821,0.00012253753,0.00006541298,0.000013477049],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00044001854,0.00009238683,0.00017414699,0.00017899094,0.00024836822,0.000010928113,0.00019218853,0.000024296121,0.00051216123],"category_scores_gemma":[0.00011419527,0.000057021796,0.00006601677,0.00020103589,0.000095778596,0.00011605666,0.0000702828,0.0003792614,0.000014775793],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009548452,0.00063134445,0.9499285,0.000008601601,0.0004412292,0.000036924146,0.001067483,0.00086163357,0.03065286,0.0003342844,0.0031982313,0.0032904244],"study_design_scores_gemma":[0.002881578,0.0023481308,0.98531765,0.000038741357,0.00016129274,0.0027861244,0.00023381057,0.000002303623,0.004708286,0.0003332876,0.0010661941,0.00012258433],"about_ca_topic_score_codex":0.00007694952,"about_ca_topic_score_gemma":0.0000037048567,"teacher_disagreement_score":0.035389137,"about_ca_system_score_codex":0.0000783308,"about_ca_system_score_gemma":0.00014421427,"threshold_uncertainty_score":0.56078064},"labels":[],"label_agreement":null},{"id":"W4290768749","doi":"10.1016/j.celrep.2022.111167","title":"Klebsiella pneumoniae hijacks the Toll-IL-1R protein SARM1 in a type I IFN-dependent manner to antagonize host immunity","year":2022,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; Science Foundation Ireland; Queen's University Belfast; Queen's University; Wellcome Trust","keywords":"TRIF; Innate immune system; Biology; Klebsiella pneumoniae; Microbiology; Cell biology; Immunity; Inflammation; Inflammasome; Effector; Immune system; Toll-like receptor; Immunology; Escherichia coli; Gene; Genetics","score_opus":0.008659972316524076,"score_gpt":0.22105263662543534,"score_spread":0.21239266430891127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290768749","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98880935,0.0014273345,0.0000073329643,0.0010186338,0.0012115766,0.0010181364,0.000006798728,0.000056170906,0.00644466],"genre_scores_gemma":[0.9667907,0.000033290697,0.000010747021,0.00026270284,0.000024961242,0.00021124799,0.00007693192,0.000025977415,0.032563493],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978961,0.0006205514,0.0005905088,0.00035387956,0.00010540791,0.00043360068],"domain_scores_gemma":[0.99874973,0.00008138628,0.00026841628,0.00080800254,0.00006805752,0.000024405183],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0012598948,0.00020229352,0.0002645084,0.00017076921,0.00049733894,0.000028987304,0.0003024586,0.00013537619,0.0012449282],"category_scores_gemma":[0.00013460794,0.0001643576,0.000089984,0.00034291545,0.00006473566,0.00007403964,0.00045678025,0.00070906366,0.00039520484],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038314893,0.00017486502,0.0011525585,0.000013752663,0.000033386015,0.0005046076,0.0014635891,0.00008360379,0.9908696,0.00005270027,0.004015869,0.0012523241],"study_design_scores_gemma":[0.0004866913,0.00036047716,0.009798283,0.000023047845,0.000022143884,0.00093408907,0.0015149213,0.0000044234057,0.6640932,0.00011441714,0.32235625,0.0002920761],"about_ca_topic_score_codex":0.00062240683,"about_ca_topic_score_gemma":0.00007719294,"teacher_disagreement_score":0.32677642,"about_ca_system_score_codex":0.00016461223,"about_ca_system_score_gemma":0.00020480811,"threshold_uncertainty_score":0.99966806},"labels":[],"label_agreement":null},{"id":"W4290785918","doi":"10.21203/rs.3.rs-1796185/v1","title":"Pulmonary Neutrophil Recruitment in Response to Inhaled LPS is Impaired in CD4 Deficient Mice","year":2022,"lang":"en","type":"preprint","venue":"Research Square","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Bronchoalveolar lavage; Inflammation; Tumor necrosis factor alpha; Chemotaxis; Ex vivo; In vivo; Infiltration (HVAC); Lung; Phagocytosis; Chemistry; Immunology; Motility; Secretion; Biology; Endocrinology; Internal medicine; Medicine; Cell biology; Receptor","score_opus":0.09504536038327169,"score_gpt":0.39015476956080547,"score_spread":0.2951094091775338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4290785918","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97939557,0.0074698753,0.0000046465952,0.006689509,0.00049828866,0.004656952,0.00015319408,0.00006603442,0.0010659145],"genre_scores_gemma":[0.98981833,0.0008197228,0.00003097652,0.00014473556,0.00003176843,0.003900287,0.00057218113,0.000058987775,0.0046229926],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9868753,0.009283977,0.0009792437,0.0011292701,0.0003922051,0.0013400221],"domain_scores_gemma":[0.9970655,0.0011928566,0.00015523542,0.0012530908,0.00025834536,0.00007500406],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.008696266,0.0004093833,0.00066834135,0.003110202,0.00032507916,0.000065228036,0.0010165157,0.000747853,0.002130684],"category_scores_gemma":[0.0010951171,0.00042920353,0.00022400598,0.001441848,0.00015983754,0.00009135121,0.0033146073,0.0035859304,0.0011625291],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.056040272,0.0020113364,0.0047487076,0.00068264606,0.00017247873,0.0030302228,0.019369453,0.0019309608,0.8858858,0.000228171,0.007835583,0.018064378],"study_design_scores_gemma":[0.0076232976,0.0045874966,0.42917225,0.0038859209,0.000044595206,0.00056583073,0.01831857,0.00035162581,0.15579346,0.0018298837,0.37538248,0.0024446123],"about_ca_topic_score_codex":0.0020951338,"about_ca_topic_score_gemma":0.00018160602,"teacher_disagreement_score":0.73009235,"about_ca_system_score_codex":0.002259375,"about_ca_system_score_gemma":0.0012504166,"threshold_uncertainty_score":0.999816},"labels":[],"label_agreement":null},{"id":"W4291960433","doi":"","title":"Mechanism of action of tumor necrosis factor antagonists. Proceedings of the Canadian expert roundtable meeting, Banff, Canada, November 28-30, 2003.","year":2005,"lang":"en","type":"other","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Action (physics); Tumor necrosis factor alpha; Tumor necrosis factor α; Internal medicine","score_opus":0.01394443802033527,"score_gpt":0.20476219183388558,"score_spread":0.19081775381355032,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4291960433","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22034037,0.00915394,0.0000111639765,0.0017645377,0.008211114,0.0068792263,0.0017346859,0.00013726893,0.7517677],"genre_scores_gemma":[0.3952239,0.00014770932,0.000022784796,0.000119904245,0.00007159554,0.00025309518,0.00005563975,0.000118507865,0.60398686],"study_design_codex":"not_applicable","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986707,0.00005046552,0.00048260382,0.00022569372,0.00010876518,0.00046178157],"domain_scores_gemma":[0.9985457,0.000021011516,0.00089055055,0.00023630216,0.00026782538,0.000038606995],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00021004523,0.00024783832,0.0004942201,0.00022984145,0.000104192695,0.000015289761,0.0003381041,0.00043985315,0.001715819],"category_scores_gemma":[0.00015640052,0.0001987439,0.00009398562,0.00025332184,0.00011163862,0.000103225255,0.000047251488,0.00023529709,0.0000067981405],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017554301,0.00008570254,0.0005778969,0.00030826908,0.00068858,8.3351324e-7,0.0003811068,7.142731e-7,0.25461045,0.0018476249,0.73501307,0.006310219],"study_design_scores_gemma":[0.0003148069,0.000011839351,0.0037052194,0.00008218407,0.00003789327,0.000006813338,0.000081616075,4.4757527e-7,0.49951455,0.000003709425,0.49610516,0.00013576674],"about_ca_topic_score_codex":0.9699385,"about_ca_topic_score_gemma":0.96219164,"teacher_disagreement_score":0.24490409,"about_ca_system_score_codex":0.00054976396,"about_ca_system_score_gemma":0.0012184815,"threshold_uncertainty_score":0.99919677},"labels":[],"label_agreement":null},{"id":"W4293780405","doi":"10.1371/journal.pbio.3001554","title":"The antimicrobial peptide cathelicidin drives development of experimental autoimmune encephalomyelitis in mice by affecting Th17 differentiation","year":2022,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institute of Genetics; Medical Research Council; University of Edinburgh; Royal Society; Action Medical Research","keywords":"Cathelicidin; Experimental autoimmune encephalomyelitis; Biology; Immunology; Autoimmunity; Multiple sclerosis; Microglia; Interleukin 17; Inflammation; Cytokine; Interleukin 23; Immune system; Innate immune system","score_opus":0.009422098532022036,"score_gpt":0.22889881715363636,"score_spread":0.21947671862161433,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4293780405","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99505424,0.0038632164,0.000040608742,0.00016698081,0.0004132939,0.00028548634,0.000016747617,0.000029368173,0.00013005646],"genre_scores_gemma":[0.99901795,0.00006836101,0.00005967163,0.00003042363,0.000010609367,0.00011401745,0.0003864147,0.000011029081,0.00030149645],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99819446,0.0007444963,0.00048658074,0.00022387237,0.000032345513,0.00031827355],"domain_scores_gemma":[0.9992784,0.00029441854,0.00025036777,0.00014487462,0.000025568594,0.000006365293],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004025586,0.00014076443,0.00023779686,0.00010932714,0.00061187096,0.000007532001,0.00028663955,0.00010453145,0.00020621814],"category_scores_gemma":[0.00007092003,0.00011527183,0.000056925994,0.00012145686,0.0001540074,0.00005307343,0.00024852736,0.00026132772,0.000032209136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022280804,0.00019183797,0.0013077175,0.000005849605,0.00008791806,4.6427002e-7,0.005695559,0.0000026679481,0.98802847,0.00016710076,0.00021075741,0.004078881],"study_design_scores_gemma":[0.0007682668,0.00015799343,0.011753834,0.000015600424,0.000008237032,0.000013717582,0.0023895637,0.000012489149,0.9788349,0.00001738027,0.0059005697,0.00012744869],"about_ca_topic_score_codex":0.0001558846,"about_ca_topic_score_gemma":0.00003257905,"teacher_disagreement_score":0.010446116,"about_ca_system_score_codex":0.00012583008,"about_ca_system_score_gemma":0.00008116309,"threshold_uncertainty_score":0.47060785},"labels":[],"label_agreement":null},{"id":"W4294232767","doi":"10.1615/critrevimmunol.v22.i4.50","title":"Role of IFN-g in Allograft Rejection","year":2002,"lang":"en","type":"article","venue":"Critical Reviews in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":82,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Immunology; CTL*; Interferon; Immune system; Cytokine; Major histocompatibility complex; Transplant rejection; Transplantation; Inflammation; Organ transplantation; Medicine; Biology; CD8; Internal medicine","score_opus":0.021058021391438832,"score_gpt":0.282765060680639,"score_spread":0.2617070392892002,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294232767","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.56723756,0.41987932,0.000078300625,0.0010340314,0.0007647424,0.00056384417,0.0000023802324,0.00003960205,0.010400197],"genre_scores_gemma":[0.9779616,0.021239053,0.000118085605,0.00009368055,0.000011533382,0.00008522613,0.000013501103,0.000010440153,0.00046690583],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975423,0.0009327764,0.00087963685,0.00023405041,0.00002308985,0.00038811454],"domain_scores_gemma":[0.9990766,0.00044436852,0.00009366328,0.00033045132,0.00004604951,0.0000088374845],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00067433616,0.0001478792,0.0005692599,0.00034029054,0.000037815906,0.00000383997,0.00020538905,0.00037163228,0.0016219766],"category_scores_gemma":[0.0023357884,0.00013646264,0.00010940852,0.00035182503,0.00039353137,0.00012979288,0.00006614238,0.0004682949,0.0010500519],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013211707,0.00030878984,0.0009968342,0.000062567786,0.000021191618,0.0000055674554,0.0006224887,8.478528e-7,0.8113512,0.016082536,0.00043389734,0.16998199],"study_design_scores_gemma":[0.002409555,0.0007236157,0.03581089,0.00082552026,0.0000420324,0.0002200173,0.00048774626,0.000063616135,0.16789055,0.007998175,0.7830592,0.00046909825],"about_ca_topic_score_codex":0.000090692665,"about_ca_topic_score_gemma":0.00005715601,"teacher_disagreement_score":0.78262526,"about_ca_system_score_codex":0.00005825109,"about_ca_system_score_gemma":0.0000143239085,"threshold_uncertainty_score":0.9997277},"labels":[],"label_agreement":null},{"id":"W4294349425","doi":"10.1523/jneurosci.20-09-03456.2000","title":"Role of Microglial-Derived Tumor Necrosis Factor in Mediating CD14 Transcription and Nuclear Factor κ B Activity in the Brain during Endotoxemia","year":2000,"lang":"en","type":"article","venue":"Journal of Neuroscience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":176,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre hospitalier de l'Université Laval","funders":"Medical Research Council; Medical Research Council Canada","keywords":"Tumor necrosis factor alpha; Cytokine; Circumventricular organs; Autocrine signalling; Microglia; Biology; Lipopolysaccharide; Paracrine signalling; Proinflammatory cytokine; Endocrinology; Parenchyma; Internal medicine; Medicine; Immunology; Receptor; Pathology; Inflammation; Central nervous system","score_opus":0.010932116410054229,"score_gpt":0.22503485424501377,"score_spread":0.21410273783495953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294349425","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9992898,0.00012717847,0.0000014417109,0.0003402441,0.00010477491,0.00010166573,0.000005047846,0.000003282836,0.000026574304],"genre_scores_gemma":[0.9997121,0.00013975051,0.00000887608,0.00009821256,0.000009930058,0.0000010830728,2.0119289e-7,0.0000045624515,0.000025266096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99894416,0.00036153637,0.00034441156,0.00010932299,0.000066849185,0.00017374445],"domain_scores_gemma":[0.9994973,0.00015736415,0.00023142672,0.00008038798,0.00002178778,0.000011715561],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000336513,0.00008288452,0.0001829029,0.00014755422,0.00008817891,0.000021028229,0.00020403853,0.0000551235,0.000034396868],"category_scores_gemma":[0.00023643444,0.000060414608,0.000051015522,0.00016800938,0.00013293806,0.00040264023,0.000013329484,0.0003291856,0.000002018621],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032810026,0.000052854448,0.0019017664,0.00000838612,0.0000016855554,0.000008963416,0.0051451675,0.0000071779828,0.98815584,0.000002971423,0.000001639123,0.004385425],"study_design_scores_gemma":[0.0005528661,0.00011545205,0.41347322,0.000024652318,0.0000019806541,0.00013266678,0.00022549667,0.000020390264,0.58524364,0.000010259707,0.00016252091,0.000036870348],"about_ca_topic_score_codex":0.000043123277,"about_ca_topic_score_gemma":0.000010376081,"teacher_disagreement_score":0.41157144,"about_ca_system_score_codex":0.000025969946,"about_ca_system_score_gemma":0.000036836682,"threshold_uncertainty_score":0.24636361},"labels":[],"label_agreement":null},{"id":"W4294958676","doi":"10.1038/s41467-022-32587-4","title":"IFITM3 restricts virus-induced inflammatory cytokine production by limiting Nogo-B mediated TLR responses","year":2022,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":42,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Center for Advancing Translational Sciences; Cardiff University; University of Oxford; Chinese Academy of Medical Sciences; National Institute for Health and Care Research; Health and Care Research Wales; Wellcome Trust; National Institute of Neurological Disorders and Stroke; Medical Research Council; Wellcome","keywords":"Pathogenesis; TLR2; Cytokine; Cell biology; Viral pathogenesis; Transmembrane protein; Biology; Inflammation; Virus; Immunology; Signal transduction; TLR4; Viral replication; Receptor","score_opus":0.020627229628498108,"score_gpt":0.2708076714962676,"score_spread":0.2501804418677695,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4294958676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96420896,0.020460883,0.0000069119947,0.011000637,0.001161023,0.00066165306,0.00015514658,0.00038262745,0.0019621605],"genre_scores_gemma":[0.99303067,0.0010154999,0.000111867426,0.00046216935,0.000047102385,0.00033422516,0.0026626552,0.000037196805,0.0022986345],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964878,0.0021388896,0.0005502091,0.00033761995,0.00013040603,0.00035509118],"domain_scores_gemma":[0.9964378,0.0010101299,0.00038122502,0.0019216903,0.00022158428,0.000027603171],"candidate_categories":["sts","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0011868143,0.00022142114,0.00024327658,0.0003770869,0.0020573589,0.000029432385,0.0012182464,0.0004350117,0.0001955633],"category_scores_gemma":[0.002340528,0.00023750844,0.00009949751,0.00074931193,0.00017544611,0.0002623861,0.0007920845,0.0025994855,0.0002409358],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043045942,0.00018247972,0.0005843958,0.0000060488196,0.00009857923,0.000001850607,0.0006069317,0.000008077916,0.95008594,0.0009678541,0.04502598,0.0020014034],"study_design_scores_gemma":[0.0006198967,0.00012975067,0.0060146167,0.00001816821,0.000043764503,0.00007506871,0.0006023044,0.000020273712,0.31864437,0.000039825758,0.6735339,0.0002580275],"about_ca_topic_score_codex":0.000052659096,"about_ca_topic_score_gemma":0.00007849169,"teacher_disagreement_score":0.63144153,"about_ca_system_score_codex":0.00023369525,"about_ca_system_score_gemma":0.00024370449,"threshold_uncertainty_score":0.99970156},"labels":[],"label_agreement":null},{"id":"W4295445025","doi":"10.1111/cts.13387","title":"Manufacturing‐dependent change in biological activity of the <scp>TLR4</scp> agonist <scp>GSK1795091</scp> and implications for lipid A analog development","year":2022,"lang":"en","type":"article","venue":"Clinical and Translational Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Princess Margaret Cancer Centre","funders":"Chugai Pharmaceutical; Sanofi Genzyme; Merck Sharp and Dohme; EMD Serono; Genentech; MacroGenics; Silverback Therapeutics; Principia Biopharma; Puma Biotechnology; F-star Therapeutics; Aminex Therapeutics; BeiGene; Mirati Therapeutics; Jounce Therapeutics; Wellcome Trust; Array BioPharma; Five Prime Therapeutics; Conquer Cancer Foundation; Taiho Pharmaceutical; National Institutes of Health; Regeneron Pharmaceuticals; BioMarin Pharmaceutical; Daiichi Sankyo Europe; National Cancer Institute; Intuitive Surgical; Gilead Sciences; Bristol-Myers Squibb; ImmunoMedics; Adenoid Cystic Carcinoma Research Foundation; Eli Lilly and Company; American Society of Clinical Oncology; GlaxoSmithKline; Gateway for Cancer Research; Exelixis; Sanofi; Abbott Laboratories; Incyte; Pfizer; Amgen","keywords":"Medicine; Pharmacodynamics; Agonist; Chills; Adverse effect; Cytokine; Pharmacology; Pharmacokinetics; Nausea; TLR4; Clinical endpoint; Immunotherapy; Clinical trial; Immune system; Internal medicine; Immunology; Receptor","score_opus":0.07507872474596153,"score_gpt":0.3287074352560683,"score_spread":0.2536287105101068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295445025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99737316,0.00043952776,0.00018063525,0.0011251277,0.00020415398,0.000451717,0.000047498,0.000010198296,0.00016798131],"genre_scores_gemma":[0.99927634,0.00009694818,0.00012929033,0.00013843768,0.000021798072,0.00014872297,0.000028225786,0.000003105638,0.00015715612],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.9987545,0.00021004902,0.0003860154,0.0003368662,0.00007427249,0.00023832319],"domain_scores_gemma":[0.9982698,0.0013824555,0.00014466273,0.0001311148,0.000042493488,0.000029487697],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016405956,0.00009839921,0.00018756349,0.000086158536,0.00080138026,0.000015912465,0.0002637715,0.00009590783,0.000011662043],"category_scores_gemma":[0.0003060659,0.00007008901,0.00006564514,0.00020152201,0.00094490394,0.00012642407,0.00015791472,0.0002467204,0.000001815145],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013500825,0.0008208503,0.61610645,0.000048359492,0.00008775037,8.239389e-7,0.0036788539,0.000041304324,0.23194778,0.010883526,0.0001581232,0.13609117],"study_design_scores_gemma":[0.0006683379,0.00011439103,0.95323074,0.000007053027,0.000008544938,0.000013213455,0.000069912654,0.000030817064,0.021709977,0.0011672467,0.02295589,0.000023882438],"about_ca_topic_score_codex":0.000024471881,"about_ca_topic_score_gemma":0.000040216546,"teacher_disagreement_score":0.3371243,"about_ca_system_score_codex":0.000016616037,"about_ca_system_score_gemma":0.00018497165,"threshold_uncertainty_score":0.616365},"labels":[],"label_agreement":null},{"id":"W4295895361","doi":"10.1016/j.intimp.2022.109218","title":"Inhibition of MyD88 attenuates angiotensin II-induced hypertensive kidney disease via regulating renal inflammation","year":2022,"lang":"en","type":"article","venue":"International Immunopharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"Science and Technology Plan Project of Wenzhou, China; National Natural Science Foundation of China","keywords":"Inflammation; TLR4; Fibrosis; Kidney; Angiotensin II; Receptor; Chemistry; Endocrinology; Internal medicine; Medicine; Pharmacology; Cancer research; Immunology","score_opus":0.011906019465834009,"score_gpt":0.25410954024034765,"score_spread":0.24220352077451365,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4295895361","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98973155,0.0005240206,0.00012303748,0.005782842,0.0029583066,0.00036522467,0.00008033418,0.000077996585,0.00035667565],"genre_scores_gemma":[0.9960758,0.000030140482,0.000055775447,0.000806507,0.00014048451,0.00012903038,0.0016435889,0.000025042287,0.001093597],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99798924,0.0005371262,0.00071705144,0.00031170863,0.00015104457,0.0002938398],"domain_scores_gemma":[0.9985524,0.00017418014,0.0005559026,0.00021657249,0.00046349724,0.000037479975],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00045034505,0.00020616817,0.00029889634,0.00043136132,0.0005567655,0.00001128208,0.00029360253,0.000117907664,0.0032651734],"category_scores_gemma":[0.00027880236,0.00022550902,0.00017218947,0.00021861978,0.0001390415,0.00029155053,0.000459782,0.00041211073,0.00011734927],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023554894,0.00014357023,0.00016207706,0.000008847872,0.00042851272,0.000029011146,0.0006320599,0.00054068235,0.9847956,0.0004913487,0.00457945,0.005833362],"study_design_scores_gemma":[0.0031128195,0.00033261758,0.0038125787,0.00003543626,0.000118895696,0.00016893096,0.0001815973,0.0012760473,0.9580072,0.0006129349,0.03208681,0.0002541068],"about_ca_topic_score_codex":0.000100127036,"about_ca_topic_score_gemma":0.0000012499833,"teacher_disagreement_score":0.027507357,"about_ca_system_score_codex":0.00022141557,"about_ca_system_score_gemma":0.00020127748,"threshold_uncertainty_score":0.997646},"labels":[],"label_agreement":null},{"id":"W4298141614","doi":"10.3389/fimmu.2022.994480","title":"Distinct spatial distribution and roles of Kupffer cells and monocyte-derived macrophages in mouse acute liver injury","year":2022,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":27,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; Canadian Liver Foundation; Public Health Agency; Public Health Agency of Canada","keywords":"Monocyte; Kupffer cell; Liver injury; Macrophage; Cell biology; Distribution (mathematics); Immunology; Biology; Pathology; Medicine; In vitro; Endocrinology; Biochemistry; Mathematics","score_opus":0.003862543103037613,"score_gpt":0.1966789754255267,"score_spread":0.1928164323224891,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4298141614","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98624057,0.011634218,0.0008988455,0.00008447837,0.00066371093,0.00025362524,0.00018725991,0.000018616565,0.000018678498],"genre_scores_gemma":[0.99704546,0.0020498715,0.00010824274,0.00001773841,0.0000055529636,0.000057936013,0.00029467963,0.00001230863,0.00040823364],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984481,0.00059979816,0.00037752005,0.00025889004,0.000029492843,0.00028621813],"domain_scores_gemma":[0.99956477,0.00006653846,0.00015370658,0.00018532595,0.000021325626,0.000008347033],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00026703716,0.00015923937,0.00038437205,0.00026182685,0.00013675436,0.000006653254,0.00015202744,0.00019242293,0.00008812341],"category_scores_gemma":[0.000037331734,0.00016827113,0.00003650399,0.00013226795,0.0004065212,0.000098540186,0.00032028602,0.0004035824,0.000004821712],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032680586,0.00010991525,0.0123876445,0.000017268738,0.00017076544,0.000021922258,0.001255745,0.000007912395,0.95112836,0.000097498116,0.0007548116,0.030780114],"study_design_scores_gemma":[0.0033899895,0.00072593376,0.2148728,0.000018758452,0.000049875674,0.0000664619,0.0016375248,0.00018593796,0.7702825,0.00021806537,0.0082584815,0.0002936341],"about_ca_topic_score_codex":0.0004435555,"about_ca_topic_score_gemma":0.000055424884,"teacher_disagreement_score":0.20248516,"about_ca_system_score_codex":0.000106844745,"about_ca_system_score_gemma":0.000039035724,"threshold_uncertainty_score":0.6861897},"labels":[],"label_agreement":null},{"id":"W4298406980","doi":"","title":"Abstracts of the 37th Annual Meeting of the Society for Leukocyte Biology. October 21-23, 2004, Toronto, Canada.","year":2004,"lang":"en","type":"other","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Library science; Biology; Computer science","score_opus":0.007285984799078221,"score_gpt":0.19793165300904433,"score_spread":0.19064566820996612,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4298406980","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.09765256,0.25821307,0.00009346377,0.0053593386,0.0256094,0.019423226,0.0072627855,0.00030161685,0.58608454],"genre_scores_gemma":[0.24847819,0.00041661516,0.000041910407,0.00035016722,0.00021020853,0.00056651066,0.00028526655,0.00017132878,0.74947983],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987769,0.00013579147,0.0004353779,0.00019810228,0.000051226172,0.00040260179],"domain_scores_gemma":[0.99855477,0.00012856296,0.00078499364,0.00043254072,0.00008725886,0.000011890001],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00043966927,0.00020979386,0.00036656312,0.000020728094,0.00010992242,0.000003140062,0.0004720842,0.00057360815,0.00014421497],"category_scores_gemma":[0.00020938183,0.00012445143,0.0004160345,0.000064202686,0.00026886293,0.000032846943,0.000101758254,0.00021455126,0.0000030580495],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001645284,0.00005685374,0.00022673947,0.00019768198,0.0013528579,1.6235896e-7,0.00041573367,0.000024856387,0.008194382,0.00038944432,0.9785974,0.010379377],"study_design_scores_gemma":[0.00086062663,0.000011703719,0.013115102,0.000100452366,0.00013367027,0.000004646596,0.00020214073,1.4318775e-7,0.064827144,0.00002872307,0.9205646,0.00015105336],"about_ca_topic_score_codex":0.1984261,"about_ca_topic_score_gemma":0.3230571,"teacher_disagreement_score":0.25779647,"about_ca_system_score_codex":0.0002555887,"about_ca_system_score_gemma":0.0007388585,"threshold_uncertainty_score":0.80691165},"labels":[],"label_agreement":null},{"id":"W4299594890","doi":"","title":"Enhanced responses in antigen primed dogs after administration of a complex microbial immune stimulating compound","year":2017,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Immune system; Antigen; Immunology; Microbiology; Biology; Medicine","score_opus":0.18824368783758258,"score_gpt":0.5213305200565287,"score_spread":0.3330868322189461,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4299594890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9921083,0.005445305,0.00015925406,0.00012875973,0.00046178768,0.00059187715,0.000038886035,0.000015589618,0.0010502693],"genre_scores_gemma":[0.99809074,0.0011204738,0.00015045748,0.000037957474,0.000037369802,0.000023907505,0.0000698152,0.000027008464,0.00044224117],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99704653,0.00076393294,0.0013689077,0.00032600327,0.00012861622,0.00036598128],"domain_scores_gemma":[0.9966966,0.00045173088,0.0018195384,0.0007090766,0.00028915735,0.00003392401],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014324788,0.0002772346,0.0008721905,0.0006262516,0.00040274934,0.00046356968,0.0017693912,0.0002347279,0.004128573],"category_scores_gemma":[0.0007436393,0.00026813743,0.00018022774,0.00020820116,0.00040105305,0.0016988256,0.0006615475,0.00038250876,0.000037420225],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008818424,0.00021714754,0.08677543,0.00005538308,0.00017062617,0.000022915136,0.00038660527,0.000015840522,0.89903396,0.000020382413,0.0003651458,0.0041181277],"study_design_scores_gemma":[0.0010525348,0.000027026186,0.50093305,0.00030594744,0.000020827954,0.000016629108,0.000043315064,0.000007218742,0.49667335,0.00012446534,0.0006410109,0.00015460937],"about_ca_topic_score_codex":0.0011723649,"about_ca_topic_score_gemma":0.00018031434,"teacher_disagreement_score":0.41415763,"about_ca_system_score_codex":0.00006947375,"about_ca_system_score_gemma":0.00026810385,"threshold_uncertainty_score":0.9999771},"labels":[],"label_agreement":null},{"id":"W4300186694","doi":"10.1007/3-540-27806-0_957","title":"Maturation of the Immune Response","year":2006,"lang":"en","type":"book-chapter","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Immune system; Biology; Immunology","score_opus":0.007258891489039759,"score_gpt":0.19839315160580423,"score_spread":0.19113426011676446,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4300186694","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008761156,0.006744021,0.00006354585,0.000896242,0.0014292066,0.0004856656,0.000025521475,0.00006334915,0.98153126],"genre_scores_gemma":[0.090307534,0.00004733055,0.000009262004,0.000040040795,0.000020019557,0.0000038282915,0.00013837499,0.00002046394,0.90941316],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990826,0.0001456277,0.00047277886,0.0001390018,0.000039956212,0.00012003606],"domain_scores_gemma":[0.9988463,0.00018535767,0.00037553333,0.0004944652,0.00009553641,0.0000028002373],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00033489926,0.00018113713,0.00026421525,0.00010483237,0.00010121333,0.0000059856075,0.00021983267,0.0005799545,0.001988142],"category_scores_gemma":[0.000056220484,0.000116530966,0.00022781407,0.000021285674,0.00018153364,0.0000464523,0.0000811382,0.00030505066,0.00077575305],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026672836,0.000011858686,0.0000014758132,0.000018588242,0.00012925851,8.923467e-7,0.000051381918,0.000003641992,0.8818019,0.084424,0.029041648,0.0018480882],"study_design_scores_gemma":[0.00031383673,0.000056491215,0.0021354938,0.00010281767,0.000050078743,0.000025082943,0.000006204178,5.385312e-7,0.39122364,0.0011775584,0.6047772,0.00013100426],"about_ca_topic_score_codex":0.000033540487,"about_ca_topic_score_gemma":0.0000043817668,"teacher_disagreement_score":0.57573557,"about_ca_system_score_codex":0.00003872329,"about_ca_system_score_gemma":0.00010188523,"threshold_uncertainty_score":0.9989242},"labels":[],"label_agreement":null},{"id":"W4300199480","doi":"10.26443/msurj.v2i1.134","title":"Lipopolysaccharide-induced lung injury does not require production of reactive oxygen species by NAD(P)H oxidase","year":2007,"lang":"en","type":"article","venue":"McGill Science Undergraduate Research Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Victoria Hospital; McGill University","funders":"","keywords":"TLR4; Lipopolysaccharide; NAD(P)H oxidase; NAD+ kinase; Inflammation; Oxidase test; Reactive oxygen species; Chemistry; Endothelium; Signal transduction; NADPH oxidase; Nitric oxide; Immunology; Biology; Biochemistry; Enzyme; Endocrinology","score_opus":0.038056124744931676,"score_gpt":0.34634630890951246,"score_spread":0.30829018416458076,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4300199480","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98672056,0.00023111467,0.00014150322,0.009375821,0.0014339847,0.00037005523,0.000017898457,0.000034922068,0.0016741676],"genre_scores_gemma":[0.99200237,0.0005165581,0.00006758081,0.000039543072,0.000114572846,0.0000065019667,0.000008705667,0.000016879847,0.0072272667],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9959734,0.0006763011,0.0007577686,0.00049920345,0.0008598193,0.0012334964],"domain_scores_gemma":[0.9971556,0.0003476311,0.00042171782,0.00043456975,0.0015055775,0.00013490382],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.016479691,0.00020708705,0.00030292847,0.0012708757,0.0028894288,0.00012271017,0.000930841,0.0001867238,0.00009133428],"category_scores_gemma":[0.002893998,0.0001469865,0.000117702606,0.0012570394,0.0017487968,0.0018768023,0.0002850455,0.0012931138,0.00007891917],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008971276,0.00012301837,0.00008967014,0.000017147337,0.000062557665,0.000013155823,0.0002321092,0.0000010732349,0.97907895,0.0049278815,0.0024473262,0.012109987],"study_design_scores_gemma":[0.00040188103,0.0003868962,0.0008363395,0.00009521216,0.000011518833,0.0002404174,0.0012848951,0.0000055021337,0.981753,0.0019310192,0.0128708435,0.00018245971],"about_ca_topic_score_codex":0.00023281672,"about_ca_topic_score_gemma":0.000039289815,"teacher_disagreement_score":0.013585693,"about_ca_system_score_codex":0.0007271934,"about_ca_system_score_gemma":0.0005187534,"threshold_uncertainty_score":0.9984087},"labels":[],"label_agreement":null},{"id":"W4307825673","doi":"10.1101/2022.10.27.513985","title":"A cold-blooded vertebrate shows integration of antimicrobial defenses and tissue repair through fever","year":2022,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Comisión Nacional de Investigación Científica y Tecnológica; Directorate for Biological Sciences; University of Alberta","keywords":"Biology; Inflammation; Immune system; Thermoregulation; Pathogen; Immunology; Immunity; Cytokine; Downregulation and upregulation; Gene; Ecology; Genetics","score_opus":0.013764184184200117,"score_gpt":0.22686933010018118,"score_spread":0.21310514591598106,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4307825673","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99206567,0.0041250074,0.00060662784,0.00012995489,0.0015793751,0.0008803642,0.00026311775,0.0003279013,0.000021990405],"genre_scores_gemma":[0.99694216,0.0006673696,0.0018076085,0.00018400696,0.00007146794,0.00014859803,0.000008390525,0.00007935188,0.000091071655],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974153,0.00051798613,0.0007781329,0.0007634534,0.00010024888,0.00042484762],"domain_scores_gemma":[0.99794906,0.00012165013,0.00063979713,0.0009289442,0.00032821545,0.000032299642],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062488235,0.000492649,0.0007515203,0.00025258592,0.00029732808,0.00005862588,0.00035472855,0.00074330246,0.0003835576],"category_scores_gemma":[0.000253158,0.0005217698,0.00018540298,0.0002917322,0.0002736818,0.00026080286,0.00063031627,0.00089192094,0.000069848],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002533875,0.00014607937,0.0007464228,0.00025689203,0.00038666182,0.000018494286,0.00011056629,0.000011341461,0.99435574,0.0019408334,0.0017693507,0.0000042134866],"study_design_scores_gemma":[0.0009683365,0.00012435127,0.009572868,0.00024562416,0.00022830814,2.1140701e-7,0.000017912991,0.000022469983,0.96458185,0.0000036811005,0.023722334,0.00051206193],"about_ca_topic_score_codex":0.00021288755,"about_ca_topic_score_gemma":0.000008874528,"teacher_disagreement_score":0.029773915,"about_ca_system_score_codex":0.00014355837,"about_ca_system_score_gemma":0.00046648365,"threshold_uncertainty_score":0.9997234},"labels":[],"label_agreement":null},{"id":"W4308024461","doi":"","title":"Two SNPs in the promoter region of Toll-like receptor 4 gene are not associated with smoking in Saudi Arabia","year":2017,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Single-nucleotide polymorphism; Toll-like receptor; Gene; Genetics; Toll; Promoter; Biology; Receptor; Genotype; Gene expression; Innate immune system","score_opus":0.1717299437566702,"score_gpt":0.4667477889323015,"score_spread":0.29501784517563134,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4308024461","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99385905,0.0036838406,0.00002082433,0.00053739833,0.00038708668,0.0005606326,0.000012433739,0.000010263377,0.0009284786],"genre_scores_gemma":[0.9974747,0.0018210155,0.00001567861,0.0001533622,0.00003046565,0.00004132996,0.000032472304,0.000024318766,0.00040669495],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99731034,0.0010537724,0.0008185691,0.00029293954,0.00016551609,0.00035885043],"domain_scores_gemma":[0.99678457,0.0003374924,0.0019632124,0.0006823053,0.00021145557,0.000020938012],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024700842,0.00023944865,0.0007024622,0.000516207,0.00034089075,0.00031822472,0.0021844443,0.00022421917,0.00085097604],"category_scores_gemma":[0.00071059586,0.0001692607,0.00011099746,0.00032630708,0.0002461743,0.0013587689,0.00036662837,0.0006164792,0.000010367952],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014673905,0.0002762146,0.4922349,0.000030293637,0.00022324613,0.000057386314,0.0008842295,0.000028843519,0.4970614,0.000032412234,0.0033692238,0.0043344833],"study_design_scores_gemma":[0.0016949145,0.000026436248,0.76761425,0.0009568187,0.00003847225,0.000033619574,0.00014989951,0.0000040475416,0.22763811,0.00024783926,0.0014056042,0.0001899696],"about_ca_topic_score_codex":0.0011220066,"about_ca_topic_score_gemma":0.00056753453,"teacher_disagreement_score":0.2753794,"about_ca_system_score_codex":0.000110495064,"about_ca_system_score_gemma":0.00011346587,"threshold_uncertainty_score":0.93175906},"labels":[],"label_agreement":null},{"id":"W4310046493","doi":"10.1111/imr.13174","title":"Understanding inhibitory receptor function in neutrophils through the lens of <scp>CLEC12A</scp>","year":2022,"lang":"en","type":"review","venue":"Immunological Reviews","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Arthritis Society","keywords":"Receptor; Biology; Inhibitory postsynaptic potential; Collateral damage; Cell biology; Function (biology); Immunology; Inflammation; Signal transduction; Immune system; Neuroscience; Genetics","score_opus":0.24581391853588316,"score_gpt":0.32646717732823904,"score_spread":0.08065325879235588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310046493","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000054703087,0.99296945,0.00009875184,0.000059393813,0.0017470103,0.0021496157,0.000023809838,0.00006173893,0.002835516],"genre_scores_gemma":[0.00005059859,0.9974871,0.000015757681,0.000101320395,0.0000660158,0.0006502278,0.00044273585,0.000045129116,0.0011411161],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9911457,0.0053005465,0.00223611,0.0005928285,0.00010682488,0.0006180377],"domain_scores_gemma":[0.9949013,0.0025425374,0.0016076723,0.00090507953,0.00003228366,0.000011100622],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0021234849,0.00063296,0.002817115,0.00027294562,0.00037641564,0.000025165404,0.0008414342,0.0009523603,0.0016761838],"category_scores_gemma":[0.0018506158,0.0003738025,0.0011534668,0.0009538114,0.0004891479,0.00023432546,0.00042820498,0.002227418,0.0012311639],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005597524,0.00016289692,8.0636335e-7,0.002494481,0.00032265272,0.0000037223892,0.0003790878,0.0000010930266,0.002273285,0.0060993377,0.0044501293,0.98375654],"study_design_scores_gemma":[0.00036201644,0.00042484436,0.000008745794,0.0038452556,0.00036066436,0.000043377677,0.00039664167,6.3234296e-8,0.00008524792,0.00038372446,0.9939251,0.00016433798],"about_ca_topic_score_codex":0.000022271659,"about_ca_topic_score_gemma":0.0000022952825,"teacher_disagreement_score":0.98947495,"about_ca_system_score_codex":0.0006115893,"about_ca_system_score_gemma":0.00020195919,"threshold_uncertainty_score":0.9998714},"labels":[],"label_agreement":null},{"id":"W4310553596","doi":"10.1016/j.jaci.2022.09.033","title":"Human MD2 deficiency—an inborn error of immunity with pleiotropic features","year":2022,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Hospital for Sick Children","funders":"National Institute of Diabetes and Digestive and Kidney Diseases","keywords":"Biology; Induced pluripotent stem cell; Exome sequencing; TLR4; Cytokine; Immunology; Signal transduction; Mutation; Cell biology; Cancer research; Genetics; Gene","score_opus":0.022137073876065602,"score_gpt":0.3085080115739339,"score_spread":0.2863709376978683,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4310553596","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99037176,0.008092533,0.000031993684,0.00041050313,0.0006400613,0.00008285154,0.000004190788,0.000011666446,0.0003544333],"genre_scores_gemma":[0.9983196,0.0007169122,0.00009309454,0.00012418894,0.000034931447,0.0000041465237,0.000022838509,0.000013095647,0.0006711945],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968263,0.0015722328,0.0010935464,0.00017043532,0.0000792047,0.00025827455],"domain_scores_gemma":[0.99815774,0.0003017421,0.001004947,0.0003157864,0.00019310016,0.00002665917],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011828502,0.00016064564,0.000593008,0.00021433772,0.0004705356,0.000008745896,0.0004729004,0.00025551696,0.00071107934],"category_scores_gemma":[0.00014311717,0.00012211711,0.00017527519,0.00014047301,0.00069753954,0.00017199374,0.00022361011,0.0014158016,0.0000059214753],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.022369115,0.0047655567,0.013738596,0.000037959664,0.0083002215,0.00016985412,0.003453633,0.0003174271,0.8856935,0.020802552,0.0023846957,0.0379669],"study_design_scores_gemma":[0.0095372405,0.03252762,0.8834079,0.00006478086,0.0002855574,0.0030403666,0.006809511,0.000004334593,0.016824624,0.001141954,0.045934115,0.00042200237],"about_ca_topic_score_codex":0.00010459535,"about_ca_topic_score_gemma":0.000079578844,"teacher_disagreement_score":0.8696693,"about_ca_system_score_codex":0.00003128465,"about_ca_system_score_gemma":0.0001882742,"threshold_uncertainty_score":0.77858204},"labels":[],"label_agreement":null},{"id":"W4312070732","doi":"10.3389/fphys.2022.1059686","title":"Early mechanisms of neutrophil activation and transmigration in acute lung injury","year":2022,"lang":"en","type":"article","venue":"Frontiers in Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Institutes of Health","keywords":"Medicine; Lung; Neutrophil extracellular traps; Inflammation; Immunology; Intensive care medicine; Internal medicine","score_opus":0.003519391954806878,"score_gpt":0.2016849236412536,"score_spread":0.1981655316864467,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312070732","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9958754,0.00036266795,0.0028010765,0.00018485064,0.0005059694,0.00021465417,0.000009467877,0.000011083148,0.000034786048],"genre_scores_gemma":[0.99933237,0.000098037395,0.00020253436,0.00006264249,0.000004929965,0.000070753995,0.00011289984,0.000007342162,0.00010848205],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898595,0.0003983754,0.00025918306,0.00017215022,0.000022458426,0.00016190311],"domain_scores_gemma":[0.9997346,0.000029753384,0.00010574677,0.00011173239,0.000013714273,0.0000044513577],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018116343,0.00008637524,0.00023333724,0.00032213875,0.000069600515,0.0000017504337,0.000094741,0.00011138557,0.000052519998],"category_scores_gemma":[0.000009777229,0.00009182551,0.000031063973,0.0001995176,0.00006889204,0.0001223368,0.000046512214,0.0002504068,0.0000014827457],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015671907,0.000053294738,0.0011846803,0.00001055098,0.000045942863,8.230143e-7,0.0010730426,0.00009123198,0.9908159,0.001845881,0.00047379892,0.002837696],"study_design_scores_gemma":[0.0023135727,0.00080527825,0.2992149,0.000019419196,0.00002735717,0.000008043125,0.00087279646,0.00041671988,0.67829084,0.016890572,0.0009367478,0.00020375822],"about_ca_topic_score_codex":0.000102734644,"about_ca_topic_score_gemma":0.0000029169844,"teacher_disagreement_score":0.31252503,"about_ca_system_score_codex":0.00006107372,"about_ca_system_score_gemma":0.000029719902,"threshold_uncertainty_score":0.37445357},"labels":[],"label_agreement":null},{"id":"W4312083714","doi":"10.1016/j.jve.2022.100203","title":"OP 4.3 – 00112 Leaky reservoirs are associated with HIV-specific cd4 and CD8 T-cell responses","year":2022,"lang":"en","type":"article","venue":"Journal of Virus Eradication","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Université de Montréal","funders":"","keywords":"Human immunodeficiency virus (HIV); CD8; Biology; Virology; Immunology; Immune system","score_opus":0.016191298519321436,"score_gpt":0.2261124570120473,"score_spread":0.20992115849272586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4312083714","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.988799,0.008132616,0.00012506117,0.0021864735,0.0002488022,0.00012655428,0.000022077145,0.000018940707,0.00034047838],"genre_scores_gemma":[0.9947608,0.000861579,0.000068111774,0.0001342472,0.000039473947,0.000011629268,0.00006596301,0.000016767259,0.0040414426],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99824715,0.00086297106,0.00045263176,0.000136989,0.00012047544,0.00017976481],"domain_scores_gemma":[0.9983987,0.0002749144,0.000949355,0.00018374069,0.0001685385,0.000024740559],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011082835,0.00011782269,0.00023674426,0.00031452157,0.0004562179,0.000026336475,0.00019782207,0.00009625238,0.00044241754],"category_scores_gemma":[0.00017058906,0.00010040546,0.000060515667,0.00022880586,0.00010530751,0.00023851603,0.00005126081,0.0005064066,0.00004639337],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005488297,0.00027338718,0.0033822486,0.000009044165,0.00017899284,0.000035242836,0.0013028227,0.00010535144,0.95296025,0.00014132787,0.03452015,0.0016029099],"study_design_scores_gemma":[0.0061150882,0.0020510803,0.129865,0.00012688259,0.00015378653,0.0010029401,0.002299205,0.000025848653,0.26580587,0.00023381964,0.5919439,0.00037655653],"about_ca_topic_score_codex":0.000008597028,"about_ca_topic_score_gemma":0.000005606865,"teacher_disagreement_score":0.68715435,"about_ca_system_score_codex":0.00016389176,"about_ca_system_score_gemma":0.0001302517,"threshold_uncertainty_score":0.4844162},"labels":[],"label_agreement":null},{"id":"W4313030987","doi":"10.1189/jlb.68.6.897","title":"Role of IL-12 in macrophage activation during intracellular infection: IL-12 and mycobacteria synergistically release TNF-α and nitric oxide from macrophages via IFN-γ induction","year":2000,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":90,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"Macrophage; Intracellular; Biology; Macrophage-activating factor; Nitric oxide; Cytokine; Tumor necrosis factor alpha; Microbiology; Interferon gamma; In vitro; Immunology; Macrophage inflammatory protein; Alveolar macrophage; Interleukin; Cell biology; Biochemistry","score_opus":0.0050785227084457615,"score_gpt":0.20407490008749332,"score_spread":0.19899637737904757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313030987","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9974825,0.0019467572,0.00012636694,0.00006777744,0.00018413767,0.00011736951,0.00001089775,0.000012363452,0.00005185686],"genre_scores_gemma":[0.997233,0.0023289584,0.00013374731,0.00001999859,0.00011773311,0.0000037235038,0.00003671336,0.000013577693,0.000112570226],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99822956,0.00051627716,0.00077243673,0.00020617573,0.00003909592,0.00023647628],"domain_scores_gemma":[0.99907005,0.00017088844,0.000498741,0.00013841731,0.00008520999,0.000036680194],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036589865,0.0001865612,0.00044098182,0.00037254454,0.000104686995,0.00001560742,0.00008806787,0.00044071238,0.0003640694],"category_scores_gemma":[0.00016489426,0.00016482535,0.000063128675,0.00013179252,0.00021171458,0.00029343716,0.00004208228,0.0004791325,0.00001764351],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028170997,0.00006607277,0.0067917234,0.00002289421,0.00012558796,0.000018923502,0.0002419534,0.00002446419,0.95300716,0.000027939273,0.000008166929,0.03684802],"study_design_scores_gemma":[0.001493952,0.00023213183,0.43219262,0.000052549945,0.000041662483,0.00035902185,0.00006142484,0.000017272963,0.56366956,0.00021639607,0.0015583988,0.000105009145],"about_ca_topic_score_codex":0.00040840814,"about_ca_topic_score_gemma":0.000014446977,"teacher_disagreement_score":0.4254009,"about_ca_system_score_codex":0.00009652821,"about_ca_system_score_gemma":0.000063002786,"threshold_uncertainty_score":0.6721383},"labels":[],"label_agreement":null},{"id":"W4313222839","doi":"10.1002/eji.202149691","title":"Regulation of DC metabolism by nitric oxide in murine GM‐CSF cultures","year":2022,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; Nitric oxide; Metabolism; Cell biology; Immunology; Biochemistry; Endocrinology","score_opus":0.005637168360226516,"score_gpt":0.20471810170304364,"score_spread":0.19908093334281712,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313222839","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97459847,0.022909632,0.000099406105,0.0003907163,0.0005177625,0.00008911291,0.000007699769,0.000011204573,0.0013759914],"genre_scores_gemma":[0.99739593,0.0004941402,0.000087801265,0.000077018834,0.000026118469,0.0000022648835,0.000048579106,0.000019734665,0.0018484051],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9957419,0.002869762,0.00096375326,0.0001246353,0.00006807963,0.0002318808],"domain_scores_gemma":[0.9986326,0.00010558209,0.0008964716,0.00020998849,0.00014516983,0.000010203932],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015668931,0.00013853551,0.00039545004,0.00052248035,0.00012934071,0.000006118734,0.00041720434,0.000055710945,0.00080210244],"category_scores_gemma":[0.00021578852,0.00012311137,0.00013766625,0.00031683888,0.00013537302,0.00016864913,0.00017649712,0.0006660239,0.00006621277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012056404,0.00014023847,0.00018299959,0.000004964877,0.00019828671,0.000033364915,0.0005524576,0.00013834726,0.9863543,0.00038011372,0.005014282,0.0057950225],"study_design_scores_gemma":[0.004161118,0.0005961979,0.30159742,0.000028569528,0.00006214163,0.0012166629,0.000979776,0.0000023527693,0.40644792,0.00013898025,0.2845896,0.00017923974],"about_ca_topic_score_codex":0.000026817048,"about_ca_topic_score_gemma":7.3110954e-7,"teacher_disagreement_score":0.57990634,"about_ca_system_score_codex":0.00006017981,"about_ca_system_score_gemma":0.000059474874,"threshold_uncertainty_score":0.87824595},"labels":[],"label_agreement":null},{"id":"W4313349467","doi":"10.4049/jimmunol.190.supp.131.12","title":"The p110δ isoform of PI3K modulates TLR4 signalling and is crucial for survival from endotoxin and <i>Escherichia coli</i> infection (P4023)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"","keywords":"TLR4; Proinflammatory cytokine; Sepsis; Inflammation; Immune system; Escherichia coli infection; Biology; Immunology; Escherichia coli; Spleen; PI3K/AKT/mTOR pathway; Microbiology; Signal transduction; Cell biology; Gene","score_opus":0.009590146233530472,"score_gpt":0.21668463588210873,"score_spread":0.20709448964857827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313349467","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851201,0.012158101,0.00044989033,0.0010360865,0.0008847251,0.00029197722,0.000006377461,0.0000068848058,0.000045847653],"genre_scores_gemma":[0.9937702,0.0057530752,0.000063196254,0.00008321602,0.00006589733,0.000009801964,0.0000047101125,0.000011651462,0.00023829566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99867725,0.00041086198,0.0005678746,0.00008299054,0.00003581043,0.00022519744],"domain_scores_gemma":[0.9976453,0.0013698619,0.0005895272,0.00014321557,0.00024126981,0.000010825028],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008991299,0.0001348245,0.00032892244,0.00007351508,0.00036345707,0.000024529687,0.00018474284,0.000201387,0.000062615174],"category_scores_gemma":[0.0001971457,0.000077940065,0.0000850961,0.00006361563,0.00040535658,0.00020159184,0.000075088356,0.00032871222,0.000011889028],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013553663,0.000024720668,0.0007318979,0.0000070453666,0.0005122059,1.8543204e-7,0.0010912525,0.000009277475,0.98644423,0.0002229138,0.00023629685,0.0093645975],"study_design_scores_gemma":[0.0026017835,0.0012053138,0.08054785,0.00005781744,0.00018277645,0.000114468145,0.00078517,0.00007668907,0.9003113,0.0059106746,0.008064685,0.00014148699],"about_ca_topic_score_codex":0.00081226963,"about_ca_topic_score_gemma":0.00004009342,"teacher_disagreement_score":0.08613295,"about_ca_system_score_codex":0.000018616074,"about_ca_system_score_gemma":0.00005514418,"threshold_uncertainty_score":0.31783035},"labels":[],"label_agreement":null},{"id":"W4313349526","doi":"10.4049/jimmunol.190.supp.130.25","title":"Understanding altered toll-like receptor function in the elderly (P4251)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"TLR2; Immunology; Immune system; Receptor; Cytokine; Immunogenicity; Immunity; Pattern recognition receptor; Biology; Tuberculosis; Chemokine; Toll-like receptor; Disease; Mycobacterium tuberculosis; Medicine; TLR4; Innate immune system; Internal medicine","score_opus":0.03536902457019388,"score_gpt":0.2313070332510242,"score_spread":0.19593800868083033,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313349526","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.984336,0.0053039654,0.0016360007,0.0054442333,0.0023010531,0.00024934515,5.7983596e-7,0.000011381753,0.000717436],"genre_scores_gemma":[0.9982658,0.00071222195,0.000014950671,0.00032787575,0.00007300042,0.000007530919,0.0000062919926,0.000009650944,0.0005826974],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99756235,0.0014446806,0.0005733202,0.00007386404,0.000052820065,0.00029299175],"domain_scores_gemma":[0.9985917,0.0006029716,0.0004268268,0.0002750999,0.00009679627,0.0000066049624],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0014806021,0.00013052534,0.0002413392,0.00020952668,0.0002293418,0.000025435736,0.0004916726,0.00020118032,0.00091377384],"category_scores_gemma":[0.000108442684,0.00006867216,0.00009706323,0.00018162843,0.00022281932,0.00029421176,0.0000431687,0.0007312638,0.0006491058],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017033563,0.00008076345,0.00017407021,0.0000048568286,0.00034187632,0.0000025565257,0.003390527,0.000020440628,0.9609467,0.0020609924,0.02121081,0.01006305],"study_design_scores_gemma":[0.022124207,0.022298982,0.14527497,0.00056819746,0.00082344,0.012797337,0.13732356,0.000056874156,0.19829285,0.03872668,0.4203345,0.0013784225],"about_ca_topic_score_codex":0.00009522433,"about_ca_topic_score_gemma":0.000017521908,"teacher_disagreement_score":0.7626538,"about_ca_system_score_codex":0.00011245148,"about_ca_system_score_gemma":0.000068293906,"threshold_uncertainty_score":0.9999995},"labels":[],"label_agreement":null},{"id":"W4313349591","doi":"10.4049/jimmunol.190.supp.202.10","title":"Mechanisms of CD154 release from T cells and subsequent biological activities (P3375)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"CD154; Jurkat cells; Cell biology; CD40; Biology; Signal transduction; Immune system; Transmembrane protein; T cell; Cell signaling; Cell; Chemistry; Cytotoxic T cell; Immunology; Biochemistry; Receptor; In vitro","score_opus":0.01131055176274188,"score_gpt":0.20553601905036387,"score_spread":0.194225467287622,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313349591","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890959,0.008583048,0.00077219604,0.0007416041,0.00056544057,0.00013428567,0.0000064855594,0.000009246222,0.00009179429],"genre_scores_gemma":[0.99688447,0.0026022121,0.00014820693,0.00009111827,0.000019007122,0.0000034306145,0.000006378738,0.000008050007,0.00023712282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982824,0.00083624886,0.00054422347,0.0000824599,0.000035961068,0.00021873353],"domain_scores_gemma":[0.99836624,0.00067972695,0.00059467455,0.00022093284,0.00012529477,0.000013131793],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005249095,0.0001382962,0.00039038394,0.00012126357,0.00010475714,0.000008350577,0.00030221892,0.000258268,0.0008692451],"category_scores_gemma":[0.00010773377,0.000080037375,0.000094147974,0.000060597486,0.0004962139,0.00016999165,0.00010814569,0.00041360766,0.000120076635],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008394667,0.000054781176,0.000044167118,0.0000030626195,0.00034019467,0.0000027517463,0.0006327719,0.0000028011957,0.991808,0.0010259002,0.00041201327,0.0048341034],"study_design_scores_gemma":[0.0009830557,0.00089888915,0.009783307,0.000031806623,0.000065518914,0.00030133987,0.001861806,0.000002743252,0.97832936,0.0062028305,0.0014491137,0.0000902478],"about_ca_topic_score_codex":0.0002861994,"about_ca_topic_score_gemma":0.000002764921,"teacher_disagreement_score":0.013478645,"about_ca_system_score_codex":0.00002528483,"about_ca_system_score_gemma":0.000056698434,"threshold_uncertainty_score":0.95176244},"labels":[],"label_agreement":null},{"id":"W4313354584","doi":"10.4049/jimmunol.190.supp.112.28","title":"p62/SQSTM1 enhances NOD2-mediated signaling and cytokine production through stabilizing NOD2 oligomers (P4189)","year":2013,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"NOD2; Muramyl dipeptide; Cell biology; Peptidoglycan; Inflammasome; Receptor; TLR4; Signal transduction; Ubiquitin; Pattern recognition receptor; Chemistry; Biology; Biochemistry; Innate immune system","score_opus":0.010867449060111034,"score_gpt":0.22495993947695664,"score_spread":0.2140924904168456,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313354584","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97385174,0.020584272,0.0002171294,0.0035765124,0.0013164339,0.00025419286,0.0000014028608,0.00002785506,0.0001704871],"genre_scores_gemma":[0.994198,0.004941255,0.00015217847,0.00014618297,0.00011064028,0.000008389677,0.000010748128,0.000018634673,0.0004139587],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788135,0.00078809704,0.0007431621,0.0001475389,0.00006306506,0.000376806],"domain_scores_gemma":[0.99814737,0.0005254749,0.00071896845,0.00025771486,0.0003364384,0.000014043239],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010610844,0.00020218657,0.00040889363,0.0001774099,0.00032377493,0.000023919069,0.00030686628,0.00023600193,0.00049140636],"category_scores_gemma":[0.0005122592,0.00013089165,0.00008567151,0.00020176475,0.00053305126,0.00062860677,0.00008816641,0.0006570254,0.00028024142],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006537154,0.000046843426,0.00012609211,0.000013093734,0.00039633794,0.0000019546426,0.002829025,0.000024640736,0.9909073,0.00008447202,0.0005065249,0.004409975],"study_design_scores_gemma":[0.0010769701,0.00061320135,0.0046596546,0.000085483116,0.00010717729,0.0011298661,0.0040394566,0.000004696464,0.9786221,0.0004898143,0.00900593,0.00016567744],"about_ca_topic_score_codex":0.0001279921,"about_ca_topic_score_gemma":0.000005272004,"teacher_disagreement_score":0.020346299,"about_ca_system_score_codex":0.000056755795,"about_ca_system_score_gemma":0.00008559372,"threshold_uncertainty_score":0.5380555},"labels":[],"label_agreement":null},{"id":"W4313356086","doi":"10.4049/jimmunol.198.supp.129.1","title":"TLR9 activation impairs phagocytosis-induced neutrophil apoptosis and prolongs <i>E. coli</i>-induced acute lung injury","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Phagocytosis; Neutrophil elastase; Neutrophil extracellular traps; TLR9; Biology; Molecular biology; DNA damage; Elastase; Immunology; Microbiology; DNA; Inflammation; DNA methylation; Biochemistry; Enzyme; Gene; Gene expression","score_opus":0.012581789407196209,"score_gpt":0.26360608619862164,"score_spread":0.2510242967914254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356086","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9916545,0.0011077763,0.000053783806,0.005479093,0.0011883847,0.00031821456,0.0000031829427,0.000024700974,0.00017032247],"genre_scores_gemma":[0.9980822,0.0013158612,0.000020013447,0.00021292914,0.00010034518,0.000011471871,0.000006578922,0.000024026547,0.00022654238],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800056,0.0006930734,0.00066986895,0.00016016913,0.00007151557,0.0004048244],"domain_scores_gemma":[0.99731547,0.00024042359,0.0014888042,0.0006413441,0.00028917906,0.000024757905],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011148722,0.00025108294,0.0005019185,0.00023640886,0.0011401334,0.000068697824,0.00078255904,0.0004053698,0.00006465645],"category_scores_gemma":[0.0002979064,0.00017217529,0.00014378913,0.00008269968,0.00034987245,0.00071997324,0.00023143897,0.00086960505,0.000048999667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0052603697,0.000065064974,0.000164699,0.000008305984,0.0010334984,0.0000032171104,0.00097021525,7.214147e-7,0.9809197,0.00016567134,0.0006775653,0.010730946],"study_design_scores_gemma":[0.0023014117,0.0015748902,0.032158066,0.0000710784,0.00032376018,0.0005950489,0.0003515863,0.000005395904,0.96077615,0.0001592768,0.0015043952,0.00017894851],"about_ca_topic_score_codex":0.00010852315,"about_ca_topic_score_gemma":0.000002379795,"teacher_disagreement_score":0.031993367,"about_ca_system_score_codex":0.00009418284,"about_ca_system_score_gemma":0.0001696222,"threshold_uncertainty_score":0.87691},"labels":[],"label_agreement":null},{"id":"W4313356300","doi":"10.4049/jimmunol.198.supp.148.6","title":"The flavonoid galangin induces release of neutrophil extracellular traps and enhances resolution of <i>E. coli</i> pneumonia","year":2017,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hôpital Maisonneuve-Rosemont","funders":"","keywords":"Galangin; Phagocytosis; Inflammation; Neutrophil extracellular traps; Biology; Apoptosis; Respiratory burst; Microbiology; Escherichia coli; Immunology; Cell biology; Biochemistry; Flavonoid","score_opus":0.009661132347278036,"score_gpt":0.2283936873502348,"score_spread":0.21873255500295677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356300","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.94669265,0.050647378,0.000046418885,0.0018369257,0.00053594814,0.000102767466,0.0000026274242,0.000003423024,0.00013185423],"genre_scores_gemma":[0.988397,0.011090896,0.000014007468,0.000011148918,0.000031191285,0.0000017578607,0.000001692797,0.000007202264,0.00044507784],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983522,0.00068566634,0.0006453016,0.000068009904,0.00004957625,0.00019922276],"domain_scores_gemma":[0.99732035,0.00043981662,0.0015951402,0.00042930865,0.00020650872,0.000008872752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014070326,0.000112849804,0.00032125658,0.00009190004,0.0005825843,0.000014027168,0.0005966848,0.00017634052,0.00001655372],"category_scores_gemma":[0.00032273724,0.00006366854,0.00009686357,0.000044242883,0.0011998536,0.00018048858,0.00008906202,0.00039391054,0.000007972264],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002147091,0.000038327427,0.000051387786,0.000010586705,0.00024581837,0.0000024142896,0.00070530834,0.0000053700173,0.9878703,0.0009974441,0.0001425922,0.0077834013],"study_design_scores_gemma":[0.0009803085,0.000760999,0.03546742,0.00007967205,0.00010839051,0.00023976184,0.0007296655,0.000004040535,0.9541601,0.00045930428,0.0069429628,0.00006740851],"about_ca_topic_score_codex":0.00007338227,"about_ca_topic_score_gemma":0.000009803204,"teacher_disagreement_score":0.041704368,"about_ca_system_score_codex":0.000015117762,"about_ca_system_score_gemma":0.00009378978,"threshold_uncertainty_score":0.4480826},"labels":[],"label_agreement":null},{"id":"W4313356427","doi":"10.4049/jimmunol.196.supp.202.20","title":"Glucocorticoids enhance neutrophil survival via G-CSF","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Glucocorticoid; Proinflammatory cytokine; Inflammation; Glucocorticoid receptor; Immunology; Medicine; Biology","score_opus":0.00736829759050908,"score_gpt":0.22904382960879388,"score_spread":0.2216755320182848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356427","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9775624,0.008978128,0.004988327,0.005429045,0.00247369,0.00009486588,0.0000014285498,0.000021309643,0.00045076106],"genre_scores_gemma":[0.9948507,0.0024414898,0.00002359013,0.000119850985,0.00010808939,0.0000024127191,0.0000013803719,0.000015169882,0.0024373021],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978463,0.0009737444,0.00067856075,0.000093184404,0.000052944277,0.00035525172],"domain_scores_gemma":[0.9980535,0.0006653567,0.00061729527,0.00037893635,0.00027182788,0.000013083877],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001092152,0.00015730567,0.00035179936,0.00014422719,0.00017401249,0.0000067895676,0.00057364366,0.00020915378,0.0006989165],"category_scores_gemma":[0.00028872854,0.000076009135,0.00014430391,0.00011781814,0.00047494672,0.00023604416,0.00009936724,0.0003760233,0.0009783807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018078743,0.000045922465,0.000112098256,0.000002027279,0.00032940807,0.000008077609,0.00022855467,0.0000013557622,0.94522554,0.00055134523,0.0006126763,0.051075093],"study_design_scores_gemma":[0.0018581772,0.0008906586,0.0156625,0.000052359712,0.00009041783,0.0016952135,0.00014871945,3.883944e-7,0.9320236,0.0010621285,0.04637796,0.00013787019],"about_ca_topic_score_codex":0.00002226872,"about_ca_topic_score_gemma":0.00000436227,"teacher_disagreement_score":0.050937224,"about_ca_system_score_codex":0.00006253577,"about_ca_system_score_gemma":0.00010641944,"threshold_uncertainty_score":0.9997995},"labels":[],"label_agreement":null},{"id":"W4313356436","doi":"10.4049/jimmunol.196.supp.203.8","title":"Comparison of the TLR7 and TLR9 innate immune signaling pathways in african green monkeys and rhesus macaques","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"TLR7; Innate immune system; Biology; TLR9; Immune system; Immunology; Acquired immune system; Pattern recognition receptor; Plasmacytoid dendritic cell; Dendritic cell; Toll-like receptor; Gene; Genetics; Gene expression","score_opus":0.017330772317997435,"score_gpt":0.24502766932689185,"score_spread":0.22769689700889442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356436","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97564393,0.021496486,0.000057269594,0.0023154046,0.0002550934,0.000116234565,0.0000028431514,0.000005524573,0.00010719857],"genre_scores_gemma":[0.99782324,0.001953696,0.000017537614,0.000026610474,0.000014481902,0.0000016569244,6.273186e-7,0.000009222476,0.00015295412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978486,0.0010249587,0.0007675939,0.00008355042,0.00004421711,0.00023112958],"domain_scores_gemma":[0.99820435,0.0006807441,0.0007653378,0.00022918901,0.00011181648,0.0000085830425],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009449415,0.00013679026,0.00044840857,0.00017895554,0.00013334965,0.0000055844253,0.00035814964,0.00017644667,0.000039435483],"category_scores_gemma":[0.000200038,0.00006349589,0.00006768867,0.00012965144,0.0006761323,0.00013058003,0.00018934181,0.000405934,0.000006486995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011888612,0.000039559873,0.0057399003,0.0000084741,0.00017932172,0.0000019180288,0.0038843246,0.0000023424811,0.96462125,0.00052501407,0.000023159371,0.023785902],"study_design_scores_gemma":[0.002042057,0.00058527046,0.1281566,0.00021633127,0.00006775918,0.00042285793,0.002370914,0.000004074922,0.86325514,0.0013933808,0.0013817686,0.00010385375],"about_ca_topic_score_codex":0.00022570882,"about_ca_topic_score_gemma":0.00002961315,"teacher_disagreement_score":0.122416705,"about_ca_system_score_codex":0.000033800447,"about_ca_system_score_gemma":0.000061054554,"threshold_uncertainty_score":0.25892872},"labels":[],"label_agreement":null},{"id":"W4313356511","doi":"10.4049/jimmunol.196.supp.216.8","title":"The role of IRF7 and NF-κB pathways in the induction of antiviral responses in chicken tracheal epithelial cells following exposure to TLR3 and 4 ligands","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"TLR3; IRF7; Immune system; Biology; Viral replication; Cell biology; Toll-like receptor; Chemistry; Virology; Innate immune system; Immunology; Virus","score_opus":0.008202392769133374,"score_gpt":0.21838155247349422,"score_spread":0.21017915970436085,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356511","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883858,0.00963414,0.000016776281,0.001468452,0.0002883043,0.00015644511,0.0000045641505,0.000002142154,0.00004337608],"genre_scores_gemma":[0.99801314,0.0018766172,0.000008339933,0.000024074463,0.000022807268,0.0000029547246,4.8970026e-7,0.0000064172095,0.0000451437],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977505,0.0012903818,0.0006231406,0.00007720077,0.00005166346,0.00020711252],"domain_scores_gemma":[0.9980707,0.0012892348,0.00038352894,0.00019398148,0.00005638023,0.000006129721],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0031662264,0.000109191176,0.0003035218,0.00021407544,0.00011904747,0.0000065390304,0.0002854504,0.000177246,0.0000038466264],"category_scores_gemma":[0.00032842343,0.000047642927,0.00006521208,0.00014396313,0.0003351949,0.00014057262,0.00006977861,0.00034658058,0.0000028004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045243013,0.00004064535,0.0016822683,0.0000030257304,0.00008758984,0.0000028891764,0.008348001,0.0000010958256,0.93828225,0.00031880607,0.000007850659,0.0467013],"study_design_scores_gemma":[0.001710144,0.0013212452,0.09957122,0.000085171174,0.000032569154,0.00022553277,0.006162458,5.905711e-7,0.88935935,0.0007949659,0.0006780426,0.000058702022],"about_ca_topic_score_codex":0.00006529008,"about_ca_topic_score_gemma":0.000043174947,"teacher_disagreement_score":0.097888954,"about_ca_system_score_codex":0.00001973665,"about_ca_system_score_gemma":0.00006981175,"threshold_uncertainty_score":0.1942822},"labels":[],"label_agreement":null},{"id":"W4313356512","doi":"10.4049/jimmunol.196.supp.54.11","title":"IL-17A is rapidly triggered by staphylococcal superantigens and is pathogenic in toxic shock syndrome","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; University of British Columbia; Western University","funders":"","keywords":"Superantigen; Toxic shock syndrome; Immunology; Pathogenesis; Peripheral blood mononuclear cell; Cytokine; Chemokine; Biology; Staphylococcus aureus; Inflammation; Immune system; T cell; In vitro","score_opus":0.00709479621970544,"score_gpt":0.21251639599860195,"score_spread":0.2054215997788965,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356512","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96047056,0.033380233,0.00009397432,0.0053977426,0.0004232885,0.00015922003,0.00003340757,0.00001001191,0.000031593045],"genre_scores_gemma":[0.98891056,0.009002554,0.000011653459,0.0003182259,0.000016306458,0.000003451141,0.0000037304467,0.000017108747,0.0017164218],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976516,0.00092537445,0.0007942737,0.00014954712,0.000052882486,0.00042637278],"domain_scores_gemma":[0.9987077,0.0004905847,0.00036124344,0.0003131997,0.00010800867,0.000019225756],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011410946,0.00020529648,0.0005357059,0.0002822346,0.00013504505,0.000010406509,0.00039530385,0.00034693425,0.0010577746],"category_scores_gemma":[0.000117307674,0.000113636226,0.00013805642,0.00015891054,0.00041383013,0.0002176112,0.000092546834,0.00045666363,0.0002532597],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016449748,0.000067640714,0.0004469532,0.000004956441,0.00039207202,0.000027578968,0.001928054,1.2328817e-7,0.9783684,0.0000414254,0.003811472,0.013266355],"study_design_scores_gemma":[0.008521609,0.002280435,0.0621209,0.0001880336,0.00015987571,0.010072722,0.0010913543,0.0000013511072,0.8602757,0.00078887417,0.05413505,0.00036413415],"about_ca_topic_score_codex":0.000042609936,"about_ca_topic_score_gemma":0.0000058374694,"teacher_disagreement_score":0.11809273,"about_ca_system_score_codex":0.00005791889,"about_ca_system_score_gemma":0.0001148551,"threshold_uncertainty_score":0.9998554},"labels":[],"label_agreement":null},{"id":"W4313356676","doi":"10.4049/jimmunol.194.supp.52.17","title":"Staphylococcal superantigens trigger rapid human IL-17A production by a novel population of memory T cells (HUM1P.268)","year":2015,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Superantigen; Toxic shock syndrome; Peripheral blood mononuclear cell; Immunology; Cytokine; Staphylococcus aureus; Pathogenesis; Biology; Population; Enterotoxin; Inflammation; Systemic inflammatory response syndrome; In vitro; Microbiology; Medicine; Sepsis; T cell; Immune system; Bacteria; Gene; Escherichia coli","score_opus":0.019092989510807266,"score_gpt":0.24030879345170938,"score_spread":0.22121580394090212,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313356676","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9890056,0.0077988645,0.00023903856,0.0007475593,0.0017897517,0.00024685453,0.000010185698,0.000016731945,0.00014540048],"genre_scores_gemma":[0.9979275,0.0003506241,0.00003990992,0.0000372072,0.00009999534,0.000002935891,0.000047110534,0.000019534182,0.0014752119],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99760973,0.0008954675,0.0009770412,0.00012785528,0.00009451786,0.00029539454],"domain_scores_gemma":[0.9981122,0.00013883047,0.00089136226,0.00035936758,0.0004786124,0.000019612015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002088349,0.00018821239,0.0005032563,0.00028293615,0.0001860113,0.0000080212785,0.00037453265,0.00029304292,0.00016892941],"category_scores_gemma":[0.00021027241,0.0001302409,0.0001572005,0.00018861954,0.00034752762,0.00026645805,0.00006253136,0.0005508758,0.000063900305],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019923646,0.00021848087,0.00008886955,0.00000992629,0.00038708225,0.0000014073541,0.0024506622,0.00005693509,0.98728925,0.00009583335,0.004859556,0.0025496215],"study_design_scores_gemma":[0.002725948,0.0011969017,0.0058873924,0.00004124971,0.0001375201,0.0005915888,0.0012823822,0.0000026053779,0.9734483,0.00012890733,0.014411449,0.00014580654],"about_ca_topic_score_codex":0.0002129994,"about_ca_topic_score_gemma":0.0000080504,"teacher_disagreement_score":0.0138410125,"about_ca_system_score_codex":0.0001058055,"about_ca_system_score_gemma":0.00016922643,"threshold_uncertainty_score":0.53110695},"labels":[],"label_agreement":null},{"id":"W4313360721","doi":"10.3390/ijms24010641","title":"Acute Inflammation in Tissue Healing","year":2022,"lang":"en","type":"review","venue":"International Journal of Molecular Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":226,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Inflammation; Tissue repair; Wound healing; Collateral damage; Innate immune system; Immune system; Biology; Immunology; Medicine; Bioinformatics; Cell biology; Psychology","score_opus":0.03145470652903157,"score_gpt":0.35648335855217916,"score_spread":0.32502865202314757,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313360721","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0012906926,0.9952203,0.0002399944,0.00019475943,0.0023398038,0.00013414392,0.000005429346,0.0000057399693,0.0005691053],"genre_scores_gemma":[0.00056331686,0.99897325,0.00015335226,0.00003117303,0.00006983007,0.000009921432,0.00004918431,0.000009402163,0.0001405525],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99800074,0.0005054313,0.0009373389,0.00015409174,0.00024058415,0.0001618293],"domain_scores_gemma":[0.9985628,0.0001885115,0.0010414551,0.00009027283,0.00010571249,0.000011212138],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013837084,0.00015504572,0.0005346712,0.001047564,0.00008213364,0.00005961802,0.0010496522,0.0001405357,0.0006220678],"category_scores_gemma":[0.00017527334,0.00012534848,0.00024353898,0.00031885694,0.000112694404,0.00026447568,0.00014090577,0.00048258278,0.000078820136],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000028777307,0.000020939053,0.0000010533516,0.000068913585,0.0002554501,0.00025914985,0.0001302778,0.0000726866,0.00470212,0.0004850588,0.000076419965,0.99389917],"study_design_scores_gemma":[0.0002582103,0.00013823633,0.0000015640209,0.001146163,0.00009279897,0.0014453329,0.000055390658,0.000002027862,0.005051617,0.0001309932,0.99155945,0.00011823933],"about_ca_topic_score_codex":0.000012588133,"about_ca_topic_score_gemma":0.0000019033487,"teacher_disagreement_score":0.9937809,"about_ca_system_score_codex":0.00019577773,"about_ca_system_score_gemma":0.0005742647,"threshold_uncertainty_score":0.6811206},"labels":[],"label_agreement":null},{"id":"W4313366220","doi":"10.4049/jimmunol.202.supp.191.18","title":"Short- and long-term impact of prebiotic supplementation during infancy on immune activity in Wistar rats","year":2019,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada; Health Canada; University of Alberta; Ontario Tech University","funders":"","keywords":"Internal medicine; Endocrinology; Spleen; Immune system; Weaning; Fructooligosaccharide; Lipopolysaccharide; TLR2; Biology; Prebiotic; Stimulation; TLR4; Immunology; Medicine; Biochemistry","score_opus":0.008466228568358686,"score_gpt":0.27135909421852944,"score_spread":0.2628928656501708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313366220","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9955345,0.003745573,0.000009194407,0.00012558079,0.00029182356,0.00024860667,0.0000033630988,0.0000043351197,0.000037059322],"genre_scores_gemma":[0.99866265,0.0011700268,0.0000032069931,0.0000065971467,0.000010621409,0.0000013282323,0.0000087573235,0.000009743483,0.00012703866],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984725,0.00061770616,0.0005537741,0.000085017076,0.000042124804,0.00022888338],"domain_scores_gemma":[0.9989456,0.00026340914,0.00046471294,0.00024117515,0.00007755669,0.0000075441776],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006664734,0.00014156272,0.00038571298,0.00029488484,0.000059684913,0.0000060647612,0.00020412143,0.00015094176,0.00028491262],"category_scores_gemma":[0.000055473218,0.000094121184,0.00010903431,0.00011507968,0.00014857601,0.00023342707,0.00006810099,0.00046139112,0.00002893445],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006657125,0.00010364888,0.07373752,0.000024921006,0.00035093186,0.000004442388,0.0009114609,0.00006180806,0.91507566,0.000026217309,0.0000055231167,0.0030407466],"study_design_scores_gemma":[0.0013439949,0.00090543006,0.5873251,0.00008400564,0.000025754784,0.00021423989,0.00008569296,0.0000012401208,0.40994507,0.000014038839,0.0000040606906,0.00005139682],"about_ca_topic_score_codex":0.00005842509,"about_ca_topic_score_gemma":0.000010382478,"teacher_disagreement_score":0.51358753,"about_ca_system_score_codex":0.00008482412,"about_ca_system_score_gemma":0.00007245278,"threshold_uncertainty_score":0.38381505},"labels":[],"label_agreement":null},{"id":"W4313373159","doi":"10.4049/jimmunol.204.supp.149.6","title":"CD169+ macrophages subsets are critical for regulating inflammation during sepsis","year":2020,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Sepsis; Septic shock; Macrophage; Inflammation; Biology; Mediator; Immunology; Immune system; Receptor; Lipopolysaccharide; Innate immune system; Signal transduction; Cell biology","score_opus":0.016892480214584404,"score_gpt":0.25856099571594776,"score_spread":0.24166851550136337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313373159","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97727555,0.006057767,0.0016334587,0.014249686,0.00054476387,0.00016612228,0.0000044684116,0.000025977371,0.000042214233],"genre_scores_gemma":[0.9990869,0.0002115423,0.00017549613,0.0001632297,0.00019366753,0.000005267343,0.000007433856,0.000017468978,0.0001389739],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983562,0.0005390994,0.00067196623,0.000095576965,0.000045068307,0.00029205935],"domain_scores_gemma":[0.9981336,0.0007849412,0.00059104786,0.00016716588,0.00030607727,0.000017183958],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062569365,0.0001418849,0.00033863095,0.00010045797,0.00034648963,0.000016918433,0.0003326849,0.00020288401,0.00016947236],"category_scores_gemma":[0.0016669945,0.00010011903,0.00015152717,0.000118333555,0.00022649384,0.00023767886,0.000076892495,0.0004208185,0.000101018486],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027320064,0.000014953214,0.00014175352,0.00004520494,0.0002596405,0.000005881879,0.0018204937,0.00005742067,0.99127465,0.00042412442,0.00048714312,0.00273675],"study_design_scores_gemma":[0.0020530107,0.00048800043,0.017978894,0.0000847792,0.000147002,0.00068455597,0.0018854435,0.000040026414,0.97187895,0.00039078743,0.004230735,0.00013782603],"about_ca_topic_score_codex":0.0000037317736,"about_ca_topic_score_gemma":0.0000011710199,"teacher_disagreement_score":0.02181138,"about_ca_system_score_codex":0.000040009618,"about_ca_system_score_gemma":0.000052926323,"threshold_uncertainty_score":0.40827358},"labels":[],"label_agreement":null},{"id":"W4313373236","doi":"10.4049/jimmunol.204.supp.148.47","title":"CONTRIBUTIONS OF FEVER TO THE PROMOTION OF CELLULAR ANTIMICROBIAL DEFENSES","year":2020,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"","keywords":"Immune system; Biology; Pathogen; Immunology; In vivo; Function (biology); Phenotype; Cell biology; Ex vivo; Gene; Genetics","score_opus":0.012827732421316507,"score_gpt":0.2284463862606499,"score_spread":0.21561865383933337,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313373236","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9750674,0.0033470658,0.004044338,0.016817577,0.00045199617,0.00020149873,0.00001619124,0.0000056060485,0.00004835736],"genre_scores_gemma":[0.9992955,0.0002693962,0.000030237103,0.00026223346,0.00004450224,0.0000011417795,0.000007558552,0.000006394947,0.00008304043],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998323,0.0007842935,0.00063226704,0.000055109624,0.00003973681,0.00016554561],"domain_scores_gemma":[0.9984873,0.0002550956,0.00064640085,0.00019402061,0.00040737574,0.000009818491],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007691454,0.000092655944,0.00031888438,0.000082553095,0.00011850189,0.0000030323529,0.00042438874,0.0001291732,0.00014293383],"category_scores_gemma":[0.00052355515,0.00005121671,0.00013675445,0.00019267076,0.0002812384,0.00007020108,0.00009075293,0.00032521368,0.0000844441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013629579,0.00006383775,0.000042457617,0.0000091618995,0.00034934044,0.0000013062344,0.0020863307,0.00007350051,0.9911909,0.00055495853,0.0033434567,0.00092175364],"study_design_scores_gemma":[0.0008757961,0.0008749724,0.0020518785,0.0000373771,0.00013071955,0.00020212392,0.00042867372,0.0000025541226,0.9805238,0.000052121264,0.014770427,0.00004952297],"about_ca_topic_score_codex":0.000023849378,"about_ca_topic_score_gemma":0.0000016529694,"teacher_disagreement_score":0.024228126,"about_ca_system_score_codex":0.000018454462,"about_ca_system_score_gemma":0.000112125635,"threshold_uncertainty_score":0.20885569},"labels":[],"label_agreement":null},{"id":"W4313380595","doi":"10.4049/jimmunol.196.supp.55.27","title":"Role of GITR and its ligand in sustaining T cell responses against influenza infection","year":2016,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Social Innovation; University of Toronto","funders":"","keywords":"Immunology; CD8; T cell; Cytotoxic T cell; Influenza A virus; Lung; Biology; Antigen; Immune system; Virus; Medicine; In vitro; Internal medicine","score_opus":0.009127435073534518,"score_gpt":0.23593104843716,"score_spread":0.22680361336362548,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313380595","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9768896,0.022284761,0.000017493066,0.00032923615,0.000176034,0.000085054264,0.0000013412168,0.000005746884,0.00021074378],"genre_scores_gemma":[0.994877,0.0047574686,0.0000049941323,0.000047378675,0.000015526024,0.0000014493086,5.257501e-7,0.000008126668,0.00028752346],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983098,0.0008082341,0.00058125646,0.000065249,0.000029606232,0.00020585825],"domain_scores_gemma":[0.99836195,0.00075959275,0.00055417506,0.00013754066,0.00017915134,0.0000076122838],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0012991973,0.00010507775,0.00027578778,0.00036509568,0.000077297365,0.0000039789716,0.00015672143,0.000191607,0.000028157905],"category_scores_gemma":[0.00042860923,0.000059267073,0.000052527794,0.00012541068,0.00019285789,0.00021933,0.00007765205,0.000275778,0.000024543946],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036792485,0.000038084934,0.003658754,0.000007898587,0.00008945647,0.0000026293471,0.0015246347,0.000007348567,0.97919244,0.00017661686,0.000022858758,0.011600015],"study_design_scores_gemma":[0.002194912,0.0005995212,0.08568238,0.000114052236,0.000027979037,0.00024969215,0.0010462648,0.0000011942809,0.90489346,0.00024843664,0.004871231,0.00007089505],"about_ca_topic_score_codex":0.000028075114,"about_ca_topic_score_gemma":0.000007737976,"teacher_disagreement_score":0.08202362,"about_ca_system_score_codex":0.00004292886,"about_ca_system_score_gemma":0.000112739195,"threshold_uncertainty_score":0.24168411},"labels":[],"label_agreement":null},{"id":"W4313380776","doi":"10.4049/jimmunol.188.supp.172.33","title":"Cross-talk of Nod1 and Nod2 signaling pathways with IFNγ (172.33)","year":2012,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"NOD1; NOD2; CXCR3; Chemokine; Innate immune system; Biology; Cell biology; Immune system; CD80; Immunology; Chemistry; CD40; Cytotoxic T cell; In vitro; Chemokine receptor; Biochemistry","score_opus":0.012059796372912643,"score_gpt":0.22940646810787674,"score_spread":0.21734667173496408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313380776","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9727193,0.026063792,0.00025338668,0.00017843202,0.0004575443,0.000081038896,0.000002963248,0.00000837064,0.00023516039],"genre_scores_gemma":[0.9988744,0.0006784059,0.00008272863,0.000050222232,0.000053706146,0.0000012828195,0.0000032310081,0.000013430756,0.00024258658],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985571,0.00047259388,0.0005423062,0.00006059543,0.000046218916,0.0003212218],"domain_scores_gemma":[0.9985099,0.00034925246,0.00069900596,0.00021640831,0.00021013751,0.000015302592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013344613,0.00014102782,0.00035445057,0.00014743504,0.0001684701,0.0000082139195,0.0002603635,0.00019388217,0.00020887148],"category_scores_gemma":[0.0001256105,0.000081565806,0.00007109862,0.000101456135,0.0005899712,0.00029083926,0.000077160825,0.0004484561,0.00003867341],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.002491103,0.00007043652,0.0028422587,0.000012750154,0.00044996841,0.0000031403058,0.0024532836,0.000010602699,0.98790807,0.00044523025,0.00003909863,0.0032740664],"study_design_scores_gemma":[0.0018479213,0.0008804653,0.040221658,0.00008575945,0.00013079883,0.0036221324,0.0011819671,8.864958e-7,0.94673294,0.00007747894,0.0051039024,0.00011407736],"about_ca_topic_score_codex":0.000030237288,"about_ca_topic_score_gemma":0.0000015213835,"teacher_disagreement_score":0.04117511,"about_ca_system_score_codex":0.000022988488,"about_ca_system_score_gemma":0.000073624826,"threshold_uncertainty_score":0.3326157},"labels":[],"label_agreement":null},{"id":"W4313381335","doi":"10.4049/jimmunol.202.supp.140.7","title":"The role of mTOR, TRAF1, and local antigen in 4-1BB-dependent establishment of Trm in the lung","year":2019,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Population; Immunology; CD8; Biology; PI3K/AKT/mTOR pathway; Cancer research; Antigen; Medicine; Cell biology; Signal transduction","score_opus":0.0036001465279061253,"score_gpt":0.20960518625090305,"score_spread":0.2060050397229969,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313381335","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95502925,0.043350607,0.00001905298,0.0008008949,0.0002673929,0.00020179371,0.0000012095712,0.0000013839726,0.00032842363],"genre_scores_gemma":[0.99494684,0.004899487,0.0000036091747,0.000029526745,0.000008006025,0.0000020926493,0.0000013705067,0.000005313304,0.000103745],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977733,0.0011767137,0.0007096618,0.00006229247,0.00006284128,0.00021517785],"domain_scores_gemma":[0.9983392,0.0007966289,0.0005136164,0.0002679939,0.00007844416,0.0000041182893],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026709132,0.00009940389,0.00031492318,0.00015647119,0.000062813335,0.000006224525,0.0005127346,0.00014603332,0.000049360577],"category_scores_gemma":[0.00008344785,0.000047814658,0.000065031614,0.00012926175,0.000374357,0.000106400075,0.00007868792,0.0005051303,0.000009986589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003520609,0.00014519117,0.00758657,0.000012877251,0.00026760486,0.000003990079,0.009468654,0.00015276746,0.95419115,0.0018278388,0.00009565019,0.022727098],"study_design_scores_gemma":[0.0057081906,0.0018509931,0.4059451,0.00020260434,0.00009490032,0.0011930394,0.04606349,0.00007908516,0.5242887,0.0015855381,0.012815053,0.00017330862],"about_ca_topic_score_codex":0.00021608079,"about_ca_topic_score_gemma":0.00005806432,"teacher_disagreement_score":0.42990243,"about_ca_system_score_codex":0.000037951195,"about_ca_system_score_gemma":0.000090179776,"threshold_uncertainty_score":0.21945676},"labels":[],"label_agreement":null},{"id":"W4313381855","doi":"10.4049/jimmunol.200.supp.175.6","title":"Apoptotic cell induced, TLR9-dependent AhR activity is a critical driver of tolerance induction and suppression of lupus","year":2018,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Krembil Foundation; York University; Princess Margaret Cancer Centre","funders":"","keywords":"Aryl hydrocarbon receptor; TLR9; Inflammation; Immunology; Biology; Acquired immune system; Cytokine; Apoptosis; Innate immune system; Cell biology; Immune system; Autoimmunity; Systemic lupus erythematosus; Cancer research; Transcription factor; Disease; Medicine; Internal medicine; DNA methylation; Gene expression; Gene","score_opus":0.012753461112769447,"score_gpt":0.25707248548520023,"score_spread":0.24431902437243078,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313381855","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947422,0.0028002216,0.00026025463,0.0005962929,0.0013356954,0.00009313452,0.0000029212772,0.000004444335,0.00016481093],"genre_scores_gemma":[0.99907076,0.00059335993,0.00003879829,0.00003354462,0.000049541664,8.800104e-7,8.0946813e-7,0.000008205601,0.00020408341],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99841845,0.0007126705,0.0005102621,0.000095101954,0.00006415775,0.00019934554],"domain_scores_gemma":[0.99841255,0.00035590382,0.00059714133,0.00024788233,0.0003749275,0.000011601227],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006872491,0.00012424236,0.0003762539,0.00017141842,0.0001268694,0.0000040386603,0.00023948688,0.0002867466,0.00023578461],"category_scores_gemma":[0.00016706498,0.000083566796,0.000076655575,0.00009851317,0.0007646965,0.00022672562,0.00011298328,0.00048681744,0.000025065645],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031104547,0.00013629794,0.00024517905,0.000024995868,0.0001289564,0.0000012295475,0.002492049,9.694077e-7,0.9874865,0.000090928326,0.00023021374,0.006052252],"study_design_scores_gemma":[0.0013038849,0.0015896434,0.015021674,0.00008982435,0.00010207407,0.00082718924,0.00071230135,0.000006171227,0.9796147,0.0002189648,0.00043985632,0.000073755626],"about_ca_topic_score_codex":0.00006367451,"about_ca_topic_score_gemma":0.0000026556295,"teacher_disagreement_score":0.014776495,"about_ca_system_score_codex":0.000027624781,"about_ca_system_score_gemma":0.00008259484,"threshold_uncertainty_score":0.34077552},"labels":[],"label_agreement":null},{"id":"W4313383148","doi":"10.4049/jimmunol.202.supp.74.9","title":"Differential effect of GITR on lung effector T cell subpopulations during influenza infection","year":2019,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"CD8; CXCR3; Immunology; T cell; CX3CR1; Cytotoxic T cell; Adoptive cell transfer; Biology; Effector; Chemokine; Memory T cell; Interleukin 21; Natural killer T cell; Chemokine receptor; Cell biology; Immune system; In vitro","score_opus":0.004315479881231847,"score_gpt":0.22884150209974863,"score_spread":0.22452602221851678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313383148","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9961939,0.0015452945,0.000045315268,0.000047099773,0.0016678215,0.0002812019,0.0000025127847,0.000014613906,0.00020225257],"genre_scores_gemma":[0.9993829,0.00017374053,0.0000017804057,0.000013575105,0.000042750824,0.000002941655,0.0000068970107,0.000014401696,0.00036099178],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99778545,0.0012800123,0.0005753031,0.00008223943,0.00005575729,0.00022123047],"domain_scores_gemma":[0.99813163,0.0007352365,0.000723054,0.00029356524,0.0001080626,0.000008425723],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004554641,0.00016461762,0.00042510842,0.0003110413,0.00013602142,0.0000064643073,0.0002264401,0.0002303558,0.0005774464],"category_scores_gemma":[0.00013367759,0.00010194822,0.00020013883,0.00013404245,0.00011135062,0.00013970317,0.000061247694,0.0005656097,0.00033805138],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005487927,0.000061355735,0.02058857,0.00006212106,0.0003341647,0.0000010120403,0.0003331078,0.00019797984,0.97208196,0.000042396965,0.000053765274,0.00075563043],"study_design_scores_gemma":[0.0027959922,0.0017162017,0.26997092,0.00007508273,0.000106030115,0.00013520023,0.000014462325,0.000006105387,0.72471124,0.00000808317,0.0003891859,0.00007150524],"about_ca_topic_score_codex":0.00004742578,"about_ca_topic_score_gemma":0.0000018479785,"teacher_disagreement_score":0.24938236,"about_ca_system_score_codex":0.00006811005,"about_ca_system_score_gemma":0.00003472116,"threshold_uncertainty_score":0.63226336},"labels":[],"label_agreement":null},{"id":"W4313405647","doi":"10.4049/jimmunol.208.supp.47.04","title":"Characterization of a <i>CLCF1</i> conditional knock-out mice model","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Hôpital Maisonneuve-Rosemont; Université de Montréal","funders":"","keywords":"Gene knockin; Conditional gene knockout; Knockout mouse; In vivo; Biology; Immune system; Haematopoiesis; Cell biology; Cytokine; Gene targeting; CRISPR; Immunology; Neuroscience; Cancer research; Phenotype; Stem cell; Gene; Genetics","score_opus":0.010311537761361128,"score_gpt":0.21849686484498426,"score_spread":0.20818532708362314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313405647","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99278873,0.0019008733,0.003059343,0.0011360233,0.0007363721,0.000105226296,0.000036227502,0.00000828137,0.00022890924],"genre_scores_gemma":[0.99776065,0.00029416804,0.00002474641,0.00023267629,0.000025080724,0.0000064069654,0.000108098466,0.000010177208,0.0015379676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99829036,0.00080562517,0.00060658454,0.000061238155,0.000066428795,0.00016978633],"domain_scores_gemma":[0.998552,0.00018838077,0.00088296726,0.00017449756,0.00019620704,0.0000059291283],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009109342,0.000098209304,0.00026602816,0.00018448864,0.00027497287,0.0000030864717,0.0004152819,0.0000865991,0.0007168995],"category_scores_gemma":[0.000065373584,0.00007379083,0.00011235731,0.00010916188,0.00020942141,0.00013856497,0.00014008833,0.00050533796,0.000046946807],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018878186,0.000097267424,0.000023650518,0.0000040217583,0.0002785091,0.0000018969573,0.0015186212,0.00063362956,0.9928833,0.0013076967,0.0006486273,0.00071495346],"study_design_scores_gemma":[0.002083019,0.0009022284,0.0024489416,0.000016433307,0.00013799018,0.0018926316,0.0010828176,0.00015700904,0.96687704,0.0011866082,0.023087917,0.00012734947],"about_ca_topic_score_codex":0.000008538086,"about_ca_topic_score_gemma":8.5254044e-7,"teacher_disagreement_score":0.026006252,"about_ca_system_score_codex":0.00005696111,"about_ca_system_score_gemma":0.00019294203,"threshold_uncertainty_score":0.78495467},"labels":[],"label_agreement":null},{"id":"W4313422208","doi":"10.4049/jimmunol.208.supp.50.15","title":"Lactic acid bacteria derived-bioactive molecules condition an <i>in vitro</i> cell model into a tolerogenic dendritic-like cell phenotype","year":2022,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Agriculture and Agri-Food Canada; Ontario Tech University","funders":"","keywords":"CD80; CD86; Cell biology; Proinflammatory cytokine; Antigen presentation; Biology; Dendritic cell; CD40; Immune system; T cell; Antigen-presenting cell; Chemistry; Immunology; In vitro; Biochemistry; Inflammation; Cytotoxic T cell","score_opus":0.007165782089123916,"score_gpt":0.21943675054347328,"score_spread":0.21227096845434937,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313422208","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9839787,0.013340906,0.000924097,0.0003649864,0.0009911638,0.00018437748,0.000014044306,0.000017886652,0.00018382065],"genre_scores_gemma":[0.9986509,0.0003929838,0.00026505286,0.000348294,0.000028848537,0.000019714871,0.00008083138,0.000027902965,0.00018544593],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.996678,0.0020229141,0.0006601703,0.00016645613,0.00007725841,0.00039521823],"domain_scores_gemma":[0.9986336,0.00020267071,0.0006498575,0.0003488833,0.00014458544,0.00002038235],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008681562,0.00021781064,0.00040904543,0.00030269087,0.00042196555,0.000015780119,0.00060991506,0.00018157496,0.00040735703],"category_scores_gemma":[0.00003629898,0.00018142982,0.00013961497,0.00018531046,0.00023526794,0.0003468139,0.00020260915,0.0010345827,0.00009221153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.006764922,0.00032803358,0.0000054521643,0.00000944688,0.00015344893,0.000022485974,0.004066725,0.000669649,0.98661554,0.000068746995,0.00014560952,0.0011499281],"study_design_scores_gemma":[0.0025835196,0.0010845489,0.00032884683,0.000009050928,0.000140574,0.00078392925,0.004590928,0.00024153937,0.98834753,0.0006018861,0.0010964649,0.00019115311],"about_ca_topic_score_codex":0.00006988586,"about_ca_topic_score_gemma":0.000012209732,"teacher_disagreement_score":0.014672209,"about_ca_system_score_codex":0.00024381804,"about_ca_system_score_gemma":0.00028173308,"threshold_uncertainty_score":0.7398493},"labels":[],"label_agreement":null},{"id":"W4313594688","doi":"10.1016/j.anndiagpath.2022.152102","title":"The differential expression of toll like receptors and RIG-1 correlates to the severity of infectious diseases","year":2023,"lang":"en","type":"article","venue":"Annals of Diagnostic Pathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Oncolytics Biotech (Canada)","funders":"","keywords":"Molluscum contagiosum; Immunohistochemistry; Innate immune system; Biology; Receptor; Immunology; Toll-like receptor; TLR2; Immune system; Infectious disease (medical specialty); In utero; Disease; Pathology; Virology; Medicine; Fetus; Pregnancy","score_opus":0.01338652978251748,"score_gpt":0.2636379875357057,"score_spread":0.25025145775318824,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313594688","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9951377,0.0026134672,0.000043824144,0.0009291048,0.00095554243,0.00022240222,0.000036677957,0.000021326457,0.000039988925],"genre_scores_gemma":[0.996385,0.0032650235,0.000001632141,0.00006516438,0.000014424854,0.00003245373,0.000041431646,0.0000063442794,0.0001885744],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99881005,0.000489301,0.00034126846,0.00012951366,0.000036925307,0.0001929248],"domain_scores_gemma":[0.99514586,0.0042757518,0.00020526805,0.00025169898,0.00010679876,0.000014603424],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00031573913,0.000097984506,0.0002544909,0.000091583606,0.00014637562,0.0000034650707,0.00016244693,0.00013272699,0.000053279717],"category_scores_gemma":[0.0032400768,0.000057633257,0.000075307726,0.00015110912,0.0003719045,0.000037670634,0.00017081102,0.000107941625,0.000041354644],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0016359434,0.00042928293,0.16884948,0.0001601205,0.00030124356,0.000020650781,0.0065075587,0.00009974827,0.6687081,0.0016066234,0.058933355,0.09274793],"study_design_scores_gemma":[0.00052890077,0.00060978305,0.5582045,0.00012034237,0.00005854296,0.000033548185,0.00043341322,0.000005948348,0.4329102,0.00095794006,0.0060365302,0.00010037962],"about_ca_topic_score_codex":0.000027719194,"about_ca_topic_score_gemma":0.000012543106,"teacher_disagreement_score":0.38935497,"about_ca_system_score_codex":0.000002286577,"about_ca_system_score_gemma":0.000025409667,"threshold_uncertainty_score":0.38789085},"labels":[],"label_agreement":null},{"id":"W4313596897","doi":"10.21203/rs.3.rs-2406649/v1","title":"TNF-α and Poly(I:C) induction of A20 and activation of NF-κB signaling are independent of ABCF1 in human airway epithelial cells","year":2023,"lang":"en","type":"preprint","venue":"Research Square","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"Canadian Institutes of Health Research","keywords":"Proinflammatory cytokine; Gene silencing; Transcription factor; Cell biology; Tumor necrosis factor alpha; NF-κB; Innate immune system; Biology; Signal transduction; NFKB1; Interferon regulatory factors; Inflammation; Chemistry; Immune system; Immunology; Biochemistry; Gene","score_opus":0.059360219613980816,"score_gpt":0.3471472794178337,"score_spread":0.2877870598038529,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313596897","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99779135,0.0011010119,0.00006240796,0.000121454264,0.00015042412,0.00063225435,0.00007840804,0.000013973394,0.00004870025],"genre_scores_gemma":[0.998764,0.00063910306,0.00001869981,0.0000013313621,0.000030991323,0.00003581003,0.0001783531,0.000021260668,0.00031049096],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975746,0.00093921646,0.00066828576,0.00034425754,0.00019506265,0.00027854159],"domain_scores_gemma":[0.9983752,0.00039999795,0.00047925688,0.00031089553,0.00041682107,0.0000178592],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0020971848,0.00016484354,0.00049237855,0.0011419246,0.000098508084,0.000012286627,0.00017481706,0.00069087895,0.00006086007],"category_scores_gemma":[0.00031214353,0.00016239534,0.00006885691,0.0002901636,0.00035003142,0.00010308003,0.0005192682,0.0010555139,0.00000578231],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000547874,0.00009445306,0.0033986955,0.001432326,0.00009530644,0.0000018823362,0.0021460608,0.000084306674,0.9879693,0.00021362069,0.00003679355,0.0039793756],"study_design_scores_gemma":[0.0008140131,0.0002881565,0.05585688,0.0014213127,0.0000126355435,0.0000019265722,0.0024298318,0.000011890828,0.93821895,0.0007792615,0.000053649597,0.00011147208],"about_ca_topic_score_codex":0.0017682473,"about_ca_topic_score_gemma":0.00007636383,"teacher_disagreement_score":0.052458186,"about_ca_system_score_codex":0.00007859151,"about_ca_system_score_gemma":0.00017544198,"threshold_uncertainty_score":0.662229},"labels":[],"label_agreement":null},{"id":"W4313706744","doi":"10.1126/sciimmunol.adf0244","title":"Evading the Toll booth: How “silent” flagellins may bind yet fail to activate TLR5","year":2023,"lang":"en","type":"letter","venue":"Science Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity; BC Children's Hospital","funders":"Crohn's and Colitis Canada","keywords":"TLR5; Flagellin; Biology; Toll-like receptor; Gut microbiome; Toll; Immune system; Function (biology); Receptor; Cell biology; Microbiome; Microbiology; Immunology; Innate immune system; Genetics","score_opus":0.027519807193900812,"score_gpt":0.26603186386249056,"score_spread":0.23851205666858974,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4313706744","genre_codex":"commentary","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16094479,0.0016727988,0.00009877421,0.8190001,0.014776955,0.0012201867,0.00005708062,0.0004028473,0.001826411],"genre_scores_gemma":[0.31960315,0.0018495257,0.00012772567,0.3093648,0.002197988,0.00077123224,0.0012025491,0.0003835046,0.3644995],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9951795,0.0008645802,0.0005942049,0.0011868699,0.00024723966,0.0019276177],"domain_scores_gemma":[0.9965654,0.0010228255,0.00046383648,0.0016655064,0.00024963837,0.00003280113],"candidate_categories":["metaepi_narrow","sts","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.0019653842,0.00062623306,0.0007368367,0.0013178219,0.0015827549,0.0002870718,0.0030224158,0.0016016442,0.0005238019],"category_scores_gemma":[0.00105703,0.00045462226,0.0002650374,0.001504016,0.0025742957,0.00050981855,0.00093178864,0.0032007901,0.013039462],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000092148344,0.000009606953,0.000012827507,0.000013933784,0.00015313551,0.000050341576,0.00088216586,0.000004809661,0.564836,0.00015606156,0.4294991,0.0042898683],"study_design_scores_gemma":[0.0003533106,0.00025182441,0.0006086773,0.00009948646,0.000048359103,0.00015006405,0.0005822662,0.0000035688795,0.2202479,0.00014118117,0.77706325,0.00045014924],"about_ca_topic_score_codex":0.00021187025,"about_ca_topic_score_gemma":0.000023946568,"teacher_disagreement_score":0.5096353,"about_ca_system_score_codex":0.00036468607,"about_ca_system_score_gemma":0.00070682453,"threshold_uncertainty_score":0.99979055},"labels":[],"label_agreement":null},{"id":"W4315780755","doi":"10.1136/jitc-2022-006136","title":"Phase Ib open-label, multicenter study of pixatimod, an activator of TLR9, in combination with nivolumab in subjects with microsatellite-stable metastatic colorectal cancer, metastatic pancreatic ductal adenocarcinoma and other solid tumors","year":2023,"lang":"en","type":"article","venue":"Journal for ImmunoTherapy of Cancer","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":39,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Royal Ottawa Mental Health Centre","funders":"","keywords":"Medicine; Nivolumab; Internal medicine; Oncology; Pharmacodynamics; Colorectal cancer; Response Evaluation Criteria in Solid Tumors; Cohort; Pancreatic cancer; Gastroenterology; Cancer; Phases of clinical research; Pharmacokinetics; Clinical trial; Immunotherapy","score_opus":0.03232948702170655,"score_gpt":0.3487401860462075,"score_spread":0.3164106990245009,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315780755","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99257356,0.005327567,0.00003930967,0.000043008677,0.00011894947,0.0018145236,0.000071887946,0.000007349657,0.000003862378],"genre_scores_gemma":[0.99857104,0.00070231175,0.00024638057,0.000019188583,0.000005794478,0.00026588683,0.00002276707,0.00004609927,0.000120543715],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99803424,0.00043452653,0.0008564376,0.00023042326,0.00011556384,0.00032879555],"domain_scores_gemma":[0.99840623,0.0002235705,0.0009501598,0.00017130298,0.00022717967,0.000021562531],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00075903896,0.00023478833,0.0008545719,0.00051537604,0.00010611126,0.000030140269,0.0002518916,0.000057427664,0.00008178996],"category_scores_gemma":[0.000029195784,0.0001765568,0.000037520127,0.00050179486,0.00018556704,0.00052872475,0.000028378598,0.0002228595,5.426902e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.047214862,0.0037394774,0.06381855,0.00018492053,0.0012385508,0.000013066331,0.014022,0.00026952414,0.86553705,0.0000132821715,0.000011821315,0.00393691],"study_design_scores_gemma":[0.113285355,0.021334935,0.10660805,0.00096457225,0.00029146834,0.00006329171,0.010859051,0.0006019982,0.7454869,0.00006736198,0.0000932937,0.00034368763],"about_ca_topic_score_codex":0.0042107804,"about_ca_topic_score_gemma":0.0024978383,"teacher_disagreement_score":0.120050095,"about_ca_system_score_codex":0.00012959362,"about_ca_system_score_gemma":0.00035042377,"threshold_uncertainty_score":0.71997774},"labels":[],"label_agreement":null},{"id":"W4315782479","doi":"10.3389/fmed.2022.1057252","title":"Inhibition of IL-12 heterodimers impairs TLR9-mediated prevention of early mouse plasmacytoma cell growth","year":2023,"lang":"en","type":"article","venue":"Frontiers in Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"Fonds De La Recherche Scientifique - FNRS","keywords":"Immunosurveillance; Innate immune system; TLR9; Biology; Immunology; Cytotoxic T cell; Innate lymphoid cell; TLR3; Interleukin 15; Cancer research; Cell biology; Immune system; Cytokine; Toll-like receptor; Interleukin; DNA methylation; In vitro","score_opus":0.00927609020025488,"score_gpt":0.2279860890460428,"score_spread":0.21870999884578793,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4315782479","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969456,0.0006172797,0.00058498426,0.00018411537,0.0009087844,0.0002937527,0.000016717886,0.0000581218,0.00039065286],"genre_scores_gemma":[0.9972668,0.0004945653,0.00012141345,0.000020130788,0.000021351429,0.000017107086,0.00052159,0.000015698624,0.0015212925],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9985941,0.00028811107,0.00060899416,0.000178112,0.00008317005,0.00024750587],"domain_scores_gemma":[0.99932855,0.00008986762,0.00030188123,0.00018483623,0.00007814888,0.000016707094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00068147446,0.00013631464,0.00044344115,0.00071837526,0.000036172998,0.0000013494678,0.00011164903,0.00022021071,0.00008498538],"category_scores_gemma":[0.00021859077,0.00012041376,0.00007206901,0.00048001888,0.0002860929,0.00012842215,0.000034857614,0.00020357031,0.000057277804],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011950135,0.000076631004,0.014439607,0.00014672354,0.00009012361,0.000006498769,0.0035214447,0.000013644934,0.95796216,0.00001735833,0.02082431,0.0017064727],"study_design_scores_gemma":[0.004914016,0.0012632713,0.036803436,0.00026251067,0.00005889528,0.0000041319217,0.0022978983,0.00007523639,0.9532241,0.00022326711,0.0007356399,0.00013759253],"about_ca_topic_score_codex":0.0001592541,"about_ca_topic_score_gemma":0.0000073027013,"teacher_disagreement_score":0.022363828,"about_ca_system_score_codex":0.000043816228,"about_ca_system_score_gemma":0.00004615746,"threshold_uncertainty_score":0.49103305},"labels":[],"label_agreement":null},{"id":"W4319074015","doi":"10.1016/j.archoralbio.2023.105641","title":"The role of granulocyte-macrophage colony-stimulating factor in head and neck cancer","year":2023,"lang":"en","type":"review","venue":"Archives of Oral Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Head and neck squamous-cell carcinoma; Medicine; Head and neck cancer; Cancer; Cytokine; Immune system; Granulocyte macrophage colony-stimulating factor; Adjuvant; Cancer research; Oncology; Immunology; Pathology; Internal medicine","score_opus":0.03509604777091328,"score_gpt":0.3433904212628365,"score_spread":0.3082943734919232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319074015","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.05184523,0.94717366,0.0000016905124,0.000020228204,0.00019745766,0.00044541765,0.00013526523,0.0000142445215,0.00016678132],"genre_scores_gemma":[0.017539343,0.9818723,0.000028845696,0.0000035678847,0.000010996556,0.00006288942,0.00016780251,0.00001880998,0.00029540667],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99799967,0.00072652695,0.0007226865,0.00023364599,0.000015045332,0.0003023992],"domain_scores_gemma":[0.9976083,0.0016822454,0.0004621836,0.00022042508,0.000016499103,0.000010330314],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018675528,0.0002209636,0.0011313213,0.0002109313,0.000092107824,0.0000036620195,0.00027055564,0.0003126303,0.000023371416],"category_scores_gemma":[0.0001833352,0.00014008675,0.00018617364,0.00014743202,0.00058041164,0.00002331386,0.00019924599,0.00034951395,0.000022097538],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001646378,0.000015375459,0.0014750975,0.00087693904,0.00022152136,0.000001059077,0.00024133839,0.0000010416773,0.014900432,0.00071256235,0.000006037891,0.981384],"study_design_scores_gemma":[0.00074201747,0.00042385433,0.004390421,0.003145823,0.00012246135,0.000012959572,0.00005892502,0.000012692755,0.0027617817,0.0010173242,0.98707855,0.00023318839],"about_ca_topic_score_codex":0.0007700691,"about_ca_topic_score_gemma":0.00025933172,"teacher_disagreement_score":0.9870725,"about_ca_system_score_codex":0.000012834039,"about_ca_system_score_gemma":0.00012593741,"threshold_uncertainty_score":0.5712572},"labels":[],"label_agreement":null},{"id":"W4319433359","doi":"10.4049/jimmunol.206.supp.112.09","title":"Priming of microvascular endothelium by microbiota-derived metabolites regulates neutrophil trafficking to the liver during sepsis","year":2021,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Granulopoiesis; Intravital microscopy; Biology; Sepsis; Immunology; Endothelium; Immune system; Neutrophil extracellular traps; Inflammation; Priming (agriculture); Microbiology; Cell biology; Stem cell; In vivo; Endocrinology; Haematopoiesis","score_opus":0.00677011410553584,"score_gpt":0.19936941682759923,"score_spread":0.19259930272206338,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319433359","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8644344,0.13253325,0.00012058043,0.0022120308,0.0005264527,0.0001349684,0.0000056815215,0.000011184024,0.00002144358],"genre_scores_gemma":[0.9914909,0.007406998,0.00016245409,0.00019807798,0.000056954676,0.0000028945967,0.000010753493,0.000024247798,0.00064672914],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972733,0.0013463999,0.00080197415,0.00014346302,0.00005916271,0.0003756513],"domain_scores_gemma":[0.99801457,0.0004416074,0.00064289075,0.000496281,0.0003904849,0.000014149605],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00095441384,0.00020742149,0.0005317501,0.00016533348,0.00032721175,0.00001928433,0.00062477327,0.00019153098,0.00018784133],"category_scores_gemma":[0.00025779274,0.00012537286,0.0003210195,0.00025665847,0.00028969985,0.00012857109,0.00020682254,0.0005206737,0.00006119312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007317108,0.00006809048,0.000012507031,0.000017256078,0.0015750049,0.000011598353,0.0036891894,0.00011379832,0.99004763,0.000046930392,0.00060833705,0.0030779415],"study_design_scores_gemma":[0.0010700815,0.00014299703,0.004758226,0.00009048713,0.00033702824,0.0021290388,0.0015768476,0.0000012473403,0.967194,0.0000131743,0.022562541,0.0001243195],"about_ca_topic_score_codex":0.00004314826,"about_ca_topic_score_gemma":0.0000048988345,"teacher_disagreement_score":0.12705648,"about_ca_system_score_codex":0.000047812297,"about_ca_system_score_gemma":0.0001389955,"threshold_uncertainty_score":0.5112557},"labels":[],"label_agreement":null},{"id":"W4319596695","doi":"10.3390/biomedicines11020483","title":"Oncostatin M Receptor Type II Knockout Mitigates Inflammation and Improves Survival from Sepsis in Mice","year":2023,"lang":"en","type":"article","venue":"Biomedicines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"University Hospital Foundation; Royal Alexandra Hospital Foundation; Surgical Infection Society; American College of Surgeons","keywords":"Oncostatin M; Sepsis; Cytokine; Tumor necrosis factor alpha; Gene knockout; Inflammation; Receptor; Knockout mouse; Peritonitis; Medicine; Peritoneum; Intraperitoneal injection; Internal medicine; Endocrinology; Immunology; Interleukin 6; Andrology; Biology; Pathology","score_opus":0.013036175827539364,"score_gpt":0.2548316165923585,"score_spread":0.24179544076481913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4319596695","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99356294,0.0020824925,0.0000023489265,0.0026329746,0.0012226079,0.0001656333,0.000018769348,0.000103669314,0.00020858434],"genre_scores_gemma":[0.9947501,0.0009452719,0.00006122637,0.00005143054,0.00014981083,0.000019034043,0.0012670539,0.000014570779,0.0027414998],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991113,0.00014473127,0.00030223106,0.00019605066,0.000037696573,0.0002080051],"domain_scores_gemma":[0.9994097,0.00031189885,0.0000905389,0.00011371561,0.000058658803,0.000015540487],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030798672,0.00012555587,0.00020962565,0.00029222606,0.00011349578,0.000010015724,0.00008133093,0.0001723626,0.00020555002],"category_scores_gemma":[0.0003050587,0.00010445528,0.000021546366,0.0004384153,0.0001359848,0.00012430688,0.00007033869,0.00010839639,0.0005433984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020006593,0.000010417598,0.0013884867,0.000016118403,0.000044828495,0.0000020110665,0.0020333072,2.788756e-7,0.957317,0.00003617178,0.004995472,0.033955853],"study_design_scores_gemma":[0.0019029398,0.0003227279,0.12991135,0.0001625094,0.000030204414,0.000003244669,0.0030199848,0.000036294026,0.73330575,0.00025162235,0.13083331,0.00022007024],"about_ca_topic_score_codex":0.00061548385,"about_ca_topic_score_gemma":0.000080252,"teacher_disagreement_score":0.22401126,"about_ca_system_score_codex":0.000022821227,"about_ca_system_score_gemma":0.000041403673,"threshold_uncertainty_score":0.6984468},"labels":[],"label_agreement":null},{"id":"W4320061499","doi":"10.4049/jimmunol.206.supp.98.12","title":"Receptor interacting protein kinase 1 (RIPK1) pathways regulate innate B cell developmental checkpoints and delay effector function","year":2021,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Mary's University","funders":"","keywords":"RIPK1; Biology; Cell biology; Innate immune system; B cell; Germinal center; Immunology; Programmed cell death; Immune system; Apoptosis; Antibody; Necroptosis; Biochemistry","score_opus":0.008629992792371095,"score_gpt":0.1997627599667828,"score_spread":0.19113276717441172,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4320061499","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98790884,0.009688658,0.00022874259,0.0005365858,0.0011928983,0.00016071493,0.0000024612732,0.000016971117,0.00026409962],"genre_scores_gemma":[0.99759936,0.0005479918,0.0002613516,0.00007549211,0.000046308254,0.000005908478,0.00002491059,0.000017691804,0.0014209852],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997739,0.0011976777,0.00061238126,0.00012846405,0.00004593585,0.00027650368],"domain_scores_gemma":[0.998592,0.00031555208,0.00059530546,0.0001694202,0.00031188567,0.000015790163],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001128533,0.00017685804,0.0003121642,0.00014210213,0.00027102136,0.000021272288,0.00018342274,0.0002203695,0.00046753412],"category_scores_gemma":[0.0004541171,0.00012466617,0.00007869768,0.00016901862,0.00016300424,0.00024938612,0.00015990851,0.00066872075,0.0002807143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00263501,0.00006532587,0.00006001043,0.000020642305,0.00031556835,0.000025155061,0.0012452088,0.0000027180618,0.9798695,0.00005032822,0.00042411612,0.015286445],"study_design_scores_gemma":[0.0018613804,0.00048998895,0.0053649517,0.00016683426,0.000069502,0.0025341792,0.0013974439,0.00000221865,0.9699018,0.000086153676,0.017989505,0.00013603986],"about_ca_topic_score_codex":0.000015769238,"about_ca_topic_score_gemma":0.000004463118,"teacher_disagreement_score":0.017565388,"about_ca_system_score_codex":0.00009812112,"about_ca_system_score_gemma":0.00021166741,"threshold_uncertainty_score":0.51191705},"labels":[],"label_agreement":null},{"id":"W4321459319","doi":"10.3389/fimmu.2022.1041552","title":"ICAMs are dispensable for influenza clearance and anti-viral humoral and cellular immunity","year":2023,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Institutes of Health","keywords":"Immunology; Biology; Humoral immunity; CD8; Virus; Cytotoxic T cell; Immunity; Antibody; Cellular immunity; Virology; Immune system","score_opus":0.012744419350771101,"score_gpt":0.23679694587086578,"score_spread":0.22405252652009466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321459319","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9805045,0.016719729,0.00044273157,0.00034143194,0.0013548905,0.0004219789,0.00001667392,0.000102962345,0.000095090756],"genre_scores_gemma":[0.99663246,0.0013255469,0.00034216762,0.0001224179,0.000021170401,0.000081987455,0.0001329622,0.000027872027,0.0013134115],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9984263,0.0002892472,0.00037587405,0.0003280829,0.00002399199,0.00055645645],"domain_scores_gemma":[0.9993524,0.00012883316,0.00014956814,0.0003108744,0.00004384599,0.000014477837],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004900977,0.00020748189,0.00048714416,0.00035343593,0.00030594773,0.0000246965,0.00019982831,0.00039464305,0.000023613287],"category_scores_gemma":[0.00018829397,0.00021013865,0.000058406335,0.00023780052,0.0005806547,0.00021656015,0.00017853967,0.00038077284,0.00007726293],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032176112,0.00011265127,0.12255631,0.00014756595,0.00046236307,0.000027377913,0.0022585785,0.000029282886,0.8317234,0.0026188297,0.012414396,0.024431646],"study_design_scores_gemma":[0.008023884,0.00052551116,0.6748309,0.00014567019,0.000069807065,0.00007106111,0.004961778,0.00031980107,0.15027608,0.0040632673,0.15598983,0.00072240253],"about_ca_topic_score_codex":0.00008892223,"about_ca_topic_score_gemma":0.000010089845,"teacher_disagreement_score":0.6814473,"about_ca_system_score_codex":0.000039268045,"about_ca_system_score_gemma":0.000032368716,"threshold_uncertainty_score":0.85692054},"labels":[],"label_agreement":null},{"id":"W4321748510","doi":"10.1097/md.0000000000033040","title":"Association of TLR4 gene 2026A/G (rs1927914), 896A/G (rs4986790), and 1196C/T (rs4986791) polymorphisms and cancer susceptibility: Meta-analysis and trial sequential analysis","year":2023,"lang":"en","type":"review","venue":"Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"National Natural Science Foundation of China","keywords":"Medicine; Meta-analysis; Odds ratio; Internal medicine; Colorectal cancer; Oncology; Publication bias; Cancer; Inclusion and exclusion criteria; Confidence interval; Pathology","score_opus":0.10687588410703934,"score_gpt":0.36868232558791114,"score_spread":0.2618064414808718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4321748510","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0052857967,0.9917974,0.00012008628,0.00083215954,0.00045263628,0.00104468,0.00038144583,0.00005134422,0.000034445697],"genre_scores_gemma":[0.0012883792,0.9891039,0.000025001953,0.000045913297,0.00019066103,0.00015834668,0.0020197583,0.00004413188,0.0071238666],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.99496454,0.0016563457,0.0018259527,0.000886105,0.00022392848,0.00044312098],"domain_scores_gemma":[0.9961838,0.001183427,0.0017503661,0.00062736776,0.00018639305,0.000068631176],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0032286933,0.0006283852,0.0070150616,0.0019479804,0.00020708563,0.000028970157,0.00021659755,0.00096268667,0.0022358538],"category_scores_gemma":[0.0006156342,0.00043703997,0.0015167533,0.0023254862,0.00039771738,0.000113485374,0.0002142875,0.0005289998,0.000022143897],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014924889,0.00007763777,0.00023047513,0.0023685805,0.82015395,0.000013671379,0.00066914933,0.0000029429368,0.0022507308,0.00004664795,0.0015477886,0.17114592],"study_design_scores_gemma":[0.0049276864,0.00031672226,0.00024147525,0.00019097258,0.7717821,0.000013447267,0.00005659753,0.000009960577,0.00021991285,0.000029063616,0.22184815,0.00036392288],"about_ca_topic_score_codex":0.0034046494,"about_ca_topic_score_gemma":0.0012531942,"teacher_disagreement_score":0.22030036,"about_ca_system_score_codex":0.00015793035,"about_ca_system_score_gemma":0.00017342863,"threshold_uncertainty_score":0.99980813},"labels":[],"label_agreement":null},{"id":"W4323052161","doi":"10.1101/2023.03.01.530640","title":"Tafazzin knockdown in murine mesenchymal stem cells enhances the tafazzin knockdown mediated elevation in interleukin-10 secretion from murine B lymphocytes","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Gene knockdown; Mesenchymal stem cell; Biology; Molecular biology; Haematopoiesis; Cytokine; Cell biology; Stem cell; Cell culture; Immunology","score_opus":0.012824824724650198,"score_gpt":0.21071715486483908,"score_spread":0.1978923301401889,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323052161","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9912702,0.0031789867,0.00015570801,0.00054582045,0.002790477,0.0013531293,0.00027651482,0.0004166917,0.000012492503],"genre_scores_gemma":[0.99704134,0.0014809209,0.000092648515,0.00008932997,0.00025263405,0.00061137934,0.000057252895,0.00013295589,0.00024151706],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99456114,0.0013731475,0.0016297532,0.0012864202,0.00023126561,0.0009182587],"domain_scores_gemma":[0.99647063,0.0008435621,0.0009198018,0.0013403875,0.00036325026,0.00006234563],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0019041423,0.00084391644,0.0010188426,0.001017645,0.00021528042,0.00015548643,0.0010302621,0.0014004037,0.000674557],"category_scores_gemma":[0.0004352186,0.000754106,0.00021459303,0.0011579707,0.00027625807,0.00034487311,0.00080389535,0.0015152552,0.0016724388],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054724974,0.00016481835,0.0026361465,0.00014672162,0.00023157294,0.000051102685,0.00019128845,0.00018688648,0.9951613,0.000089118264,0.0005627667,0.000031021154],"study_design_scores_gemma":[0.0020761024,0.000103728074,0.097944014,0.0009258846,0.00007457158,7.744755e-8,0.000070060465,0.00064085104,0.88945186,0.000008857638,0.007946989,0.00075699604],"about_ca_topic_score_codex":0.0017334813,"about_ca_topic_score_gemma":0.0003289755,"teacher_disagreement_score":0.10570944,"about_ca_system_score_codex":0.00089857477,"about_ca_system_score_gemma":0.0007826302,"threshold_uncertainty_score":0.999896},"labels":[],"label_agreement":null},{"id":"W4323348324","doi":"10.1084/jem.20220170","title":"Humans with inherited MyD88 and IRAK-4 deficiencies are predisposed to hypoxemic COVID-19 pneumonia","year":2023,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":56,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Fundación Canaria Instituto de Investigación Sanitaria de Canarias; Agencia Estatal de Investigación; Instituto de Salud Carlos III; National Center for Advancing Translational Sciences; HORIZON EUROPE Framework Programme; National Center for Research Resources; Universität Zürich; Generalitat de Catalunya; Bundesministerium für Bildung und Forschung; Ministerio de Ciencia e Innovación; Fundación Mapfre; Else Kröner-Fresenius-Stiftung; European Commission; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Centres de Recerca de Catalunya; CSL Behring; National Institute of Allergy and Infectious Diseases; Howard Hughes Medical Institute; National Science Foundation","keywords":"Pneumonia; Penetrance; Medicine; Population; Immunology; Atypical pneumonia; Internal medicine; Biology; Gene; Genetics; Phenotype","score_opus":0.030526405942801867,"score_gpt":0.2989012670301731,"score_spread":0.26837486108737124,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323348324","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98784745,0.006724672,0.00005884978,0.0047513987,0.00025614095,0.00022290341,0.0000020434659,0.000029589406,0.000106984786],"genre_scores_gemma":[0.998271,0.00022881546,0.000012054943,0.0009166932,0.00005731137,0.0000062305808,0.0000070150872,0.000010973635,0.000489947],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990855,0.00020783742,0.0003314689,0.00008720781,0.000092518814,0.00019550149],"domain_scores_gemma":[0.99927324,0.00023182205,0.0002375534,0.00014396843,0.000057859423,0.000055529337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072063005,0.0001249603,0.00025351055,0.00021272793,0.00023876435,0.0000064725054,0.00019274639,0.000058381138,0.00012610813],"category_scores_gemma":[0.00022361825,0.00006594668,0.000024523746,0.00028060007,0.00033301936,0.00008411303,0.000060684946,0.00018663309,0.000043440243],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015405496,0.00002792356,0.00053952786,0.00000880939,0.000058426987,0.00002359314,0.020705566,0.000023017848,0.97333074,0.00003517929,0.003543064,0.00016361976],"study_design_scores_gemma":[0.0063886824,0.0065008984,0.0679706,0.00043015662,0.00014752366,0.0023042448,0.104489885,0.000013117534,0.793056,0.000063496394,0.018380458,0.00025489266],"about_ca_topic_score_codex":0.000047208578,"about_ca_topic_score_gemma":0.000008280584,"teacher_disagreement_score":0.18027468,"about_ca_system_score_codex":0.00006445568,"about_ca_system_score_gemma":0.000058307294,"threshold_uncertainty_score":0.26892278},"labels":[],"label_agreement":null},{"id":"W4323350197","doi":"10.1155/2023/2899271","title":"TIRAP, TRAM, and Toll-Like Receptors: The Untold Story","year":2023,"lang":"en","type":"review","venue":"Mediators of Inflammation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"TLR3; Proinflammatory cytokine; Receptor; Innate immune system; TRIF; Signal transducing adaptor protein; Pattern recognition receptor; Signal transduction; Cell biology; Toll-like receptor; Biology; Toll; Myeloid cells; Immunology; Inflammation; Genetics","score_opus":0.02399735310691562,"score_gpt":0.28008037245552303,"score_spread":0.2560830193486074,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4323350197","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0020256282,0.99384874,0.000008609774,0.00013866709,0.0027612795,0.0009273231,0.000015592661,0.00011416643,0.00015998614],"genre_scores_gemma":[0.00006395572,0.99604744,0.000008153257,0.000010349681,0.0001981131,0.00017276895,0.0006190301,0.00005189192,0.0028283123],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99740744,0.0009512949,0.00096265884,0.0002896119,0.00010405958,0.00028492932],"domain_scores_gemma":[0.99743974,0.0010660393,0.0009168807,0.00046649738,0.0000894728,0.000021367385],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011274569,0.00036640198,0.0010572716,0.0004222801,0.00021018344,0.000022537284,0.00034333585,0.00075725303,0.0001269493],"category_scores_gemma":[0.00049208594,0.00024485428,0.0002875311,0.00034674292,0.00028362687,0.00017874928,0.00010400254,0.0006204596,0.0008508248],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00003270704,0.00001037249,0.0000044239805,0.0042494764,0.0003892894,0.0000017366723,0.00080542115,4.9577994e-7,0.00033642276,0.0005117065,0.008401754,0.9852562],"study_design_scores_gemma":[0.00029447163,0.00006167126,0.000025412737,0.0023870256,0.00042672842,0.000023756293,0.00017302552,0.0000011807714,0.0007280021,0.000033225777,0.99560916,0.00023631305],"about_ca_topic_score_codex":0.000018716286,"about_ca_topic_score_gemma":0.000016447068,"teacher_disagreement_score":0.9872074,"about_ca_system_score_codex":0.0000710052,"about_ca_system_score_gemma":0.00024806504,"threshold_uncertainty_score":0.9999271},"labels":[],"label_agreement":null},{"id":"W4324334798","doi":"10.1016/j.vetimm.2023.110579","title":"Immunotolerance of dairy heifers in response to repeated exposure to bacterial lipopolysaccharide endotoxin","year":2023,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Lipopolysaccharide; Immune system; Chemokine; Immunology; Biology; Innate immune system; Cytokine; Sepsis; Saline; Inflammation; Endocrinology; Internal medicine; Medicine","score_opus":0.014818686626052636,"score_gpt":0.2556866176745352,"score_spread":0.2408679310484826,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4324334798","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.993139,0.002328301,0.000032881348,0.0012760977,0.00204502,0.0008394854,0.00004607383,0.00020809956,0.000085026964],"genre_scores_gemma":[0.9975319,0.00050388876,0.0001401227,0.0002500057,0.000023196802,0.00030993522,0.00013604302,0.000050006987,0.0010549357],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99505687,0.0020309067,0.0011710508,0.0007271236,0.000062189574,0.0009518649],"domain_scores_gemma":[0.998099,0.00056776596,0.00023969101,0.00093284715,0.000116054594,0.000044607903],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001839529,0.00043833026,0.0009242598,0.0015685733,0.00023430087,0.00001772218,0.00057122693,0.00066559884,0.0002368193],"category_scores_gemma":[0.000827421,0.0004594505,0.0001239276,0.0008784148,0.00043990457,0.0002404253,0.0006838175,0.000558042,0.0010202368],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.040270254,0.00010645075,0.0008295193,0.000026084565,0.00012215407,0.00026927106,0.0042527462,0.000026739732,0.94575167,0.00012503163,0.00015518273,0.0080649005],"study_design_scores_gemma":[0.0040879757,0.008603682,0.32029584,0.00016738479,0.000024603822,0.0016544042,0.0013172994,0.0000026647174,0.64492774,0.000056246172,0.018326677,0.00053544785],"about_ca_topic_score_codex":0.00014288197,"about_ca_topic_score_gemma":0.000009078609,"teacher_disagreement_score":0.31946632,"about_ca_system_score_codex":0.00008257696,"about_ca_system_score_gemma":0.00012781215,"threshold_uncertainty_score":0.9997857},"labels":[],"label_agreement":null},{"id":"W4327519711","doi":"10.2139/ssrn.4379817","title":"Generation and Structure-Activity Relationships of Novel Imidazo-Thienopyridine Based TLR7 Agonists: Application as Payloads for Immunostimulatory Antibody Drug-Conjugates","year":2023,"lang":"en","type":"article","venue":"SSRN Electronic Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Zymeworks (Canada)","funders":"","keywords":"TLR7; Conjugate; Drug; Thienopyridine; Pharmacology; Chemistry; Antibody; Antibody-drug conjugate; Receptor; Medicine; Monoclonal antibody; Immunology; Biochemistry; Toll-like receptor","score_opus":0.018606846018105003,"score_gpt":0.2795671108920985,"score_spread":0.2609602648739935,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4327519711","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9653682,0.0022811259,0.030777503,0.00086147245,0.00020745394,0.00041184737,0.000023636905,0.000049713584,0.000019038076],"genre_scores_gemma":[0.9983595,0.0006823724,0.000083027764,0.000024588695,0.00007578751,0.000022270973,0.00051591167,0.000023310853,0.00021319946],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983692,0.00020418568,0.00038714023,0.0002189673,0.000061845945,0.00075866416],"domain_scores_gemma":[0.99893993,0.0002940831,0.00036405932,0.00019980705,0.00018455296,0.000017577604],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016916371,0.00016859364,0.00023810401,0.00027799973,0.0005948676,0.000027141028,0.0001307313,0.00020269475,0.000012664401],"category_scores_gemma":[0.00026978357,0.00015652504,0.000088748755,0.00025083224,0.00011009769,0.0002472939,0.00002498189,0.00083820685,0.000018336008],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00047356932,0.00004906776,0.0008178337,0.000018231938,0.00014916054,1.3797398e-7,0.00013602793,0.0006078458,0.97147363,0.02068399,0.00005178967,0.0055386843],"study_design_scores_gemma":[0.0046999147,0.00055112346,0.016851244,0.000037947335,0.00014300318,0.00018326742,0.0005359119,0.01619444,0.94440037,0.014210401,0.0018531283,0.00033926748],"about_ca_topic_score_codex":0.000047474143,"about_ca_topic_score_gemma":0.000060703762,"teacher_disagreement_score":0.032991324,"about_ca_system_score_codex":0.00021090683,"about_ca_system_score_gemma":0.0007753191,"threshold_uncertainty_score":0.6382906},"labels":[],"label_agreement":null},{"id":"W4362468736","doi":"10.3389/fimmu.2023.1155200","title":"C-type lectin receptor agonists elicit functional IL21-expressing Tfh cells and induce primary B cell responses in neonates","year":2023,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"Université de Genève; Karolinska Institutet; European Commission; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Germinal center; Adjuvant; Biology; Immunology; B cell; Receptor; CD40; Antibody; Cytotoxic T cell; Genetics","score_opus":0.011239685557262721,"score_gpt":0.2166355225773009,"score_spread":0.20539583702003816,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362468736","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9734334,0.018103128,0.000104478335,0.000477365,0.006942071,0.00027169255,0.0000061178444,0.00012663985,0.0005351047],"genre_scores_gemma":[0.9707551,0.0046153646,0.00096903293,0.00025589266,0.00006135611,0.000084284125,0.00051515596,0.000061282524,0.022682546],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974371,0.00087375287,0.0005409474,0.00046176635,0.000051105344,0.0006353216],"domain_scores_gemma":[0.9990323,0.00042710826,0.00016591152,0.00029643474,0.00006208799,0.000016165239],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00072634424,0.0002612291,0.00046868806,0.0011045947,0.00021669953,0.000028593966,0.00022617297,0.0006271211,0.00015043403],"category_scores_gemma":[0.00024298076,0.00027732248,0.000056407378,0.00077869854,0.00036481614,0.00023544123,0.00019466621,0.00073737896,0.0004448392],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0034849648,0.000074023555,0.008128725,0.000028632341,0.00007289978,0.000020085741,0.0011394771,0.000024908046,0.94247323,0.00003865511,0.028382074,0.016132291],"study_design_scores_gemma":[0.003822589,0.0003613695,0.17165312,0.00011891018,0.000020166519,0.000055139095,0.0018378993,0.0000364827,0.6464275,0.0004987624,0.17466576,0.0005023149],"about_ca_topic_score_codex":0.00014089671,"about_ca_topic_score_gemma":0.00001351346,"teacher_disagreement_score":0.29604578,"about_ca_system_score_codex":0.0002000799,"about_ca_system_score_gemma":0.0002212286,"threshold_uncertainty_score":0.9999679},"labels":[],"label_agreement":null},{"id":"W4362521580","doi":"10.1093/femspd/ftad005","title":"Comparative study of GBP recruitment on two cytosol-dwelling pathogens, <i>Francisella novicida</i> and <i>Shigella flexneri</i> highlights differences in GBP repertoire and in GBP1 motif requirements","year":2023,"lang":"en","type":"article","venue":"Pathogens and Disease","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Fondation pour la Recherche Médicale; Agence Nationale de la Recherche; Stanford University","keywords":"Francisella; Shigella flexneri; Biology; Shigella; Francisella tularensis; Microbiology; Genetics; Bacteria; Salmonella; Virulence; Escherichia coli; Gene","score_opus":0.06570622270103298,"score_gpt":0.302130722094756,"score_spread":0.236424499393723,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4362521580","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99468505,0.0038604697,0.000003983223,0.00012147866,0.0001312718,0.0009916477,0.00008422108,0.000031960026,0.000089889036],"genre_scores_gemma":[0.99793565,0.0016463303,0.000010411598,0.000056852914,0.000013680362,0.00011985347,0.00008591887,0.000013852719,0.000117460295],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9980121,0.00048407327,0.00053929375,0.00052336307,0.000104545514,0.00033662282],"domain_scores_gemma":[0.99923533,0.00021110328,0.0001556352,0.00025985725,0.000054373515,0.00008370268],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00046260044,0.00027218074,0.000532494,0.00028844233,0.0001810423,0.000025305651,0.00008774661,0.00009466248,0.000014920128],"category_scores_gemma":[0.000065365304,0.00022449036,0.000041124757,0.00028559435,0.00014413215,0.000092758426,0.00010941971,0.00014177516,0.000015528307],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005093738,0.0012947399,0.28718188,0.000185689,0.00014361566,0.00023722774,0.012799443,0.00013746604,0.6851165,0.00017692483,0.000081465,0.0075513013],"study_design_scores_gemma":[0.009322727,0.0014596933,0.94526654,0.0004857637,0.00015710124,0.000011722907,0.00872462,0.0007452782,0.031740822,0.00026789436,0.0011759514,0.0006418603],"about_ca_topic_score_codex":0.0001318305,"about_ca_topic_score_gemma":0.00014732432,"teacher_disagreement_score":0.6580847,"about_ca_system_score_codex":0.000030322262,"about_ca_system_score_gemma":0.000054447693,"threshold_uncertainty_score":0.91544515},"labels":[],"label_agreement":null},{"id":"W4363676592","doi":"10.3390/vaccines11040818","title":"Toll-Like Receptors and the Response to Radiotherapy in Solid Tumors: Challenges and Opportunities","year":2023,"lang":"en","type":"review","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Immune system; Radiation therapy; Toll-like receptor; Cancer research; Receptor; Immunotherapy; Inflammation; Cancer; Biology; Pathogen-associated molecular pattern; Immunology; Innate immune system; Signal transduction; Medicine; Pattern recognition receptor; Cell biology; Internal medicine; Genetics","score_opus":0.079510308348453,"score_gpt":0.3224379914748294,"score_spread":0.24292768312637636,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4363676592","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0026976157,0.9928728,7.2322797e-7,0.0028465718,0.00061925955,0.0008367569,0.000006111813,0.000063628664,0.000056564753],"genre_scores_gemma":[0.00003705322,0.99060786,0.0000055474866,0.000110519584,0.0000644129,0.00025089146,0.00003472561,0.000046200723,0.008842765],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970281,0.0017711216,0.000580413,0.00031509603,0.000028157034,0.00027711657],"domain_scores_gemma":[0.99783844,0.0016030358,0.00018841126,0.00031970488,0.000029656396,0.000020732987],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017521748,0.0003334232,0.0013107469,0.0005406872,0.000117926735,0.000030552426,0.00020780659,0.00033447228,0.000052006584],"category_scores_gemma":[0.0002745639,0.00020336942,0.00011336199,0.00013859822,0.00010065518,0.00007652612,0.00012480597,0.0002814981,0.00008465107],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020495593,0.0000105858435,5.571916e-7,0.0014368002,0.00022716566,0.00001431014,0.0025207922,1.18144996e-7,0.000054158016,0.00046648682,0.00220858,0.9910109],"study_design_scores_gemma":[0.0010134928,0.00012955593,0.000083468956,0.0038484207,0.00008040905,0.00017788156,0.0007300227,3.7689298e-7,0.000016726746,0.000047906407,0.99363744,0.0002343137],"about_ca_topic_score_codex":0.000027436727,"about_ca_topic_score_gemma":0.000035851204,"teacher_disagreement_score":0.99142885,"about_ca_system_score_codex":0.000033978653,"about_ca_system_score_gemma":0.00012299092,"threshold_uncertainty_score":0.82931644},"labels":[],"label_agreement":null},{"id":"W4365515424","doi":"10.3389/fimmu.2023.1145826","title":"Establishing the role of the FES tyrosine kinase in the pathogenesis, pathophysiology, and severity of sepsis and its outcomes","year":2023,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Kingston General Hospital; Queen's University","funders":"Physicians' Services Incorporated Foundation","keywords":"Sepsis; Medicine; Immune system; Septic shock; Immunology; Inflammation; Cytokine; Immune dysregulation; Pathophysiology; Internal medicine","score_opus":0.006276800829307528,"score_gpt":0.2123879736680616,"score_spread":0.20611117283875408,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4365515424","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.966052,0.031679552,0.000003793791,0.0013221868,0.0005828846,0.0002861185,0.000020829339,0.000010853278,0.000041787585],"genre_scores_gemma":[0.99657434,0.0031194992,0.000024819577,0.000111293724,0.0000056132426,0.000036347526,0.000019036537,0.000007736435,0.0001013218],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99804765,0.001127597,0.00036277826,0.00017497764,0.0000330623,0.00025390988],"domain_scores_gemma":[0.99891114,0.00052981114,0.00018228423,0.00033743863,0.00003573863,0.0000035574772],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00084125646,0.00013325847,0.00035211907,0.00018122328,0.00014387954,0.0000073885194,0.00038505427,0.00023605421,0.000006276215],"category_scores_gemma":[0.000502499,0.0000716871,0.0000598994,0.0004208931,0.00053925096,0.00010099459,0.00026272683,0.00030724003,0.0000028393586],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003153583,0.000057917237,0.25458363,0.00002968244,0.00012046029,0.0000027604594,0.0051748534,0.0000088643565,0.71355385,0.0010609671,0.00050958875,0.024582086],"study_design_scores_gemma":[0.0006403236,0.0000649662,0.9376755,0.000031975014,0.000024125791,0.000010215804,0.0064650746,0.00003810579,0.05021321,0.0025262348,0.0022321702,0.00007809974],"about_ca_topic_score_codex":0.00023173164,"about_ca_topic_score_gemma":0.000053120286,"teacher_disagreement_score":0.6830919,"about_ca_system_score_codex":0.000015756541,"about_ca_system_score_gemma":0.000038116046,"threshold_uncertainty_score":0.29233152},"labels":[],"label_agreement":null},{"id":"W4367059102","doi":"10.1126/sciadv.adf6205","title":"Coupling of protein condensates to ordered lipid domains determines functional membrane organization","year":2023,"lang":"en","type":"article","venue":"Science Advances","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":114,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Hospital for Sick Children; University of Toronto","funders":"National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Hospital for Sick Children; National Institutes of Health; Volkswagen Foundation","keywords":"Lipid raft; Signal transducing adaptor protein; Lipid microdomain; Cytoplasm; Transmembrane protein; Biophysics; Cell biology; Membrane; Lipid bilayer; Chemistry; Signal transduction; Biology; Receptor; Biochemistry","score_opus":0.011314773820326291,"score_gpt":0.2523496545632007,"score_spread":0.2410348807428744,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4367059102","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984158,0.00017155279,0.0003207173,0.00026162394,0.00048294605,0.00020444012,0.0000030682122,0.00008198835,0.00005783269],"genre_scores_gemma":[0.99840504,0.000017124867,0.000138019,0.000022427883,0.000020829657,0.00001529022,0.0000314546,0.0000056482972,0.0013441748],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99931,0.000015057826,0.00019649623,0.00019217908,0.00007593409,0.00021032558],"domain_scores_gemma":[0.9994178,0.00007420954,0.000090897025,0.00013069082,0.00027315927,0.000013235431],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040233685,0.000072787574,0.000113098155,0.00025605614,0.0002930864,0.000015347307,0.00017625208,0.00004135696,0.00015923778],"category_scores_gemma":[0.0006481467,0.00006151156,0.0000163929,0.0015091541,0.000328223,0.00042937088,0.00006164975,0.00004470149,0.00043971013],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005045638,0.000008616096,0.00058501994,0.000013479673,0.0000046247824,4.0478258e-7,0.00020053849,0.0013191036,0.9954676,0.00023011655,0.000027434637,0.0020925992],"study_design_scores_gemma":[0.00023001635,0.0000737033,0.005780491,0.000032901207,0.0000034971445,0.0000057551524,0.00036669592,0.000055908644,0.990458,0.00006937792,0.0028462503,0.000077363475],"about_ca_topic_score_codex":0.000006395676,"about_ca_topic_score_gemma":0.0000072114917,"teacher_disagreement_score":0.005195471,"about_ca_system_score_codex":0.000018477022,"about_ca_system_score_gemma":0.00012721105,"threshold_uncertainty_score":0.5651731},"labels":[],"label_agreement":null},{"id":"W4377141782","doi":"10.1016/j.bmcl.2023.129348","title":"Generation and structure-activity relationships of novel imidazo-thienopyridine based TLR7 agonists: application as payloads for immunostimulatory antibody drug-conjugates","year":2023,"lang":"en","type":"article","venue":"Bioorganic & Medicinal Chemistry Letters","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Zymeworks (Canada)","funders":"","keywords":"Chemistry; TLR7; In vivo; Pharmacology; In vitro; Linker; Biochemistry; Toll-like receptor; Receptor; Innate immune system; Biology","score_opus":0.02386460946453783,"score_gpt":0.2714027146778136,"score_spread":0.24753810521327574,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4377141782","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9900294,0.0005226181,0.0043977615,0.004310278,0.00019093644,0.00038513975,0.000057624085,0.000090468784,0.000015750758],"genre_scores_gemma":[0.9976163,0.00003438102,0.000099495315,0.00019251108,0.0001208195,0.000031795753,0.0018265924,0.000024582494,0.00005351019],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99888974,0.00007480268,0.00037045332,0.00033220268,0.00008257834,0.00025021203],"domain_scores_gemma":[0.9989616,0.0003219388,0.00027859985,0.0003072739,0.00010237133,0.000028190003],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048411943,0.00020585359,0.000273627,0.00009866938,0.00028779154,0.000013498256,0.00014134051,0.0002287558,0.00006355065],"category_scores_gemma":[0.0003701549,0.00019670678,0.000061256986,0.00026130123,0.00025844344,0.000107254455,0.000035562505,0.00026185968,0.000017188355],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000278527,0.000037411945,0.00064108707,0.00015044537,0.00007704412,8.2852745e-7,0.00018452694,0.00004688783,0.9971852,0.00004529185,0.0007244686,0.0006283332],"study_design_scores_gemma":[0.0019557683,0.00003877456,0.010272439,0.00004842734,0.00008508573,0.000025888823,0.000119300574,0.002158571,0.98395693,0.000017631595,0.0011349204,0.00018626747],"about_ca_topic_score_codex":0.00003963171,"about_ca_topic_score_gemma":0.0000014917617,"teacher_disagreement_score":0.013228222,"about_ca_system_score_codex":0.000071534836,"about_ca_system_score_gemma":0.00010663422,"threshold_uncertainty_score":0.8021469},"labels":[],"label_agreement":null},{"id":"W4378594166","doi":"10.1016/j.athplu.2023.05.002","title":"Fibronectin extra domain a limits liver dysfunction and protects mice during acute inflammation","year":2023,"lang":"en","type":"article","venue":"Atherosclerosis Plus","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Fondazione Telethon; University of Calgary","keywords":"Sepsis; Inflammation; Fibronectin; Immunology; Spleen; Alternative splicing; Biology; Gene isoform; Cell; Gene; Biochemistry","score_opus":0.016328277798518278,"score_gpt":0.2156029983638015,"score_spread":0.19927472056528323,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4378594166","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9977391,0.00036966396,0.000176896,0.0003005392,0.00029805198,0.0005630003,0.000005921892,0.00034564894,0.0002011912],"genre_scores_gemma":[0.99559206,0.00061924726,0.00007938187,0.000026075373,0.000057996276,0.0001471286,0.00008403205,0.000031492324,0.0033625679],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987497,0.00022163597,0.00029266818,0.00030971784,0.000056100424,0.00037019822],"domain_scores_gemma":[0.9994619,0.00010576392,0.00014169318,0.00021945761,0.00004895295,0.000022230812],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003545822,0.00019391465,0.00020619502,0.00018865589,0.00041734683,0.000047713966,0.000101357175,0.00027390505,0.0001015631],"category_scores_gemma":[0.00007228047,0.00018603916,0.00006600225,0.00031044096,0.00008133648,0.00033330446,0.0000771458,0.00021723895,0.0015524516],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035341375,0.0000108527465,0.00016647652,0.000044742847,0.00010732152,0.0000031686618,0.0022263553,0.000019152985,0.9921026,0.00011950298,0.00020854207,0.0046378504],"study_design_scores_gemma":[0.0021423723,0.00017285436,0.16483577,0.0001212798,0.00004449476,0.000055043904,0.0003293214,0.000094663534,0.82918787,0.00008836075,0.0026827045,0.00024528237],"about_ca_topic_score_codex":0.00006166872,"about_ca_topic_score_gemma":0.000022424236,"teacher_disagreement_score":0.16466929,"about_ca_system_score_codex":0.00006910975,"about_ca_system_score_gemma":0.00003518019,"threshold_uncertainty_score":0.99922496},"labels":[],"label_agreement":null},{"id":"W4379093637","doi":"10.1159/000527708","title":"Adsorption of Endotoxin and Mitigation of Sepsis","year":2023,"lang":"en","type":"review","venue":"Contributions to nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"","keywords":"Hemoperfusion; Medicine; Sepsis; Septic shock; Polymyxin; Polymyxin B; Resuscitation; Extracorporeal; Intensive care medicine; Pharmacology; Adverse effect; Immunology; Antibiotics; Internal medicine; Microbiology; Anesthesia; Biology","score_opus":0.02216539482929658,"score_gpt":0.3239563872213173,"score_spread":0.30179099239202073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4379093637","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0023169452,0.99510986,0.00031178392,0.00017420901,0.00030527342,0.0010224911,0.0006432663,0.000050607032,0.00006557995],"genre_scores_gemma":[0.0029157666,0.99480456,0.000024207646,0.000034040902,0.000032186865,0.00021877409,0.0014333229,0.000021642467,0.00051549065],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9978936,0.0006504817,0.0009058941,0.0002558863,0.000029802788,0.00026437786],"domain_scores_gemma":[0.9981435,0.00071242376,0.0005528542,0.00031193616,0.0002588267,0.00002048822],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004844481,0.00022005623,0.001334891,0.0006055985,0.0000683627,0.0000036759668,0.0001589263,0.000754166,0.000098271026],"category_scores_gemma":[0.0006981035,0.00020258359,0.00024341629,0.00044367628,0.0002402299,0.000051810108,0.00011856074,0.00024596218,0.00043925966],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029926593,0.00013866219,0.000010721529,0.006582557,0.0021009124,0.000003332006,0.00031384613,0.000004293257,0.2497874,0.028962396,0.008990899,0.7028057],"study_design_scores_gemma":[0.00048725083,0.00025069626,0.0000837061,0.0014110683,0.00069852895,0.000053068583,0.000015645326,9.953427e-7,0.011141877,0.00031835597,0.9853781,0.0001607203],"about_ca_topic_score_codex":0.000032206517,"about_ca_topic_score_gemma":0.000011528776,"teacher_disagreement_score":0.9763872,"about_ca_system_score_codex":0.000061898245,"about_ca_system_score_gemma":0.00021237672,"threshold_uncertainty_score":0.8261119},"labels":[],"label_agreement":null},{"id":"W4380989649","doi":"10.1016/j.jmii.2023.06.002","title":"Implication of myddosome complex genetic variants in outcome severity of COVID-19 patients","year":2023,"lang":"en","type":"article","venue":"Journal of Microbiology Immunology and Infection","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Consejo Nacional de Ciencia y Tecnología","keywords":"Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Outcome (game theory); Medicine; Internal medicine; Virology; Mathematics; Outbreak; Disease","score_opus":0.021087964959449694,"score_gpt":0.2818935616104574,"score_spread":0.2608055966510077,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4380989649","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99783576,0.00078729866,0.00015776689,0.00028010615,0.0006804827,0.00018840522,0.000022142096,0.000015593392,0.000032473243],"genre_scores_gemma":[0.9986323,0.001055253,0.00004860835,0.000065051216,0.000012796722,0.000004696418,0.00012163097,0.000008096394,0.00005155783],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.997707,0.0006781029,0.00120376,0.00015553868,0.000020688982,0.00023489332],"domain_scores_gemma":[0.9981872,0.0002754371,0.0011123365,0.0001729236,0.0002345857,0.000017536086],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008507883,0.00014722538,0.0005637779,0.0008102055,0.0000899121,0.0000026162134,0.00014457491,0.00048412243,0.000110238434],"category_scores_gemma":[0.0005281155,0.00013209558,0.000113626316,0.0003706968,0.0004140679,0.00014717733,0.000087914144,0.0003508565,0.000034650948],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00060179434,0.00014166208,0.30575144,0.000047799476,0.00015507145,0.0000018207979,0.00027270144,0.00002362686,0.69086146,0.00008415334,0.0002810109,0.0017774659],"study_design_scores_gemma":[0.0028049233,0.0007771416,0.9085423,0.000025661655,0.000043500433,0.00042255418,0.00006803863,0.0000031964012,0.08417057,0.00037572772,0.00266786,0.00009852632],"about_ca_topic_score_codex":0.00012957082,"about_ca_topic_score_gemma":0.000016837721,"teacher_disagreement_score":0.6066909,"about_ca_system_score_codex":0.00008104643,"about_ca_system_score_gemma":0.0001222799,"threshold_uncertainty_score":0.5386701},"labels":[],"label_agreement":null},{"id":"W4381510384","doi":"10.1186/s13054-023-04533-3","title":"Targeted therapy using polymyxin B hemadsorption in patients with sepsis: a post-hoc analysis of the JSEPTIC-DIC study and the EUPHRATES trial","year":2023,"lang":"en","type":"article","venue":"Critical Care","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":47,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"","keywords":"Medicine; Septic shock; Sepsis; Internal medicine; Retrospective cohort study; Cohort; Cohort study","score_opus":0.013911118894845018,"score_gpt":0.27753052162331904,"score_spread":0.263619402728474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381510384","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9976582,0.0012222531,0.0000032587632,0.000282851,0.00012834696,0.00066340633,0.00001553601,0.000016449028,0.00000972585],"genre_scores_gemma":[0.99979544,0.000010587568,0.0000022219072,0.00006382203,0.000007373544,0.000029963408,0.00006716725,0.000007151946,0.000016296672],"study_design_codex":"randomized_trial","study_design_gemma":"observational","domain_scores_codex":[0.99861586,0.00076370063,0.00024638648,0.0001461974,0.000063347754,0.0001645257],"domain_scores_gemma":[0.9991664,0.00039179166,0.00005108357,0.00020636007,0.0001772862,0.00000706245],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003016614,0.00009614177,0.0002651156,0.00018492287,0.00014906004,0.000017213384,0.00010130732,0.00008677413,0.000047646336],"category_scores_gemma":[0.00030096466,0.00004871115,0.00008713469,0.0007717248,0.0002892457,0.0000629936,0.000049095364,0.00013204379,0.000004866074],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.43266857,0.001533506,0.3424733,0.00012086078,0.0041718483,0.0000069571024,0.085306905,0.00021175208,0.121497855,0.0012818817,0.000058970596,0.0106676025],"study_design_scores_gemma":[0.07479036,0.0029246109,0.8787663,0.000055133238,0.0011622602,7.5024116e-7,0.032804165,0.00025660996,0.008956553,0.00006461024,0.0000260763,0.00019256305],"about_ca_topic_score_codex":0.00011718138,"about_ca_topic_score_gemma":0.00005735047,"teacher_disagreement_score":0.536293,"about_ca_system_score_codex":0.000021530146,"about_ca_system_score_gemma":0.00003916196,"threshold_uncertainty_score":0.1986383},"labels":[],"label_agreement":null},{"id":"W4381612093","doi":"10.3892/mco.2023.2656","title":"Toll‑like receptor 3 ligands for breast cancer therapies (Review)","year":2023,"lang":"en","type":"review","venue":"Molecular and Clinical Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":11,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"Wilfrid Laurier University","keywords":"Breast cancer; Cancer; TLR3; Medicine; Toll-like receptor; Immunotherapy; Cancer research; Immune system; Immunology; Innate immune system; Internal medicine","score_opus":0.07855815672911481,"score_gpt":0.44553356843379843,"score_spread":0.3669754117046836,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4381612093","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006238357,0.9939071,0.000035050452,0.0016308794,0.002416357,0.0014786067,0.00027056874,0.00008710868,0.00011192864],"genre_scores_gemma":[0.0000052747387,0.9926216,0.000027092332,0.001470172,0.00017337981,0.0008551343,0.00063647405,0.0000738971,0.0041369875],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966628,0.0007098292,0.0015524646,0.00059527706,0.000040649058,0.00043897764],"domain_scores_gemma":[0.99709463,0.0016845593,0.0006622871,0.00038427243,0.00012477195,0.00004947485],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015304645,0.00042495,0.0029848388,0.000118718315,0.00014032218,0.000011559129,0.0003221112,0.0016088419,0.00048654678],"category_scores_gemma":[0.0003289601,0.00031027157,0.0011551562,0.00017828951,0.0003087182,0.00003811637,0.0001555852,0.000715103,0.000686119],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014485455,0.00009392833,0.0000019021805,0.006495105,0.0016508338,0.00001106083,0.000013495808,1.542713e-8,0.00011745097,0.00015418805,0.031651992,0.9596652],"study_design_scores_gemma":[0.00094768923,0.000582315,0.000016586377,0.008294076,0.0020696516,0.000116245865,0.000012101328,2.1259376e-7,0.000035833313,0.00003846881,0.9875457,0.00034108167],"about_ca_topic_score_codex":0.000019032226,"about_ca_topic_score_gemma":0.00001484898,"teacher_disagreement_score":0.95932406,"about_ca_system_score_codex":0.0000800267,"about_ca_system_score_gemma":0.0006965346,"threshold_uncertainty_score":0.9999349},"labels":[],"label_agreement":null},{"id":"W4382047042","doi":"10.1007/978-1-0716-3338-0_1","title":"Bacterial Binding, Phagocytosis, and Killing Capacity: Measurements Using Colony Forming Units","year":2023,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University","funders":"","keywords":"Phagocytosis; Opsonin; Colony-forming unit; Bacterial colony; Microbiology; Bacteria; Immunofluorescence; Biology; Phagocyte; Chemistry; Immunology; Antibody; Genetics","score_opus":0.10611573929605823,"score_gpt":0.38248104058017834,"score_spread":0.2763653012841201,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382047042","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91644657,0.0006485625,0.081535086,0.000050623294,0.00093873846,0.00021546829,0.000006320418,0.000062880354,0.00009572602],"genre_scores_gemma":[0.7387445,0.00040026775,0.25938645,0.00026458132,0.00009290289,0.000105625004,0.0005180315,0.0000927439,0.00039489896],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9967513,0.002061452,0.0003782559,0.00031498342,0.000025907917,0.00046811686],"domain_scores_gemma":[0.99934864,0.00024479412,0.00013263866,0.00018985936,0.00006632389,0.00001772784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024607682,0.00018208715,0.00034052055,0.00047633075,0.00017147181,0.000015048491,0.0001440924,0.00040119374,0.000048840986],"category_scores_gemma":[0.00059260445,0.00017855813,0.000044859473,0.00056142727,0.0001668051,0.00006877358,0.00014804135,0.0002470391,0.000037201364],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010225309,0.000010318329,0.001870931,0.000014319601,0.00008591288,0.000006372253,0.0003050103,0.000011869817,0.9861647,0.0003297602,0.000011424506,0.011087131],"study_design_scores_gemma":[0.001016226,0.00010318162,0.00041950133,0.000045150613,0.00003321623,0.000047801324,0.0001641042,0.00015463636,0.99025023,0.0004547633,0.007115604,0.00019559862],"about_ca_topic_score_codex":0.0001053725,"about_ca_topic_score_gemma":0.000009650004,"teacher_disagreement_score":0.17785136,"about_ca_system_score_codex":0.00006751119,"about_ca_system_score_gemma":0.000062199964,"threshold_uncertainty_score":0.7281389},"labels":[],"label_agreement":null},{"id":"W4382198941","doi":"10.1101/2023.06.27.545921","title":"Paridiprubart inhibits TLR4-dependant NF-κB activation by multiple pathogens","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Sunnybrook Health Science Centre; Canada Research Chairs; Sunnybrook Hospital; University of Toronto","funders":"","keywords":"TLR4; Cytokine storm; HMGB1; ARDS; Innate immune system; Immunology; Inflammation; Lipopolysaccharide; Receptor; Immune system; Biology; Context (archaeology); Proinflammatory cytokine; Pattern recognition receptor; Agonist; Pathogen; Toll-like receptor; Medicine; Lung; Coronavirus disease 2019 (COVID-19); Internal medicine","score_opus":0.015316942980085683,"score_gpt":0.211487014815904,"score_spread":0.19617007183581833,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382198941","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908649,0.001822142,0.0010538725,0.0007058073,0.0029044505,0.0010334672,0.00055298855,0.0010521731,0.00001023638],"genre_scores_gemma":[0.9980508,0.00050508877,0.00020786058,0.00017597117,0.00020526732,0.00034285113,0.00003438077,0.000193221,0.00028454018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9964754,0.00052214134,0.0008840524,0.001115924,0.00016269328,0.00083981844],"domain_scores_gemma":[0.99724406,0.0002716496,0.0006655,0.0013096342,0.00042683326,0.00008229658],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009378643,0.00070495805,0.00072868954,0.0004208555,0.0004122762,0.00013696354,0.0005594487,0.0015140728,0.00019015031],"category_scores_gemma":[0.0006872441,0.00075256516,0.0002516548,0.00043971633,0.0001607775,0.00027448413,0.0006367786,0.0013444682,0.002490507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017622473,0.00012763416,0.0016632547,0.00015123187,0.00032224396,0.000014913975,0.00002418906,0.000030188468,0.9880418,0.00014748728,0.00929288,0.000007930094],"study_design_scores_gemma":[0.00095275947,0.00006447198,0.019359196,0.00034160342,0.00009590772,4.9791968e-8,0.000006613318,0.000046334655,0.9199441,0.0000024898698,0.058429122,0.00075732765],"about_ca_topic_score_codex":0.0001584535,"about_ca_topic_score_gemma":0.000004232454,"teacher_disagreement_score":0.068097696,"about_ca_system_score_codex":0.0003067646,"about_ca_system_score_gemma":0.0005074908,"threshold_uncertainty_score":0.99978215},"labels":[],"label_agreement":null},{"id":"W4382933746","doi":"10.1016/j.dci.2023.104767","title":"Expression of Interleukin-1β protein in vitro, ex vivo and in vivo salmonid models","year":2023,"lang":"en","type":"article","venue":"Developmental & Comparative Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland; University of Waterloo","funders":"","keywords":"Ex vivo; Biology; In vivo; Cell biology; In vitro; Interleukin; Immunology; Cytokine; Genetics","score_opus":0.02846877920638302,"score_gpt":0.266768166761845,"score_spread":0.23829938755546198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4382933746","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99665564,0.0010219758,0.000041045692,0.00007917696,0.00017062803,0.00056340225,0.000012842167,0.00004980933,0.0014054531],"genre_scores_gemma":[0.9979618,0.00010196226,0.0003194968,0.000018508705,0.0000034766076,0.0001451198,0.00007898896,0.000013733944,0.0013568874],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99800926,0.00048275935,0.00068818347,0.00034855815,0.00004597414,0.00042527536],"domain_scores_gemma":[0.99943805,0.00015967511,0.00018249055,0.0001601969,0.000047392245,0.000012184691],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035286817,0.000243985,0.00056621234,0.0007046462,0.00007667182,0.000008660834,0.00022578286,0.00026205677,0.00019526554],"category_scores_gemma":[0.000033050248,0.00023287142,0.000042970456,0.00047422963,0.0003307508,0.00028385318,0.00030346823,0.00034316076,0.00018252007],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023450444,0.00010139079,0.00083142315,0.00001868963,0.000054681244,0.000014950491,0.007558002,0.000024339404,0.9878511,0.00029530193,0.00019776121,0.0007073581],"study_design_scores_gemma":[0.0020565619,0.00011664502,0.018990293,0.00017723565,0.0000029499306,0.000041102066,0.0036899697,0.00008648957,0.9727146,0.0004695273,0.0014309431,0.00022364974],"about_ca_topic_score_codex":0.00015046769,"about_ca_topic_score_gemma":0.00009089883,"teacher_disagreement_score":0.01815887,"about_ca_system_score_codex":0.00014649311,"about_ca_system_score_gemma":0.00011675979,"threshold_uncertainty_score":0.9496221},"labels":[],"label_agreement":null},{"id":"W4383273118","doi":"10.3390/immuno3030017","title":"The Importance of Neutrophils in Osteoarthritis: Current Concepts and Therapeutic Perspectives","year":2023,"lang":"en","type":"article","venue":"Immuno","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Osteoarthritis; Innate immune system; Proinflammatory cytokine; Inflammation; Chemokine; Immune system; Immunology; Neutrophil extracellular traps; Medicine; Acquired immune system; Pathophysiology; Biology; Pathology","score_opus":0.012168052839925407,"score_gpt":0.2868717031694077,"score_spread":0.2747036503294823,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383273118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8361148,0.16289064,0.0000012945225,0.0003816272,0.00026193543,0.00014688156,0.0000026767934,0.000024321724,0.00017579897],"genre_scores_gemma":[0.9920402,0.007585794,8.1327204e-7,0.00001101269,0.000008836606,0.00002790221,0.000010446857,0.000006379763,0.00030859245],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9992629,0.00017572286,0.0002332749,0.00011569065,0.000022215278,0.00019019008],"domain_scores_gemma":[0.99947655,0.00021225747,0.00008434349,0.00018470059,0.000038315873,0.0000038278554],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030576592,0.00007824807,0.00013296807,0.000069179856,0.0001225756,0.000010032264,0.00011072712,0.000058460057,0.00003037714],"category_scores_gemma":[0.000055001892,0.00005712351,0.000036996953,0.00017220147,0.0002909851,0.00005238943,0.000047252724,0.0001551741,0.00008782071],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004839161,0.000040867104,0.007336429,0.000018057435,0.00007296952,0.0000040004998,0.007882094,0.0000034702398,0.7813555,0.011785525,0.00020773892,0.19080944],"study_design_scores_gemma":[0.0040480243,0.0005259922,0.7719521,0.0002046201,0.000026509513,0.00005215706,0.016135553,0.000013811787,0.12529847,0.0031435508,0.07828445,0.00031476922],"about_ca_topic_score_codex":0.000013761821,"about_ca_topic_score_gemma":0.000014824901,"teacher_disagreement_score":0.76461565,"about_ca_system_score_codex":0.000015610432,"about_ca_system_score_gemma":0.000032798456,"threshold_uncertainty_score":0.23294291},"labels":[],"label_agreement":null},{"id":"W4383533700","doi":"10.3389/fimmu.2023.1171212","title":"Immune responses in the uterine mucosa: clues for vaccine development in pigs","year":2023,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada; Mitacs; Innovation Saskatchewan; Innovation, Science and Economic Development Canada; Ministry of Agriculture - Saskatchewan","keywords":"Immune system; Immunity; Uterus; Biology; Fetus; Offspring; Immunology; Uterine horns; Immunization; Pregnancy; Female Reproductive Tract; Physiology; Endocrinology","score_opus":0.03471453534731704,"score_gpt":0.315163325859339,"score_spread":0.28044879051202193,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383533700","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00368929,0.9897194,0.00016695456,0.0002618398,0.0034641644,0.0025321138,0.000034989054,0.00007187649,0.000059400532],"genre_scores_gemma":[0.00022108601,0.9916387,0.0005523218,0.000049060593,0.00004073902,0.002563214,0.0012700033,0.00008686179,0.003578006],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9937017,0.002374962,0.0022076205,0.00065421924,0.000057310852,0.0010042186],"domain_scores_gemma":[0.9972268,0.0013557317,0.00055729254,0.00080011645,0.000051128678,0.0000089332925],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0029041439,0.00064707536,0.0025709183,0.0024214035,0.00015602831,0.000024709176,0.0012543645,0.001321834,0.00005310869],"category_scores_gemma":[0.0008398823,0.0004933709,0.00034019208,0.0011087573,0.00021311847,0.00013347126,0.00030977605,0.0013286831,0.00028790502],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025798148,0.00029902067,0.0002164663,0.0036685227,0.00095548923,0.00012720574,0.0033615704,0.0000019513604,0.00038859513,0.00045378157,0.0072567197,0.98069084],"study_design_scores_gemma":[0.0024017652,0.00020125732,0.0026802022,0.0036391579,0.00007670346,0.00012118464,0.0008416841,0.000001478743,0.00015906901,0.00021382989,0.98917204,0.00049162953],"about_ca_topic_score_codex":0.00013505983,"about_ca_topic_score_gemma":0.00025919368,"teacher_disagreement_score":0.9819153,"about_ca_system_score_codex":0.0005183973,"about_ca_system_score_gemma":0.00063220755,"threshold_uncertainty_score":0.99997467},"labels":[],"label_agreement":null},{"id":"W4383736226","doi":"10.3390/vetsci10070445","title":"Early-Life Exposure to Lipopolysaccharide Induces Persistent Changes in Gene Expression Profiles in the Liver and Spleen of Female FVB/N Mice","year":2023,"lang":"en","type":"article","venue":"Veterinary Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Alberta Prion Research Institute; Alberta Livestock and Meat Agency; University of Alberta","keywords":"TLR2; Chemokine; Spleen; TLR4; Cytokine; Biology; CXCL5; Immunology; Lipopolysaccharide; Endocrinology; Internal medicine; Medicine; Immune system","score_opus":0.05887112188372579,"score_gpt":0.27785440189155425,"score_spread":0.21898328000782846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4383736226","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971128,0.0017059165,6.2772716e-7,0.0007676923,0.00012329963,0.00022998068,0.0000042285587,0.00001275629,0.000042714022],"genre_scores_gemma":[0.9994265,0.0002836471,0.000056246015,0.00006907535,0.00001290606,0.000039891755,0.0000047993526,0.0000026676828,0.000104286344],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991098,0.0002709852,0.00016049466,0.0001942168,0.00005749551,0.00020698745],"domain_scores_gemma":[0.9996699,0.00013902404,0.00005899527,0.000107522515,0.000014245263,0.000010275067],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00082130753,0.000079429585,0.00012449117,0.00030127488,0.00012373136,0.000018113085,0.00026129844,0.00007155427,0.000026909305],"category_scores_gemma":[0.00007923051,0.000052839147,0.000022815993,0.00036895167,0.00018599525,0.00015277462,0.00013669938,0.000081101534,0.000034525074],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011418683,0.000019636167,0.0054395297,0.000017250366,0.0000040540735,0.000009675436,0.012258266,0.0000143919415,0.98065424,0.00001603073,0.000036992664,0.0014157338],"study_design_scores_gemma":[0.00025908925,0.0019001483,0.34440926,0.00012324807,0.0000038818084,0.0000381068,0.01232546,0.000012523568,0.6404322,0.0000076172482,0.00038441663,0.00010408815],"about_ca_topic_score_codex":0.00028881978,"about_ca_topic_score_gemma":0.000027068803,"teacher_disagreement_score":0.3402221,"about_ca_system_score_codex":0.000006890001,"about_ca_system_score_gemma":0.000029633147,"threshold_uncertainty_score":0.21547179},"labels":[],"label_agreement":null},{"id":"W4385344549","doi":"10.1038/s41598-023-39210-6","title":"Adjuvant effects of combination monophosphoryl lipid A and poly I:C on antigen-specific immune responses and protective efficacy of influenza vaccines","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institutes of Health; National Institute of Allergy and Infectious Diseases; Ministry of Science and ICT, South Korea; National Research Foundation of Korea; Jeju National University; National Research Foundation","keywords":"Adjuvant; Immune system; Lipid A; Antigen; Immunology; Medicine; Influenza vaccine; Antibody response; Vaccine adjuvant; Vaccination; Lipopolysaccharide","score_opus":0.010702183583924094,"score_gpt":0.24696522286809539,"score_spread":0.2362630392841713,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385344549","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9883896,0.00871489,0.000012890348,0.000057833968,0.0019376357,0.0007886928,0.000002392464,0.00005550782,0.000040525734],"genre_scores_gemma":[0.998939,0.00030850683,0.00001355984,0.00000458049,0.0000074130103,0.000033841054,0.000035310873,0.000012327499,0.00064546167],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837273,0.0002583206,0.0006231251,0.00043206697,0.00009673424,0.0002170237],"domain_scores_gemma":[0.998327,0.00046411614,0.00052414817,0.00047636128,0.0001902332,0.000018124267],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014225228,0.00015330492,0.00035107808,0.0005420202,0.00024633989,0.00003070114,0.000075773045,0.00014207541,0.00001385501],"category_scores_gemma":[0.00079903216,0.00013136592,0.00006476266,0.0005639573,0.00037086458,0.0001369911,0.00009653087,0.00012703156,0.000020161377],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010525902,0.00010630532,0.002792594,0.00008505827,0.000060365455,0.00002567844,0.0015388543,0.0000021722565,0.97546536,0.00017339116,0.00035408212,0.01834354],"study_design_scores_gemma":[0.0007532111,0.0003115481,0.32807207,0.00016103037,0.00000978057,0.000045377325,0.00010714396,0.0000038695985,0.66681725,0.00041227552,0.0032218245,0.0000846428],"about_ca_topic_score_codex":0.000037047525,"about_ca_topic_score_gemma":0.0000011482329,"teacher_disagreement_score":0.32527947,"about_ca_system_score_codex":0.000017369808,"about_ca_system_score_gemma":0.00007109792,"threshold_uncertainty_score":0.53569466},"labels":[],"label_agreement":null},{"id":"W4385484256","doi":"10.1016/j.bj.2023.100637","title":"The effects of NOD-like receptors on adaptive immune responses","year":2023,"lang":"en","type":"review","venue":"Biomedical Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Canadian Association of Gastroenterology","keywords":"Immune system; Receptor; Nod; Immune receptor; Immunology; Acquired immune system; Biology; Pattern recognition receptor; Medicine; Immunity; Diabetes mellitus; Endocrinology; Genetics","score_opus":0.030040644110021025,"score_gpt":0.3147692799696931,"score_spread":0.2847286358596721,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385484256","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007626832,0.9877353,0.000027941815,0.00014281494,0.011463699,0.000438744,0.000011329715,0.000042548974,0.000061389124],"genre_scores_gemma":[0.000020096159,0.9911171,0.000008168815,0.000019626907,0.00025325228,0.00004174119,0.000077619094,0.000048914655,0.008413446],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99511606,0.0026617504,0.0013135774,0.00022863313,0.00019042433,0.0004895691],"domain_scores_gemma":[0.99141973,0.0069492897,0.0010810248,0.00039132027,0.0001034942,0.000055164146],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0020535407,0.00037167425,0.0012889925,0.000516587,0.0005293357,0.000030690313,0.0007256442,0.00086533744,0.00013726582],"category_scores_gemma":[0.002636907,0.0001971233,0.0008120384,0.00048269483,0.00072019704,0.00004752211,0.00014981376,0.0015911146,0.0017480747],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006529074,0.00007480921,9.989583e-8,0.0013383516,0.0012273294,0.00006071753,0.00008445002,7.4340774e-9,0.0009217099,0.00018145907,0.030140625,0.96531755],"study_design_scores_gemma":[0.00055797247,0.0011547054,0.000014069001,0.015359251,0.0003870249,0.00046698656,0.000052176285,9.188132e-8,0.00043561112,0.000052248088,0.9813293,0.00019055641],"about_ca_topic_score_codex":0.0000066918456,"about_ca_topic_score_gemma":4.5241396e-7,"teacher_disagreement_score":0.965127,"about_ca_system_score_codex":0.00014016368,"about_ca_system_score_gemma":0.0007432456,"threshold_uncertainty_score":0.99902916},"labels":[],"label_agreement":null},{"id":"W4385488201","doi":"10.1101/2023.07.31.549036","title":"Comparative Analysis of Methods to Reduce Activation Signature Gene Expression in PBMCs","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital; Université de Montréal","funders":"Courtois Foundation; Centre Hospitalier Universitaire de Québec; Université Laval; Schlumberger Foundation; Fonds de Recherche du Québec - Santé; Michael J. Fox Foundation for Parkinson's Research","keywords":"Transcriptome; Peripheral blood mononuclear cell; Ex vivo; Gene expression; Gene expression profiling; Biology; Gene signature; Gene; Transcription (linguistics); In vivo; Regulation of gene expression; Cell biology; Computational biology; In vitro; Genetics","score_opus":0.036295769382505526,"score_gpt":0.31630771132546665,"score_spread":0.28001194194296114,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4385488201","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98285216,0.0010704476,0.014145709,0.00014754909,0.0007944073,0.00072762603,0.00010152452,0.00015489428,0.0000056632243],"genre_scores_gemma":[0.98636353,0.000117044474,0.013153696,0.000043977067,0.00004378338,0.0001992187,0.000011184216,0.00003941574,0.000028144921],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9968957,0.0011232331,0.00079112826,0.00073270296,0.000085958956,0.00037130844],"domain_scores_gemma":[0.99763113,0.00035655397,0.00061527715,0.0009466835,0.00041010056,0.000040257462],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013175824,0.00038711342,0.0010756226,0.0017872687,0.000092222115,0.00003074802,0.00044572554,0.0010039543,0.000070635884],"category_scores_gemma":[0.00045538362,0.00039480388,0.00022764153,0.0021906518,0.00007794419,0.0001290307,0.0004179165,0.0008570688,0.00007718746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033806803,0.000090347945,0.00064988923,0.00006838491,0.0009704096,0.000002490628,0.00017079448,0.0026437861,0.9946444,0.00006111999,0.00035507395,0.000005247946],"study_design_scores_gemma":[0.0003073108,0.00003810364,0.16648933,0.00027433422,0.0002902179,2.5310067e-9,0.000018812625,0.00011492925,0.8310831,0.0000011034514,0.0010724618,0.00031028586],"about_ca_topic_score_codex":0.00008787061,"about_ca_topic_score_gemma":0.0000043660366,"teacher_disagreement_score":0.16583945,"about_ca_system_score_codex":0.0002189359,"about_ca_system_score_gemma":0.0002915938,"threshold_uncertainty_score":0.9998504},"labels":[],"label_agreement":null},{"id":"W4386003096","doi":"10.1016/j.bj.2023.100655","title":"Nod-like receptors in inflammatory arthritis","year":2023,"lang":"en","type":"review","venue":"Biomedical Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":19,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"Canadian Institutes of Health Research; Krembil Foundation; Arthritis Society","keywords":"Nod; Arthritis; Receptor; Inflammatory arthritis; Medicine; Immunology; Inflammation; Internal medicine; Diabetes mellitus; Endocrinology","score_opus":0.031736312029669714,"score_gpt":0.3062120283873082,"score_spread":0.2744757163576385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386003096","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00007425488,0.9906227,0.00001570167,0.00010789854,0.008689063,0.00028469105,0.000009910171,0.00008099692,0.00011478814],"genre_scores_gemma":[0.0000026416237,0.99550605,0.00001680459,0.000034983328,0.00043599575,0.000041667496,0.00035103757,0.000059785696,0.0035510275],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962558,0.0010602678,0.0016319894,0.00029262938,0.00013693335,0.00062234007],"domain_scores_gemma":[0.9986219,0.00039829314,0.0005883352,0.00025732646,0.000049741804,0.000084421124],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001667946,0.0003818931,0.0013828521,0.0012025681,0.00017753338,0.000058899666,0.00051069073,0.0013975826,0.0016728557],"category_scores_gemma":[0.00042577618,0.0002943737,0.00053975574,0.00058850856,0.00031706403,0.00012391426,0.0001485041,0.0021005014,0.0091722915],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000024577417,0.000043921576,0.000002547938,0.0009764407,0.00023586252,0.00030552887,0.0000757677,1.636636e-8,0.000047930254,0.000035008194,0.04532379,0.9529286],"study_design_scores_gemma":[0.00071251014,0.00009292497,0.000011494807,0.016962215,0.00008535915,0.002145533,0.000046022178,1.2879356e-7,0.000007329078,0.000039409257,0.97960514,0.00029194314],"about_ca_topic_score_codex":0.000008849023,"about_ca_topic_score_gemma":0.000005846253,"teacher_disagreement_score":0.95263666,"about_ca_system_score_codex":0.00023506422,"about_ca_system_score_gemma":0.0009446969,"threshold_uncertainty_score":0.9999508},"labels":[],"label_agreement":null},{"id":"W4386019255","doi":"10.1007/978-1-0716-3366-3_2","title":"Development of Optimal Virtual Screening Strategies to Identify Novel Toll-Like Receptor Ligands Using the DockBox Suite","year":2023,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Ottawa","funders":"","keywords":"Virtual screening; Toll; Suite; Toll-like receptor; Computational biology; Computer science; Receptor; Set (abstract data type); Medicine; Biology; Bioinformatics; Immunology; Innate immune system; Drug discovery; Geography; Genetics","score_opus":0.052508092693867435,"score_gpt":0.41640780639367625,"score_spread":0.36389971369980884,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386019255","genre_codex":"methods","genre_gemma":"methods","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"methods","genre_consensus":"methods","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.497882,0.00019457209,0.50127363,0.000077368924,0.00036651452,0.00015194397,0.0000032760577,0.000025251005,0.000025463514],"genre_scores_gemma":[0.16624364,0.000023311179,0.8330628,0.0001578673,0.000022282125,0.00005994833,0.00012724774,0.000029213168,0.00027367676],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777776,0.00084580615,0.0006013424,0.0003069681,0.000039147984,0.00042896986],"domain_scores_gemma":[0.999094,0.00036387323,0.00015598154,0.00029904296,0.000071481845,0.000015623486],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002867957,0.00018658514,0.00034927853,0.00040016795,0.00016402114,0.00001896551,0.00036308065,0.0003066793,0.000056645113],"category_scores_gemma":[0.00032669638,0.00014692401,0.000090477675,0.0006062457,0.00016993008,0.000061329105,0.00032998828,0.0002650504,0.000050253737],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019281336,0.000019480172,0.00008075272,0.000007557483,0.00012781685,0.0000027992298,0.0022599457,0.0014776614,0.97604376,0.001646674,0.000026113417,0.018114602],"study_design_scores_gemma":[0.00052174507,0.00010886851,0.0011501737,0.00004000216,0.000016851765,0.000018291668,0.002830626,0.00017431025,0.981722,0.00007322642,0.0131669175,0.00017700496],"about_ca_topic_score_codex":0.00003837009,"about_ca_topic_score_gemma":0.000008275164,"teacher_disagreement_score":0.3317892,"about_ca_system_score_codex":0.000036895846,"about_ca_system_score_gemma":0.0001609421,"threshold_uncertainty_score":0.59913874},"labels":[],"label_agreement":null},{"id":"W4386306298","doi":"10.1007/s00223-023-01126-8","title":"Association of Immune Cell Subsets with Incident Hip Fracture: The Cardiovascular Health Study","year":2023,"lang":"en","type":"article","venue":"Calcified Tissue International","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba","funders":"National Institute of Neurological Disorders and Stroke; National Heart, Lung, and Blood Institute; National Institute on Aging; National Institutes of Health; Rheumatology Research Foundation; U.S. Department of Veterans Affairs","keywords":"Hazard ratio; Medicine; Hip fracture; Internal medicine; Incidence (geometry); Immune system; Prospective cohort study; Proportional hazards model; Confidence interval; Cohort study; Cohort; Immunology; Peripheral blood mononuclear cell; Osteoporosis; Biology","score_opus":0.011875929007906832,"score_gpt":0.26419363208274166,"score_spread":0.2523177030748348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386306298","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99030375,0.0026363134,0.0005243099,0.004107463,0.0010710536,0.0006558417,0.000017276321,0.00007686928,0.0006071347],"genre_scores_gemma":[0.99288815,0.00012365938,0.0000072889047,0.00009106706,0.000055798315,0.000053933043,0.0002833166,0.000013732681,0.006483029],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99858475,0.00040234343,0.00041031407,0.00018336017,0.00020646147,0.00021278282],"domain_scores_gemma":[0.99891984,0.00021748159,0.00033563067,0.00031268588,0.00020314178,0.000011197713],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013504644,0.00012008484,0.0002538872,0.0001416322,0.00015188692,0.000019021178,0.00030881667,0.00010866213,0.00024938403],"category_scores_gemma":[0.00011714635,0.00008385443,0.00011720152,0.00021933414,0.000043923752,0.00008979417,0.00007084149,0.00023630193,0.0005400637],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003742237,0.0023351435,0.10070141,0.00022023963,0.021770842,0.00015440294,0.054343566,0.009682501,0.5883834,0.0015732554,0.13936715,0.077725895],"study_design_scores_gemma":[0.0034406313,0.00046880686,0.40404448,0.00004046694,0.00013638662,0.00002669479,0.0028201628,0.000029620685,0.29520047,0.000070698385,0.29350168,0.00021991246],"about_ca_topic_score_codex":0.0004929121,"about_ca_topic_score_gemma":0.000026579735,"teacher_disagreement_score":0.30334306,"about_ca_system_score_codex":0.00015889897,"about_ca_system_score_gemma":0.00009387392,"threshold_uncertainty_score":0.69416064},"labels":[],"label_agreement":null},{"id":"W4386503464","doi":"10.1080/14787210.2023.2256979","title":"Transcriptomics reveals shared immunosuppressive landscapes in ventilator-associated lower respiratory tract infections (VA-LRTI) patients","year":2023,"lang":"en","type":"article","venue":"Expert Review of Anti-infective Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Canadian Institutes of Health Research; Genome Canada; Dalhousie Medical Research Foundation","keywords":"Ventilator-associated pneumonia; Pneumonia; Respiratory tract; Medicine; Respiratory tract infections; Respiratory system; Immune system; Immunology; Lower respiratory tract infection; Internal medicine","score_opus":0.015226116764571293,"score_gpt":0.29390763799430686,"score_spread":0.27868152122973555,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386503464","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9184501,0.07923662,0.000006919061,0.00011432353,0.0008238287,0.00096687477,0.000051862797,0.000117619835,0.000231829],"genre_scores_gemma":[0.88735235,0.11159285,0.0000023158811,0.00041372952,0.000025072422,0.000160961,0.00035755432,0.0000360154,0.0000591424],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9973433,0.0009418707,0.0008673316,0.00033927112,0.000097310134,0.00041092915],"domain_scores_gemma":[0.99857414,0.00027881374,0.0004554849,0.0003793455,0.0002914408,0.000020764965],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00087127276,0.00030692224,0.0008182383,0.00037257042,0.0001605643,0.000014965037,0.00023218377,0.00028664054,0.00065513345],"category_scores_gemma":[0.00038152884,0.00026493694,0.00038888652,0.00081204966,0.000102531485,0.0003512787,0.00003630437,0.00034183863,0.0002845034],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00043724393,0.0025839228,0.092253454,0.00029693398,0.0006037537,0.000008513189,0.002254639,0.0000063183943,0.88034487,0.00006966353,0.011208963,0.009931754],"study_design_scores_gemma":[0.0044200863,0.0011086183,0.8336028,0.0036319476,0.00003357618,0.0000037012844,0.00007877564,0.000002255929,0.10625412,0.000062986204,0.050380785,0.0004203815],"about_ca_topic_score_codex":0.000063023384,"about_ca_topic_score_gemma":0.000007148511,"teacher_disagreement_score":0.7740907,"about_ca_system_score_codex":0.00011253331,"about_ca_system_score_gemma":0.000097437594,"threshold_uncertainty_score":0.9999803},"labels":[],"label_agreement":null},{"id":"W4386526394","doi":"10.1038/s41598-023-41990-w","title":"TNF-α and Poly(I:C) induction of A20 and activation of NF-κB signaling are independent of ABCF1 in human airway epithelial cells","year":2023,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Waterloo; McMaster University","funders":"Canadian Institutes of Health Research","keywords":"NF-κB; NFKB1; Signal transduction; Cell biology; Tumor necrosis factor alpha; Airway; Chemistry; Immunology; Biology; Medicine; Gene; Transcription factor; Biochemistry","score_opus":0.014991077160064578,"score_gpt":0.24193958612441305,"score_spread":0.22694850896434848,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386526394","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99846035,0.00017846432,0.000021978689,0.00002806573,0.0010785278,0.00016761918,0.0000028185661,0.000011262963,0.000050925875],"genre_scores_gemma":[0.99924535,0.000014887327,0.000011265565,0.0000012958201,0.000007501895,0.0000039680663,0.000054759486,0.0000050998506,0.000655848],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887717,0.00010651602,0.00057400356,0.00024038646,0.000078238205,0.0001236687],"domain_scores_gemma":[0.9990014,0.000045600606,0.0006290357,0.00020512874,0.00011033593,0.00000849321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001360387,0.000073585674,0.00020785304,0.00047345433,0.00009278651,0.000010014139,0.000041061154,0.00013698882,0.000036523303],"category_scores_gemma":[0.00009401605,0.000069135385,0.000030920524,0.00035976045,0.0002601778,0.00014799843,0.000055109333,0.00009761474,0.000002175046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005393281,0.000032963308,0.0043887203,0.000067111774,0.000018313505,0.0000043915525,0.0013228271,0.00002937229,0.99129325,0.000050405997,0.000097676566,0.002641033],"study_design_scores_gemma":[0.00026875632,0.000051621595,0.029885598,0.00010885438,0.000009626555,0.000018578274,0.00077362166,0.000005064834,0.9679478,0.0006323563,0.00024151754,0.00005664542],"about_ca_topic_score_codex":0.00013622509,"about_ca_topic_score_gemma":0.0000135892415,"teacher_disagreement_score":0.025496878,"about_ca_system_score_codex":0.000014256296,"about_ca_system_score_gemma":0.000049261645,"threshold_uncertainty_score":0.28192595},"labels":[],"label_agreement":null},{"id":"W4386744611","doi":"10.1101/2023.09.13.557392","title":"Adopting orphan receptors: group IX/X transition metals as potential ligands of zebrafish Tlr4 homologs","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; University of Alberta; Cancer Research Institute","keywords":"Zebrafish; TLR4; Biology; Gene knockdown; Homologous chromosome; Receptor; Function (biology); Cell biology; Genetics; Gene","score_opus":0.011606253197284828,"score_gpt":0.21425832569075667,"score_spread":0.20265207249347184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4386744611","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9882606,0.0028322104,0.0024037606,0.00045089202,0.0044424995,0.00080646836,0.00015398514,0.00064211723,0.0000074262243],"genre_scores_gemma":[0.99782103,0.000737549,0.0006506631,0.00011877255,0.00027008686,0.00016864252,0.000021652235,0.00015225234,0.000059354883],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99650985,0.0005267434,0.00116633,0.0009258021,0.00016924097,0.0007020533],"domain_scores_gemma":[0.9973427,0.00014787453,0.00090845855,0.0010350267,0.0004988895,0.00006702797],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0015434518,0.0006324284,0.001016366,0.00065423513,0.00027902878,0.00008859624,0.00062103744,0.0015798282,0.00028461646],"category_scores_gemma":[0.00038766649,0.000685117,0.00045841507,0.00055332953,0.0002907278,0.0002817968,0.00037773346,0.0010852645,0.0007305665],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033502883,0.00015573371,0.00006639039,0.00034712531,0.0007875384,0.000041706156,0.000074577576,0.00010591902,0.99690074,0.00036491264,0.0008067118,0.000013610204],"study_design_scores_gemma":[0.0011752535,0.00026295133,0.0071050837,0.00066895195,0.00042214425,3.2872558e-7,0.00003420186,0.000041571202,0.9831248,0.000007284286,0.006437515,0.00071994675],"about_ca_topic_score_codex":0.00025770417,"about_ca_topic_score_gemma":0.0000032071923,"teacher_disagreement_score":0.013775979,"about_ca_system_score_codex":0.00014831203,"about_ca_system_score_gemma":0.00039235453,"threshold_uncertainty_score":0.99971634},"labels":[],"label_agreement":null},{"id":"W4387300260","doi":"10.1093/rheumatology/kead493","title":"Inhibition of TLR4 signalling to dampen joint inflammation in osteoarthritis","year":2023,"lang":"en","type":"review","venue":"Lara D. Veeken","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"H2020 European Research Council; Dutch Arthritis Society; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; ZonMw; European Commission; Arthritis Society","keywords":"TLR4; Inflammation; Medicine; Pattern recognition receptor; Osteoarthritis; Receptor; Signalling; Innate immune system; HMGB1; Toll-like receptor; Immunology; Immune system; Signal transduction; Cell biology; Biology; Internal medicine; Pathology","score_opus":0.04023589370884667,"score_gpt":0.28807963319149854,"score_spread":0.24784373948265187,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387300260","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0071427245,0.99008995,0.00008774291,0.00005370893,0.00046264843,0.001501675,0.0000538798,0.000093457085,0.00051423616],"genre_scores_gemma":[0.0006983732,0.9957352,0.00004438617,0.000014184861,0.00008999464,0.00027428506,0.0017701675,0.000058637983,0.0013147471],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99741745,0.0005579062,0.0012830492,0.00033753453,0.00006983374,0.00033424332],"domain_scores_gemma":[0.9988532,0.00022331286,0.00049792323,0.00032605388,0.00008074774,0.0000187491],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008412308,0.00030266837,0.0012844041,0.0007990167,0.00006299104,0.000021415442,0.00018001172,0.00065774296,0.00014746949],"category_scores_gemma":[0.00026001726,0.00029597557,0.00028402585,0.00060220045,0.000045668206,0.00015755145,0.00015026281,0.00044480996,0.0032416498],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006889782,0.000026568348,0.0000018470162,0.0046073357,0.000120432844,0.000020577312,0.0005887809,0.000016683445,0.041650895,0.00028972063,0.0004134127,0.95219487],"study_design_scores_gemma":[0.00070276106,0.0002286431,0.00004163589,0.023541793,0.00015241385,0.000030691193,0.00006041268,0.0000012067133,0.01907051,0.00013171803,0.9556499,0.0003883127],"about_ca_topic_score_codex":0.00007401463,"about_ca_topic_score_gemma":0.00008307942,"teacher_disagreement_score":0.9552365,"about_ca_system_score_codex":0.00012158119,"about_ca_system_score_gemma":0.00017427468,"threshold_uncertainty_score":0.9999492},"labels":[],"label_agreement":null},{"id":"W4387409199","doi":"10.1016/j.matt.2023.09.007","title":"A bacterially engineered macrophage sponge as a neutralization decoy to treat bacterial infection","year":2023,"lang":"en","type":"article","venue":"Matter","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"Fundo para o Desenvolvimento das Ciências e da Tecnologia; Science and Technology Development Fund; Science, Technology and Innovation Commission of Shenzhen Municipality; Universidade de Macau; National Natural Science Foundation of China","keywords":"Neutralization; Bacteria; Microbiology; Biology; Pathogen; Decoy; Immune system; Biofilm; Macrophage; Bacterial cell structure; Antibody; Receptor; Cell biology; Immunology; In vitro; Biochemistry","score_opus":0.007348093166815866,"score_gpt":0.23447151553699655,"score_spread":0.22712342237018068,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387409199","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9957228,0.000012390189,0.00018057197,0.0008443004,0.001607513,0.0002864655,0.000012990643,0.00021970588,0.0011132826],"genre_scores_gemma":[0.9811425,0.000017542703,0.000016256039,0.00045947687,0.00013447883,0.00007224388,0.0007553501,0.000029332647,0.017372768],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999106,0.00015556547,0.00023220296,0.00019667338,0.000026074275,0.00028347157],"domain_scores_gemma":[0.99965465,0.000039579892,0.000046024972,0.000201388,0.000037767444,0.000020575048],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00016257273,0.0001458344,0.00015980167,0.00026400868,0.000101532816,0.00005115921,0.00007928893,0.00018416034,0.0077059204],"category_scores_gemma":[0.000043634485,0.00013853624,0.000062647436,0.00027224325,0.000017914736,0.00016108017,0.000051307397,0.0000813596,0.05154335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005309168,0.00001878204,0.0006356183,0.000018959094,0.000025765054,0.000008323597,0.0004912484,0.000023060216,0.9733221,0.000049857983,0.023001442,0.0018739313],"study_design_scores_gemma":[0.0010680204,0.00016178779,0.17642891,0.000025863403,0.000026916905,0.000058305846,0.000014793582,0.000005461318,0.64778703,0.000032073855,0.17418142,0.00020943204],"about_ca_topic_score_codex":0.00013880555,"about_ca_topic_score_gemma":0.000013852609,"teacher_disagreement_score":0.3255351,"about_ca_system_score_codex":0.000043018168,"about_ca_system_score_gemma":0.00002420133,"threshold_uncertainty_score":0.9932012},"labels":[],"label_agreement":null},{"id":"W4387533606","doi":"10.3390/molecules28207023","title":"Naphthaleneoxypropargyl-Containing Piperazine as a Regulator of Effector Immune Cell Populations upon an Aseptic Inflammation","year":2023,"lang":"en","type":"article","venue":"Molecules","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lethbridge College","funders":"","keywords":"Inflammation; Immune system; Cytotoxic T cell; Chemistry; Cadmium chloride; Spleen; CD8; Immunology; Cadmium acetate; Biology; Cadmium; Biochemistry","score_opus":0.014594274046212668,"score_gpt":0.2607132808984264,"score_spread":0.24611900685221372,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387533606","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99733835,0.00074429007,0.00023427678,0.00015603821,0.0002954073,0.00036246458,0.0000110758165,0.00019594366,0.0006621504],"genre_scores_gemma":[0.99736154,0.000027307029,0.00012219987,0.000015757518,0.000032811407,0.000059632264,0.0010338803,0.000030397496,0.0013164711],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99853116,0.00037369825,0.000494967,0.00023606876,0.000067913614,0.00029621352],"domain_scores_gemma":[0.9991414,0.00009817183,0.00023160248,0.00039732523,0.0001089117,0.000022617029],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041746133,0.00018253624,0.00027837412,0.00034437704,0.00019115333,0.00001852433,0.00017084893,0.00020547808,0.00024064751],"category_scores_gemma":[0.00018290553,0.00017544121,0.00011504464,0.00035350138,0.00006596085,0.00022373362,0.00006274189,0.00014481042,0.0012713899],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034193366,0.000042729338,0.0004237463,0.000052314823,0.00004449928,0.000009750116,0.0006156497,0.00034617397,0.9911652,0.001541026,0.0000886382,0.0053283405],"study_design_scores_gemma":[0.0010154989,0.00052452885,0.04617562,0.000074833006,0.000046316836,0.00002619776,0.00020345951,0.00049038,0.9493162,0.0003044593,0.0016265037,0.00019596991],"about_ca_topic_score_codex":0.00013099048,"about_ca_topic_score_gemma":0.000015236629,"teacher_disagreement_score":0.045751877,"about_ca_system_score_codex":0.000034163586,"about_ca_system_score_gemma":0.00006470573,"threshold_uncertainty_score":0.99950624},"labels":[],"label_agreement":null},{"id":"W4387805006","doi":"10.1124/molpharm.123.000740","title":"Synergy between Interleukin-1β, Interferon-γ, and Glucocorticoids to Induce TLR2 Expression Involves NF-κB, STAT1, and the Glucocorticoid Receptor","year":2023,"lang":"en","type":"article","venue":"Molecular Pharmacology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"TLR2; STAT1; STAT3; Janus kinase; Glucocorticoid receptor; Downregulation and upregulation; Glucocorticoid; Receptor; Signal transduction; Chemistry; Endocrinology; Biology; Internal medicine; Medicine; Cell biology; Innate immune system; Biochemistry","score_opus":0.010357507694317822,"score_gpt":0.2669979346571801,"score_spread":0.25664042696286227,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387805006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920344,0.0018987041,0.00059305603,0.003438689,0.00096580444,0.00079687306,0.000011504171,0.0001300828,0.00013089142],"genre_scores_gemma":[0.99667466,0.00036564138,0.00004796911,0.0013197733,0.000064675274,0.0002124728,0.00013068428,0.000037784717,0.0011463675],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9974248,0.0010130631,0.00049595995,0.0004724997,0.00006355558,0.0005301505],"domain_scores_gemma":[0.9989061,0.00052177196,0.00015102205,0.0002862379,0.0000704381,0.00006442886],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062465767,0.00028014247,0.00045952943,0.00030065226,0.00021909871,0.000040957537,0.00029555822,0.00027059807,0.00024016392],"category_scores_gemma":[0.00016343324,0.00021201087,0.0000787916,0.00031748833,0.0004724304,0.0001297035,0.00063810917,0.00043418826,0.0006195614],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00140914,0.000024024837,0.0003522306,0.000032461907,0.00025198428,0.000018325616,0.002156044,0.0000141736855,0.97989494,0.00038818468,0.003711292,0.011747199],"study_design_scores_gemma":[0.00395734,0.00040901246,0.0015168737,0.000047696034,0.00011109671,0.000029008497,0.0005094932,0.000028296472,0.94611233,0.00015590299,0.046880823,0.0002421458],"about_ca_topic_score_codex":0.00005723453,"about_ca_topic_score_gemma":0.0000036042427,"teacher_disagreement_score":0.04316953,"about_ca_system_score_codex":0.000060322203,"about_ca_system_score_gemma":0.00008309439,"threshold_uncertainty_score":0.8645552},"labels":[],"label_agreement":null},{"id":"W4387888500","doi":"10.1186/s12885-023-11509-7","title":"Toll-like receptor 9 (-1237 T/C, -1486 T/C) and the risk of gastric cancer: a meta-analysis of genetic association studies","year":2023,"lang":"en","type":"review","venue":"BMC Cancer","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"International Medical University","keywords":"Medicine; Odds ratio; Meta-analysis; Internal medicine; Confidence interval; Cancer; Surgical oncology; Case-control study; Oncology; Demography","score_opus":0.11959231558070518,"score_gpt":0.36954480042273247,"score_spread":0.24995248484202728,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4387888500","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007102352,0.9972728,0.0000132996565,0.000059478403,0.00048251884,0.00071451627,0.0007132011,0.000017846278,0.000016144173],"genre_scores_gemma":[0.00005821621,0.9922974,0.00002603921,0.000014728412,0.00003873382,0.0009160795,0.0000989606,0.000024667846,0.00652515],"study_design_codex":"meta_analysis","study_design_gemma":"meta_analysis","domain_scores_codex":[0.9962448,0.001967542,0.0011403665,0.00031133695,0.00010122081,0.00023471573],"domain_scores_gemma":[0.99388325,0.0029168415,0.0025381015,0.00038853404,0.00026426534,0.00000902771],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014349651,0.00030855657,0.004122178,0.00048136257,0.000118040356,0.000008671324,0.00022844452,0.00033791232,0.0005143184],"category_scores_gemma":[0.0007093827,0.00017499122,0.002054926,0.0011714255,0.00021055587,0.000035709916,0.00012009474,0.00028340856,0.000037150206],"study_design_candidate":"meta_analysis","study_design_consensus":"meta_analysis","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002317887,0.000026295273,0.00057286123,0.0048958,0.8550178,2.9004244e-7,0.0007721879,0.00013822828,0.000045892502,0.000046147474,0.008035251,0.13021746],"study_design_scores_gemma":[0.00049220794,0.00002829659,0.0003994807,0.000367266,0.54471046,0.0000011568059,0.000106427,0.0000048056627,0.00004560041,0.000010271887,0.45367756,0.00015645556],"about_ca_topic_score_codex":0.0021783856,"about_ca_topic_score_gemma":0.0019848277,"teacher_disagreement_score":0.44564232,"about_ca_system_score_codex":0.00023086055,"about_ca_system_score_gemma":0.00036795123,"threshold_uncertainty_score":0.7135935},"labels":[],"label_agreement":null},{"id":"W4388210594","doi":"10.1159/000534107","title":"Endotoxemia Correlates with Kidney Function and Length of Stay in Critically Ill Patients","year":2023,"lang":"en","type":"article","venue":"Blood Purification","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"","keywords":"Critically ill; Medicine; Intensive care medicine; Renal function; Critical illness; Acute kidney injury; Kidney disease; Internal medicine","score_opus":0.005735671831884961,"score_gpt":0.19925991690775094,"score_spread":0.193524245075866,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388210594","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9986595,0.00020564932,0.000072443436,0.00030711608,0.000115615556,0.0002508962,0.000008126066,0.000046749934,0.00033393202],"genre_scores_gemma":[0.99887216,0.00011043477,0.000036150883,0.00010294679,0.0000054296274,0.000037687423,0.00045415218,0.000008347479,0.0003726992],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993286,0.000112061614,0.000235819,0.00015048387,0.00003377021,0.0001392561],"domain_scores_gemma":[0.99941015,0.00009204308,0.000083057,0.00013864103,0.00026335276,0.0000127690555],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019944705,0.00007745071,0.00011459809,0.0001752831,0.000050654686,0.0000061454903,0.000048137128,0.00012379816,0.00003900349],"category_scores_gemma":[0.0003892171,0.00006704581,0.000014893615,0.00021776627,0.00007537176,0.00012687227,0.00001415713,0.000105188396,0.000096259704],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007952419,0.00028950543,0.18332599,0.00006594291,0.00010878351,0.0000010635656,0.0006962875,0.0000056825647,0.80136466,0.0036534697,0.0008069274,0.008886463],"study_design_scores_gemma":[0.0029227287,0.00047699903,0.716852,0.00006934557,0.00007783033,0.000004956459,0.00032544334,0.00002828792,0.27559602,0.00029573447,0.0032278025,0.00012279724],"about_ca_topic_score_codex":0.000020927251,"about_ca_topic_score_gemma":0.0000032982227,"teacher_disagreement_score":0.53352606,"about_ca_system_score_codex":0.000008896406,"about_ca_system_score_gemma":0.000036337202,"threshold_uncertainty_score":0.27340487},"labels":[],"label_agreement":null},{"id":"W4388234844","doi":"","title":"Toll-like Interleukin -1 Receptor Regulator (TILRR) Protein, a Major Modulator of Inflammation, is Expressed in Normal Human and Macaque Tissues and PBMCs","year":2022,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Regulator; Inflammation; Toll-like receptor; Toll; Receptor; Interleukin-1 receptor; Immunology; Cell biology; Macaque; Biology; Interleukin; Immune system; Neuroscience; Gene; Cytokine; Innate immune system; Biochemistry","score_opus":0.07162644937230792,"score_gpt":0.44160788576396376,"score_spread":0.3699814363916558,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388234844","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9873205,0.01102071,0.000017903056,0.00023878242,0.00023211291,0.0008786107,0.00006800755,0.000021322294,0.00020205285],"genre_scores_gemma":[0.99729425,0.0008673118,0.00007291778,0.00006659546,0.000033799224,0.00017810623,0.000062585605,0.000034051824,0.001390361],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9972661,0.0007251572,0.0011437188,0.00038112528,0.00017298196,0.0003109262],"domain_scores_gemma":[0.9984422,0.00012270085,0.0008332043,0.00037961116,0.00017204344,0.00005025108],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0010862458,0.00027553565,0.00071464706,0.0008909848,0.00036203276,0.00018434315,0.0009347896,0.00017291092,0.008315768],"category_scores_gemma":[0.00013635372,0.00027439196,0.000087036125,0.00041611554,0.00023000974,0.0013711201,0.0011307946,0.00047779773,0.0000075443522],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011107959,0.00010686051,0.03162987,0.00013457284,0.00017336557,0.0000074797467,0.0016774158,0.00001758495,0.95487845,0.00016681243,0.005206668,0.004890102],"study_design_scores_gemma":[0.0016304913,0.00006578357,0.11595054,0.00030027388,0.00003631276,0.000035649256,0.00041924213,0.000021787671,0.85918325,0.00078025507,0.021282807,0.000293619],"about_ca_topic_score_codex":0.00076661847,"about_ca_topic_score_gemma":0.00005879775,"teacher_disagreement_score":0.09569523,"about_ca_system_score_codex":0.00008683731,"about_ca_system_score_gemma":0.00010254077,"threshold_uncertainty_score":0.99997085},"labels":[],"label_agreement":null},{"id":"W4388290310","doi":"10.1016/j.vaccine.2023.10.059","title":"In ovo administration of retinoic acid enhances cell-mediated immune responses against an inactivated H9N2 avian influenza virus vaccine","year":2023,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Animal Health Institute; University of Guelph","funders":"","keywords":"In ovo; Virology; Biology; Virus; Inactivated vaccine; Vaccination; Immune system; Adjuvant; Influenza A virus subtype H5N1; Population; Antibody; Immunogenicity; Immunity; Influenza A virus; Microbiology; Immunology; Medicine; Embryo","score_opus":0.013583778890807663,"score_gpt":0.27376649719119295,"score_spread":0.2601827183003853,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388290310","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9969765,0.0014266702,0.0000063471393,0.00044164914,0.00036899553,0.00037503144,0.00003332696,0.0001764677,0.00019503447],"genre_scores_gemma":[0.99697596,0.00064112176,0.000017394379,0.0001387062,0.000036419427,0.00004732096,0.0010193047,0.000030308698,0.0010934788],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975455,0.0006564949,0.0009542244,0.00034539585,0.00007008123,0.00042832663],"domain_scores_gemma":[0.9986238,0.0003031181,0.00041482822,0.00048640446,0.0001425837,0.00002927063],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00083346426,0.00026447355,0.0004885721,0.00074930466,0.00012803006,0.000015719412,0.00027915463,0.00037105414,0.00044883016],"category_scores_gemma":[0.0005193079,0.00024731673,0.0000779632,0.0011415186,0.000023452,0.0004923219,0.00007772663,0.00034811615,0.0006760786],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008613238,0.00020298135,0.0019788167,0.000044665125,0.000050334995,0.00003124542,0.0007316532,0.000011848175,0.98677903,0.000021797907,0.00048042845,0.0010539618],"study_design_scores_gemma":[0.0028142908,0.00073077856,0.15861076,0.000069296344,0.00001726518,0.000011932173,0.00038439475,0.000028802673,0.8321559,0.000025537684,0.004943887,0.00020715116],"about_ca_topic_score_codex":0.00017563408,"about_ca_topic_score_gemma":0.00014535738,"teacher_disagreement_score":0.15663195,"about_ca_system_score_codex":0.000062187624,"about_ca_system_score_gemma":0.00016293996,"threshold_uncertainty_score":0.9999979},"labels":[],"label_agreement":null},{"id":"W4388528807","doi":"10.1093/jas/skad281.601","title":"PSX-9 Gonadectomy Is Not Correlated with Altered T-Lymphocyte Populations in Senior Labrador Retrievers","year":2023,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"CD8; Lymphocyte; CD3; Flow cytometry; Andrology; Biology; Immunology; Medicine; Immune system","score_opus":0.030507895827981947,"score_gpt":0.28965462027368055,"score_spread":0.2591467244456986,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4388528807","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981605,0.00012973037,0.00002452877,0.0009668519,0.00042904954,0.00007884979,0.0000031570844,0.000018475239,0.0001888688],"genre_scores_gemma":[0.99900234,0.000050999744,0.00012710998,0.000114119575,0.000021307658,8.7867113e-7,0.000003095039,0.0000055600567,0.00067457365],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9989804,0.0000755467,0.00038176245,0.00013983011,0.00012882568,0.00029362593],"domain_scores_gemma":[0.99932116,0.00006999871,0.00028234697,0.00011055126,0.00018620369,0.0000297159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008573803,0.000088539215,0.00017730659,0.0005153878,0.00019657757,0.000031631982,0.00027635915,0.00008567408,0.00016766861],"category_scores_gemma":[0.00021017187,0.00006520103,0.000047902042,0.0017109477,0.00027010462,0.00055934413,0.000044883982,0.00025460034,0.00017711613],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019777615,0.000022222484,0.0033954696,0.0000027625172,0.000015214472,0.00003563014,0.0009498838,0.000052489682,0.9903593,0.00015782945,0.0010990246,0.0019324239],"study_design_scores_gemma":[0.002247903,0.0009349211,0.6076848,0.00009067138,0.0000190285,0.0005223894,0.000563157,0.0003121703,0.38197386,0.000028264463,0.005486741,0.00013611325],"about_ca_topic_score_codex":0.00009483286,"about_ca_topic_score_gemma":0.000020420397,"teacher_disagreement_score":0.60838544,"about_ca_system_score_codex":0.00014999816,"about_ca_system_score_gemma":0.00044997665,"threshold_uncertainty_score":0.26588207},"labels":[],"label_agreement":null},{"id":"W4389163312","doi":"10.1101/2023.11.30.23299243","title":"Multi-Omic blood analysis reveals differences in innate inflammatory sensitivity between species","year":2023,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Pacific Northwest National Laboratory; Biological and Environmental Research; Advanced Research Projects Agency; National Institutes of Health; Open Medicine Foundation; National Institute of General Medical Sciences; Battelle; U.S. Department of Energy","keywords":"Lipopolysaccharide; Transcriptome; Biology; Sepsis; Inflammation; Innate immune system; Gene; Autophagy; Baboon; Proteome; Apoptosis; Cell biology; Immunology; Gene expression; Microbiology; Genetics; Ecology; Immune system","score_opus":0.047338194274185105,"score_gpt":0.2671219796073644,"score_spread":0.21978378533317927,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389163312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9970645,0.0008412939,0.00016233379,0.0004060631,0.0007236801,0.00040992524,0.0001155597,0.00021009726,0.00006657169],"genre_scores_gemma":[0.99273443,0.00059268094,0.000050897594,0.000021865335,0.00008348587,0.00006303027,0.00074070925,0.000033926695,0.0056789964],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99594355,0.0017900945,0.00095648546,0.0007004976,0.000088576315,0.00052080455],"domain_scores_gemma":[0.9978387,0.00074050395,0.0005079923,0.0007821954,0.00010396994,0.000026681626],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0021129835,0.00044056601,0.0012641377,0.0014048321,0.00013244954,0.000049877024,0.0003974224,0.0009591779,0.0001508399],"category_scores_gemma":[0.00054830994,0.00041070097,0.0004071115,0.00063143607,0.00024328599,0.00008864349,0.0007595566,0.0012562677,0.00088242104],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048918064,0.0000477045,0.7967734,0.00008649786,0.0020985836,0.00006087283,0.00078538957,0.000062968225,0.1997726,0.000020916903,0.00006753588,0.00017466076],"study_design_scores_gemma":[0.0006070013,0.000017757722,0.953047,0.00015752032,0.00085019774,0.0000032220312,0.00010866195,0.000055677112,0.044369344,0.00012051891,0.00027021888,0.00039288882],"about_ca_topic_score_codex":0.00041742966,"about_ca_topic_score_gemma":0.000744157,"teacher_disagreement_score":0.15627363,"about_ca_system_score_codex":0.0000740574,"about_ca_system_score_gemma":0.000118814045,"threshold_uncertainty_score":0.9998955},"labels":[],"label_agreement":null},{"id":"W4389167209","doi":"","title":"No genetic relationship between TLR2 rs4696480, rs3804100, and rs3804099 gene polymorphisms and female breast cancer in Saudi populations","year":2017,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Breast cancer; Biology; Genetics; Gene; Oncology; Medicine; Gynecology; Cancer","score_opus":0.21868442424893259,"score_gpt":0.5013713985613433,"score_spread":0.2826869743124107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389167209","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9625759,0.03520983,0.000056479003,0.0004987282,0.00047777288,0.0004035193,0.00014409283,0.000018171047,0.000615511],"genre_scores_gemma":[0.99158496,0.0068243775,0.00011011076,0.000053670024,0.0001143106,0.00004133423,0.000048588558,0.000033586497,0.0011890421],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99795663,0.00039466284,0.00078400475,0.00038611947,0.000109629094,0.00036897836],"domain_scores_gemma":[0.9980033,0.00030863812,0.0008838802,0.00055507466,0.000171901,0.000077218756],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00078558904,0.0002725236,0.00061161205,0.00060805934,0.0009499066,0.000581341,0.0010083752,0.0002754752,0.0022665411],"category_scores_gemma":[0.0003437641,0.00025939173,0.00008029259,0.00020899464,0.0003452506,0.0017508203,0.0006661165,0.00044372052,0.00004417822],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019560094,0.000038969658,0.84238464,0.000025874755,0.000098730656,0.0000072893004,0.00014755625,0.000016788921,0.14524221,0.00007578912,0.000864043,0.010902501],"study_design_scores_gemma":[0.0009946829,0.000010664182,0.9822456,0.00028213582,0.000101482714,0.00006103792,0.000019707288,0.000010407664,0.013482465,0.001200036,0.0012966939,0.0002950713],"about_ca_topic_score_codex":0.0035744302,"about_ca_topic_score_gemma":0.00026579402,"teacher_disagreement_score":0.13986097,"about_ca_system_score_codex":0.00007181866,"about_ca_system_score_gemma":0.00011837226,"threshold_uncertainty_score":0.9999858},"labels":[],"label_agreement":null},{"id":"W4389307459","doi":"10.1038/s41577-023-00975-6","title":"Neonatal monocytes suppress adult TH17 cell responses in skin","year":2023,"lang":"en","type":"review","venue":"Nature reviews. Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Disability Prevention and Rehabilitation; University of Toronto","funders":"","keywords":"Immunology; Medicine; Monocyte; Cell; Cell biology; Biology; Genetics","score_opus":0.026937967246376874,"score_gpt":0.32766541306617986,"score_spread":0.300727445819803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389307459","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00016699638,0.9927783,0.0000042079932,0.00010458415,0.0032143765,0.0027527036,0.00014256833,0.00024932856,0.00058693066],"genre_scores_gemma":[0.000034015447,0.98462385,0.000056766323,0.00012496799,0.00013614926,0.00096422224,0.0024474883,0.0001877879,0.011424747],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.98896044,0.0056210277,0.0027586098,0.0012536605,0.00010442088,0.0013018218],"domain_scores_gemma":[0.99447346,0.002125461,0.0014710464,0.0017222221,0.00017268333,0.00003513292],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0018241856,0.0013240285,0.0052995887,0.0016795057,0.0002378191,0.000051858988,0.0017544935,0.006388572,0.00048273747],"category_scores_gemma":[0.001935019,0.0010429897,0.0014607017,0.0012784561,0.0004040826,0.0002539536,0.00065078185,0.0062215663,0.014042],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036833697,0.00010637677,0.0000022595152,0.01144235,0.0005518306,0.00011670026,0.00023624748,1.4272548e-7,0.0005827843,0.00063188036,0.008885237,0.9770759],"study_design_scores_gemma":[0.0010322193,0.00017311823,0.000034173947,0.013889859,0.00045088388,0.0004899295,0.000070908885,2.568413e-7,0.0012950444,0.000050043473,0.981603,0.000910524],"about_ca_topic_score_codex":0.00009333633,"about_ca_topic_score_gemma":0.000068928064,"teacher_disagreement_score":0.97616535,"about_ca_system_score_codex":0.000349819,"about_ca_system_score_gemma":0.0005644988,"threshold_uncertainty_score":0.9999511},"labels":[],"label_agreement":null},{"id":"W4389615151","doi":"10.1084/jem.20230063","title":"Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice","year":2023,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":45,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Institute for Advanced Research","funders":"Center for Comparative Immigration Studies, University of California, San Diego; Chiba University; University of California, San Diego; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Hartwell Foundation; Howard Hughes Medical Institute; National Institute of Allergy and Infectious Diseases; Japan Agency for Medical Research and Development; National Academies of Sciences, Engineering, and Medicine; Canadian Institute for Advanced Research; Ford Foundation","keywords":"Biology; Immune system; Bacteroides fragilis; FOXP3; Immunology; Signal transduction; Immune tolerance; Interferon; Microbiology; Cell biology; Antibiotics","score_opus":0.019488951890504706,"score_gpt":0.2968835369182332,"score_spread":0.2773945850277285,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4389615151","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99088013,0.0040976037,0.000037216883,0.0035084684,0.0011822033,0.00017517479,5.109344e-7,0.00001335647,0.00010533367],"genre_scores_gemma":[0.99911743,0.00008886194,0.000035483597,0.0003179646,0.00010233071,0.00000300428,0.000009644977,0.000011612148,0.00031366915],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987799,0.00033565,0.0005438844,0.00006836788,0.000057116667,0.00021510455],"domain_scores_gemma":[0.9994452,0.000161606,0.00019215191,0.00012317197,0.000058251615,0.000019640238],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013681814,0.000112602815,0.00027984864,0.00020410628,0.00007198855,0.00000458234,0.00025783258,0.000060006205,0.000402301],"category_scores_gemma":[0.00011348546,0.000069988484,0.000033612712,0.00029041697,0.000093846385,0.000083466875,0.00007421336,0.00027186878,0.0002127512],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003456351,0.00003855017,0.000028063187,0.0000044081626,0.000040024093,0.000016079272,0.008392038,0.000026325099,0.9852559,0.00004085496,0.0019329438,0.00076846447],"study_design_scores_gemma":[0.0017084938,0.0022618535,0.0014263495,0.0004305536,0.000014599448,0.00014859514,0.006824483,0.000014608566,0.983014,0.000030485337,0.0040499894,0.00007598138],"about_ca_topic_score_codex":0.000059252998,"about_ca_topic_score_gemma":0.0000016884826,"teacher_disagreement_score":0.008237297,"about_ca_system_score_codex":0.00008443637,"about_ca_system_score_gemma":0.000027259166,"threshold_uncertainty_score":0.44049138},"labels":[],"label_agreement":null},{"id":"W4390080811","doi":"10.1101/2023.12.20.572362","title":"Attenuating ABHD17 isoforms augments the <i>S</i> -acylation and function of NOD2 and a subset of Crohn’s disease-associated NOD2 variants","year":2023,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Dalhousie University; St. Michael's Hospital","funders":"National Institutes of Health; Canadian Institutes of Health Research; Coventry University; Kenneth Rainin Foundation","keywords":"NOD2; Palmitoylation; Cell biology; Peptidoglycan; Endosome; Signal transduction; Biology; Chemistry; Biochemistry; Intracellular; Innate immune system; Receptor; Enzyme","score_opus":0.015054221957062004,"score_gpt":0.21141515508908898,"score_spread":0.196360933132027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4390080811","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9960547,0.0017879596,0.00024756382,0.00016238808,0.0007614795,0.00061022484,0.00027684803,0.00009608863,0.0000027489311],"genre_scores_gemma":[0.9992185,0.0005090776,0.000042559383,0.000037924452,0.000033312615,0.00007340033,0.000010583863,0.000048468806,0.000026137433],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9981881,0.00030189796,0.0006627348,0.00043715464,0.0001078103,0.00030231435],"domain_scores_gemma":[0.99796945,0.00020330909,0.0009193032,0.00053584547,0.00033582989,0.00003623611],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010241736,0.00030139825,0.00045981898,0.00020059272,0.00024183276,0.000043983146,0.00019776323,0.00044964286,0.000021738102],"category_scores_gemma":[0.0005287594,0.00025448974,0.00008848209,0.00026876372,0.00023087749,0.00016940753,0.00034906063,0.00040263077,0.000020641388],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005059376,0.00007818826,0.035396583,0.00034670174,0.0004985497,0.0000046210957,0.00007783031,0.000022527613,0.9627126,0.00017392199,0.00015738391,0.000025175035],"study_design_scores_gemma":[0.000805752,0.000058457037,0.8773672,0.00045864296,0.0002509302,1.9844949e-8,0.000016204685,0.00014417074,0.12050364,0.000010540106,0.00016192687,0.00022249707],"about_ca_topic_score_codex":0.00012726568,"about_ca_topic_score_gemma":0.0000056436934,"teacher_disagreement_score":0.8422089,"about_ca_system_score_codex":0.00006729804,"about_ca_system_score_gemma":0.00021433878,"threshold_uncertainty_score":0.99999076},"labels":[],"label_agreement":null},{"id":"W4391014716","doi":"10.1159/000535523","title":"TLR10: An intriguing Toll-like receptor with many unanswered questions","year":2024,"lang":"en","type":"article","venue":"Journal of Innate Immunity","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Toll; Innate immune system; Receptor; Biology; Pattern recognition receptor; Toll-like receptor; TLR9; Function (biology); Signalling; Immune system; Immunology; Cell biology; Genetics; Gene","score_opus":0.010383871042195,"score_gpt":0.256791274478578,"score_spread":0.246407403436383,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391014716","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9888182,0.0067861103,0.0010176316,0.00078881567,0.0017510126,0.00010519917,0.000006992028,0.00006873459,0.0006572994],"genre_scores_gemma":[0.9972885,0.0005860034,0.0003884555,0.000078201534,0.00008821364,0.0000034300097,0.000038806553,0.000022659735,0.0015057134],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99837935,0.00062803464,0.0005731707,0.000109951194,0.000067516776,0.00024200046],"domain_scores_gemma":[0.99901,0.0001598587,0.0002479415,0.00027372412,0.00027722146,0.00003124021],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011505736,0.00016521668,0.00028325772,0.00038970605,0.00025982055,0.00008826274,0.00030349125,0.00019501684,0.0005171649],"category_scores_gemma":[0.00011972073,0.00011791427,0.00011164147,0.00029351702,0.00014000219,0.00075034576,0.00004576431,0.0010180412,0.0002180721],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014243926,0.00018000099,0.00015715587,0.00004948219,0.0005515069,0.0000781737,0.0024069578,0.000044421547,0.95841956,0.0021994852,0.0037729,0.030715974],"study_design_scores_gemma":[0.0028226664,0.0035252399,0.011722303,0.0017820768,0.0003214824,0.0046780533,0.0030293365,0.00009198343,0.5096519,0.0007354041,0.46102297,0.0006165502],"about_ca_topic_score_codex":0.00009146786,"about_ca_topic_score_gemma":0.00001302396,"teacher_disagreement_score":0.4572501,"about_ca_system_score_codex":0.000114750954,"about_ca_system_score_gemma":0.0002693587,"threshold_uncertainty_score":0.56625926},"labels":[],"label_agreement":null},{"id":"W4391145773","doi":"10.1101/2024.01.18.576322","title":"Extracellular RNA induce neutrophil recruitment via endothelial TLR3 during venous thrombosis after vascular injury","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Région Bretagne","keywords":"TLR3; Neutrophil extracellular traps; Thrombus; Medicine; Inflammation; Immunology; Platelet activation; Coagulation; Cell biology; Platelet; Innate immune system; Biology; Toll-like receptor; Internal medicine; Immune system","score_opus":0.016123562023602003,"score_gpt":0.22671888059269152,"score_spread":0.21059531856908953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4391145773","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9562507,0.036124155,0.00012377383,0.00020513704,0.004908529,0.0015765936,0.00021885983,0.0005829106,0.0000093088265],"genre_scores_gemma":[0.99605614,0.0015775961,0.00021841613,0.00005486191,0.00055374403,0.0012061148,0.0000033675806,0.00023951002,0.00009027603],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99590886,0.00058937166,0.0009818069,0.0013569456,0.0001958859,0.0009671151],"domain_scores_gemma":[0.9973382,0.000058313297,0.00043336325,0.0017998957,0.00027300246,0.00009722497],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007792855,0.00092158956,0.0009647427,0.0005900599,0.000321196,0.00019712231,0.0006700637,0.0015910439,0.00042580641],"category_scores_gemma":[0.00007938608,0.00095710094,0.00052988704,0.000387601,0.00021737666,0.0001746084,0.0011630687,0.0022060324,0.0025330288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032847698,0.00026698338,0.00009351171,0.0005900307,0.0012548973,0.00018477505,0.0000996242,0.000021787886,0.99684876,0.00019010327,0.000101361955,0.000019711419],"study_design_scores_gemma":[0.0007285332,0.00016286114,0.012593471,0.0007422563,0.0005405167,1.9997196e-7,0.0000042513534,0.00001158778,0.9655584,0.000011151131,0.018659202,0.000987574],"about_ca_topic_score_codex":0.00008904596,"about_ca_topic_score_gemma":0.0000010481876,"teacher_disagreement_score":0.03980538,"about_ca_system_score_codex":0.00058370724,"about_ca_system_score_gemma":0.00054325984,"threshold_uncertainty_score":0.9997051},"labels":[],"label_agreement":null},{"id":"W4392337524","doi":"10.2460/ajvr.23.10.0246","title":"Splenic gene expression of cytokines at multiple time points following lipopolysaccharide challenge in layers","year":2024,"lang":"en","type":"article","venue":"American Journal of Veterinary Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"St. Boniface Hospital; University of Manitoba","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Lipopolysaccharide; Tumor necrosis factor alpha; Saline; Spleen; Cytokine; Inflammation; Immune system; Internal medicine; Medicine; Endocrinology; Real-time polymerase chain reaction; Andrology; Gene expression; Interleukin 10; Interleukin; Immunology; Biology; Gene","score_opus":0.04903254706613325,"score_gpt":0.3509214981755156,"score_spread":0.30188895110938235,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392337524","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9929079,0.0060724355,0.000020782643,0.00044397914,0.00028628274,0.00011247885,0.0000043542495,0.000012069427,0.00013972411],"genre_scores_gemma":[0.9984111,0.00086010015,0.00020608396,0.0000070386177,0.000049072467,0.0000068587497,0.0000077062905,0.000021782504,0.000430229],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99768484,0.001005268,0.0005735526,0.00018202704,0.00017177736,0.000382561],"domain_scores_gemma":[0.9986623,0.0007992848,0.00017381222,0.00021326344,0.00011838155,0.00003295399],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019857134,0.00012463525,0.00039885167,0.00081858475,0.00009254043,0.000014897073,0.00031861282,0.00008540202,0.00024233975],"category_scores_gemma":[0.00025929336,0.00010185789,0.0002043875,0.00035033,0.00027897325,0.0002561128,0.00029008003,0.000559137,0.00020795323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0025294712,0.00008093176,0.0005568382,0.00003593848,0.00010379355,0.00045048542,0.0010828024,0.0000070045758,0.97713983,0.000005977041,0.0002505378,0.017756388],"study_design_scores_gemma":[0.00095333223,0.0050008968,0.0018327368,0.0007214953,0.000014905909,0.00091043656,0.0008796643,0.000054937336,0.98434436,0.000045512847,0.0051088706,0.00013283163],"about_ca_topic_score_codex":0.00008140746,"about_ca_topic_score_gemma":0.0000031282866,"teacher_disagreement_score":0.017623557,"about_ca_system_score_codex":0.00014790086,"about_ca_system_score_gemma":0.00014165431,"threshold_uncertainty_score":0.4153644},"labels":[],"label_agreement":null},{"id":"W4392623957","doi":"10.1111/acel.14133","title":"Chronic TNF exposure induces glucocorticoid‐like immunosuppression in the alveolar macrophages of aged mice that enhances their susceptibility to pneumonia","year":2024,"lang":"en","type":"article","venue":"Aging Cell","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; St. Joseph’s Healthcare Hamilton","funders":"National Heart, Lung, and Blood Institute; National Institute on Aging; American Heart Association; National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Division of Intramural Research, National Institute of Allergy and Infectious Diseases","keywords":"Tumor necrosis factor alpha; Biology; Glucocorticoid; Immunology; Immune system; Alveolar macrophage; MAPK/ERK pathway; Macrophage; Internal medicine; Endocrinology; Kinase; Medicine; In vitro; Cell biology","score_opus":0.009936742011433382,"score_gpt":0.2423747033339444,"score_spread":0.23243796132251102,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4392623957","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.95534223,0.04252128,0.000031535703,0.0005443717,0.0008005155,0.0004129381,0.000007700751,0.0000487338,0.0002906995],"genre_scores_gemma":[0.9983022,0.0005019484,0.000015336149,0.00008431094,0.000034567096,0.00002978044,0.000042792028,0.000016024536,0.00097301],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983036,0.00062406115,0.00036339226,0.0003261592,0.00006290577,0.0003198684],"domain_scores_gemma":[0.9989362,0.00046763392,0.00009763868,0.00046167008,0.000027730766,0.000009138315],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008338087,0.0001918799,0.00024761606,0.00015256925,0.00011510117,0.000049333867,0.0004340161,0.00016541807,0.00017091236],"category_scores_gemma":[0.000029905605,0.00012520746,0.00011338331,0.00026649484,0.00009753571,0.00020014643,0.00011239465,0.00043040016,0.0002605408],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007106493,0.000044350152,0.0007869431,0.00018169981,0.000040162675,0.000008018611,0.009235438,0.000020214722,0.9792581,0.000012396845,0.00024293533,0.010098642],"study_design_scores_gemma":[0.00030840066,0.00020775454,0.042862885,0.0002786039,0.000022657738,0.000012297465,0.002154509,0.000006751835,0.9480652,0.00004245761,0.00590176,0.00013670996],"about_ca_topic_score_codex":0.00021400348,"about_ca_topic_score_gemma":0.000069306094,"teacher_disagreement_score":0.042960007,"about_ca_system_score_codex":0.000059088605,"about_ca_system_score_gemma":0.0000989903,"threshold_uncertainty_score":0.5105812},"labels":[],"label_agreement":null},{"id":"W4393352893","doi":"10.3390/ijms25073927","title":"Diversity, Complexity, and Specificity of Bacterial Lipopolysaccharide (LPS) Structures Impacting Their Detection and Quantification","year":2024,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":29,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; University of Alberta","keywords":"Lipid A; Lipopolysaccharide; Bacteria; Glycolipid; Biochemistry; Bacterial outer membrane; Biology; Gram-negative bacteria; Chemistry; Polysaccharide; Toxicity; Microbiology; Gene; Escherichia coli; Genetics","score_opus":0.0325497976034254,"score_gpt":0.28502083427224817,"score_spread":0.25247103666882276,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393352893","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9922601,0.0024061722,0.003755457,0.0002849336,0.0012038194,0.000031652035,0.000004851787,0.000005654318,0.000047366062],"genre_scores_gemma":[0.9995971,0.00022081552,0.000117061536,0.000010239703,0.000044840468,1.4824278e-7,0.0000019362112,0.0000019812335,0.000005880272],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99943364,0.000092860144,0.00022342805,0.00009184777,0.000093818344,0.00006438774],"domain_scores_gemma":[0.9995456,0.000091964,0.00018464294,0.000033419907,0.0001345019,0.000009867931],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00054118066,0.00005695438,0.000095005606,0.00023847829,0.00017251576,0.00007345066,0.00017907821,0.00004492401,0.00004336987],"category_scores_gemma":[0.00008152694,0.000042861975,0.000044216395,0.000057514095,0.0003098127,0.0002931218,0.00017353584,0.00009894598,0.0000010778066],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011177383,0.0000073659703,0.0003567999,0.000006183231,0.00009189442,0.000004993181,0.00090065243,0.000011227967,0.9670514,0.0040143644,0.0000044335193,0.027438927],"study_design_scores_gemma":[0.00018661849,0.00013120905,0.010297841,0.000053829932,0.000017643762,0.00042952414,0.0005429755,0.00014983605,0.98330396,0.004577663,0.00026090225,0.00004796559],"about_ca_topic_score_codex":0.00007324699,"about_ca_topic_score_gemma":0.000010033171,"teacher_disagreement_score":0.02739096,"about_ca_system_score_codex":0.00001842745,"about_ca_system_score_gemma":0.000038985083,"threshold_uncertainty_score":0.17478606},"labels":[],"label_agreement":null},{"id":"W4393841145","doi":"10.5281/zenodo.5655778","title":"Supplemental materials for Glucocorticoid production in lymphoid organs: Acute effects of lipopolysaccharide in neonatal and adult mice","year":2021,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lipopolysaccharide; Glucocorticoid; Production (economics); Medicine; Immunology; Endocrinology; Internal medicine; Biology","score_opus":0.00780857195658949,"score_gpt":0.22739021927934616,"score_spread":0.21958164732275667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4393841145","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4312261,0.00086096313,0.000034148055,0.00028903663,0.0007698356,0.0022545694,0.5644591,0.00007796157,0.000028308868],"genre_scores_gemma":[0.043284852,0.0012806443,0.000021946802,0.000036949892,0.000050848605,9.583568e-7,0.95484245,0.00032118248,0.00016019758],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980161,0.0005687959,0.00053429283,0.00045857616,0.000094025774,0.0003281705],"domain_scores_gemma":[0.99894595,0.000067075765,0.00025235495,0.00035290336,0.00036210215,0.000019606092],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005946298,0.00020295144,0.00038056326,0.00042974495,0.0002868219,0.00010920528,0.00040445288,0.0002433745,0.0030617134],"category_scores_gemma":[0.00133793,0.00022098084,0.000041871448,0.00023107878,0.0001237264,0.00019934167,0.0005950014,0.00023411174,0.00061825104],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005855272,0.000090928515,0.0000012015038,0.0006332191,0.00009705168,0.000012927453,0.0003445083,8.996669e-7,0.58746105,0.000031107575,0.40705347,0.0036881343],"study_design_scores_gemma":[0.0014655911,0.00023453578,0.00007418183,0.00018602713,0.000044596574,0.00020943797,0.00022158638,9.278195e-7,0.4653981,0.000006690773,0.5320171,0.00014121155],"about_ca_topic_score_codex":0.00021644791,"about_ca_topic_score_gemma":0.000012074953,"teacher_disagreement_score":0.39038336,"about_ca_system_score_codex":0.00019343873,"about_ca_system_score_gemma":0.000021194022,"threshold_uncertainty_score":0.99784964},"labels":[],"label_agreement":null},{"id":"W4394057510","doi":"10.5281/zenodo.5655777","title":"Supplemental materials for Glucocorticoid production in lymphoid organs: Acute effects of lipopolysaccharide in neonatal and adult mice","year":2021,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lipopolysaccharide; Glucocorticoid; Immunology; Medicine; Biology; Internal medicine; Endocrinology","score_opus":0.00780857195658949,"score_gpt":0.22739021927934616,"score_spread":0.21958164732275667,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394057510","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4312261,0.00086096313,0.000034148055,0.00028903663,0.0007698356,0.0022545694,0.5644591,0.00007796157,0.000028308868],"genre_scores_gemma":[0.043284852,0.0012806443,0.000021946802,0.000036949892,0.000050848605,9.583568e-7,0.95484245,0.00032118248,0.00016019758],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980161,0.0005687959,0.00053429283,0.00045857616,0.000094025774,0.0003281705],"domain_scores_gemma":[0.99894595,0.000067075765,0.00025235495,0.00035290336,0.00036210215,0.000019606092],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005946298,0.00020295144,0.00038056326,0.00042974495,0.0002868219,0.00010920528,0.00040445288,0.0002433745,0.0030617134],"category_scores_gemma":[0.00133793,0.00022098084,0.000041871448,0.00023107878,0.0001237264,0.00019934167,0.0005950014,0.00023411174,0.00061825104],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005855272,0.000090928515,0.0000012015038,0.0006332191,0.00009705168,0.000012927453,0.0003445083,8.996669e-7,0.58746105,0.000031107575,0.40705347,0.0036881343],"study_design_scores_gemma":[0.0014655911,0.00023453578,0.00007418183,0.00018602713,0.000044596574,0.00020943797,0.00022158638,9.278195e-7,0.4653981,0.000006690773,0.5320171,0.00014121155],"about_ca_topic_score_codex":0.00021644791,"about_ca_topic_score_gemma":0.000012074953,"teacher_disagreement_score":0.39038336,"about_ca_system_score_codex":0.00019343873,"about_ca_system_score_gemma":0.000021194022,"threshold_uncertainty_score":0.99784964},"labels":[],"label_agreement":null},{"id":"W4394719172","doi":"10.1016/j.healun.2024.02.195","title":"Engraftment of Alveolar Macrophages from Human LT Recipients into Immunodeficient Mice as a Tool to Study Mechanisms of Lung Allograft Inflammation","year":2024,"lang":"en","type":"article","venue":"The Journal of Heart and Lung Transplantation","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University Health Network","funders":"","keywords":"Inflammation; Lung; Immunology; Human lung; Alveolar macrophage; Medicine; Macrophage; Pathology; Biology; Internal medicine; In vitro","score_opus":0.005796543958365118,"score_gpt":0.26479040129214104,"score_spread":0.25899385733377595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394719172","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99157745,0.0045844587,0.0028329024,0.00025315516,0.00031783475,0.00040080567,0.0000147583,0.000009105786,0.00000951584],"genre_scores_gemma":[0.99916935,0.00045762103,0.00023108265,0.000018233093,0.000017460892,0.0000060141374,0.00005356178,0.00000911376,0.000037566442],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99860847,0.00040647673,0.0006640577,0.0000954699,0.00011542102,0.00011012967],"domain_scores_gemma":[0.9993736,0.0001832456,0.00020077375,0.00011255844,0.00011812051,0.000011697778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011532111,0.00011490381,0.00023995632,0.00021706232,0.00013943535,0.000018203264,0.00011709911,0.00007530344,0.00007628128],"category_scores_gemma":[0.000015315172,0.000080538295,0.000081586644,0.00012734058,0.000039044764,0.00017338694,0.00001661342,0.0001695239,0.000010613498],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0015342521,0.0000854636,0.0002516914,0.00009760455,0.00041935578,0.0000055172145,0.024417596,0.00006811919,0.9714099,0.00020245233,0.00004727536,0.0014607257],"study_design_scores_gemma":[0.0011346509,0.0010652938,0.03600546,0.00041716674,0.0006431984,0.000089933164,0.0011717946,0.000046649006,0.9586952,0.00043021244,0.00021126118,0.00008922001],"about_ca_topic_score_codex":0.0002685259,"about_ca_topic_score_gemma":0.000020259666,"teacher_disagreement_score":0.035753768,"about_ca_system_score_codex":0.000029367951,"about_ca_system_score_gemma":0.000036008598,"threshold_uncertainty_score":0.32842565},"labels":[],"label_agreement":null},{"id":"W4394770555","doi":"10.1089/vim.2024.0035","title":"Inflammatory Consequences and Immune Modulation","year":2024,"lang":"en","type":"editorial","venue":"Viral Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Immune system; Immune modulation; Biology; Psychology; Medicine; Immunology; Neuroscience","score_opus":0.005490172773741091,"score_gpt":0.23391169572034456,"score_spread":0.22842152294660348,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4394770555","genre_codex":"editorial","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"editorial","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03402307,0.08216018,0.000015878792,0.0005621556,0.8808537,0.00042859692,0.00009194795,0.00036976085,0.0014946996],"genre_scores_gemma":[0.44408754,0.022302805,0.00009788777,0.00014379687,0.43779436,0.0005551581,0.011274915,0.00044551858,0.083298035],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9972186,0.0005572806,0.0008741897,0.00067722227,0.00009660508,0.0005760769],"domain_scores_gemma":[0.99829817,0.00056218053,0.00037164649,0.0005558594,0.00019522195,0.000016909884],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00057294,0.00054837717,0.00077967695,0.0005461614,0.00026886043,0.000097505195,0.0003899742,0.0030362927,0.00041410216],"category_scores_gemma":[0.0005779174,0.0005039732,0.00018778155,0.00014576923,0.0016384409,0.0002812153,0.00035671168,0.0019292351,0.0034968716],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039900985,0.000021015461,0.0000035958124,0.00013251415,0.00075513934,0.000034729866,0.00033104437,0.0000017217984,0.41878593,0.0032369618,0.5693606,0.006937737],"study_design_scores_gemma":[0.00085570535,0.00033817373,0.00022460433,0.00023301043,0.00016670552,0.000085169195,0.00009450045,0.000012006849,0.033333108,0.0032675555,0.9608684,0.0005210586],"about_ca_topic_score_codex":0.00026803277,"about_ca_topic_score_gemma":0.000016499022,"teacher_disagreement_score":0.44305936,"about_ca_system_score_codex":0.00014245785,"about_ca_system_score_gemma":0.0004439279,"threshold_uncertainty_score":0.9997412},"labels":[],"label_agreement":null},{"id":"W4395026182","doi":"10.1016/j.clim.2024.110075","title":"133 Looking for ALPS: 10 years experience of a combined assessment of serum FASL levels and circulating double negative T cells at the CHU Sainte-Justine","year":2024,"lang":"en","type":"article","venue":"Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Fas ligand; Medicine; Geography; Immunology; Biology; Apoptosis; Biochemistry","score_opus":0.051539861168669515,"score_gpt":0.3785220487235947,"score_spread":0.32698218755492514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395026182","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9942132,0.002972928,0.0005175216,0.0004430897,0.0010228213,0.00049065275,0.000034302942,0.00003344474,0.0002719887],"genre_scores_gemma":[0.9972436,0.00015151087,0.00018876494,0.000052382304,0.000023975655,0.000052062125,0.000025457464,0.00001673316,0.0022455496],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980133,0.00038402117,0.0009591033,0.00032018317,0.000037793525,0.00028558375],"domain_scores_gemma":[0.9962477,0.0029278316,0.00034445772,0.0003341331,0.00013416703,0.000011677679],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010587478,0.0001544684,0.0004990682,0.00008436486,0.0001332392,0.000013126626,0.00023111716,0.00032932634,0.0005476944],"category_scores_gemma":[0.00039127225,0.00011775572,0.00018455561,0.00013674558,0.0010701808,0.00009069324,0.000280934,0.0003463958,0.000032253993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009966067,0.000100100515,0.001308935,0.00009375729,0.00072661164,0.0000036678168,0.0023158144,0.000017007116,0.96626854,0.0032292474,0.0003008186,0.024638891],"study_design_scores_gemma":[0.0064666355,0.0022253308,0.106299564,0.0004265159,0.000270416,0.00006539513,0.0031739753,0.0009312525,0.8662319,0.00083522685,0.012739001,0.00033475488],"about_ca_topic_score_codex":0.000044720236,"about_ca_topic_score_gemma":0.000010725874,"teacher_disagreement_score":0.10499063,"about_ca_system_score_codex":0.000044534685,"about_ca_system_score_gemma":0.00012775933,"threshold_uncertainty_score":0.599687},"labels":[],"label_agreement":null},{"id":"W4395084375","doi":"10.1016/j.vetimm.2024.110758","title":"Resting and activated bovine neutrophils and eosinophils differ in their responses to adrenergic agonists","year":2024,"lang":"en","type":"article","venue":"Veterinary Immunology and Immunopathology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan; Global Institute for Water Security","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Eosinophil; Biology; Stimulation; Zymosan; Adrenergic receptor; Receptor; Agonist; Immunology; Immune system; Granulocyte; Endocrinology; Internal medicine; Innate immune system; Medicine; In vitro; Biochemistry","score_opus":0.01736719366849955,"score_gpt":0.25738561048121283,"score_spread":0.2400184168127133,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4395084375","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9283643,0.06831721,0.0000203905,0.0018750359,0.0007733322,0.0003473518,0.000023314067,0.00016168687,0.00011740576],"genre_scores_gemma":[0.99384826,0.0048828362,0.00007763453,0.00024867032,0.000029015771,0.00009673591,0.00006581412,0.00004282869,0.00070817926],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968833,0.0011281695,0.0005697778,0.0007354054,0.000027238313,0.0006561164],"domain_scores_gemma":[0.9987472,0.00069562194,0.000085987005,0.00039355044,0.000041384716,0.000036197078],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00063993805,0.00042883086,0.0006185096,0.00081254623,0.00034347194,0.00007425179,0.00018998413,0.0005821352,0.00005103966],"category_scores_gemma":[0.00022967125,0.00037595181,0.000050168703,0.00032544314,0.0007862073,0.0003136151,0.0005209539,0.0007141443,0.00006212876],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0047628717,0.000050636427,0.0010538812,0.00006263391,0.0001239958,0.0004920187,0.0019634182,5.498623e-7,0.96062493,0.0009398417,0.000037546884,0.029887697],"study_design_scores_gemma":[0.0029133335,0.008190971,0.7039338,0.0005484816,0.000076463606,0.02695274,0.0008823035,0.000029853685,0.2230407,0.0011056105,0.03140426,0.0009215151],"about_ca_topic_score_codex":0.0000757742,"about_ca_topic_score_gemma":0.0000048267348,"teacher_disagreement_score":0.73758423,"about_ca_system_score_codex":0.000049510945,"about_ca_system_score_gemma":0.00006497756,"threshold_uncertainty_score":0.9998692},"labels":[],"label_agreement":null},{"id":"W4396977071","doi":"10.1084/jem.20231987","title":"γδ T cell profiling in a cohort of preterm infants reveals elevated frequencies of <i>CD83</i>+ γδ T cells in sepsis","year":2024,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":17,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Bundesministerium für Bildung und Forschung; Medizinischen Hochschule Hannover; Deutsche Forschungsgemeinschaft","keywords":"Sepsis; Flow cytometry; Immunology; Phenotype; Neonatal sepsis; T cell; Biology; CD86; Medicine; Immune system; Andrology; Gene; Genetics","score_opus":0.011866022283440327,"score_gpt":0.2741271531839664,"score_spread":0.2622611309005261,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4396977071","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96512985,0.03342902,0.000008553609,0.0001450942,0.00044650308,0.00025526356,0.000003612537,0.000004618829,0.0005774925],"genre_scores_gemma":[0.99878526,0.00090529164,0.00004680529,0.000040201405,0.00002765681,0.0000042418365,0.000005960612,0.000009745258,0.00017481559],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982876,0.00037397345,0.0009985433,0.000079880076,0.00009525796,0.00016470131],"domain_scores_gemma":[0.9990848,0.0003108758,0.00038160713,0.00014581947,0.000064743355,0.000012179454],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015419977,0.000120586155,0.00044996044,0.0003340335,0.000019737958,0.0000022270644,0.00020290089,0.00010303326,0.00020352415],"category_scores_gemma":[0.000087609784,0.00007328592,0.000060349055,0.00026381892,0.00023910194,0.00012818423,0.00003846194,0.00031933974,0.0000067137153],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00092996325,0.000079608275,0.0026394294,0.00007779985,0.000080804726,0.000016857157,0.008344316,0.000010732068,0.98740625,0.000033217122,0.00027104333,0.0001099804],"study_design_scores_gemma":[0.0014020092,0.0008389121,0.0031050579,0.0013537131,0.000047768437,0.0000859454,0.0037066678,0.000014479828,0.9892326,0.000053890777,0.000097009535,0.00006194696],"about_ca_topic_score_codex":0.00015744653,"about_ca_topic_score_gemma":0.000002804165,"teacher_disagreement_score":0.03365544,"about_ca_system_score_codex":0.00007284469,"about_ca_system_score_gemma":0.00007916421,"threshold_uncertainty_score":0.29885128},"labels":[],"label_agreement":null},{"id":"W4398209976","doi":"10.1016/j.cyto.2024.156659","title":"Association of IL-1β gene polymorphisms rs1143627, rs1799916, and rs16944 with altered risk of triple-negative breast cancer","year":2024,"lang":"en","type":"article","venue":"Cytokine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Brock University","funders":"","keywords":"Triple-negative breast cancer; Breast cancer; Genetics; Biology; Gene; Oncology; Medicine; Cancer","score_opus":0.005271759242037387,"score_gpt":0.21804517328348616,"score_spread":0.21277341404144878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398209976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9931159,0.004259705,0.00021549035,0.00066036935,0.0004489771,0.000219391,0.00083892583,0.000037510643,0.00020373611],"genre_scores_gemma":[0.99524117,0.0010462891,0.00008734077,0.000017875982,0.00005840899,0.000021494676,0.00009045375,0.000016820417,0.0034201776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990343,0.00019979088,0.0003271332,0.00019635496,0.000056629484,0.0001858025],"domain_scores_gemma":[0.9991914,0.00019633418,0.0002973607,0.00015704357,0.00014471183,0.000013129595],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00032302702,0.00014119182,0.00031013563,0.00015876128,0.00006310988,0.000009712852,0.000076294826,0.00017198593,0.00035720243],"category_scores_gemma":[0.00007283617,0.00010820574,0.000062995394,0.00022310343,0.00012670476,0.00014019328,0.00003492768,0.00018901321,0.000025823329],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012373264,0.00004738272,0.012381987,0.000057312216,0.0010831231,0.0000021980575,0.0010398013,0.00001234442,0.9708215,0.00028240084,0.001493622,0.011541009],"study_design_scores_gemma":[0.0016162696,0.00019822406,0.18527061,0.0001592024,0.00027555018,0.000048205366,0.00009792243,0.00003915974,0.8097033,0.0001110141,0.0023506475,0.00012989964],"about_ca_topic_score_codex":0.00070626586,"about_ca_topic_score_gemma":0.00006801434,"teacher_disagreement_score":0.17288862,"about_ca_system_score_codex":0.00007734526,"about_ca_system_score_gemma":0.00010409168,"threshold_uncertainty_score":0.4412502},"labels":[],"label_agreement":null},{"id":"W4398243509","doi":"10.1089/derm.2023.0311","title":"Toll-Like Receptors and Contact Dermatitis","year":2024,"lang":"en","type":"review","venue":"Dermatitis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Toll; Contact dermatitis; Receptor; Dermatology; Immunology; Internal medicine; Allergy","score_opus":0.01779499266495228,"score_gpt":0.27532274012506397,"score_spread":0.2575277474601117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398243509","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000028499047,0.99263126,0.000019828809,0.0003007022,0.0038638953,0.000587587,0.00008158675,0.00018699345,0.0022996503],"genre_scores_gemma":[0.00007266132,0.98890156,0.000024134972,0.0004574332,0.000069080634,0.00015089335,0.0013284142,0.00006626477,0.008929567],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99790144,0.0004895118,0.00081046426,0.00037416563,0.000048684487,0.0003757245],"domain_scores_gemma":[0.9990734,0.00023184001,0.00026197342,0.00036442178,0.000037381044,0.000030974617],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019156947,0.00049879396,0.0013640415,0.00037353273,0.00018001813,0.00011613713,0.00022934045,0.0007700344,0.0010326838],"category_scores_gemma":[0.00005381436,0.00040029688,0.00036083293,0.0002032151,0.00011003506,0.00021244225,0.00015651461,0.0006377558,0.009588616],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[5.0083287e-7,0.000008340152,0.0000013247153,0.0071659433,0.00043657693,0.000044146105,0.00021270133,6.916728e-9,0.0000066031894,0.00045761248,0.3353281,0.65633816],"study_design_scores_gemma":[0.00020320136,0.000041209652,0.000030053203,0.00858637,0.000957133,0.0022207624,0.00003384766,6.143969e-7,0.000058009096,0.00004373595,0.9874083,0.000416807],"about_ca_topic_score_codex":0.00005242587,"about_ca_topic_score_gemma":0.000012735694,"teacher_disagreement_score":0.65592134,"about_ca_system_score_codex":0.00009273383,"about_ca_system_score_gemma":0.00017051438,"threshold_uncertainty_score":0.9998805},"labels":[],"label_agreement":null},{"id":"W4398256031","doi":"10.1084/jem.20232005","title":"Large-scale mutational analysis identifies UNC93B1 variants that drive TLR-mediated autoimmunity in mice and humans","year":2024,"lang":"en","type":"article","venue":"The Journal of Experimental Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":37,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Common Fund; Office of Strategic Coordination; National Institute of Neurological Disorders and Stroke; National Institute of Arthritis and Musculoskeletal and Skin Diseases; Howard Hughes Medical Institute; Lupus Research Institute; National Institute of Allergy and Infectious Diseases; NIH Office of the Director; National Human Genome Research Institute; Centers for Disease Control and Prevention Foundation; National Science Foundation; Lupus Research Alliance; National Institutes of Health; Children's Mercy Hospital; Centers for Disease Control and Prevention","keywords":"TLR7; Autoimmunity; Biology; Immunology; TLR3; Autoimmune disease; Innate immune system; Toll-like receptor; Immune system; Antibody","score_opus":0.013572136516563244,"score_gpt":0.28724199855139454,"score_spread":0.2736698620348313,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4398256031","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9583774,0.0393476,0.0002503092,0.0011058939,0.00059104926,0.00008710839,0.000006044543,0.000011772515,0.00022280379],"genre_scores_gemma":[0.9987193,0.0004914854,0.0000113621945,0.00010872721,0.0000480906,0.0000026529851,0.000058332018,0.000007290464,0.0005527552],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874526,0.00045883557,0.00045001655,0.00008861225,0.00009621931,0.00016105051],"domain_scores_gemma":[0.9991605,0.00049226923,0.00017159003,0.00010458062,0.000053960084,0.000017049784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014163161,0.00011676734,0.00030531804,0.00045073786,0.00014113644,0.000015940175,0.0001609418,0.000083716324,0.00085370714],"category_scores_gemma":[0.00008800028,0.000070472444,0.00006882582,0.00035914627,0.0002827305,0.00023506799,0.00005360661,0.0003548211,0.000032111795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039219004,0.00008005173,0.0005302812,0.000009333011,0.0007713685,0.000035152938,0.039346702,0.000012950926,0.9578279,0.00015330134,0.000719004,0.00012171618],"study_design_scores_gemma":[0.005108317,0.0009911038,0.20218036,0.00063194026,0.0013556612,0.0009776524,0.108969904,0.0006311679,0.6752244,0.0005047412,0.003145904,0.00027883553],"about_ca_topic_score_codex":0.00012573288,"about_ca_topic_score_gemma":0.000042901687,"teacher_disagreement_score":0.28260353,"about_ca_system_score_codex":0.00006348591,"about_ca_system_score_gemma":0.00004625776,"threshold_uncertainty_score":0.9347494},"labels":[],"label_agreement":null},{"id":"W4399031109","doi":"","title":"Intestinal expression of pro-infiammatory cytokines induced by oral intake of lipopolysaccharide (LPS) from E. coli in weaned pigs","year":2013,"lang":"en","type":"article","venue":"DOAJ (DOAJ: Directory of Open Access Journals)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"York University","funders":"","keywords":"Lipopolysaccharide; Microbiology; Biology; Immunology","score_opus":0.12324324124215062,"score_gpt":0.4502792698782738,"score_spread":0.3270360286361232,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4399031109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895567,0.008657261,0.00005383137,0.00007685799,0.00045333343,0.00074586173,0.00004486302,0.000024128483,0.00038712466],"genre_scores_gemma":[0.9980955,0.001285564,0.000103725935,0.000050151466,0.000031362208,0.0000809305,0.000100745725,0.000035065317,0.000216913],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99665314,0.00078202144,0.0016415251,0.00035431507,0.00019319901,0.00037577905],"domain_scores_gemma":[0.9967598,0.0005606055,0.0017047832,0.00047986046,0.00043547843,0.00005948231],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009880612,0.00033224508,0.0010608981,0.0008123436,0.000107530694,0.000120161945,0.0016788539,0.00033550378,0.008813436],"category_scores_gemma":[0.0006504653,0.00028847787,0.0001599741,0.000446719,0.00025084487,0.0018814321,0.00067067205,0.0005669684,0.00005068312],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010058879,0.0003404108,0.08805113,0.00006664476,0.000121031626,0.000003778631,0.00042773996,0.0000057175607,0.89575756,0.00002329549,0.007751041,0.006445736],"study_design_scores_gemma":[0.0010715112,0.00003814669,0.2594847,0.0007807002,0.000033191707,0.0000067388346,0.00024391331,0.0000058934434,0.73659384,0.00074675336,0.00078017113,0.00021446764],"about_ca_topic_score_codex":0.006592091,"about_ca_topic_score_gemma":0.00006595506,"teacher_disagreement_score":0.17143357,"about_ca_system_score_codex":0.000070931215,"about_ca_system_score_gemma":0.00020963831,"threshold_uncertainty_score":0.9999567},"labels":[],"label_agreement":null},{"id":"W4400280800","doi":"10.3390/poultry3030016","title":"A Whole Blood Method for Assessing the Innate Immune Response in Chickens","year":2024,"lang":"en","type":"article","venue":"Poultry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Prince Edward Island","funders":"","keywords":"Innate immune system; Immune system; Lipopolysaccharide; Immunology; Peripheral blood; Immunity; Biology","score_opus":0.01409780029191493,"score_gpt":0.3207240079310925,"score_spread":0.3066262076391776,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400280800","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9741579,0.011954636,0.0071264333,0.0052257488,0.000794428,0.00034142353,0.000012138323,0.00007556236,0.0003116699],"genre_scores_gemma":[0.9899923,0.000056439185,0.0008229313,0.00020206574,0.000053602784,0.00012039295,0.00007544933,0.000025952533,0.008650874],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983816,0.00082535914,0.0002981551,0.00020226679,0.000023917532,0.00026868228],"domain_scores_gemma":[0.9983349,0.001337932,0.000048846672,0.00024634023,0.000025827181,0.0000061527935],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0026012405,0.00012010837,0.000158957,0.00016603967,0.0001659303,0.00007317992,0.00016768377,0.00018586821,0.000046250378],"category_scores_gemma":[0.000554045,0.00008337008,0.0001041244,0.00022943756,0.0000580798,0.0001322251,0.000049450275,0.00033988376,0.00020677088],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007012332,0.000032847598,0.000090753405,0.00002564613,0.0000996326,0.0000075294142,0.0012213335,0.000010437337,0.98969364,0.00097610615,0.00060167327,0.0065391366],"study_design_scores_gemma":[0.0018392496,0.00020277945,0.040594783,0.00030314812,0.00012543927,0.00025625192,0.0023680923,0.00044464538,0.5785168,0.0013384131,0.37372133,0.00028908803],"about_ca_topic_score_codex":0.000037233345,"about_ca_topic_score_gemma":0.0000019096644,"teacher_disagreement_score":0.4111769,"about_ca_system_score_codex":0.000024240817,"about_ca_system_score_gemma":0.00013337187,"threshold_uncertainty_score":0.33997333},"labels":[],"label_agreement":null},{"id":"W4400621681","doi":"10.1111/imm.13836","title":"Polygenic <scp>TB</scp> control and the sequence of innate/adaptive immune responses to infection: <scp>MHC</scp>‐<scp>II</scp> alleles determine the size of the <scp>S100A8</scp>/9‐producing neutrophil population","year":2024,"lang":"en","type":"article","venue":"Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Russian Science Foundation; McGill University","keywords":"Biology; Major histocompatibility complex; Congenic; Phenotype; Population; Immunology; Immune system; Acquired immune system; Allele; S100A8; Genetics; Gene","score_opus":0.011001741706125705,"score_gpt":0.2352698947286527,"score_spread":0.224268153022527,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400621681","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9457665,0.047630634,0.00013643496,0.0014690235,0.002358164,0.0018330746,0.000109691726,0.00019742706,0.0004990296],"genre_scores_gemma":[0.989132,0.0024494343,0.00004518589,0.00041281947,0.00019125784,0.0002957398,0.00006983926,0.000096261436,0.0073074596],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99212486,0.00372926,0.0017801427,0.00097446714,0.00024914267,0.0011421319],"domain_scores_gemma":[0.97985893,0.016806122,0.0010958351,0.001655299,0.0005340665,0.000049731716],"candidate_categories":["metaresearch","metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002765992,0.00078711857,0.0013163364,0.00057449023,0.0011980901,0.00010909515,0.0011695687,0.00089896435,0.000012835242],"category_scores_gemma":[0.014193542,0.0004984771,0.0005730459,0.0012520734,0.0021566032,0.0004973461,0.00084877963,0.0014842147,0.00013034417],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000349832,0.0001278234,0.0023152363,0.000097137745,0.0016994274,0.000014891239,0.013197932,0.00021032497,0.9716141,0.0050759083,0.0014790986,0.0038182526],"study_design_scores_gemma":[0.005685134,0.0020307542,0.383047,0.00052523636,0.00084431237,0.0013178297,0.0059163454,0.00031108494,0.5354536,0.002361959,0.062370077,0.00013663498],"about_ca_topic_score_codex":0.0017889283,"about_ca_topic_score_gemma":0.00016548895,"teacher_disagreement_score":0.4361605,"about_ca_system_score_codex":0.000188774,"about_ca_system_score_gemma":0.0004085137,"threshold_uncertainty_score":0.9997467},"labels":[],"label_agreement":null},{"id":"W4400789143","doi":"10.1016/j.celrep.2024.114493","title":"Mitochondrial perturbations in low-protein-diet-fed mice are associated with altered neutrophil development and effector functions","year":2024,"lang":"en","type":"article","venue":"Cell Reports","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; University of Toronto; Princess Margaret Cancer Centre; Hospital for Sick Children","funders":"Scheme for Promotion of Academic and Research Collaboration; Canadian Institutes of Health Research; Hospital for Sick Children; Bill and Melinda Gates Foundation","keywords":"Immunology; Sepsis; Effector; Malnutrition; Lipopolysaccharide; Biology; Inflammation; Context (archaeology); Acute-phase protein; Immunity; Immune system; Medicine; Internal medicine","score_opus":0.006704417334510561,"score_gpt":0.19431931867749322,"score_spread":0.18761490134298267,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400789143","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99524295,0.0021618556,0.00010153402,0.0001414431,0.0011145939,0.0004630159,0.000004929879,0.0001031174,0.00066657364],"genre_scores_gemma":[0.98809135,0.000010681521,0.000058204085,0.000019675761,0.000043453085,0.0001338293,0.00037859392,0.000019588673,0.011244615],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9988987,0.00014167099,0.00036791584,0.0003221527,0.000042153053,0.0002274419],"domain_scores_gemma":[0.9994877,0.00013084276,0.0001431517,0.00017019872,0.00004886178,0.000019271933],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017913742,0.00015844025,0.00019849463,0.00017034852,0.00017241138,0.00004452199,0.000037479105,0.000186484,0.00012291469],"category_scores_gemma":[0.00013304214,0.00013063257,0.00004025115,0.00019117838,0.00006044796,0.000102771635,0.0000308229,0.000250207,0.00012831764],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004513514,0.00010854637,0.00072780886,0.00008950028,0.00014340677,0.00034284312,0.00093634543,0.000024302704,0.9942933,0.000008412917,0.0021336116,0.00074060523],"study_design_scores_gemma":[0.0029165144,0.00081493106,0.12482765,0.002039211,0.00019096602,0.00049096346,0.0005553968,0.00013152715,0.70969933,0.000045512035,0.15738194,0.0009060642],"about_ca_topic_score_codex":0.000027844953,"about_ca_topic_score_gemma":0.00007711872,"teacher_disagreement_score":0.28459394,"about_ca_system_score_codex":0.000109518594,"about_ca_system_score_gemma":0.00017448653,"threshold_uncertainty_score":0.5327042},"labels":[],"label_agreement":null},{"id":"W4400980507","doi":"10.1182/blood.2024025017","title":"Varied roles for LGR6 in the immune response","year":2024,"lang":"en","type":"letter","venue":"Blood","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University; University of Calgary","funders":"","keywords":"Immune system; Biology; Immunology","score_opus":0.011148896458402828,"score_gpt":0.23519459412057528,"score_spread":0.22404569766217244,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4400980507","genre_codex":"commentary","genre_gemma":"commentary","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"commentary","genre_consensus":"commentary","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06753032,0.04535764,0.000035000783,0.8821835,0.001817916,0.0015545773,0.00015387141,0.00014024379,0.0012269136],"genre_scores_gemma":[0.1246887,0.000854248,0.00016832404,0.710746,0.0037498141,0.0032631608,0.009415753,0.00038712932,0.14672686],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99775136,0.0010150139,0.00045188676,0.00031719406,0.00004625937,0.00041829783],"domain_scores_gemma":[0.99788785,0.0013898425,0.00012283954,0.0005547413,0.0000417167,0.000003021457],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001441027,0.00026883135,0.00035529613,0.00028130092,0.00012680251,0.00005835921,0.0005035006,0.0012315778,0.00012641076],"category_scores_gemma":[0.00028967593,0.00018483413,0.00024119644,0.00015503497,0.00009917536,0.000050444945,0.000065898625,0.001562182,0.0010531473],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001392605,0.00009135777,0.0000027687483,0.0001265955,0.00038480866,0.0001673425,0.0012568989,2.910017e-7,0.12968677,0.0002504646,0.8660884,0.00055169786],"study_design_scores_gemma":[0.0015590511,0.00020561428,0.00029702976,0.00013046697,0.0002585638,0.00017713093,0.0000968671,5.8543424e-7,0.04924943,0.00053878553,0.9472684,0.00021803612],"about_ca_topic_score_codex":0.000028453276,"about_ca_topic_score_gemma":0.000005258659,"teacher_disagreement_score":0.1714375,"about_ca_system_score_codex":0.000025817584,"about_ca_system_score_gemma":0.00017778274,"threshold_uncertainty_score":0.9997246},"labels":[],"label_agreement":null},{"id":"W4401082267","doi":"10.1002/eji.202451190","title":"Sepsis shapes the human γδ TCR repertoire in an age‐ and pathogen‐dependent manner","year":2024,"lang":"en","type":"article","venue":"European Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Medical Research Council; Walloon excellence in life sciences and biotechnology; Université de Lausanne; Medizinischen Hochschule Hannover; Fonds De La Recherche Scientifique - FNRS; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Repertoire; Biology; Streptococcus pneumoniae; T-cell receptor; Sepsis; Immunology; Microbiology; Staphylococcus aureus; T cell; Bacteria; Genetics; Immune system; Antibiotics","score_opus":0.015294654160027236,"score_gpt":0.24695332054225153,"score_spread":0.2316586663822243,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401082267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.96475685,0.031765766,0.00004685578,0.0012533489,0.0007307542,0.00008553441,0.0000028799648,0.00002820409,0.0013298041],"genre_scores_gemma":[0.99707574,0.00089674396,0.00002389626,0.00015137868,0.000088125154,0.0000017104286,0.000013602306,0.000028965043,0.0017198682],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9967261,0.002123124,0.0006545842,0.00019153033,0.000041297346,0.00026337808],"domain_scores_gemma":[0.99937093,0.00013400277,0.00019028629,0.00022348887,0.0000660556,0.000015250164],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0016779238,0.00016643664,0.00026590453,0.0003113634,0.00019941197,0.000073591684,0.0003778616,0.00009610128,0.00025888722],"category_scores_gemma":[0.00008510017,0.00010763151,0.000100516554,0.00012042707,0.00027862436,0.00026607056,0.00012889829,0.0007563001,0.00019858101],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020363,0.000048160324,0.00018514942,0.00001128459,0.00021496863,0.0019092796,0.0031814878,0.000008662753,0.9456563,0.0008476972,0.0006185114,0.04711489],"study_design_scores_gemma":[0.005346071,0.0047588814,0.4064339,0.00094495784,0.00032124098,0.0174568,0.0072824745,0.000031969514,0.10499499,0.001053922,0.45047864,0.0008961403],"about_ca_topic_score_codex":0.000011374858,"about_ca_topic_score_gemma":0.000015211788,"teacher_disagreement_score":0.8406613,"about_ca_system_score_codex":0.000036732657,"about_ca_system_score_gemma":0.00004023872,"threshold_uncertainty_score":0.43890855},"labels":[],"label_agreement":null},{"id":"W4401476093","doi":"10.1093/jleuko/qiae175","title":"STING coordinates resolution of inflammation during wound repair by modulating macrophage trafficking through STAT3","year":2024,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Aging","funders":"","keywords":"Sting; Inflammation; Chemokine; Macrophage; Wound healing; Biology; Monocyte; Immunology; Innate immune system; CCR2; Chemokine receptor; Cell biology; Cancer research; Immune system","score_opus":0.011196126980121892,"score_gpt":0.2632345073815783,"score_spread":0.2520383804014564,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401476093","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9753808,0.02044343,0.0026495163,0.00017748593,0.0009645857,0.00011721281,0.0000075467515,0.00007533926,0.0001841068],"genre_scores_gemma":[0.99846196,0.0004759557,0.00051169604,0.000009256174,0.00015825688,0.0000026239816,0.000044499277,0.000019176694,0.00031658157],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99788874,0.00045559212,0.0011137066,0.0001832961,0.000053271364,0.0003054126],"domain_scores_gemma":[0.9985672,0.00037173906,0.00071044714,0.00013667009,0.00019910416,0.000014838148],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001007881,0.00017106939,0.000400724,0.00026077637,0.00017057887,0.000022919598,0.00015206885,0.00031660518,0.000076966346],"category_scores_gemma":[0.00036531957,0.00014406143,0.00021481872,0.00021557667,0.00015628905,0.00048560067,0.000054763354,0.000485448,0.000021730297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00050796644,0.000019918285,0.0004207485,0.00015052967,0.0002997331,0.000021917154,0.0012756892,0.000474368,0.98876566,0.00065364887,0.00035096332,0.007058862],"study_design_scores_gemma":[0.0011529682,0.0005127832,0.0020345731,0.0004492248,0.00008966983,0.000569848,0.0005624543,0.0013304846,0.9766755,0.0003512716,0.016087933,0.00018330631],"about_ca_topic_score_codex":0.000041461826,"about_ca_topic_score_gemma":0.0000029586006,"teacher_disagreement_score":0.023081178,"about_ca_system_score_codex":0.00014795971,"about_ca_system_score_gemma":0.00012361904,"threshold_uncertainty_score":0.58746547},"labels":[],"label_agreement":null},{"id":"W4401905228","doi":"10.1007/978-1-0716-4108-8_17","title":"Phagosome Isolation with Magnetic Beads and Purification of Toll-Like Receptor (TLR) Complexes in Phagosomes","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Phagosome; Endosome; Innate immune system; Cell biology; Phagocytosis; TLR3; Toll-like receptor; Biology; Macrophage; Chemistry; Immune system; Immunology; Biochemistry; Intracellular","score_opus":0.012653379273850646,"score_gpt":0.3272520302717272,"score_spread":0.3145986509978766,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401905228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.7910008,0.03192259,0.1757122,0.00037784345,0.00034365937,0.00036212016,0.000007708431,0.000038124184,0.0002349763],"genre_scores_gemma":[0.8312253,0.00080064865,0.16714583,0.00008472695,0.000014681658,0.00009819667,0.00022362704,0.000027755925,0.0003792521],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975703,0.0014931667,0.00039982883,0.00030562523,0.000019663836,0.00021144943],"domain_scores_gemma":[0.999356,0.0003343549,0.000076178556,0.00019142717,0.0000332243,0.000008824421],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009108662,0.00014518271,0.00030422636,0.00046576394,0.000026122794,0.000009871105,0.000106235224,0.0002593155,0.00011165145],"category_scores_gemma":[0.00010747719,0.00012209862,0.000035966536,0.00033846137,0.00025094138,0.000070942006,0.000041068277,0.0002163046,0.000016955999],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00020494887,0.000033338772,0.0019480116,0.00005140738,0.00003383645,0.0000040937375,0.00035482208,0.0000066623907,0.91990596,0.007119471,0.000013469379,0.070324],"study_design_scores_gemma":[0.000918329,0.00056351314,0.0061671715,0.000107843465,0.0000266632,0.000053288564,0.00019135434,0.00023353471,0.98158616,0.0019717035,0.00799987,0.00018055853],"about_ca_topic_score_codex":0.00007609847,"about_ca_topic_score_gemma":0.000022401826,"teacher_disagreement_score":0.07014345,"about_ca_system_score_codex":0.000041717438,"about_ca_system_score_gemma":0.000047282752,"threshold_uncertainty_score":0.49790373},"labels":[],"label_agreement":null},{"id":"W4401905307","doi":"10.1007/978-1-0716-4108-8_20","title":"The Application of Organoids in the Study of Antiviral Innate Immunity","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Innate immune system; Organoid; Biology; Immunity; Intrinsic immunity; Viral infection; Acquired immune system; Immunology; Immune system; Cell biology; Virus","score_opus":0.014175887829756975,"score_gpt":0.37452374566128716,"score_spread":0.36034785783153017,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4401905307","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9168929,0.0045486568,0.07744654,0.00017509656,0.00020038754,0.000455428,0.0000015573564,0.000009488392,0.00026995022],"genre_scores_gemma":[0.9977424,0.00009277652,0.0020272236,0.000022354867,0.0000036206504,0.00006460613,0.00001465638,0.000006425535,0.00002591018],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9931956,0.0060524833,0.00043538984,0.00014456981,0.000019743713,0.00015220724],"domain_scores_gemma":[0.99853635,0.0009468393,0.000093769995,0.00038977922,0.000031531486,0.0000017192907],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004313693,0.00008808586,0.0002067901,0.00017057772,0.0000490441,0.0000049991854,0.0003681107,0.00015914113,0.0000052580544],"category_scores_gemma":[0.00033676732,0.000050847775,0.00004755815,0.0005133863,0.00022785725,0.000021262977,0.000091626986,0.0003375464,0.0000063471425],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009282632,0.00010735092,0.0015710101,0.000011435995,0.0000509585,0.0000019609622,0.001989925,0.000004403009,0.9131324,0.0092186,0.000003988212,0.073815115],"study_design_scores_gemma":[0.0005332376,0.0004581956,0.011667355,0.000016243077,0.00002313054,0.000008991884,0.0023804528,0.00008738666,0.974634,0.0048808926,0.0052335775,0.00007655219],"about_ca_topic_score_codex":0.00030491952,"about_ca_topic_score_gemma":0.000053908767,"teacher_disagreement_score":0.08084953,"about_ca_system_score_codex":0.000014534796,"about_ca_system_score_gemma":0.00003682382,"threshold_uncertainty_score":0.20735121},"labels":[],"label_agreement":null},{"id":"W4403280188","doi":"10.3390/biom14101271","title":"Molecular Thumbprints: Biological Signatures That Measure Loss of Identity","year":2024,"lang":"en","type":"article","venue":"Biomolecules","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"National Heart, Lung, and Blood Institute; Canadian Institutes of Health Research; National Institutes of Health; McKnight Foundation","keywords":"Disease; Inflammation; Identity (music); Biology; Psychological resilience; Neuroscience; Bioinformatics; Immunology; Computational biology; Medicine; Psychology; Pathology; Psychotherapist","score_opus":0.01809756831878746,"score_gpt":0.26476540808827903,"score_spread":0.24666783976949158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403280188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9455398,0.04686609,0.005176017,0.00025101815,0.00056047743,0.00015208307,0.000018042638,0.0001366271,0.0012998567],"genre_scores_gemma":[0.99932915,0.00027457264,0.00004553382,0.000055745466,0.000014435793,0.000010003747,0.00005988819,0.000011840007,0.00019881713],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990739,0.00022993528,0.00020778454,0.00023143645,0.000057098216,0.00019981888],"domain_scores_gemma":[0.99958473,0.00007724152,0.0000531579,0.00021873057,0.000054770902,0.000011357497],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00030297495,0.00014069072,0.0001839608,0.00014046745,0.000053536947,0.000029002684,0.00023599395,0.00029224256,0.00028621982],"category_scores_gemma":[0.000095879084,0.00010513491,0.00016300059,0.00017740112,0.00034133237,0.00013466865,0.00008887724,0.00017001979,0.00041265466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000090427624,0.000035326575,0.00021480393,0.000036415822,0.00018016304,0.000048235543,0.00010570468,0.0000017002261,0.96022075,0.034448147,0.0002916316,0.0043266676],"study_design_scores_gemma":[0.00019633664,0.000078226265,0.0028132403,0.00009680781,0.000028587543,0.000041569416,0.00007886092,0.000004206736,0.9817929,0.0012278263,0.013511175,0.00013022931],"about_ca_topic_score_codex":0.000033026154,"about_ca_topic_score_gemma":0.000003465053,"teacher_disagreement_score":0.053789373,"about_ca_system_score_codex":0.000018749446,"about_ca_system_score_gemma":0.000045822388,"threshold_uncertainty_score":0.53039783},"labels":[],"label_agreement":null},{"id":"W4403316503","doi":"10.1007/s00441-024-03924-4","title":"A historical perspective of Kupffer cells in the context of infection","year":2024,"lang":"en","type":"review","venue":"Cell and Tissue Research","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Context (archaeology); Perspective (graphical); Kupffer cell; Biology; Computational biology; Pathology; Cell biology; Immunology; Medicine; Computer science","score_opus":0.07827306790969435,"score_gpt":0.39235901832180164,"score_spread":0.3140859504121073,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4403316503","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0010241402,0.9952216,0.0000013869601,0.000058745245,0.00022654631,0.00057510094,0.0000048354814,0.000004618825,0.0028830045],"genre_scores_gemma":[0.013825692,0.9774991,0.0000010749477,0.000001172801,0.00002793011,0.000052330543,0.0000149355,0.000012394442,0.008565317],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976985,0.0013895982,0.00041314747,0.00021495011,0.00007818949,0.00020565616],"domain_scores_gemma":[0.9988318,0.0006837911,0.00010567372,0.00022238406,0.00014824221,0.000008072775],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014913828,0.00013903853,0.0006991906,0.0005369603,0.000055380784,0.000009651467,0.00015247482,0.00037660514,0.00006910765],"category_scores_gemma":[0.00009338657,0.000083232764,0.00013823328,0.0004651478,0.0002195148,0.000029879635,0.00009672326,0.0008873225,0.00019332113],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014653191,0.00035763456,0.000008564769,0.0251667,0.00025751462,0.000030648287,0.008909273,5.7103062e-8,0.021428335,0.006466931,0.01758135,0.91964644],"study_design_scores_gemma":[0.00014603436,0.00027522427,0.000006716723,0.0015890481,0.00012038563,0.00002280935,0.00048263234,1.1419252e-7,0.009552448,0.000119228265,0.98761356,0.00007180286],"about_ca_topic_score_codex":0.0018143184,"about_ca_topic_score_gemma":0.000029310846,"teacher_disagreement_score":0.9700322,"about_ca_system_score_codex":0.00022088789,"about_ca_system_score_gemma":0.00019846956,"threshold_uncertainty_score":0.3855024},"labels":[],"label_agreement":null},{"id":"W4404279731","doi":"10.21608/ejchem.2024.319637.10500","title":"Genetic Polymorphism of Toll-Like Receptor 4 Gene (rs4986791) among Adult Patients with Acute Myeloid Leukemia","year":2024,"lang":"en","type":"article","venue":"Egyptian Journal of Chemistry","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Biotechnology Research Institute","funders":"","keywords":"Myeloid leukemia; Gene; Toll-like receptor; Polymorphism (computer science); Toll; Genetics; Medicine; Biology; Receptor; Immunology; Cancer research; Allele; Innate immune system","score_opus":0.0023292506232360363,"score_gpt":0.17874974928136475,"score_spread":0.17642049865812873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404279731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9947365,0.0038598944,0.00014730304,0.00010900792,0.0005968515,0.00007593625,0.00002171187,0.000019498011,0.00043333037],"genre_scores_gemma":[0.9962954,0.00028978407,0.0003755104,0.00003032976,0.00012158861,0.0000030175731,0.00005858451,0.0000282365,0.002797566],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878085,0.00006347931,0.00063539715,0.00016463474,0.00010849565,0.0002471738],"domain_scores_gemma":[0.9989847,0.00005052747,0.00041057525,0.00022212844,0.00028771523,0.00004437446],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00014349876,0.000197185,0.00033474303,0.00009685536,0.00006039286,0.000023221986,0.00026724453,0.00024589276,0.00086080737],"category_scores_gemma":[0.0000361967,0.00015255027,0.00017071258,0.00014287596,0.00019344756,0.00018652916,0.000037175814,0.00044406988,0.00006923648],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008184767,0.000044309963,0.0026211042,0.000089156674,0.0007902744,0.0000689025,0.00038252695,0.000014161121,0.9874752,0.0000038762937,0.00355644,0.0041355724],"study_design_scores_gemma":[0.001547155,0.00026300616,0.012018627,0.00040137838,0.00019800437,0.0004893823,0.00008672194,0.0000043914815,0.98080724,0.000016109041,0.003983162,0.00018482702],"about_ca_topic_score_codex":0.0000072687294,"about_ca_topic_score_gemma":4.2813548e-7,"teacher_disagreement_score":0.009397523,"about_ca_system_score_codex":0.00012023658,"about_ca_system_score_gemma":0.00036395103,"threshold_uncertainty_score":0.94252366},"labels":[],"label_agreement":null},{"id":"W4404479236","doi":"10.1016/b978-0-128-24465-4.00112-5","title":"Variable Lymphocyte Receptors: The Basis of Adaptive Immunity in Jawless Vertebrates","year":2024,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Acquired immune system; Biology; Lymphocyte; Immunity; Receptor; Immunology; Neuroscience; Immune system; Genetics","score_opus":0.011668918051867781,"score_gpt":0.21539600812878512,"score_spread":0.20372709007691733,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404479236","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00076036004,0.027764857,0.0000033925508,0.00006391844,0.001244763,0.0005325427,0.00004552076,0.00004525181,0.9695394],"genre_scores_gemma":[0.008167274,0.00079464633,0.000035571535,0.00007142185,0.00005039147,0.00005783518,0.00012033805,0.00006220331,0.99064034],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9983968,0.00023679441,0.00069054763,0.00031359328,0.000065320164,0.00029691914],"domain_scores_gemma":[0.99859625,0.00034121415,0.00029712933,0.0006302624,0.00012282256,0.00001229684],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00074295956,0.00038064973,0.00064144,0.00027079432,0.00012757709,0.000020342675,0.0004500777,0.0007217021,0.0011945749],"category_scores_gemma":[0.00004183998,0.00027691977,0.00022572449,0.000047058227,0.00037833943,0.000056813646,0.00023916483,0.00085668673,0.001216359],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00067511713,0.000024520814,0.0000036128872,0.00017558274,0.00095924543,0.000010343397,0.0019540996,0.000003299343,0.020701637,0.095437326,0.000613916,0.8794413],"study_design_scores_gemma":[0.0005678482,0.00013534211,0.000015513195,0.0013082917,0.0001951301,0.00002766366,0.00017983849,0.0000070208457,0.044427402,0.01649409,0.9363224,0.0003194414],"about_ca_topic_score_codex":0.000036630747,"about_ca_topic_score_gemma":0.00004849034,"teacher_disagreement_score":0.9357085,"about_ca_system_score_codex":0.0001879582,"about_ca_system_score_gemma":0.0003576482,"threshold_uncertainty_score":0.9999683},"labels":[],"label_agreement":null},{"id":"W4404564312","doi":"10.1126/sciadv.adq4785","title":"A potent proresolving mediator 17R-resolvin D2 from human macrophages, monocytes, and saliva","year":2024,"lang":"en","type":"article","venue":"Science Advances","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Canadian Institutes of Health Research; National University of Singapore; Yale University","keywords":"Saliva; CD14; Phagocytosis; CD163; Chemistry; Receptor; Monocyte; Biology; Macrophage; Biochemistry; Immunology; In vitro","score_opus":0.008773920950584192,"score_gpt":0.2704933472727134,"score_spread":0.2617194263221292,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404564312","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86773735,0.13008885,0.00012280997,0.00036392015,0.00086333026,0.000170309,0.000013928044,0.00013285867,0.0005066495],"genre_scores_gemma":[0.997698,0.0005889674,0.00038319337,0.000050363713,0.0000623627,0.000023222437,0.000029493693,0.000010126499,0.0011542719],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99878234,0.00007128228,0.00023811689,0.0004508197,0.00008884502,0.00036858965],"domain_scores_gemma":[0.9995116,0.00013813951,0.000058638005,0.00021583062,0.00004512854,0.00003064445],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00048795633,0.00014253985,0.00015630771,0.00019539247,0.0005181378,0.0001485506,0.0003025607,0.000076025666,0.0001764665],"category_scores_gemma":[0.00013873172,0.000111613925,0.00003577768,0.00033153553,0.00084008614,0.0009533672,0.00014473719,0.00018473131,0.00026068912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000026847547,0.0000110650835,0.00029996652,0.000017718376,0.000015037577,0.000013939505,0.00075696176,0.0000030130527,0.9390361,0.0008833377,0.00023920105,0.058696818],"study_design_scores_gemma":[0.00025292923,0.00010996821,0.0052769165,0.00012979867,0.00001820535,0.000024947962,0.0004863669,0.00006112006,0.91486627,0.0016473931,0.076940425,0.00018569134],"about_ca_topic_score_codex":0.000118800664,"about_ca_topic_score_gemma":0.000030069941,"teacher_disagreement_score":0.12996066,"about_ca_system_score_codex":0.00005513128,"about_ca_system_score_gemma":0.00013099473,"threshold_uncertainty_score":0.45514837},"labels":[],"label_agreement":null},{"id":"W4404659718","doi":"10.1016/j.biologicals.2024.101808","title":"The impact of LPS mutants on endotoxin masking in different detection systems","year":2024,"lang":"en","type":"article","venue":"Biologicals","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Advanced Micro Devices (Canada)","funders":"","keywords":"Masking (illustration); Mutant; Chemistry; Microbiology; Biology; Computational biology; Biochemistry; Gene","score_opus":0.01849848729144004,"score_gpt":0.2881980950023824,"score_spread":0.26969960771094237,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404659718","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9924011,0.0058744648,0.00008601167,0.00003074248,0.0004702595,0.00023866318,0.000007526637,0.00007102454,0.0008201817],"genre_scores_gemma":[0.99895465,0.00029653465,3.757689e-7,0.0000027231695,0.000024411922,0.00003508213,0.00000951299,0.0000068664563,0.0006698662],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990447,0.0003871147,0.00024341825,0.00013042847,0.000016854545,0.00017746522],"domain_scores_gemma":[0.99931926,0.00047591754,0.000060445127,0.00012941855,0.000009609611,0.000005342015],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034979108,0.0000998766,0.00016707068,0.00009674647,0.000056606375,0.000017302793,0.00009184426,0.00017104155,0.000046761972],"category_scores_gemma":[0.0001313701,0.000043187527,0.00009380288,0.00010330875,0.000067211266,0.000020374124,0.000023549042,0.00013659126,0.00010147374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023293438,0.000026605014,0.00049302564,0.000008618933,0.00006386666,0.0000033291456,0.000045741617,0.000026539876,0.98466045,0.00067094783,0.00015851184,0.013609414],"study_design_scores_gemma":[0.00042685727,0.0010228277,0.07772353,0.00024600685,0.000008975047,0.000041741332,0.00014540553,0.00030423643,0.9142007,0.00022850292,0.0055172336,0.00013397474],"about_ca_topic_score_codex":0.00013920279,"about_ca_topic_score_gemma":0.00000650138,"teacher_disagreement_score":0.077230506,"about_ca_system_score_codex":0.000055348755,"about_ca_system_score_gemma":0.00001156641,"threshold_uncertainty_score":0.17611362},"labels":[],"label_agreement":null},{"id":"W4404677900","doi":"10.1038/s41467-024-54674-4","title":"Promotion of TLR7-MyD88-dependent inflammation and autoimmunity in mice through stem-loop changes in Lnc-Atg16l1","year":2024,"lang":"en","type":"article","venue":"Nature Communications","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":23,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Natural Science Foundation of China","keywords":"Autoimmunity; Inflammation; TLR7; Immunology; Cancer research; Medicine; Biology; Cell biology; Immune system; Toll-like receptor; Innate immune system","score_opus":0.025133177765485182,"score_gpt":0.29711861306498044,"score_spread":0.27198543529949526,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4404677900","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.93850905,0.05288553,0.00003729242,0.006576554,0.0002865991,0.00051364367,0.00001653952,0.00007632866,0.0010984704],"genre_scores_gemma":[0.99378306,0.0049740034,0.00018458843,0.00002764514,0.000009849818,0.000088864865,0.00028209088,0.000013804067,0.00063608075],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9984165,0.0007308387,0.00043823605,0.00018323919,0.000050904273,0.00018029794],"domain_scores_gemma":[0.9986421,0.00042768935,0.00012748646,0.00070335565,0.00009213074,0.0000072576345],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008229274,0.00014168383,0.00023000337,0.00038925218,0.00011961272,0.000026898637,0.00043312213,0.0005469216,0.000034901885],"category_scores_gemma":[0.00013579818,0.00013742945,0.00003704741,0.0005051957,0.00018311458,0.00036466814,0.00025626327,0.0012477454,0.00003823233],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010123518,0.0001943764,0.00176373,0.00017746532,0.000074737356,0.000002376462,0.005550976,0.000014109579,0.9209824,0.038170766,0.0001496765,0.03281812],"study_design_scores_gemma":[0.0023470228,0.0003298501,0.090092935,0.0017206707,0.00010825418,0.00010683897,0.002978209,0.0012186929,0.82423955,0.0022300738,0.07402852,0.0005993679],"about_ca_topic_score_codex":0.00032708448,"about_ca_topic_score_gemma":0.003600163,"teacher_disagreement_score":0.096742876,"about_ca_system_score_codex":0.00013639286,"about_ca_system_score_gemma":0.00008891469,"threshold_uncertainty_score":0.56042105},"labels":[],"label_agreement":null},{"id":"W4405485646","doi":"10.1016/j.biopha.2024.117755","title":"A novel serous ovarian carcinoma model induced by DMBA: Results from OncoTherad® (MRB-CFI-1) immunotherapy preclinical testing","year":2024,"lang":"en","type":"article","venue":"Biomedicine & Pharmacotherapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Fundação de Amparo à Pesquisa do Estado de São Paulo; Michael Smith Health Research BC","keywords":"Ovarian carcinoma; DMBA; Serous fluid; Medicine; Immunotherapy; Oncology; Cancer research; Internal medicine; Ovarian cancer; Cancer; Carcinogenesis","score_opus":0.0648656013213465,"score_gpt":0.33898679699980794,"score_spread":0.27412119567846144,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405485646","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9527468,0.028902207,0.0074823704,0.0050675143,0.002779249,0.00085248455,0.00055636675,0.0007092973,0.0009036738],"genre_scores_gemma":[0.9893076,0.0008686675,0.0011705724,0.002502558,0.000669359,0.000093599236,0.0009797792,0.00015046899,0.004257412],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99661076,0.00033149947,0.001260633,0.0009162669,0.00017611505,0.0007047062],"domain_scores_gemma":[0.99784446,0.0010417721,0.00028303624,0.00061743293,0.00013109579,0.00008223306],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0010699884,0.0005598274,0.0006682491,0.00035848148,0.00026082277,0.000082502964,0.0005407319,0.0005456038,0.0006272228],"category_scores_gemma":[0.00011511755,0.00046094554,0.00021107554,0.0006766211,0.00025058002,0.00030770747,0.000052578307,0.00084999297,0.00039521084],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0031494822,0.00027758535,0.00004943567,0.000018961424,0.0006039978,0.000014683333,0.0024879416,0.000012097927,0.8483273,0.000029322555,0.019783823,0.12524542],"study_design_scores_gemma":[0.019298742,0.00105574,0.0010519248,0.00032901514,0.00014009031,0.00009466017,0.00010009139,0.012259664,0.70191115,0.00014432696,0.26287556,0.0007390203],"about_ca_topic_score_codex":0.0016621578,"about_ca_topic_score_gemma":0.0000059242166,"teacher_disagreement_score":0.24309173,"about_ca_system_score_codex":0.0001782439,"about_ca_system_score_gemma":0.00042185004,"threshold_uncertainty_score":0.99978423},"labels":[],"label_agreement":null},{"id":"W4405843326","doi":"10.1186/s10020-024-01052-x","title":"Molecular profiles of blood from numerous species that differ in sensitivity to acute inflammation","year":2024,"lang":"en","type":"article","venue":"Molecular Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal; Hospital for Sick Children; Centre Hospitalier Universitaire Sainte-Justine","funders":"National Institute of General Medical Sciences; Defense Advanced Research Projects Agency; National Institutes of Health; Open Medicine Foundation; U.S. Department of Energy","keywords":"Inflammation; Biology; Lipopolysaccharide; Sepsis; Transcriptome; Immunology; Gene; Autophagy; Cell biology; Apoptosis; Gene expression; Genetics","score_opus":0.007809828647201919,"score_gpt":0.23193295556420482,"score_spread":0.2241231269170029,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405843326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9851074,0.004900545,0.005265883,0.0034605283,0.00038767591,0.00035652125,0.000019416879,0.00006022704,0.0004417543],"genre_scores_gemma":[0.9989619,0.0000854348,0.000082955565,0.00015489184,0.000038028502,0.000024288358,0.00031874064,0.000020332858,0.00031339008],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987564,0.0003162545,0.00034443403,0.000267907,0.00009590836,0.00021907141],"domain_scores_gemma":[0.99945533,0.00013462585,0.000063612264,0.0002836394,0.000043026346,0.000019792897],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033619508,0.00017846777,0.00035316244,0.00031545718,0.000026396696,0.0000091874335,0.00009455445,0.00016932783,0.00020713502],"category_scores_gemma":[0.00014396274,0.00014505904,0.000068722125,0.00027601756,0.00011752864,0.000077769895,0.00006523427,0.00021097205,0.00012355861],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014000013,0.000025687292,0.00028012964,0.0000397131,0.00033100357,0.00052939646,0.0014370478,0.000022416794,0.9924356,0.0013932983,0.0001167069,0.003249027],"study_design_scores_gemma":[0.0007452648,0.00017664558,0.019381823,0.00042170144,0.00020374791,0.000045947054,0.00014634147,0.000043238786,0.97568125,0.00024795457,0.0027717454,0.00013433589],"about_ca_topic_score_codex":0.00023937171,"about_ca_topic_score_gemma":0.000018559549,"teacher_disagreement_score":0.019101694,"about_ca_system_score_codex":0.000027277514,"about_ca_system_score_gemma":0.000038210746,"threshold_uncertainty_score":0.5915336},"labels":[],"label_agreement":null},{"id":"W4405965731","doi":"10.3390/vaccines13010033","title":"Transcriptional Systems Vaccinology Approaches for Vaccine Adjuvant Profiling","year":2025,"lang":"en","type":"article","venue":"Vaccines","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lakehead University; University of Saskatchewan","funders":"","keywords":"Computational biology; Adjuvant; Immune system; Biology; Systems biology; Vaccine adjuvant; Innate immune system; Gene; Mechanism (biology); Immunology; Genetics","score_opus":0.029678456037812825,"score_gpt":0.249279681844984,"score_spread":0.21960122580717117,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4405965731","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.90661615,0.051229328,0.02818505,0.0033765933,0.005411735,0.0022214437,0.000049262868,0.00036214638,0.0025483195],"genre_scores_gemma":[0.9886722,0.000120523655,0.00020834293,0.00009514884,0.00009436573,0.00040571217,0.00040885157,0.0000163935,0.0099784825],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99876,0.00013606633,0.00044716112,0.00030057196,0.000020288928,0.00033591667],"domain_scores_gemma":[0.9993105,0.00020948172,0.00009982752,0.00024786228,0.00012262838,0.000009722601],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003177712,0.00019003419,0.0003571704,0.00027773477,0.00023128581,0.000021827995,0.00020300527,0.00027891502,0.00006480006],"category_scores_gemma":[0.00010763523,0.0001581953,0.00012540181,0.00017821783,0.000012463039,0.0001268196,0.000031624342,0.00014803548,0.00008860654],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0036824974,0.00021905675,0.004716845,0.0005172781,0.0007900971,0.0000016809984,0.00029036845,0.00043031102,0.7541127,0.19385879,0.014453504,0.026926829],"study_design_scores_gemma":[0.010548605,0.00046397644,0.047704842,0.00020820778,0.00035955783,0.000118080054,0.0016131832,0.0021162007,0.5893933,0.0026757605,0.34415373,0.0006445149],"about_ca_topic_score_codex":0.000020103591,"about_ca_topic_score_gemma":0.000008977002,"teacher_disagreement_score":0.32970023,"about_ca_system_score_codex":0.000034149005,"about_ca_system_score_gemma":0.00008966509,"threshold_uncertainty_score":0.6451017},"labels":[],"label_agreement":null},{"id":"W4406442022","doi":"10.1016/j.ysur.2014.03.062","title":"10.1016/j.ysur.2014.03.062","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":34,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Antagonist; Sepsis; Internal medicine; Randomized controlled trial; Receptor","score_opus":0.003830681444471306,"score_gpt":0.1679416365442671,"score_spread":0.1641109550997958,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406442022","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.009664855,0.0005561338,8.157377e-7,0.00033592194,0.000006422986,0.00016759688,0.000006976684,0.00013219498,0.98912907],"genre_scores_gemma":[0.0012143352,0.0000017438368,0.000014159223,0.000048914746,0.000039781586,0.000016647966,0.00010008871,0.000016215972,0.9985481],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99916106,0.00014419615,0.00020610438,0.00017820453,0.00002670004,0.0002837373],"domain_scores_gemma":[0.99955827,0.00006860858,0.000034087687,0.00028547642,0.00003210866,0.000021442458],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019557776,0.00012892506,0.0001700625,0.000084439795,0.00012499376,0.000015434029,0.00017668588,0.0001597295,0.9986495],"category_scores_gemma":[0.00003368854,0.0001193741,0.000066451976,0.0000846004,0.000050194234,0.0000985335,0.000031254032,0.00013670302,0.9995867],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044666155,0.000033557753,9.960536e-8,0.0000025770396,0.000044192242,0.0000020402726,0.000036272362,0.000009819344,0.03616962,0.0000024315411,0.46443006,0.49882266],"study_design_scores_gemma":[0.00041717585,0.00017991947,0.00008400079,0.000010371403,0.000016429452,0.000029655352,0.0000017569348,0.000004204168,0.026916206,0.0000047515464,0.9721839,0.0001516486],"about_ca_topic_score_codex":0.000021887608,"about_ca_topic_score_gemma":1.0873879e-7,"teacher_disagreement_score":0.5077538,"about_ca_system_score_codex":0.00002351149,"about_ca_system_score_gemma":0.00003134127,"threshold_uncertainty_score":0.48679343},"labels":[],"label_agreement":null},{"id":"W4406471991","doi":"10.1016/s1634-6939(20)30314-8","title":"10.1016/s1634-6939(20)30314-8","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Business","score_opus":0.0037172771970906764,"score_gpt":0.16424960666580393,"score_spread":0.16053232946871326,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406471991","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008237866,0.0005129036,0.0000010905977,0.0004181473,0.0000065416557,0.00018351959,0.000008963095,0.00014015728,0.9904908],"genre_scores_gemma":[0.0008295933,0.000001144111,0.000015594302,0.00005099536,0.000044688473,0.00002125522,0.00013037151,0.000017429318,0.9988889],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991074,0.00013957277,0.00022280081,0.0001912822,0.00002914835,0.0003097489],"domain_scores_gemma":[0.9995389,0.0000625334,0.0000357742,0.0003002241,0.000039214436,0.000023335926],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018527168,0.00014012017,0.00018050676,0.00009562526,0.00013827886,0.0000169262,0.00019456266,0.00017203514,0.9982768],"category_scores_gemma":[0.00003955864,0.00013095673,0.00007102065,0.00013450973,0.00005459158,0.00010754211,0.00003498256,0.00014752094,0.9990777],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00054178707,0.000039984694,7.2554066e-8,0.000003162416,0.000051276103,0.0000029096043,0.000041202456,0.00001278929,0.047725778,0.0000023145396,0.40466383,0.5469149],"study_design_scores_gemma":[0.00047511616,0.00019385325,0.0000500796,0.000014610674,0.000018755994,0.000039393628,0.0000020076704,0.000005267373,0.028412934,0.0000055577857,0.9706177,0.00016472132],"about_ca_topic_score_codex":0.000018390714,"about_ca_topic_score_gemma":1.422281e-7,"teacher_disagreement_score":0.56595385,"about_ca_system_score_codex":0.000027801358,"about_ca_system_score_gemma":0.00003464133,"threshold_uncertainty_score":0.5340261},"labels":[],"label_agreement":null},{"id":"W4406571238","doi":"10.1016/j.ynpm.2014.06.019","title":"10.1016/j.ynpm.2014.06.019","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Escherichia coli; Host (biology); Sepsis; Microbiology; Homeostasis; Host resistance; Biology; Immunology; Neonatal sepsis; Cell biology; Genetics; Gene","score_opus":0.0036295346638558815,"score_gpt":0.16715697515939132,"score_spread":0.16352744049553544,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406571238","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011599814,0.0005565026,0.0000011395418,0.00036285393,0.0000053992044,0.00017785713,0.0000075667435,0.0001394432,0.9871494],"genre_scores_gemma":[0.0010210886,0.0000017812417,0.000014774218,0.000051456824,0.000039527124,0.000016924823,0.00013747768,0.000016621136,0.9987003],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991664,0.0001353469,0.00020546147,0.00018069417,0.000026758642,0.0002852892],"domain_scores_gemma":[0.99955183,0.00006243285,0.00003432891,0.00029376033,0.000036483405,0.000021183432],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00018391227,0.0001291671,0.00016929535,0.000089433124,0.000119357064,0.000016506583,0.00018412768,0.00016327476,0.9980806],"category_scores_gemma":[0.000035678644,0.00011982657,0.000067030385,0.00009882486,0.000048107006,0.000105625186,0.000033032957,0.0001398875,0.99950284],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034122114,0.000032113545,1.5109131e-7,0.0000026026678,0.00004326594,0.0000017364637,0.000036800368,0.000008416034,0.031423878,0.000002872153,0.55594426,0.4121627],"study_design_scores_gemma":[0.00043606717,0.00015105041,0.00010343541,0.000011812921,0.000016485492,0.000031433246,0.0000017940162,0.000004372908,0.0213317,0.0000051501265,0.97775364,0.00015308389],"about_ca_topic_score_codex":0.000020757683,"about_ca_topic_score_gemma":8.484209e-8,"teacher_disagreement_score":0.42180938,"about_ca_system_score_codex":0.000021355294,"about_ca_system_score_gemma":0.00003610371,"threshold_uncertainty_score":0.48863855},"labels":[],"label_agreement":null},{"id":"W4406579505","doi":"10.1016/s1541-9800(10)70564-0","title":"10.1016/s1541-9800(10)70564-0","year":2000,"lang":"en","type":"article","venue":"Time to knit","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Primary (astronomy); Tumor necrosis factor alpha; Medicine; Immunology; Physics","score_opus":0.004090242220849641,"score_gpt":0.16637059622232434,"score_spread":0.1622803540014747,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4406579505","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.008072815,0.0005262853,8.481166e-7,0.0003431721,0.0000059741956,0.00018275977,0.000008430987,0.0001431543,0.9907166],"genre_scores_gemma":[0.0008318886,0.000001347674,0.0000152301545,0.0000464314,0.000045606335,0.00002189202,0.00013369725,0.000018445315,0.99888545],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990671,0.00014902756,0.00023419682,0.00020025627,0.000030707568,0.000318662],"domain_scores_gemma":[0.99950504,0.00007020262,0.000039096314,0.00031567094,0.00004547116,0.000024509773],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001941796,0.000147956,0.00018996373,0.00009762949,0.00014429579,0.000018166927,0.00020373659,0.00018376127,0.9992249],"category_scores_gemma":[0.00005234832,0.00013844075,0.00007634427,0.00013667301,0.00005723885,0.00011158417,0.00003746783,0.00014533396,0.99949235],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000672904,0.000040358194,4.417935e-8,0.0000033114075,0.00005210627,0.0000026921346,0.000041618598,0.000009734895,0.029537618,0.000002184096,0.50576144,0.46387595],"study_design_scores_gemma":[0.0005119474,0.00022300088,0.000059972197,0.000015419397,0.000020090323,0.00003281442,0.0000022558359,0.0000058207115,0.02742368,0.0000052071427,0.9715267,0.0001730971],"about_ca_topic_score_codex":0.000019365301,"about_ca_topic_score_gemma":1.1981531e-7,"teacher_disagreement_score":0.4657652,"about_ca_system_score_codex":0.000029508463,"about_ca_system_score_gemma":0.000037012982,"threshold_uncertainty_score":0.56454504},"labels":[],"label_agreement":null},{"id":"W4407031185","doi":"10.1097/01.ccm.0001105204.36265.a1","title":"1635: INCIDENCE OF ENDOTOXIC SEPTIC SHOCK IN THE US AND CANADA","year":2025,"lang":"en","type":"article","venue":"Critical Care Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Septic shock; Endotoxic shock; Incidence (geometry); Shock (circulatory); Intensive care medicine; Internal medicine; Sepsis","score_opus":0.00626764796807706,"score_gpt":0.2681775501286279,"score_spread":0.2619099021605508,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407031185","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97718227,0.01341828,0.00004431739,0.005673894,0.00028909152,0.000113727554,0.0000024608369,0.0000045120805,0.003271466],"genre_scores_gemma":[0.99867946,0.000044577653,0.000003506001,0.0010743432,0.000011129194,0.00000951227,0.000012456948,0.0000017573104,0.00016325474],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9993648,0.0001798509,0.00019818882,0.00008990677,0.000036642083,0.0001306187],"domain_scores_gemma":[0.9989606,0.0008074169,0.000014277497,0.00013595665,0.000074705655,0.0000070319666],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020874171,0.000060679584,0.0001578869,0.00005970504,0.000048789698,0.0000017859256,0.00010556165,0.000062691375,0.00010367989],"category_scores_gemma":[0.001324297,0.00003840527,0.000011142844,0.00010138416,0.0003516106,0.000023042892,0.000028676584,0.00016141284,0.0000020325465],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053486094,0.000067905356,0.05591535,0.0013350054,0.00007660605,0.00017457404,0.008774368,0.000004214757,0.82996655,0.06380256,0.01745908,0.021888947],"study_design_scores_gemma":[0.005382465,0.0012021061,0.43793365,0.0020390623,0.0003470197,0.00031476424,0.061480016,0.000036894005,0.39943802,0.0021946009,0.0892311,0.00040028038],"about_ca_topic_score_codex":0.087192155,"about_ca_topic_score_gemma":0.08095342,"teacher_disagreement_score":0.43052852,"about_ca_system_score_codex":0.00003583118,"about_ca_system_score_gemma":0.00018207464,"threshold_uncertainty_score":0.93581676},"labels":[],"label_agreement":null},{"id":"W4407262016","doi":"10.3389/fimmu.2024.1505008","title":"CD109, a master regulator of inflammatory responses","year":2025,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":18,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; McGill University","keywords":"Master regulator; Regulator; Medicine; Immunology; Biology; Genetics; Transcription factor","score_opus":0.015657732872732973,"score_gpt":0.2630971416846714,"score_spread":0.24743940881193843,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407262016","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003345844,0.9918981,0.00016176002,0.000031707285,0.005239843,0.0009597032,0.00004929452,0.00006673676,0.0012582416],"genre_scores_gemma":[0.000036530615,0.9795507,0.00030932017,0.000018902332,0.000026406635,0.00023475818,0.00031354828,0.000048493857,0.019461337],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99468416,0.0022442827,0.0018155263,0.0005681167,0.00005201635,0.0006359105],"domain_scores_gemma":[0.99726367,0.00063815515,0.00089438766,0.00109434,0.00009681197,0.00001265786],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0007656456,0.0006032361,0.003097297,0.00240194,0.0000894582,0.000010728501,0.000866564,0.0020662155,0.00022614936],"category_scores_gemma":[0.00060107955,0.00055106304,0.0006315715,0.00066590664,0.0006728449,0.00013229168,0.0003505324,0.0010555865,0.00023038773],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010692469,0.00010422967,0.00012421705,0.008902329,0.0016303359,0.000027502576,0.00024444732,3.9431413e-7,0.0010378496,0.0009039824,0.010501569,0.9754539],"study_design_scores_gemma":[0.00093846495,0.00012637858,0.00011585876,0.010357192,0.00038828203,0.00007852485,0.00013143026,3.0391146e-7,0.0014844938,0.00016700852,0.9857987,0.0004133743],"about_ca_topic_score_codex":0.000017967992,"about_ca_topic_score_gemma":0.00000403565,"teacher_disagreement_score":0.9752971,"about_ca_system_score_codex":0.00025798182,"about_ca_system_score_gemma":0.0011702747,"threshold_uncertainty_score":0.9996941},"labels":[],"label_agreement":null},{"id":"W4407748267","doi":"10.3390/vetsci12020186","title":"Differential Expression of Key Immune Markers in the Intestinal Tract of Developing Chick Embryos","year":2025,"lang":"en","type":"article","venue":"Veterinary Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"National Institute of Food and Agriculture; South Carolina Department of Agriculture; Clemson University; U.S. Department of Agriculture","keywords":"Biology; Immune system; Cecum; Innate immune system; Embryo; Immunology; Immunity; Gene expression; Chemokine; Interleukin 22; Gene; Cell biology; Cytokine; Interleukin; Genetics","score_opus":0.024838461056567646,"score_gpt":0.2849085770195061,"score_spread":0.2600701159629385,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407748267","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997193,0.0006247672,0.00027990143,0.0001994505,0.00029062346,0.000110929715,9.779071e-7,0.0000060964635,0.0012942555],"genre_scores_gemma":[0.9995842,0.000040432195,0.00021395825,0.000015275258,0.0000029547973,0.0000071426985,0.0000050058143,0.0000012340109,0.000129776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990713,0.0003244334,0.00031235593,0.00011692137,0.000041445688,0.0001335444],"domain_scores_gemma":[0.99945337,0.000273222,0.00012671802,0.00012103022,0.000023511642,0.0000021375556],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00055040885,0.000071125476,0.00014502527,0.00019168938,0.00011846771,0.00000797704,0.0003727277,0.000056678186,0.00007829229],"category_scores_gemma":[0.000120750796,0.000044985805,0.00004409131,0.00031442774,0.0003918194,0.00012459583,0.000083745144,0.00010173003,0.0000041984667],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029283174,0.00004548958,0.0020348202,0.00003376077,0.0000054803145,0.0000016703787,0.00070993224,0.000003988503,0.9926602,0.00045790058,0.000029330726,0.0037245578],"study_design_scores_gemma":[0.0003487693,0.00053057825,0.3461653,0.0003957935,0.0000052838686,0.000044144323,0.0013286747,0.000023517669,0.65034723,0.00012990789,0.000620993,0.000059791953],"about_ca_topic_score_codex":0.00006164147,"about_ca_topic_score_gemma":0.0000011660092,"teacher_disagreement_score":0.3441305,"about_ca_system_score_codex":0.000008994806,"about_ca_system_score_gemma":0.000098508695,"threshold_uncertainty_score":0.18344678},"labels":[],"label_agreement":null},{"id":"W4407941138","doi":"10.3389/fmicb.2025.1540534","title":"Determining the Bordetella LPS structural features that influence TLR4 downstream signaling","year":2025,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Downstream (manufacturing); TLR4; Cell biology; Signal transduction; Biology; Microbiology; Chemistry; Computational biology; Business","score_opus":0.003911819079433438,"score_gpt":0.22292989335420768,"score_spread":0.21901807427477424,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407941138","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9895386,0.006110843,0.00028824396,0.00045345345,0.002608115,0.00032873434,0.000014168915,0.00005237125,0.00060548226],"genre_scores_gemma":[0.9967646,0.00012006108,0.00047213817,0.0006675832,0.000018483932,0.000024282139,0.00016108333,0.000011673917,0.0017600714],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981917,0.0005186279,0.0003844154,0.00036049212,0.000015986845,0.0005287501],"domain_scores_gemma":[0.99914855,0.00025740822,0.00015439668,0.00036699933,0.000063428524,0.000009245719],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00035663115,0.00025452836,0.00037743934,0.0003117241,0.00032907652,0.000032734024,0.0005493585,0.0004658282,0.0000623296],"category_scores_gemma":[0.00017898977,0.00018258685,0.000106216816,0.00026139212,0.0005088601,0.00012044156,0.00015590953,0.0005747259,0.000044865166],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034132018,0.000016587497,0.12881239,0.00001989087,0.00016665363,0.0000046341897,0.0006930748,0.000099854464,0.8352756,0.00019965356,0.013460929,0.020909447],"study_design_scores_gemma":[0.002205176,0.00011061869,0.1441233,0.00013821332,0.0000675497,0.00009552896,0.0012457662,0.0000151971635,0.77453846,0.00072713144,0.076328404,0.00040464464],"about_ca_topic_score_codex":0.00005932441,"about_ca_topic_score_gemma":0.00003570963,"teacher_disagreement_score":0.06286748,"about_ca_system_score_codex":0.000096678246,"about_ca_system_score_gemma":0.00010044968,"threshold_uncertainty_score":0.7445676},"labels":[],"label_agreement":null},{"id":"W4407952683","doi":"10.1016/j.vetmic.2025.110446","title":"Mycoplasma ovipnuemoniae impairs the immune response of sheep and suppresses neutrophil function by inhibiting S100A9","year":2025,"lang":"en","type":"article","venue":"Veterinary Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"","keywords":"Biology; Immune system; S100A9; Mycoplasma; Microbiology; Immunology; Function (biology); Inflammation; Cell biology","score_opus":0.006645220506176997,"score_gpt":0.22206118105841957,"score_spread":0.21541596055224257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4407952683","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9829099,0.014508857,0.000092008435,0.0011392462,0.0007343734,0.0002990055,0.00006072325,0.000059871934,0.00019599323],"genre_scores_gemma":[0.99737114,0.0004956932,0.000021985365,0.00017194462,0.000013126975,0.000034563516,0.00019897762,0.000015323007,0.0016772524],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975412,0.0011983057,0.00054974755,0.00032790413,0.000013803553,0.00036905613],"domain_scores_gemma":[0.99854046,0.0008010423,0.00022474036,0.00034309595,0.00007999458,0.00001066467],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072179304,0.00023879022,0.0003728441,0.00020932233,0.0003321048,0.000016354095,0.00024012495,0.00035720968,0.0001330202],"category_scores_gemma":[0.00016490008,0.00018308252,0.0001038946,0.00020957465,0.00061316515,0.00011619842,0.00029726353,0.0003074577,0.000059561873],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009392041,0.000056702003,0.00012475376,0.000063936626,0.00016509416,0.0000063840394,0.00027447322,0.0000031535917,0.984183,0.00019079183,0.0034441166,0.002095535],"study_design_scores_gemma":[0.0013805662,0.0014157522,0.003709769,0.00008126274,0.00006552899,0.0009326453,0.00034238305,0.0000029757273,0.9040374,0.00005078707,0.08781427,0.00016665684],"about_ca_topic_score_codex":0.000059994814,"about_ca_topic_score_gemma":0.0000015689765,"teacher_disagreement_score":0.08437015,"about_ca_system_score_codex":0.000035252753,"about_ca_system_score_gemma":0.00007693461,"threshold_uncertainty_score":0.7465888},"labels":[],"label_agreement":null},{"id":"W4408164934","doi":"10.1016/j.jcmgh.2025.101491","title":"Attenuating ABHD17 Isoforms Augments the S-acylation and Function of NOD2 and a Subset of Crohn’s Disease-associated NOD2 Variants","year":2025,"lang":"en","type":"article","venue":"Cellular and Molecular Gastroenterology and Hepatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University; St. Michael's Hospital","funders":"Canadian Institutes of Health Research; National Institutes of Health; National Cancer Institute; Kenneth Rainin Foundation; Dalhousie Medical Research Foundation","keywords":"NOD2; Crohn's disease; Gene isoform; Acylation; Disease; Medicine; Function (biology); Biology; Genetics; Internal medicine; Gene; Biochemistry","score_opus":0.005028225741499078,"score_gpt":0.20336244368389814,"score_spread":0.19833421794239905,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408164934","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9911482,0.00420737,0.003549689,0.00063259027,0.0001614549,0.00023456528,0.0000149575635,0.0000101070655,0.000041106014],"genre_scores_gemma":[0.9989833,0.00047303762,0.000020858242,0.00031515624,0.0000030390433,0.000015398062,0.000110696565,0.0000068470413,0.00007165788],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99875337,0.0003803732,0.00035685056,0.00024763015,0.000026531596,0.0002352428],"domain_scores_gemma":[0.9994531,0.00008815077,0.00021779018,0.00015273852,0.00006593245,0.000022244289],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00033533655,0.00015157861,0.00034033452,0.00013641742,0.00019293593,0.00000791482,0.000061719176,0.0002122695,0.000013775746],"category_scores_gemma":[0.000089512294,0.00012176733,0.00004271544,0.00006216957,0.00054437475,0.00006489077,0.0001263703,0.00016231507,8.558339e-7],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0029347201,0.00008719584,0.47849032,0.00013112821,0.0005164059,0.000016775586,0.0003930633,0.000002216519,0.51145715,0.0024057939,0.00007318504,0.0034920366],"study_design_scores_gemma":[0.0028699522,0.00048674078,0.96845937,0.000070074144,0.00039088956,0.000050031573,0.00017436456,0.0003941838,0.025734976,0.0010050008,0.00027151755,0.00009293043],"about_ca_topic_score_codex":0.000048279697,"about_ca_topic_score_gemma":0.000030239074,"teacher_disagreement_score":0.48996902,"about_ca_system_score_codex":0.000007947049,"about_ca_system_score_gemma":0.000027729975,"threshold_uncertainty_score":0.49655277},"labels":[],"label_agreement":null},{"id":"W4408272815","doi":"10.21203/rs.3.rs-6122641/v1","title":"Rehydration rescues Il22-/- mice from lethal Citrobacter rodentium infection","year":2025,"lang":"en","type":"preprint","venue":"Research Square","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research","funders":"Wellcome Trust","keywords":"Citrobacter rodentium; Citrobacter; Microbiology; Biology; Enterobacteriaceae; Escherichia coli; Pathogen; Genetics","score_opus":0.03985029715838519,"score_gpt":0.36600985727624347,"score_spread":0.3261595601178583,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408272815","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.980704,0.004580968,0.0007046659,0.0014124534,0.002739975,0.0012477135,0.00022811233,0.0002313384,0.008150793],"genre_scores_gemma":[0.9637358,0.0016256643,0.00009040547,0.000040938754,0.00040938056,0.00031495374,0.0065524857,0.00003180332,0.027198523],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99480015,0.0029214171,0.00059408665,0.0007890806,0.00023282168,0.00066242047],"domain_scores_gemma":[0.9973606,0.0006538088,0.00018856376,0.0009374994,0.00082783593,0.000031686843],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity","insufficient_payload"],"category_scores_codex":[0.0015997288,0.00032977638,0.00045139255,0.0008975735,0.00052052905,0.000199225,0.00045618656,0.0014577735,0.0011208302],"category_scores_gemma":[0.0008364642,0.00032608645,0.00027053084,0.00036343557,0.00022130847,0.0002572447,0.0011466906,0.0028483872,0.0016951095],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0020836503,0.00031883168,0.0041387863,0.0008530044,0.000857806,0.000032615415,0.002289361,0.00021577504,0.92745036,0.0011536332,0.047990747,0.012615457],"study_design_scores_gemma":[0.0015803727,0.00030654753,0.0749998,0.0022500928,0.00012211032,0.000015685351,0.0003619639,0.00013299976,0.7293729,0.004625061,0.18555497,0.0006774872],"about_ca_topic_score_codex":0.008067629,"about_ca_topic_score_gemma":0.0005847016,"teacher_disagreement_score":0.19807743,"about_ca_system_score_codex":0.00040972032,"about_ca_system_score_gemma":0.00048348086,"threshold_uncertainty_score":0.9999191},"labels":[],"label_agreement":null},{"id":"W4408345274","doi":"10.1159/000544989","title":"Targeted Rapid Endotoxin Adsorption (TREA): can we bring precision medicine to sepsis?","year":2025,"lang":"en","type":"review","venue":"Blood Purification","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tornado Spectral Systems (Canada)","funders":"","keywords":"Hemofiltration; Sepsis; Septic shock; Medicine; Intensive care medicine; Extracorporeal; Immunology; Hemodialysis; Internal medicine","score_opus":0.02620430932972118,"score_gpt":0.2969591398286553,"score_spread":0.2707548304989341,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408345274","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009947551,0.99383396,0.0003595149,0.0008743673,0.001143229,0.0023522358,0.000058577763,0.00018926941,0.0010893634],"genre_scores_gemma":[0.00029437305,0.9838088,0.00013030965,0.00006586766,0.00017014865,0.0005368991,0.00435032,0.00004626039,0.010596985],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963889,0.0010822335,0.0012645762,0.0007320742,0.000106986576,0.0004252288],"domain_scores_gemma":[0.9976357,0.0005495696,0.00066484505,0.00092727505,0.00017745468,0.000045136596],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00081763277,0.0005360867,0.0013715047,0.00107587,0.00019362374,0.000031121974,0.0005111795,0.00089010113,0.00062095304],"category_scores_gemma":[0.0007238214,0.0004528351,0.00031910834,0.000855711,0.000073569456,0.000120211116,0.00010057656,0.0005239761,0.0012612336],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000060283463,0.0000919663,7.4819184e-7,0.0028978006,0.00033489036,0.0000016068633,0.00027712304,8.9002657e-7,0.03202744,0.00023047229,0.0049027423,0.95917404],"study_design_scores_gemma":[0.00070980925,0.00016710852,0.000039545735,0.014109269,0.0013859348,0.000047255755,0.00004048184,6.246881e-7,0.024491325,0.000044264165,0.95858204,0.00038232622],"about_ca_topic_score_codex":0.00008588564,"about_ca_topic_score_gemma":0.000012235398,"teacher_disagreement_score":0.95879173,"about_ca_system_score_codex":0.00014965236,"about_ca_system_score_gemma":0.00039357442,"threshold_uncertainty_score":0.99979234},"labels":[],"label_agreement":null},{"id":"W4408402627","doi":"10.1371/journal.pone.0319404","title":"Evaluating the protective effects of the Toll-like receptor (TLR) 21 ligand, CpG ODN, against necrotic enteritis in broiler chickens","year":2025,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Science Centre for Human and Animal Health; Canadian Animal Health Institute; McMaster University; University of Guelph","funders":"","keywords":"Broiler; Clostridium perfringens; Ileum; Jejunum; Biology; CpG Oligodeoxynucleotide; CD163; Immune system; Lymphocyte; Immunology; Internal medicine; Andrology; Gene expression; Medicine; Endocrinology; DNA methylation; Gene; Animal science","score_opus":0.02069260928643453,"score_gpt":0.2516409036602151,"score_spread":0.23094829437378056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408402627","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9948708,0.0014189912,0.000018299934,0.0011276269,0.0003673577,0.0016242667,0.0000047691024,0.000023209279,0.00054472097],"genre_scores_gemma":[0.99644893,0.00010842746,0.000035404442,0.0002990596,0.000018463852,0.00043868079,0.000014460274,0.000010729205,0.0026258195],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982843,0.0008843704,0.00033844702,0.00019010232,0.000068444475,0.00023437332],"domain_scores_gemma":[0.99892,0.0004554796,0.00015320595,0.00036778202,0.000097985496,0.0000055497694],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005216951,0.00013466112,0.00027638135,0.000093662115,0.00020497054,0.000013278171,0.00026494762,0.00016625086,0.000053874704],"category_scores_gemma":[0.001022482,0.00008722938,0.00008575913,0.00028138424,0.00015678906,0.000066213244,0.00014069001,0.00040789667,0.00008822507],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037788728,0.0003310992,0.00095962017,0.00017716696,0.00031194283,6.067462e-7,0.0012022095,0.000004544701,0.99118084,0.000099329656,0.00016383696,0.0051908903],"study_design_scores_gemma":[0.0014478895,0.00025226417,0.024815528,0.0016604228,0.00008530875,0.0000017410807,0.00016570234,0.0000454409,0.97101665,0.000158582,0.00025931883,0.000091154856],"about_ca_topic_score_codex":0.000057674624,"about_ca_topic_score_gemma":0.00003644754,"teacher_disagreement_score":0.023855908,"about_ca_system_score_codex":0.00006719308,"about_ca_system_score_gemma":0.00011035829,"threshold_uncertainty_score":0.3557111},"labels":[],"label_agreement":null},{"id":"W4408403244","doi":"10.1152/ajpcell.00124.2025","title":"Interleukin-10 resistance in type 2 diabetes is associated with defective STAT3 signaling in human blood leukocytes","year":2025,"lang":"en","type":"article","venue":"American Journal of Physiology-Cell Physiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Okanagan University College; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Killam Trusts","keywords":"SOCS3; Cytokine; CD14; Immunology; Endocrinology; Inflammation; Internal medicine; Signal transduction; Lipopolysaccharide; STAT3; Peripheral blood mononuclear cell; Biology; Medicine; Flow cytometry; Cell biology","score_opus":0.004395443505020093,"score_gpt":0.22293143704513993,"score_spread":0.21853599354011985,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408403244","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9972841,0.0017717446,0.0000035977234,0.0001399429,0.00019763305,0.00015533106,0.0000051890374,0.0000172839,0.00042518481],"genre_scores_gemma":[0.9987587,0.00009704492,0.00005621188,0.0003597742,0.00002593254,0.00001285122,0.000040410272,0.000020813808,0.000628258],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969027,0.001286501,0.000821947,0.00037385753,0.000046415655,0.0005685584],"domain_scores_gemma":[0.99762756,0.0007966554,0.000983799,0.00026632287,0.00030406448,0.000021630733],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004829441,0.00030295807,0.0010932152,0.00064411,0.00010879942,0.000008587316,0.00040149174,0.00020727789,0.0002017992],"category_scores_gemma":[0.00020385563,0.00025079044,0.00014521026,0.00087091624,0.0008317703,0.00015110019,0.00008537266,0.0008190981,0.00002519288],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0026944224,0.00037526412,0.0022474881,0.000026277581,0.000470725,0.000009324807,0.00096922327,0.00020975934,0.992196,0.00010297194,0.00051246607,0.00018604644],"study_design_scores_gemma":[0.0043210983,0.0033441316,0.14540872,0.00047757942,0.00011924982,0.0000050139356,0.0011321927,0.000004875147,0.8421608,0.002100255,0.0006084839,0.00031756074],"about_ca_topic_score_codex":0.000063312196,"about_ca_topic_score_gemma":0.000078350124,"teacher_disagreement_score":0.15003519,"about_ca_system_score_codex":0.00016579975,"about_ca_system_score_gemma":0.00025955663,"threshold_uncertainty_score":0.99999446},"labels":[],"label_agreement":null},{"id":"W4408550103","doi":"10.1111/pde.15826","title":"Reactive Infectious Mucocutaneous Eruption Associated With <i>Klebsiella pneumoniae</i>","year":2025,"lang":"en","type":"article","venue":"Pediatric Dermatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Medicine; Hard rime; Klebsiella pneumoniae; Mucocutaneous zone; Immunology; Urinary system; Dermatology; Pathology; Internal medicine; Disease; Biology","score_opus":0.0033048808839307793,"score_gpt":0.20631994679743182,"score_spread":0.20301506591350105,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408550103","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98037195,0.0017700267,0.000516474,0.00078276056,0.00087405683,0.00030899193,0.0000061023893,0.0002750952,0.015094543],"genre_scores_gemma":[0.99605227,0.00024051411,0.000008427816,0.00032612708,0.00002785815,0.000053106873,0.00014459078,0.000016211541,0.003130902],"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9983934,0.0004364643,0.00038121085,0.00031057818,0.0000401202,0.00043819725],"domain_scores_gemma":[0.9987149,0.0006058907,0.00023707429,0.00026328984,0.00016211205,0.00001671827],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00015426106,0.00022196645,0.0003814932,0.0004021729,0.00025806128,0.00001845026,0.00016066246,0.00047881564,0.00009954056],"category_scores_gemma":[0.00031819544,0.00019721466,0.00007628119,0.000572751,0.00012585333,0.00012566047,0.00006182184,0.0004027337,0.0005853509],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0032043539,0.0016865318,0.6238837,0.00029675936,0.0028733504,0.001209857,0.002410883,0.00017137636,0.27171317,0.013000927,0.06251473,0.017034357],"study_design_scores_gemma":[0.028069345,0.0024545004,0.24707557,0.00027702708,0.0044453274,0.030444555,0.001356687,0.00027277094,0.38486564,0.0069860998,0.28968948,0.004063003],"about_ca_topic_score_codex":0.00004548055,"about_ca_topic_score_gemma":0.000043822143,"teacher_disagreement_score":0.37680814,"about_ca_system_score_codex":0.00010185698,"about_ca_system_score_gemma":0.00020130585,"threshold_uncertainty_score":0.80421805},"labels":[],"label_agreement":null},{"id":"W4408564583","doi":"10.1016/j.isci.2025.112243","title":"Neonatal gut microbiota succession in mice mapped over time, site, injury and single immunoglobulin interleukin-1 related receptor genotype","year":2025,"lang":"en","type":"article","venue":"iScience","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Foundation for Science and Technology Development; National Institutes of Health; National Science Foundation","keywords":"Genotype; Ecological succession; Gut flora; Antibody; Biology; Receptor; Immunology; Genetics; Gene; Ecology","score_opus":0.0037299765768119123,"score_gpt":0.22532661185590958,"score_spread":0.22159663527909768,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408564583","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9923554,0.0049006566,0.000031881125,0.00041607293,0.000561323,0.0001973283,0.000010132633,0.0000471,0.0014801166],"genre_scores_gemma":[0.9842972,0.00015328485,0.00011869169,0.00015828584,0.0000055789674,0.0000055927444,0.00007652424,0.0000072401235,0.015177611],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99872434,0.00019450417,0.00037837747,0.0003588871,0.00003394493,0.0003099642],"domain_scores_gemma":[0.999518,0.00008517269,0.000112092224,0.00022302661,0.00004903773,0.000012707056],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00041507464,0.00015486695,0.00019845236,0.00030110407,0.00018266882,0.00004417122,0.00028130997,0.00025315105,0.00058822695],"category_scores_gemma":[0.00014238077,0.00014034171,0.000038173028,0.0005854016,0.00031488558,0.00037825297,0.0002595869,0.00027688066,0.0010547758],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00040366733,0.00004366623,0.0012019596,0.000010987705,0.0000130804765,0.0000024903752,0.0006084594,0.0000014434567,0.9749216,0.000113493435,0.0014256164,0.021253573],"study_design_scores_gemma":[0.0011554868,0.0001557147,0.07325561,0.00028776156,0.000012082563,0.000029437348,0.00009199846,0.000050596318,0.8434328,0.0000747463,0.08120788,0.00024587594],"about_ca_topic_score_codex":0.00016064914,"about_ca_topic_score_gemma":0.000017906674,"teacher_disagreement_score":0.13148876,"about_ca_system_score_codex":0.000102157435,"about_ca_system_score_gemma":0.00010147517,"threshold_uncertainty_score":0.999723},"labels":[],"label_agreement":null},{"id":"W4408622490","doi":"10.1007/s00018-025-05631-x","title":"Role of TLRs as signaling cascades to combat infectious diseases: a review","year":2025,"lang":"en","type":"review","venue":"Cellular and Molecular Life Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Signal transduction; Biology; Infectious disease (medical specialty); Neuroscience; Immunology; Virology; Computational biology; Cell biology; Medicine; Disease; Pathology","score_opus":0.010047861736729226,"score_gpt":0.28581292821394505,"score_spread":0.2757650664772158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408622490","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0005694969,0.9970254,0.00010509117,0.000056347577,0.00020580577,0.00085094746,0.000015375164,0.000028900173,0.0011426681],"genre_scores_gemma":[0.001068759,0.99797696,0.000015643287,0.0004190576,0.000012001643,0.0000750003,0.00008967394,0.000011275478,0.00033165305],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9980028,0.00059976603,0.0005898473,0.00043708214,0.00008709203,0.0002833721],"domain_scores_gemma":[0.9990943,0.00021261742,0.0002831404,0.00028291123,0.00007092193,0.00005612318],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005812748,0.00030047173,0.0012184582,0.00036112464,0.00022750237,0.00002600592,0.00038020677,0.00023636062,0.00008480077],"category_scores_gemma":[0.00067411555,0.00023226214,0.0003684851,0.0006623264,0.00032368719,0.0000664248,0.00019705373,0.00019572601,0.00010095728],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000018593142,0.00009151296,0.000007545371,0.051170234,0.0005128411,0.000019743386,0.00018074397,0.000005060314,0.05509193,0.0032755537,0.0011504632,0.8884758],"study_design_scores_gemma":[0.00012958389,0.00018679388,6.865377e-7,0.03512357,0.0010318172,0.00003630899,0.000065747496,4.3767545e-7,0.012300991,0.0001579332,0.95066786,0.00029825416],"about_ca_topic_score_codex":0.000041734216,"about_ca_topic_score_gemma":6.768181e-7,"teacher_disagreement_score":0.9495174,"about_ca_system_score_codex":0.000018443941,"about_ca_system_score_gemma":0.0007134786,"threshold_uncertainty_score":0.94713753},"labels":[],"label_agreement":null},{"id":"W4408742059","doi":"10.1101/2025.03.20.644388","title":"Biophysical characterization of Eag chaperones suggests the mechanism of effector transmembrane domain release","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McMaster University; University of Manitoba","funders":"","keywords":"Effector; Mechanism (biology); Domain (mathematical analysis); Transmembrane protein; Characterization (materials science); Transmembrane domain; Cell biology; Chemistry; Biophysics; Computational biology; Biology; Biochemistry; Nanotechnology; Materials science; Physics; Membrane; Receptor; Mathematics","score_opus":0.005837174479853321,"score_gpt":0.19795889544479936,"score_spread":0.19212172096494604,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408742059","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946617,0.0005760392,0.0018086181,0.0002985088,0.0011958067,0.00092680764,0.0004268519,0.00010017843,0.0000054886114],"genre_scores_gemma":[0.9991721,0.0003926846,0.00009632135,0.0000465291,0.00007530457,0.00013901584,0.0000096175245,0.00003645343,0.000032009197],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977101,0.0006574524,0.0007358926,0.0004713685,0.00010346887,0.00032172733],"domain_scores_gemma":[0.99781245,0.0002056804,0.00065613876,0.0009624149,0.00033721008,0.000026099062],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00062846683,0.00039507216,0.00073321484,0.00026436336,0.00013180025,0.000019537074,0.0005378215,0.0007218092,0.00006951545],"category_scores_gemma":[0.00012746143,0.0003242012,0.0002543251,0.00035546653,0.00026960485,0.00009690727,0.00020513026,0.0005673442,0.000047658537],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039480673,0.00016959547,0.00007216431,0.00076659955,0.0003184006,0.0000027719188,0.00006260969,0.000003931383,0.99136835,0.006817455,0.000014309242,0.000008981906],"study_design_scores_gemma":[0.0007413147,0.00011178,0.027006663,0.00059012364,0.00017548302,2.3219929e-8,0.0000035057087,0.000031773397,0.9699863,0.0000050531703,0.0010763274,0.00027163335],"about_ca_topic_score_codex":0.00004252121,"about_ca_topic_score_gemma":5.7254664e-7,"teacher_disagreement_score":0.026934499,"about_ca_system_score_codex":0.000056217476,"about_ca_system_score_gemma":0.00038323225,"threshold_uncertainty_score":0.999921},"labels":[],"label_agreement":null},{"id":"W4408806016","doi":"10.14740/wjon2532","title":"Tumor Necrosis Factor-Alpha and Its Association With Breast Cancer: A Systematic Review","year":2025,"lang":"en","type":"review","venue":"World Journal of Oncology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":12,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; Breast cancer; Tumor necrosis factor alpha; Oncology; Cancer; Internal medicine","score_opus":0.016007715055195822,"score_gpt":0.3144825664929265,"score_spread":0.29847485143773067,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4408806016","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000020745116,0.99687153,0.000002723891,0.00079364283,0.000795548,0.0011561252,0.00006532195,0.000012964066,0.0002814175],"genre_scores_gemma":[0.000039137583,0.9894183,0.0000101624555,0.00033195503,0.00006470741,0.00011723253,0.00002223739,0.000021681373,0.009974559],"study_design_codex":"systematic_review","study_design_gemma":"not_applicable","domain_scores_codex":[0.99580204,0.0018398555,0.001746821,0.00020392012,0.00009203714,0.00031529367],"domain_scores_gemma":[0.9934048,0.0012978762,0.004570995,0.00018811578,0.00050411606,0.00003406248],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013175234,0.00037604023,0.00452424,0.0005949582,0.00012280724,0.000022911368,0.00031836843,0.00036653312,0.00031861776],"category_scores_gemma":[0.00049679866,0.00023612431,0.00042806836,0.0004926827,0.00004306298,0.00016094687,0.00006783628,0.00097130967,0.00006607491],"study_design_candidate":"systematic_review","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013402416,0.00008167066,0.000014550581,0.781964,0.0029155782,0.000055949655,0.00007549391,8.153836e-8,0.0000371599,0.00007726799,0.0057591973,0.20888504],"study_design_scores_gemma":[0.00047854983,0.00020239525,0.000018547598,0.4443902,0.0057832245,0.0022522404,0.000005786737,4.7154806e-8,0.000013691594,0.0000021287294,0.54669833,0.000154838],"about_ca_topic_score_codex":0.000013118329,"about_ca_topic_score_gemma":0.00004207829,"teacher_disagreement_score":0.54093915,"about_ca_system_score_codex":0.0014780501,"about_ca_system_score_gemma":0.0027309249,"threshold_uncertainty_score":0.962887},"labels":[],"label_agreement":null},{"id":"W4409723337","doi":"10.1093/jleuko/qiaf050","title":"No-lyse no-wash flow cytometry method for ex vivo study of human neutrophils","year":2025,"lang":"en","type":"article","venue":"Journal of Leukocyte Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Children's Hospital; University of British Columbia","funders":"European Commission; BC Children's Hospital","keywords":"Biology; Flow cytometry; Ex vivo; Whole blood; Immune system; Immunology; Annexin A5; Andrology; Population; Cytometry; Annexin; In vitro; Biochemistry; Medicine","score_opus":0.01778108028524154,"score_gpt":0.34191835253963915,"score_spread":0.3241372722543976,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4409723337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98654896,0.0021851023,0.0070039816,0.00016926443,0.002514534,0.00048280472,0.000012236748,0.000017074131,0.001066016],"genre_scores_gemma":[0.989793,0.00017462848,0.003198041,0.00021515673,0.00026594527,0.000019052859,0.000027498842,0.00002038495,0.0062863],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997332,0.00090751704,0.001188807,0.0002108623,0.00003887041,0.00032199343],"domain_scores_gemma":[0.9972712,0.0007303641,0.0008694804,0.0003092056,0.000798451,0.000021338585],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014886872,0.0002106814,0.000861976,0.0007425929,0.00016123141,0.000010137016,0.0004328073,0.00039669184,0.00022213058],"category_scores_gemma":[0.0005792736,0.00016441707,0.00031313841,0.0002487131,0.000120385834,0.00011572324,0.000103499784,0.00040312196,0.000060935952],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0030922408,0.00043961446,0.00093546876,0.000047653855,0.001013245,0.0000057392945,0.0002592309,0.000019586416,0.98471034,0.00038484248,0.0044773347,0.0046147327],"study_design_scores_gemma":[0.012154256,0.011339877,0.00882639,0.000116344374,0.00051059964,0.00014247397,0.0006958781,0.00006431269,0.8315544,0.000593019,0.13370965,0.00029276096],"about_ca_topic_score_codex":0.000048220903,"about_ca_topic_score_gemma":0.00000793693,"teacher_disagreement_score":0.15315588,"about_ca_system_score_codex":0.00010277928,"about_ca_system_score_gemma":0.00019353341,"threshold_uncertainty_score":0.67047334},"labels":[],"label_agreement":null},{"id":"W4410472330","doi":"10.1016/j.actbio.2025.05.034","title":"A Chitosan-based Hydrogel to Modulate Immune Cells and Promote Periodontitis Healing in the High-Fat Diet-induced Periodontitis Rat Model","year":2025,"lang":"en","type":"article","venue":"Acta Biomaterialia","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":14,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canada Research Chairs; University of Toronto","funders":"Faculty of Dentistry, University of Toronto; University of Toronto; Financiadora de Estudos e Projetos; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Universidade Estadual Paulista; American Association of Endodontists Foundation","keywords":"Periodontitis; Inflammation; Immune system; Immunology; Medicine; Cytokine; Cancer research; Internal medicine","score_opus":0.008396623528237375,"score_gpt":0.23132659656653026,"score_spread":0.2229299730382929,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410472330","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935158,0.00037725223,0.00012492995,0.002969562,0.0019948531,0.0008113527,0.000044123153,0.00007416778,0.00008794037],"genre_scores_gemma":[0.99856323,0.00004267061,0.00019905237,0.0004204919,0.000031075775,0.0001247009,0.00016530322,0.000023176195,0.00043029193],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99821144,0.00032030666,0.0005346469,0.00040639963,0.000056410987,0.00047080687],"domain_scores_gemma":[0.9992834,0.000042021435,0.00011515192,0.00050594565,0.000031826683,0.00002170401],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00040585225,0.00029170985,0.00043277643,0.00028489434,0.00035458442,0.00017653673,0.0003664924,0.00029472145,0.00007172412],"category_scores_gemma":[0.000044800992,0.00023299464,0.00008079013,0.00029285246,0.00009814458,0.0001670279,0.0001359245,0.00013454353,0.00006509297],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008145075,0.00006234801,0.000042065854,0.000052211966,0.000050718892,0.00001011556,0.0013896155,0.000042523458,0.9960193,0.00024753262,0.00044830944,0.0008207477],"study_design_scores_gemma":[0.0015705432,0.0002535081,0.0023028476,0.0001934633,0.00003771405,0.000010267403,0.00012505817,0.00083776633,0.9920498,0.000077210505,0.0022835368,0.00025828302],"about_ca_topic_score_codex":0.0012960742,"about_ca_topic_score_gemma":0.00008785448,"teacher_disagreement_score":0.0050474186,"about_ca_system_score_codex":0.0000448274,"about_ca_system_score_gemma":0.00009182688,"threshold_uncertainty_score":0.95012456},"labels":[],"label_agreement":null},{"id":"W4410513006","doi":"10.3899/jrheum.2025-0390.pv113","title":"TRANSCRIPTOMIC ANALYSIS REVEALS A SYNERGY OF HYDROXYCHLOROQUINE AND GLUCOCORTICOIDS IN MODULATING B CELL-RELATED IMMUNE PROCESSES","year":2025,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Hydroxychloroquine; Medicine; Immune system; Transcriptome; Immunopathology; Immunology; Computational biology; Internal medicine; Genetics; Gene expression; Gene; Coronavirus disease 2019 (COVID-19); Biology; Disease","score_opus":0.0036255180206411076,"score_gpt":0.21500271428843104,"score_spread":0.21137719626778995,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410513006","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9756951,0.022838313,0.00058079895,0.00048059202,0.00015922477,0.000098226796,0.0000010011964,0.0000062671934,0.00014051884],"genre_scores_gemma":[0.9965763,0.0031025598,0.000029136156,0.000016220807,6.2993536e-7,0.0000023744758,0.000004489467,0.0000057635275,0.0002624985],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99784577,0.0005623608,0.0012732809,0.00008958002,0.00003351217,0.00019547054],"domain_scores_gemma":[0.99830276,0.00059860165,0.00076039904,0.00017515458,0.00015465016,0.000008437094],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00109955,0.00012367584,0.00073876366,0.0006993809,0.00007518799,0.000004475065,0.00023146559,0.00018543217,0.00005473166],"category_scores_gemma":[0.0003129629,0.00008539879,0.00011442631,0.00086653314,0.00021752888,0.00010321171,0.000038400194,0.00030530838,0.00000260905],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013400891,0.00011536489,0.07498027,0.0002377451,0.0016295634,0.0000030926817,0.0031321582,0.0012805699,0.9148404,0.0007645505,0.000036920243,0.0016392582],"study_design_scores_gemma":[0.012980982,0.0010362057,0.21815059,0.0015664932,0.0037682618,0.0029617893,0.0046485243,0.0016209153,0.74707395,0.0053075636,0.0003975172,0.0004871898],"about_ca_topic_score_codex":0.0003331382,"about_ca_topic_score_gemma":0.000083330764,"teacher_disagreement_score":0.16776645,"about_ca_system_score_codex":0.000022461443,"about_ca_system_score_gemma":0.00012794237,"threshold_uncertainty_score":0.34824616},"labels":[],"label_agreement":null},{"id":"W4410715674","doi":"10.3899/jrheum.2025-0390.pv010","title":"ESTROGEN RECEPTOR ALPHA LOCALIZATION AFFECTS CYTOKINE GENE EXPRESSION AFTER TLR7 AGONISM IN LUPUS-PRONE MALES","year":2025,"lang":"en","type":"article","venue":"The Journal of Rheumatology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Medicine; TLR7; Estrogen receptor alpha; Agonism; Systemic lupus erythematosus; Alpha (finance); Estrogen; Estrogen receptor; Endocrinology; Internal medicine; Receptor; Gene expression; Cytokine; Gene; Toll-like receptor; Genetics; Biology; Innate immune system","score_opus":0.005447945923049804,"score_gpt":0.22670457278057576,"score_spread":0.22125662685752595,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4410715674","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9814459,0.011806344,0.0041243625,0.001011298,0.00134181,0.000177199,0.000002359443,0.000013980483,0.00007672857],"genre_scores_gemma":[0.9965516,0.0025552872,0.00016482471,0.00011847379,0.000006995741,0.000010333902,0.000022615232,0.000011056532,0.0005588646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99802583,0.0009721535,0.00058652594,0.000108719985,0.000044793564,0.00026197944],"domain_scores_gemma":[0.9989523,0.00031873406,0.00039269618,0.00022408816,0.00009899099,0.000013147426],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083038234,0.00015265643,0.00039495146,0.00032024633,0.00011501294,0.00000924335,0.000274931,0.00027788657,0.00020805605],"category_scores_gemma":[0.0001619285,0.000102014696,0.000083355466,0.00019400934,0.00017240531,0.00015161521,0.00009072255,0.00035279852,0.00010388561],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003916165,0.00009788162,0.06783337,0.000056716573,0.00015171598,0.000009234761,0.0009347681,0.00015747447,0.91999483,0.00069920917,0.003365308,0.0027833316],"study_design_scores_gemma":[0.0034733766,0.00033236665,0.010830248,0.0007453465,0.000085810505,0.0030194279,0.00043176877,0.000043788546,0.95370364,0.0005442169,0.026603635,0.00018638579],"about_ca_topic_score_codex":0.000037401565,"about_ca_topic_score_gemma":0.000017999826,"teacher_disagreement_score":0.05700312,"about_ca_system_score_codex":0.00006402844,"about_ca_system_score_gemma":0.00012225627,"threshold_uncertainty_score":0.41600385},"labels":[],"label_agreement":null},{"id":"W4411550156","doi":"10.3389/fcimb.2025.1618339","title":"Specific inflammatory stimuli that engage innate immune sensors induce novel CD103 expression profiles in macrophages","year":2025,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; National Institute of Dental and Craniofacial Research; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Cell biology; Innate immune system; Biology; Downregulation and upregulation; Macrophage; Immune system; Inflammation; MAPK/ERK pathway; Immunology; Signal transduction; In vitro","score_opus":0.010269227093114968,"score_gpt":0.2205145391984971,"score_spread":0.2102453121053821,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411550156","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9793045,0.012311203,0.0036894435,0.00012651701,0.0032352726,0.00072315027,0.000014705076,0.00007186187,0.0005233599],"genre_scores_gemma":[0.9950925,0.0022997654,0.00034970933,0.000065490014,0.000028692737,0.00008388224,0.000296754,0.00002197174,0.0017612407],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975055,0.0007805064,0.0006599093,0.0005307523,0.000021887736,0.0005014839],"domain_scores_gemma":[0.99929214,0.00012087117,0.00020285472,0.0003145354,0.000051952633,0.000017678878],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0008103832,0.00033288583,0.0005406894,0.0011042736,0.00023499249,0.000029211235,0.00016431752,0.00078882795,0.00010930207],"category_scores_gemma":[0.00008511479,0.0003215582,0.00009776684,0.00039672654,0.00036902764,0.00024278535,0.00016772038,0.00090767094,0.00005284548],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042563476,0.0001408303,0.04880075,0.00007034865,0.00005744791,0.00001187918,0.0005135665,0.000060507842,0.94446063,0.00012241943,0.0020806405,0.0032553251],"study_design_scores_gemma":[0.002894675,0.00007478758,0.034104805,0.00018131512,0.000013541351,0.000038314207,0.00031666868,0.000025227166,0.89043415,0.00009272626,0.0715421,0.00028169982],"about_ca_topic_score_codex":0.00009952192,"about_ca_topic_score_gemma":0.0000095053265,"teacher_disagreement_score":0.06946146,"about_ca_system_score_codex":0.0001604269,"about_ca_system_score_gemma":0.00007446538,"threshold_uncertainty_score":0.99992365},"labels":[],"label_agreement":null},{"id":"W4411683360","doi":"10.1101/2025.06.24.661302","title":"Rapid genetic diversification of <i>Bacteroides thetaiotaomicron</i> in mono-associated mice revealed through deep population-level sequencing","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Russian Science Foundation; Austrian Science Fund; Universität Wien; Österreichischen Akademie der Wissenschaften; Deutsche Forschungsgemeinschaft","keywords":"Bacteroides thetaiotaomicron; Bacteroides; Diversification (marketing strategy); Biology; Population; Microbiome; Genetics; Bacteria; Environmental health; Medicine; Business","score_opus":0.020589841225111916,"score_gpt":0.21800609698103426,"score_spread":0.19741625575592234,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4411683360","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99121034,0.0059413984,0.00067918753,0.00010382708,0.00085619785,0.0008455175,0.00022084458,0.00012546491,0.000017196475],"genre_scores_gemma":[0.99692833,0.0013243912,0.0014480851,0.00008155639,0.00003195969,0.000091415575,0.000016890575,0.000039978277,0.000037371334],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9969412,0.00073885545,0.0010812747,0.00068872806,0.00008899613,0.000460951],"domain_scores_gemma":[0.99748415,0.00020838025,0.0010067931,0.0008593484,0.0004185642,0.000022773285],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0007163204,0.00044695477,0.0007572463,0.0004171045,0.000170251,0.00004113601,0.0005431598,0.0010046056,0.00005578917],"category_scores_gemma":[0.00043668074,0.00050603354,0.00018885788,0.00050329237,0.000118505675,0.00021268304,0.0003280414,0.0007070999,0.000049358052],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00015756242,0.000101714926,0.020412665,0.00025468803,0.00030743465,0.0000042724314,0.00014217485,0.00020331374,0.97818905,0.00013755079,0.000067895446,0.00002169982],"study_design_scores_gemma":[0.0008880662,0.000029899542,0.45017546,0.0006139476,0.00013402819,2.4572323e-8,0.000018284923,0.00008870585,0.5473697,0.000007742645,0.0003071697,0.0003669062],"about_ca_topic_score_codex":0.0011544012,"about_ca_topic_score_gemma":0.00003387093,"teacher_disagreement_score":0.43081927,"about_ca_system_score_codex":0.00072383595,"about_ca_system_score_gemma":0.00050401443,"threshold_uncertainty_score":0.9997391},"labels":[],"label_agreement":null},{"id":"W4412190682","doi":"10.5376/amb.2024.14.0037","title":"The Role of TLR Genes in Canid Immunity: Insights from Wolves, Coyotes, and Dogs","year":2024,"lang":"en","type":"article","venue":"Animal Molecular Breeding","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Immunity; Biology; Gene; Zoology; Immunology; Genetics; Immune system","score_opus":0.005586675249019175,"score_gpt":0.20959783714434568,"score_spread":0.2040111618953265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412190682","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8223618,0.17661093,0.000020796931,0.00013757145,0.00012869395,0.0000840113,0.0000037049538,0.000023506396,0.00062893465],"genre_scores_gemma":[0.99872416,0.0010990073,0.00002605262,0.000023615154,0.000016396936,0.00000825767,0.000030349256,0.000013330856,0.000058844813],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992605,0.0001373982,0.00023774414,0.000159177,0.000033691904,0.00017152041],"domain_scores_gemma":[0.99957,0.00020675902,0.000045158453,0.00013985978,0.00002902457,0.000009166429],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017013862,0.00010992845,0.00014925626,0.000107024,0.00012688093,0.000043357628,0.0001363349,0.00013339953,0.000017545632],"category_scores_gemma":[0.000054442546,0.00008420558,0.000046420453,0.0001496932,0.00012306718,0.00010375335,0.00011071607,0.00022400425,0.000024685734],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014089554,0.0000087147455,0.0005661261,0.000008399147,0.00009502019,0.000014992325,0.0007322335,8.4505643e-7,0.9671408,0.010358018,0.000024605879,0.02090937],"study_design_scores_gemma":[0.00027415698,0.00015922771,0.0105253095,0.0001312386,0.000031317944,0.000025488707,0.0009356233,0.00013153015,0.9558924,0.0020953547,0.029678643,0.00011972273],"about_ca_topic_score_codex":0.0022668024,"about_ca_topic_score_gemma":0.0001428904,"teacher_disagreement_score":0.1763623,"about_ca_system_score_codex":0.000022448416,"about_ca_system_score_gemma":0.00004764494,"threshold_uncertainty_score":0.3433804},"labels":[],"label_agreement":null},{"id":"W4412701577","doi":"10.1097/cce.0000000000001292","title":"Comparative Evaluation of Lipopolysaccharide Administration Methods to Induce Acute Lung Injury in Murine Models: Efficacy, Consistency, and Technical Considerations","year":2025,"lang":"en","type":"article","venue":"Critical Care Explorations","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Children's Hospital of Eastern Ontario; University of Toronto; McGill University Health Centre; St. Michael's Hospital; Ottawa Hospital; University of Ottawa","funders":"","keywords":"Medicine; Bronchoalveolar lavage; Lipopolysaccharide; Lung; Context (archaeology); Anesthesia; Evans Blue; Pathology; Internal medicine","score_opus":0.09186971084916902,"score_gpt":0.4428867385121059,"score_spread":0.3510170276629369,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412701577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.91385317,0.0035939952,0.06767297,0.007685212,0.00059722736,0.0019825792,0.00010661064,0.000105425475,0.0044028396],"genre_scores_gemma":[0.99269325,0.000021124779,0.0064866324,0.00017626521,0.000009496645,0.00039744913,0.00018214027,0.0000070229717,0.000026627395],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9977072,0.0010302797,0.00066134916,0.00031467303,0.00008902383,0.00019747435],"domain_scores_gemma":[0.9975769,0.0011048003,0.0000639954,0.0002702224,0.0009518703,0.000032222106],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00083448994,0.00016151744,0.0003682134,0.00041636644,0.00025429754,0.00003975309,0.000083747436,0.00023042699,0.00008012122],"category_scores_gemma":[0.0021478315,0.00016910724,0.000056197194,0.00033690612,0.0003171293,0.00039424645,0.000086844084,0.0002774419,0.000012225777],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002677799,0.00020486269,0.000064819214,0.00004172531,0.00008525401,0.0000015039087,0.00353147,0.0002556815,0.7279714,0.26326358,0.0008167054,0.0034952026],"study_design_scores_gemma":[0.001403139,0.00043639465,0.00373077,0.00020665563,0.0005491932,0.000029236784,0.0060671642,0.0020350192,0.9689479,0.016115827,0.00019096363,0.00028776182],"about_ca_topic_score_codex":0.00002284313,"about_ca_topic_score_gemma":0.00014436986,"teacher_disagreement_score":0.24714777,"about_ca_system_score_codex":0.00013060372,"about_ca_system_score_gemma":0.00068280083,"threshold_uncertainty_score":0.68959934},"labels":[],"label_agreement":null},{"id":"W4412725450","doi":"10.1038/s44318-025-00515-z","title":"Macrophages form dendrite-like pseudopods to enhance bacterial ingestion","year":2025,"lang":"en","type":"article","venue":"The EMBO Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":7,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China; Science and Technology Commission of Shanghai Municipality; Natural Science Foundation of Shanghai","keywords":"Biology; Pseudopodia; Ingestion; Dendrite (mathematics); Microbiology; Cell biology; Biophysics; Biochemistry; Actin","score_opus":0.005912610383858254,"score_gpt":0.27239391826377124,"score_spread":0.266481307879913,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412725450","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9878655,0.0011945362,0.0018264,0.0037722813,0.0037520737,0.00013410111,0.0000018958573,0.000028358618,0.0014248339],"genre_scores_gemma":[0.9861159,0.00019951594,0.000101696765,0.00053655787,0.00017416225,0.000009571036,0.000010894568,0.0000074424916,0.012844309],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905336,0.0002728858,0.0002839937,0.00010231273,0.000033234814,0.00025423148],"domain_scores_gemma":[0.9994946,0.00011374337,0.000104506355,0.00018921045,0.00008326227,0.000014673752],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00066435605,0.000108467175,0.00014303286,0.00013399609,0.0005109364,0.000069103226,0.000281225,0.00009745656,0.00062449684],"category_scores_gemma":[0.00013656841,0.000073373754,0.00007240249,0.00015156271,0.000058943442,0.00014427022,0.000081027516,0.00038410068,0.00060635235],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010173877,0.00002387533,0.000051967574,0.0000057971847,0.000097997836,0.0000054926577,0.00073256576,0.000009551173,0.92747587,0.0005680584,0.01976116,0.050250273],"study_design_scores_gemma":[0.00050159136,0.00013698133,0.004921982,0.000101486825,0.000045225923,0.0004308072,0.00020001142,0.00000385172,0.8018733,0.0010184118,0.19065566,0.00011064591],"about_ca_topic_score_codex":0.000011405137,"about_ca_topic_score_gemma":0.000009706288,"teacher_disagreement_score":0.1708945,"about_ca_system_score_codex":0.00006870195,"about_ca_system_score_gemma":0.00009567738,"threshold_uncertainty_score":0.77936345},"labels":[],"label_agreement":null},{"id":"W4412980109","doi":"10.1016/j.jaci.2025.07.021","title":"Autosomal-dominant Roquin-1 immunodeficiency and hyperinflammation","year":2025,"lang":"en","type":"article","venue":"Journal of Allergy and Clinical Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"SickKids Foundation; AllerGen; University of Toronto; Hospital for Sick Children","funders":"GlaxoSmithKline; Immunodeficiency Canada; AstraZeneca; Jeffrey Modell Foundation","keywords":"Inflammation; Human immunodeficiency virus (HIV); Immunodeficiency; Immunology; Medicine; Immune system","score_opus":0.011101734779652752,"score_gpt":0.28603722348821403,"score_spread":0.27493548870856127,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4412980109","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9641924,0.030451203,0.00050386187,0.0019481194,0.0016607675,0.000088102475,6.881591e-7,0.00001327665,0.001141581],"genre_scores_gemma":[0.9787714,0.018688606,0.00013018306,0.0001702923,0.00003678057,0.000002718457,0.0000049966047,0.0000075036764,0.0021875252],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9978292,0.00046729963,0.0012459718,0.00018152402,0.00003407473,0.00024195755],"domain_scores_gemma":[0.9984572,0.0005950633,0.0005359239,0.00019406083,0.00019941662,0.000018336395],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010477466,0.00015923809,0.0005186185,0.00023774333,0.00020813926,0.000023486282,0.00020025852,0.0004534786,0.0001032216],"category_scores_gemma":[0.0006015569,0.00012501777,0.00015175079,0.00011740594,0.0005535607,0.00022184665,0.00014500844,0.0005927193,0.000032812357],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0050161285,0.0004415804,0.003871635,0.00002745158,0.003813026,0.000038668157,0.00050052494,0.000006571474,0.7137973,0.02950732,0.0009784263,0.24200137],"study_design_scores_gemma":[0.011407638,0.0032659227,0.5908276,0.00034700183,0.00034777736,0.0015503298,0.0014271636,0.00006282027,0.08239083,0.0040039397,0.30392224,0.00044677415],"about_ca_topic_score_codex":0.0000151297245,"about_ca_topic_score_gemma":0.00000820038,"teacher_disagreement_score":0.6314065,"about_ca_system_score_codex":0.000022591228,"about_ca_system_score_gemma":0.00014664017,"threshold_uncertainty_score":0.5098077},"labels":[],"label_agreement":null},{"id":"W4413143658","doi":"10.1016/j.abb.2025.110592","title":"Distinct interactions of proanthocyanidins of various degrees of polymerization with TLR4 receptor on the integrity of differentiating Caco-2 cell monolayers through tight junction protein expression","year":2025,"lang":"en","type":"article","venue":"Archives of Biochemistry and Biophysics","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Caco-2; Tight junction; Proanthocyanidin; Monolayer; Chemistry; Cell biology; Polymerization; Receptor; Biophysics; Cell; Biology; Biochemistry; Polymer; Organic chemistry","score_opus":0.007198201024661158,"score_gpt":0.21200625805148263,"score_spread":0.20480805702682148,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413143658","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99607134,0.00016025412,0.0027096183,0.000042450927,0.000039090486,0.00018938562,0.000038617276,0.0000048319494,0.00074443244],"genre_scores_gemma":[0.99924535,0.000049338694,0.00039836258,0.000001329545,0.000005380643,0.000009377576,0.00008802253,0.0000039656484,0.00019888664],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99935347,0.00009883618,0.00032269364,0.00012003121,0.000035068595,0.00006987301],"domain_scores_gemma":[0.9990404,0.00019599624,0.00052295305,0.00018056427,0.0000557959,0.0000042908855],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000046430527,0.000103209335,0.00021390856,0.0000399738,0.000062638486,0.0000018347689,0.000097584794,0.000065810375,0.000008458203],"category_scores_gemma":[0.000049515376,0.000066308865,0.00006303742,0.000115640454,0.00034283294,0.000047446836,0.000050636027,0.00014172525,1.2626442e-7],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012376868,0.00029211797,0.00063031673,0.00049956643,0.00009414563,2.8568202e-8,0.000935959,0.0000047344297,0.9933,0.00052080967,0.0000062141353,0.0024783942],"study_design_scores_gemma":[0.00036737233,0.0002605777,0.002709774,0.0008545087,0.00004684656,4.5362907e-7,0.0008693378,0.000051136933,0.99465156,0.00012403814,0.000009504199,0.00005487532],"about_ca_topic_score_codex":0.000110418514,"about_ca_topic_score_gemma":0.0000015574227,"teacher_disagreement_score":0.0031740172,"about_ca_system_score_codex":0.0000046407345,"about_ca_system_score_gemma":0.000054923014,"threshold_uncertainty_score":0.27039972},"labels":[],"label_agreement":null},{"id":"W4413312133","doi":"10.1073/pnas.2512154122","title":"ER-resident CCDC134 safeguards TLR4 maturation by maintaining gp96 stability","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Cancer Research; Institute of Infection and Immunity","funders":"National Key Research and Development Program of China; National Postdoctoral Program for Innovative Talents; Chinese Academy of Sciences, Shanghai Branch; China Postdoctoral Science Foundation; Chinese Academy of Sciences; National Natural Science Foundation of China; Innovative Research Team of High-level Local University in Shanghai","keywords":"Endoplasmic reticulum; TLR4; Cell biology; Secretion; Golgi apparatus; Toll-like receptor; Receptor; Unfolded protein response; Chaperone (clinical); Glycosylation; Biology; Signal transduction; Innate immune system; Biochemistry; Medicine","score_opus":0.02079753846588244,"score_gpt":0.2923841423186596,"score_spread":0.27158660385277716,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413312133","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98296356,0.00067533785,0.000009007133,0.0068149776,0.000072083145,0.00020218451,0.0000110888805,0.000016101925,0.00923563],"genre_scores_gemma":[0.99853647,0.00003284051,0.00009457871,0.00020998743,0.000012496947,0.000010393328,0.0000013663388,0.0000018173776,0.0011000511],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9990185,0.000030320958,0.00040089502,0.00019017444,0.00020922486,0.00015089444],"domain_scores_gemma":[0.9991911,0.00018432006,0.00034179035,0.000010738015,0.00026623128,0.000005808869],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0019941113,0.00008430924,0.00014552932,0.00015140706,0.00031361153,0.000018951607,0.000498873,0.000144413,0.00007837913],"category_scores_gemma":[0.00082794373,0.000058593087,0.00006834744,0.000496125,0.0007103737,0.0003901954,0.00012577546,0.00019222946,0.000006162679],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010701448,0.000022093667,0.0015395883,0.000029129995,0.000025019153,7.9590223e-10,0.00023911515,0.0000082817005,0.9438814,0.04803438,0.005445473,0.0006685073],"study_design_scores_gemma":[0.00022425098,0.000032173084,0.04616067,0.0000778066,0.000012201476,0.0000024994165,0.0006169987,0.000051232168,0.93203294,0.017925106,0.0028094286,0.000054709217],"about_ca_topic_score_codex":0.000015136046,"about_ca_topic_score_gemma":1.1669414e-7,"teacher_disagreement_score":0.044621084,"about_ca_system_score_codex":0.00006727554,"about_ca_system_score_gemma":0.00007138108,"threshold_uncertainty_score":0.26174015},"labels":[],"label_agreement":null},{"id":"W4413741014","doi":"10.3390/genes16091014","title":"Beyond TLR4 and Its Alternative Lipopolysaccharide (LPS) Sensing Pathways in Zebrafish","year":2025,"lang":"en","type":"review","venue":"Genes","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Zebrafish; TLR4; Lipopolysaccharide; Computational biology; Biology; Cell biology; Signal transduction; Immunology; Gene; Genetics","score_opus":0.02722533363925418,"score_gpt":0.2824289131119814,"score_spread":0.2552035794727272,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413741014","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0021902625,0.9953573,0.000011395791,0.000026178075,0.0010073571,0.0005054094,0.00003981282,0.000039524304,0.0008227672],"genre_scores_gemma":[0.0002490529,0.9970013,0.000019450155,0.000049913288,0.00007200778,0.000025287267,0.00021709721,0.000022161948,0.0023437473],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99819106,0.0005248418,0.0005504935,0.00038869886,0.000029262143,0.0003156419],"domain_scores_gemma":[0.9990781,0.00037593278,0.00024747106,0.0002337529,0.00005217795,0.0000125925935],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00032779927,0.00033951085,0.0010665545,0.00045492753,0.000115941264,0.000027519045,0.00017902705,0.0005333969,0.00005923327],"category_scores_gemma":[0.00015050122,0.00029533298,0.00016971411,0.00016802354,0.000054860095,0.00009901128,0.00018657143,0.00037796955,0.0002264468],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000020984073,0.000012942273,9.912019e-7,0.0025796478,0.00018556736,0.000022487864,0.00021506332,3.5563647e-7,0.0057445117,0.00093381526,0.00018238243,0.9901013],"study_design_scores_gemma":[0.0004027177,0.000041273972,0.0000057272,0.0072271167,0.00027430264,0.00014104744,0.00006752896,0.0000033940598,0.02736906,0.0002633323,0.963811,0.0003935129],"about_ca_topic_score_codex":0.000057891513,"about_ca_topic_score_gemma":0.000032429645,"teacher_disagreement_score":0.9897077,"about_ca_system_score_codex":0.00005999318,"about_ca_system_score_gemma":0.0002443448,"threshold_uncertainty_score":0.9999499},"labels":[],"label_agreement":null},{"id":"W4413786028","doi":"10.1097/cce.0000000000001308","title":"Organ Failure, Endotoxin Activity, and Mortality in Septic Shock","year":2025,"lang":"en","type":"article","venue":"Critical Care Explorations","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Iridian Spectral Technologies (Canada)","funders":"","keywords":"Medicine; Septic shock; SOFA score; Sepsis; Organ dysfunction; Shock (circulatory); Observational study; Internal medicine; Multiple organ dysfunction syndrome; Mortality rate","score_opus":0.020889125608304086,"score_gpt":0.3139766851599008,"score_spread":0.2930875595515967,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413786028","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99111056,0.0011897975,0.0017275616,0.0024312243,0.0002770643,0.00021213219,0.000013119943,0.000058472204,0.0029800697],"genre_scores_gemma":[0.9993545,0.000020990026,0.00005232897,0.000113039394,0.000011523841,0.00008085013,0.00007277082,0.000005673588,0.00028833255],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992007,0.00021715388,0.00018079249,0.00018933749,0.000022790133,0.00018925148],"domain_scores_gemma":[0.9993822,0.00030401873,0.000013444522,0.00019054374,0.00009592536,0.000013879788],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001028658,0.0000977281,0.00015351277,0.0001491346,0.00017469206,0.00003437737,0.00006962458,0.00015298468,0.00014377586],"category_scores_gemma":[0.00058254565,0.00009881644,0.000033000193,0.00020970177,0.00018729153,0.00027441638,0.000068299334,0.0002191249,0.00010576888],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007007393,0.00012641904,0.008449929,0.00012987244,0.00004630999,0.000010377181,0.0021637322,0.000004412701,0.8739744,0.109991096,0.00093777874,0.0040955977],"study_design_scores_gemma":[0.0014699763,0.00015118797,0.120362096,0.00013186007,0.00011584097,0.000016782731,0.009655597,0.00003937875,0.85004556,0.0072666868,0.010394852,0.00035017627],"about_ca_topic_score_codex":0.000042793254,"about_ca_topic_score_gemma":0.00044907752,"teacher_disagreement_score":0.11191217,"about_ca_system_score_codex":0.00004993323,"about_ca_system_score_gemma":0.00009881843,"threshold_uncertainty_score":0.40296173},"labels":[],"label_agreement":null},{"id":"W4413889888","doi":"10.1177/20499361251368006","title":"Circulating TNF-α levels in rheumatoid arthritis: a systematic review and meta-analysis and comparison to TNF-α levels in sepsis","year":2025,"lang":"en","type":"review","venue":"Therapeutic Advances in Infectious Disease","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Medicine; Rheumatoid arthritis; Meta-analysis; Cochrane Library; Sepsis; Internal medicine; Tumor necrosis factor alpha; TNF inhibitor; Systematic review; MEDLINE; Immunology; Adalimumab; Gastroenterology","score_opus":0.04906915183568767,"score_gpt":0.3612969839501415,"score_spread":0.3122278321144538,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413889888","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00038672844,0.99507177,0.00054349954,0.000050842693,0.000088903456,0.0036704976,0.00008620696,0.000047328176,0.000054217093],"genre_scores_gemma":[0.03663501,0.9609781,0.000017181692,0.00031557996,0.000003383239,0.0018483698,0.00007501068,0.00003012881,0.000097254786],"study_design_codex":"systematic_review","study_design_gemma":"systematic_review","domain_scores_codex":[0.9937391,0.0027442428,0.002221846,0.00073477376,0.00008700019,0.00047301888],"domain_scores_gemma":[0.9971558,0.0013670728,0.0007401953,0.0006183773,0.000060761806,0.000057822464],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0013617678,0.0006638306,0.007079278,0.0015200659,0.00011930143,0.000050124974,0.00023892318,0.00029704085,0.00013185511],"category_scores_gemma":[0.0006029884,0.0005474376,0.0007171567,0.0019424293,0.00012005655,0.00028705408,0.00014567743,0.00057148316,0.000034522363],"study_design_candidate":"systematic_review","study_design_consensus":"systematic_review","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048213937,0.00027748776,0.0005366077,0.6661225,0.028977903,0.000045531226,0.0006981569,0.00021104257,0.00000424167,0.00029835931,0.0000058881624,0.30277407],"study_design_scores_gemma":[0.0031357887,0.00022841331,0.001727805,0.46672213,0.4667014,0.000212935,0.00041817717,0.000060057984,0.000015840522,0.0015029026,0.056162536,0.0031120228],"about_ca_topic_score_codex":0.00007922756,"about_ca_topic_score_gemma":0.00052690756,"teacher_disagreement_score":0.4377235,"about_ca_system_score_codex":0.00021073574,"about_ca_system_score_gemma":0.0002058792,"threshold_uncertainty_score":0.9996977},"labels":[],"label_agreement":null},{"id":"W4413980866","doi":"10.1073/pnas.2502640122","title":"12/15-lipoxygenase orchestrates murine wound healing via PPARγ-activating oxylipins acting holistically to dampen inflammation","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":4,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"HORIZON EUROPE European Research Council; Agencia Estatal de Investigación; Royal Society; Medical Research Council; University of Bristol; European Regional Development Fund; UK Research and Innovation; Wellcome Trust","keywords":"Oxylipin; Inflammation; Cell biology; Chemistry; Downregulation and upregulation; Wound healing; Cancer research; Biology; Biochemistry; Immunology","score_opus":0.038496258607344375,"score_gpt":0.3183349643386375,"score_spread":0.2798387057312931,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4413980866","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98889333,0.000110272085,0.000060263774,0.0046863146,0.000065195236,0.00029818242,0.000003970498,0.000024028594,0.0058584185],"genre_scores_gemma":[0.99834454,0.0000132253745,0.0009630726,0.00020425313,0.00004562208,0.00001853257,0.0000013994721,0.0000039998145,0.00040532844],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99874675,0.000027745045,0.0005490318,0.0002379864,0.00021582686,0.00022265303],"domain_scores_gemma":[0.9988178,0.00038799897,0.000455755,0.000014744369,0.000308713,0.00001499173],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0017378627,0.00012148193,0.00019646282,0.00026126602,0.0004886356,0.000036797577,0.0005574698,0.00015084138,0.000030349598],"category_scores_gemma":[0.0022889224,0.0000912979,0.000064848726,0.00061324105,0.0004002484,0.0005272842,0.00018331509,0.00026089305,0.000009036003],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009743143,0.00002102749,0.0006551477,0.00007453883,0.000035076642,3.732732e-9,0.00042662202,0.00020942946,0.9767106,0.016061284,0.0001703393,0.0055384603],"study_design_scores_gemma":[0.00020714522,0.00004589222,0.03454466,0.0002430439,0.000012407047,0.000004906871,0.0003979522,0.0005200412,0.9549411,0.007604895,0.0013862002,0.00009177071],"about_ca_topic_score_codex":0.000030669267,"about_ca_topic_score_gemma":3.6755995e-7,"teacher_disagreement_score":0.033889513,"about_ca_system_score_codex":0.00006363679,"about_ca_system_score_gemma":0.00008984382,"threshold_uncertainty_score":0.37582397},"labels":[],"label_agreement":null},{"id":"W4414167020","doi":"10.1007/s12325-025-03359-5","title":"A Narrative Review of the Immunomodulatory Effects of Acthar® Gel Beyond Its Steroidogenic Properties","year":2025,"lang":"en","type":"article","venue":"Advances in Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Mallinckrodt Pharmaceuticals","keywords":"Immune system; Narrative review; Rheumatoid arthritis; Adverse effect; Receptor; Melanocortin; Rheumatology; Adrenocorticotropic hormone","score_opus":0.005476303432366392,"score_gpt":0.25526784872908204,"score_spread":0.24979154529671566,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414167020","genre_codex":"review","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4938832,0.5049893,0.0000046489868,0.000117104064,0.0003169279,0.00037659414,7.2380124e-7,0.00000446156,0.00030702047],"genre_scores_gemma":[0.8113586,0.18748799,0.000005336983,0.00030676078,0.0000030391889,0.000059803362,0.0000028295228,0.000004345911,0.0007713246],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989573,0.00042689196,0.0003515705,0.00011357763,0.000030496603,0.00012021241],"domain_scores_gemma":[0.9992898,0.00013573674,0.00020825896,0.00028157886,0.000082395454,0.000002194159],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00023614548,0.00010696237,0.00029459532,0.00006800054,0.00005337782,0.0000014900379,0.00025582817,0.00007316051,0.00003549],"category_scores_gemma":[0.00012114135,0.00006500381,0.00009613798,0.00021777482,0.00016925149,0.00018090068,0.0000429273,0.0001354704,0.00000604718],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00039937196,0.00006245763,0.00021402033,0.0014379353,0.00010864101,1.7817268e-7,0.0024280467,0.000003911342,0.9586222,0.00042307714,0.00007015419,0.03623],"study_design_scores_gemma":[0.000937462,0.0001309709,0.0030301197,0.004616285,0.000011312821,0.0000017641195,0.00018310074,6.101943e-7,0.9715616,0.00022416806,0.019240266,0.000062307],"about_ca_topic_score_codex":0.0000058485552,"about_ca_topic_score_gemma":0.0000036611964,"teacher_disagreement_score":0.31750134,"about_ca_system_score_codex":0.000024742261,"about_ca_system_score_gemma":0.00008370472,"threshold_uncertainty_score":0.26507783},"labels":[],"label_agreement":null},{"id":"W4414295182","doi":"10.1101/2025.09.12.675895","title":"Time in sympatry correlates with the strength of reproductive isolation in hybridising <i>Typha</i>","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trent University","funders":"Natural Sciences and Engineering Research Council of Canada; Trent University; Compute Canada","keywords":"Sympatry; Reproductive isolation; Allopatric speciation; Biological dispersal; Sympatric speciation; Taxon","score_opus":0.005005871922330519,"score_gpt":0.19326933793093878,"score_spread":0.18826346600860827,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414295182","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9944939,0.0037720583,0.00009139395,0.00036368094,0.00045060244,0.00067974377,0.000049048904,0.000064519474,0.000035036188],"genre_scores_gemma":[0.99949074,0.00016316501,0.00011783011,0.000033968317,0.000035870526,0.000073251555,0.0000025335655,0.00002578375,0.000056844452],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979432,0.000505194,0.00057533005,0.00059509685,0.000064425534,0.00031675625],"domain_scores_gemma":[0.99816877,0.00022619416,0.00048685248,0.00088422507,0.0002225595,0.000011415768],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009286143,0.00031689295,0.0005063176,0.0004111697,0.00008455779,0.000024295126,0.00033519333,0.00045930626,0.000030823714],"category_scores_gemma":[0.00023349546,0.0002584408,0.00007189578,0.0005661669,0.00022408592,0.000143799,0.00022999108,0.0009514683,0.0000391232],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005767253,0.00015092245,0.013675434,0.00016043794,0.00017923498,0.000009702118,0.00017346069,0.00064088433,0.98396266,0.0002531237,0.00020660955,0.00001082006],"study_design_scores_gemma":[0.0010634899,0.00008143774,0.10826424,0.0013751108,0.000093422255,6.019977e-8,0.000039576924,0.00026138284,0.8875136,0.0000032479368,0.00092192384,0.00038254765],"about_ca_topic_score_codex":0.00014041581,"about_ca_topic_score_gemma":0.000013707833,"teacher_disagreement_score":0.096449085,"about_ca_system_score_codex":0.00017365684,"about_ca_system_score_gemma":0.00054175575,"threshold_uncertainty_score":0.99998677},"labels":[],"label_agreement":null},{"id":"W4414497631","doi":"10.1016/j.xcrm.2025.102369","title":"Chimeric hemagglutinin-based universal influenza mRNA vaccine induces protective immunity and bone marrow plasma cells in rhesus macaques","year":2025,"lang":"en","type":"article","venue":"Cell Reports Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Acuitas Therapeutics (Canada)","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Antibody; Virus; Vaccination; Humoral immunity; Immunity; Immune system; Hemagglutinin (influenza); Bone marrow; Heterologous","score_opus":0.008085361678629133,"score_gpt":0.23687792931574386,"score_spread":0.22879256763711472,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414497631","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98618644,0.004958536,0.000039275415,0.0005221111,0.00078045944,0.0006506848,0.0000016045482,0.00007430475,0.0067865523],"genre_scores_gemma":[0.99735874,0.0001610183,0.00003746089,0.000249749,0.000029570836,0.000034717923,0.00005479614,0.000014872896,0.0020590795],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981292,0.0003533329,0.0007422975,0.00037383713,0.00006300725,0.0003383452],"domain_scores_gemma":[0.99869233,0.00030038087,0.0004339295,0.00040662018,0.00013675852,0.000029992778],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008393766,0.00026534335,0.00054386596,0.00056741905,0.00017488658,0.000008634007,0.0001097258,0.00029706236,0.00022387296],"category_scores_gemma":[0.0005558191,0.00022277902,0.000047272064,0.00046369474,0.00025874304,0.000088115354,0.000087587396,0.0005976472,0.000015808868],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00091312884,0.00011755467,0.0037951868,0.0001212421,0.00006889906,0.00023718303,0.00082925084,0.000019806885,0.9873336,0.000041052932,0.0013859785,0.0051370994],"study_design_scores_gemma":[0.0038044455,0.00035563332,0.03040508,0.00044894055,0.00008631404,0.00009120521,0.001231075,0.000029908659,0.9359011,0.00013912474,0.02728212,0.00022502521],"about_ca_topic_score_codex":0.0009693062,"about_ca_topic_score_gemma":0.000039327784,"teacher_disagreement_score":0.05143249,"about_ca_system_score_codex":0.000100522535,"about_ca_system_score_gemma":0.00025628982,"threshold_uncertainty_score":0.9084665},"labels":[],"label_agreement":null},{"id":"W4414531801","doi":"10.1038/d41586-025-03064-x","title":"Mitochondria expel tainted DNA — spurring age-related inflammation","year":2025,"lang":"en","type":"article","venue":"Nature","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"World Federation of Science Journalists","funders":"","keywords":"Organelle; DNA; Inflammation; Mitochondrial DNA; Mitochondrion","score_opus":0.00334818387319936,"score_gpt":0.23868399286617054,"score_spread":0.23533580899297118,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414531801","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9676185,0.0061426777,0.00021540115,0.0023806791,0.0030687186,0.00038272073,0.0000031489408,0.00024612638,0.019941986],"genre_scores_gemma":[0.97218233,0.00004093951,0.00005818491,0.00027398526,0.000038850674,0.000021402266,0.00027081664,0.000010332538,0.027103135],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99905974,0.00016623976,0.00030321037,0.00020470278,0.00003337037,0.00023276922],"domain_scores_gemma":[0.9994321,0.00009494389,0.00009761156,0.00026938127,0.00009756769,0.000008433723],"candidate_categories":["research_integrity"],"consensus_categories":[],"category_scores_codex":[0.0001796781,0.00014600279,0.0001790338,0.00025165666,0.00017102409,0.000024899087,0.00018801808,0.0020503143,0.00033833893],"category_scores_gemma":[0.00031508523,0.00013325017,0.000089990055,0.00031273134,0.00006897288,0.00015636306,0.000061019244,0.0017125934,0.0005449828],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018639954,0.000015881245,0.00008194642,0.000018754023,0.00013582128,0.000008135623,0.00038542776,0.0000092405835,0.9617372,0.011097419,0.014877714,0.011446061],"study_design_scores_gemma":[0.001202718,0.00002669291,0.0054183602,0.00012412839,0.00003463594,0.000014479452,0.0001797077,0.0000241587,0.75050783,0.0011481561,0.24117336,0.00014574465],"about_ca_topic_score_codex":0.000010492381,"about_ca_topic_score_gemma":0.000008516842,"teacher_disagreement_score":0.22629565,"about_ca_system_score_codex":0.000066218665,"about_ca_system_score_gemma":0.000061720275,"threshold_uncertainty_score":0.9992452},"labels":[],"label_agreement":null},{"id":"W4414957617","doi":"10.1073/pnas.2502741122","title":"Regulation of an lncRNA <i>irf8</i> by the Ikzf1/Myb complex drives neutrophil development","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Ministry of Agriculture","funders":"Chongqing Institute of Green and Intelligent Technology, Chinese Academy of Sciences; Chongqing Medical University; Southwest University; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Macrophage; Neutrophil extracellular traps; Innate immune system; Inflammation; Zebrafish; Immune system; IRF8; Myeloid; Integrin alpha M","score_opus":0.02556743975824801,"score_gpt":0.28437740870694983,"score_spread":0.25880996894870184,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414957617","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9904181,0.00047665427,0.000003298006,0.0034598662,0.000034004206,0.00016776216,0.00000513669,0.000008141631,0.005427042],"genre_scores_gemma":[0.9984408,0.00002061157,0.00028202237,0.00015644485,0.000008765727,0.000007500376,0.0000019485553,0.0000017076171,0.0010802239],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9991502,0.000027252448,0.00038605562,0.00013761174,0.00018795965,0.00011089956],"domain_scores_gemma":[0.9991984,0.00012279012,0.00042350873,0.000012290421,0.0002383139,0.0000047345043],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011434838,0.00007336364,0.00013069237,0.00012639123,0.0003293516,0.0000099561685,0.0006486588,0.00009379665,0.00002535197],"category_scores_gemma":[0.00017193405,0.000042885757,0.000044888602,0.00044834166,0.00095542904,0.00028781153,0.00010483138,0.00011446894,0.0000018245589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00005208677,0.000032685908,0.00035564345,0.000021610502,0.00002777125,3.5857517e-10,0.00041193367,0.000023128849,0.96160614,0.032644954,0.0029497237,0.0018743105],"study_design_scores_gemma":[0.0001934285,0.000029321523,0.12218967,0.00005266882,0.000009605473,0.0000026068228,0.00021994015,0.00007136133,0.86134243,0.0074252845,0.008423496,0.00004019881],"about_ca_topic_score_codex":0.0000050141225,"about_ca_topic_score_gemma":7.5940726e-8,"teacher_disagreement_score":0.121834025,"about_ca_system_score_codex":0.000022483437,"about_ca_system_score_gemma":0.000062191706,"threshold_uncertainty_score":0.3520318},"labels":[],"label_agreement":null},{"id":"W4414975443","doi":"10.1016/j.bbalip.2025.159694","title":"ABHD6 suppression attenuates pro-inflammatory responses in mice and promotes anti-inflammatory polarization of macrophages during endotoxin stress","year":2025,"lang":"en","type":"article","venue":"Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre Hospitalier de l’Université de Montréal","funders":"Canadian Institutes of Health Research; Servier Canada","keywords":"Inflammation; Lipopolysaccharide; Docosahexaenoic acid; Lipid signaling; Eicosapentaenoic acid; Cytokine","score_opus":0.004134537448277454,"score_gpt":0.22461102694793308,"score_spread":0.22047648949965562,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4414975443","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9954153,0.0033395495,0.000017984688,0.00030775557,0.0001684753,0.0005305508,0.00006324011,0.000036891197,0.00012025311],"genre_scores_gemma":[0.9987427,0.00071066106,0.00007536109,0.0000321887,0.000013985118,0.000029398298,0.00017014507,0.000020583371,0.00020499104],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9976346,0.00081581617,0.00068393594,0.00047674324,0.000050069804,0.00033884976],"domain_scores_gemma":[0.99894285,0.00023165056,0.00039015946,0.0003132256,0.000096635915,0.000025492478],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00034798967,0.0003179302,0.0005524987,0.0004751214,0.00012326479,0.00001590626,0.00022960018,0.00046493823,0.000009995608],"category_scores_gemma":[0.00011621986,0.00028907147,0.00010519557,0.00022777729,0.00065452297,0.00013573069,0.00024530772,0.000287119,0.0000029544049],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010101533,0.00017720276,0.0038307859,0.0005756731,0.00014092049,0.0000045097936,0.0005329475,0.0000012581677,0.9930379,0.00033489455,0.0000105417375,0.00034324062],"study_design_scores_gemma":[0.0015570201,0.00021852378,0.06695296,0.00032229713,0.00006997474,0.000006992811,0.00019692608,0.000011717557,0.9302858,0.00009203836,0.00005753972,0.0002281851],"about_ca_topic_score_codex":0.000041877276,"about_ca_topic_score_gemma":0.0000031544896,"teacher_disagreement_score":0.06312217,"about_ca_system_score_codex":0.000017418437,"about_ca_system_score_gemma":0.00011598306,"threshold_uncertainty_score":0.99995613},"labels":[],"label_agreement":null},{"id":"W4415306513","doi":"10.1093/ajrcmb/aanag106","title":"Upper and Lower Respiratory Tract Compartmentalization in Pediatric Stem Cell Transplantation","year":2025,"lang":"en","type":"preprint","venue":"American Journal of Respiratory Cell and Molecular Biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"CancerCare Manitoba; University of Manitoba; Alberta Children's Hospital","funders":"National Institutes of Health; Gateway Foundation; American Thoracic Society","keywords":"Compartmentalization (fire protection); Transplantation; Respiratory tract; Stem cell; Respiratory system; Cell","score_opus":0.007482333169279159,"score_gpt":0.24849013812949047,"score_spread":0.24100780496021132,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4415306513","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9664565,0.030985182,0.0013653643,0.000059217433,0.00050575926,0.00024227519,0.000025222334,0.0000099509425,0.0003505447],"genre_scores_gemma":[0.9947735,0.0043470403,0.00008542949,0.0006330795,0.000039292077,0.000011250418,0.000045344852,0.000015209414,0.00004985426],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99730563,0.0012225591,0.0008255845,0.00034054252,0.000047485766,0.00025817702],"domain_scores_gemma":[0.9986046,0.00014333108,0.0009075055,0.00019196057,0.000111922585,0.000040662788],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00060561177,0.0002945651,0.0006520128,0.00071164145,0.000067946385,0.000019730063,0.00018411588,0.0003867102,0.000015165489],"category_scores_gemma":[0.000011548115,0.0002692853,0.00013622553,0.0001722345,0.00029122847,0.0000676448,0.00012460713,0.0006843373,0.0000044164226],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017890423,0.00039833077,0.073815905,0.0005143558,0.00015019812,0.00015238802,0.0010796213,0.00018989417,0.88408023,0.00018588637,0.00022427278,0.037419852],"study_design_scores_gemma":[0.011805354,0.010633874,0.12188899,0.00058019883,0.0013855528,0.00027416708,0.0015815822,0.000017920996,0.8003145,0.00075692625,0.048996016,0.0017649434],"about_ca_topic_score_codex":0.000019570298,"about_ca_topic_score_gemma":0.0000034417444,"teacher_disagreement_score":0.083765775,"about_ca_system_score_codex":0.000053239135,"about_ca_system_score_gemma":0.00030317646,"threshold_uncertainty_score":0.9999759},"labels":[],"label_agreement":null},{"id":"W4416015890","doi":"10.1101/2025.11.06.686934","title":"Flagellin-mediated TLR5 activation enhances innate immune responses in healthy and diseased human airway epithelium","year":2025,"lang":"","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"Institut National de la Santé et de la Recherche Médicale; Agence Nationale de la Recherche; European Commission; Université de Lille","keywords":"TLR5; Innate immune system; Flagellin; Respiratory epithelium; Immune system; Pneumonia; Cystic fibrosis; Airway; Mucosal immunology; TLR4","score_opus":0.010230631119535444,"score_gpt":0.24093633698423916,"score_spread":0.2307057058647037,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416015890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9796344,0.013775284,0.00038922945,0.0014244976,0.0018812802,0.0022275741,0.0003580149,0.00029217714,0.000017530663],"genre_scores_gemma":[0.98830193,0.010151507,0.0001594412,0.0003882165,0.00017190482,0.0004944222,0.000018043498,0.00010765508,0.00020686183],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9906578,0.003325995,0.0024615026,0.0019308828,0.00023009704,0.001393691],"domain_scores_gemma":[0.9945496,0.0011886809,0.001579048,0.0017632112,0.00073741237,0.00018209389],"candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":["metaepi_narrow","research_integrity"],"category_scores_codex":[0.0029371134,0.0012919449,0.0017115733,0.001959716,0.0009909836,0.00022321183,0.00086964347,0.0021964638,0.00025141067],"category_scores_gemma":[0.0015630723,0.0014446871,0.00029007203,0.0014072368,0.0007737326,0.0006188084,0.0007352633,0.0023523339,0.00023985062],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.008019201,0.0005122254,0.002864571,0.0010969968,0.00046799736,0.000030922,0.0001542628,0.000015318736,0.98625916,0.00049399486,0.000057802903,0.000027518388],"study_design_scores_gemma":[0.0034338112,0.00044257575,0.21735021,0.0020107764,0.00015430759,3.741117e-8,0.000030332552,0.00007235372,0.7692258,0.000005166294,0.0062117917,0.0010628664],"about_ca_topic_score_codex":0.00042886657,"about_ca_topic_score_gemma":0.000018241819,"teacher_disagreement_score":0.21703343,"about_ca_system_score_codex":0.0006645907,"about_ca_system_score_gemma":0.002161696,"threshold_uncertainty_score":0.99998325},"labels":[],"label_agreement":null},{"id":"W4416446337","doi":"10.1093/jimmun/vkaf283.141","title":"The effectiveness and immunogenicity of an oil-in-water nano-emulsion protein subunit vaccine against Pseudomonas aeruginosa in diet induced obese mice 2193","year":2025,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; Canadian Institutes of Health Research; National Institutes of Health","keywords":"Immunogenicity; Immunogen; Immunization; Pseudomonas aeruginosa; Population; Spleen; Antibody; Pathogen","score_opus":0.005380969267054749,"score_gpt":0.23274388011594083,"score_spread":0.22736291084888607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416446337","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865878,0.011879752,0.000009978678,0.0006982317,0.0004126989,0.00030495372,0.0000012033453,0.0000070628043,0.00009832337],"genre_scores_gemma":[0.9976345,0.0021335504,0.000008760305,0.00003625727,0.000010533284,0.000015681333,0.0000067530436,0.000010960366,0.00014302414],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99433887,0.00417014,0.00092179095,0.0001389123,0.000050485414,0.0003797806],"domain_scores_gemma":[0.9979822,0.0010148615,0.00039998986,0.00038608798,0.00020726772,0.00000956979],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0038749764,0.0002059613,0.0005255916,0.00039626475,0.00023815573,0.000013505262,0.00056829496,0.00031521844,0.000012799834],"category_scores_gemma":[0.00037993654,0.00011054041,0.00009016642,0.00028604057,0.00024606186,0.00022478992,0.00021923585,0.00084136025,0.000009432397],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.02438462,0.00016601785,0.00064925273,0.00003596905,0.00025401113,0.0000093935505,0.0009087853,0.00001852072,0.95703846,0.00017424452,0.000003682256,0.016357034],"study_design_scores_gemma":[0.004455308,0.0009565152,0.089878924,0.00033936466,0.00004159023,0.00014053508,0.0007994925,0.000006230384,0.9023694,0.0004283985,0.00047902137,0.00010522652],"about_ca_topic_score_codex":0.0003906945,"about_ca_topic_score_gemma":0.00020006503,"teacher_disagreement_score":0.08922967,"about_ca_system_score_codex":0.000097752476,"about_ca_system_score_gemma":0.00010342344,"threshold_uncertainty_score":0.4507707},"labels":[],"label_agreement":null},{"id":"W4416446460","doi":"10.1093/jimmun/vkaf283.075","title":"The Role of Treg-expressed Mmp12 During the Resolution of Acute Lung Injury 2111","year":2025,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lung; Immune system; Phenotype; Inflammation; Strain (injury); Acute injury","score_opus":0.0027790499148740537,"score_gpt":0.2216896925947171,"score_spread":0.21891064267984306,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416446460","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9577323,0.038703848,0.000085637,0.0019805396,0.000658429,0.00015519661,0.0000057796833,0.0000070734395,0.0006711705],"genre_scores_gemma":[0.9928499,0.005470583,0.000007877797,0.000028541972,0.000022431605,0.000004003635,0.0000024672188,0.0000070638052,0.0016071406],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99761057,0.0012204216,0.00080505636,0.00006559317,0.0000533714,0.00024497768],"domain_scores_gemma":[0.9975656,0.0007657874,0.00092923513,0.0004716102,0.00026334723,0.000004417321],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014582406,0.000121689685,0.00031805827,0.00016318653,0.0004313312,0.0000068848863,0.0007898894,0.00018579618,0.000043730117],"category_scores_gemma":[0.00021085131,0.0000581298,0.00017519688,0.0002161148,0.0006695025,0.00010435628,0.00017371059,0.0005638524,0.000010080541],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058770147,0.00003996446,0.00019696906,0.0000093512335,0.0014600413,6.59614e-7,0.0009835798,0.000018474013,0.9835782,0.0023987102,0.00059713324,0.004839927],"study_design_scores_gemma":[0.00096295436,0.00027486103,0.02045888,0.0000915305,0.00028731753,0.00013752842,0.001483337,0.0000112160815,0.95721054,0.00108761,0.017941274,0.00005295674],"about_ca_topic_score_codex":0.000053286723,"about_ca_topic_score_gemma":0.0000046749155,"teacher_disagreement_score":0.035117563,"about_ca_system_score_codex":0.000049637845,"about_ca_system_score_gemma":0.0001475486,"threshold_uncertainty_score":0.33174944},"labels":[],"label_agreement":null},{"id":"W4416447998","doi":"10.1093/jimmun/vkaf283.866","title":"Structure of the interleukin-5 receptor complex exemplifies the organizing principle of common beta cytokine signaling 3024","year":2025,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Receptor; Signal transduction; Functional selectivity; Ternary complex; Immune system; Cell surface receptor; Cell signaling; Chemokine receptor; Chemokine","score_opus":0.011592242836183191,"score_gpt":0.25139390833345027,"score_spread":0.23980166549726709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416447998","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9898404,0.0059199873,0.00012911385,0.0027191213,0.0010592312,0.00017781675,0.0000124187245,0.0000067579326,0.00013516356],"genre_scores_gemma":[0.99913025,0.00026663204,0.000035502082,0.00013876325,0.000028492552,7.028375e-7,0.0000071897575,0.000010135484,0.00038232282],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975414,0.0012108486,0.0009096355,0.000073224466,0.00006055706,0.00020430343],"domain_scores_gemma":[0.9971716,0.00082484796,0.0011272256,0.00049611705,0.00037585964,0.0000043697523],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00086872757,0.00015156952,0.00046652142,0.00014088789,0.0002896895,0.000007921514,0.0011271216,0.00018755689,0.00036052722],"category_scores_gemma":[0.0002863272,0.00007006192,0.00015354135,0.00035179022,0.00075009296,0.00007266327,0.00035233842,0.0007466744,0.0000070977767],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00096987624,0.000037743088,0.0006244302,0.000023742425,0.0007640175,3.0479535e-7,0.0020173972,0.00007389328,0.9903408,0.0032023068,0.0007458406,0.0011996184],"study_design_scores_gemma":[0.0007803415,0.0002299385,0.016025333,0.00019273245,0.00016965019,0.00017538357,0.0019391904,0.0000025451188,0.9614922,0.00055165624,0.018380236,0.000060835606],"about_ca_topic_score_codex":0.00006757934,"about_ca_topic_score_gemma":0.000023526705,"teacher_disagreement_score":0.02884867,"about_ca_system_score_codex":0.00005060588,"about_ca_system_score_gemma":0.0001657997,"threshold_uncertainty_score":0.39475203},"labels":[],"label_agreement":null},{"id":"W4416674354","doi":"10.1021/acsnano.5c12658","title":"Natural Macrophage Membrane-Coated Nanoparticles as a Multifaceted Sepsis Therapeutic to Sequester Inflammatory and Toxic Mediators","year":2025,"lang":"en","type":"article","venue":"ACS Nano","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Novo Nordisk Fonden; Biomedical Advanced Research and Development Authority; Bundesministerium für Bildung und Forschung; Public Health Agency of Canada; Wellcome Trust; Wellcome; A.P. Giannini Foundation","keywords":"Sepsis; Macrophage; Inflammation; Immune system; Drug; Cytokine; Systemic administration; Host response","score_opus":0.005816537933959768,"score_gpt":0.2442766491593312,"score_spread":0.23846011122537142,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416674354","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9930699,0.004383303,0.000005795142,0.0010221909,0.0006722142,0.0004078786,0.0000041206526,0.000138794,0.00029580193],"genre_scores_gemma":[0.9908316,0.00011769244,0.000021130983,0.0015249349,0.000012317784,0.000051092808,0.00003248033,0.00001685231,0.0073918966],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99865276,0.00030275885,0.00033885214,0.00028978882,0.00004536754,0.00037047063],"domain_scores_gemma":[0.9993279,0.00019351082,0.000071589304,0.0002971132,0.00007985192,0.000030024175],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025147633,0.00021352759,0.00025594546,0.0002542803,0.00021041301,0.000041695268,0.0001848225,0.00025374928,0.00016142083],"category_scores_gemma":[0.00016966359,0.00018183686,0.000054764347,0.0003127918,0.00013005277,0.00018090317,0.00012767318,0.00020815099,0.0008273412],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004818916,0.000025721916,0.0007069334,0.000027881566,0.00019002632,0.000008657429,0.0011275217,0.000002017615,0.98925763,0.00036713498,0.00039862626,0.0074059656],"study_design_scores_gemma":[0.0013475291,0.000085168176,0.007580772,0.000058793583,0.000056177705,0.000021272099,0.00024045436,0.0000091899365,0.9672477,0.00005964713,0.023101445,0.00019185118],"about_ca_topic_score_codex":0.000048295507,"about_ca_topic_score_gemma":0.000020341222,"teacher_disagreement_score":0.022702819,"about_ca_system_score_codex":0.000054184038,"about_ca_system_score_gemma":0.000095934585,"threshold_uncertainty_score":0.99995065},"labels":[],"label_agreement":null},{"id":"W4416730629","doi":"10.3389/fimmu.2025.1679375","title":"Adopting orphan receptors: zebrafish Tlr4 homologs mediate responses to group IX/X transition metals","year":2025,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"Canadian Institutes of Health Research; University of Alberta; Cancer Research Institute","keywords":"Zebrafish; TLR4; Homologous chromosome; Gene knockdown; Receptor; Function (biology); Innate immune system","score_opus":0.006634435231385344,"score_gpt":0.22900013832271265,"score_spread":0.2223657030913273,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416730629","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9006355,0.026432594,0.049937576,0.006207162,0.014247552,0.0011185516,0.000025044066,0.00032403672,0.0010720011],"genre_scores_gemma":[0.9779582,0.0014954249,0.008810349,0.002440108,0.00007988518,0.00043152328,0.0005334245,0.00006295646,0.008188119],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99619097,0.0015755363,0.00084074377,0.0005638624,0.000051771745,0.00077711354],"domain_scores_gemma":[0.9988247,0.00034180822,0.00017918051,0.00053035223,0.000100665515,0.000023293427],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0012218114,0.00034282156,0.000737089,0.0015184813,0.0002740913,0.000029634848,0.00051550486,0.0007541274,0.00024904832],"category_scores_gemma":[0.00074863166,0.00035534205,0.00017247933,0.0008946094,0.0003586825,0.00029362587,0.00014931071,0.00063413347,0.000345863],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010929812,0.0003765515,0.001961633,0.00007282274,0.0014593705,0.00005236504,0.00489785,0.000056024423,0.7921137,0.0031376835,0.07091062,0.11403155],"study_design_scores_gemma":[0.006101807,0.0010803265,0.023510674,0.00041277357,0.0002049781,0.00010235771,0.0052173403,0.000035231453,0.24606565,0.001777424,0.714566,0.00092545105],"about_ca_topic_score_codex":0.00017452157,"about_ca_topic_score_gemma":0.00004568246,"teacher_disagreement_score":0.64365536,"about_ca_system_score_codex":0.0002472158,"about_ca_system_score_gemma":0.0001311207,"threshold_uncertainty_score":0.99988985},"labels":[],"label_agreement":null},{"id":"W4416875915","doi":"10.1681/asn.2025wwvkbzxq","title":"Effect of Polymyxin B Hemoadsorption on Mortality in Patients with Endotoxic Septic Shock: The TIGRIS Trial","year":2025,"lang":"en","type":"article","venue":"Journal of the American Society of Nephrology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Polymyxin B; Polymyxin; Endotoxic shock; Septic shock; Antibiotics; Sepsis","score_opus":0.004879693102053281,"score_gpt":0.2509212801876661,"score_spread":0.2460415870856128,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416875915","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997951,0.00015814493,0.000024451403,0.0012384977,0.00020879654,0.00035971584,0.000002814641,0.0000027928963,0.000053792864],"genre_scores_gemma":[0.9989419,0.00004917828,0.000013120591,0.000854218,0.000023318167,0.0000053272615,0.0000022837787,0.000005050906,0.00010563152],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9977987,0.0013400058,0.00052476,0.00008915492,0.00008155577,0.0001658634],"domain_scores_gemma":[0.99780107,0.0006937505,0.0011459616,0.0002650465,0.00008784668,0.000006356843],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010303615,0.000117720505,0.00051691366,0.0000779177,0.00006631607,0.0000025902884,0.00031434602,0.00009812495,0.00001753316],"category_scores_gemma":[0.00009849524,0.00005843585,0.00034736114,0.00031399494,0.0007440492,0.000046077042,0.00005347184,0.00040767746,0.0000022461497],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.1792122,0.0006069802,0.11109449,0.00006305476,0.0019132743,7.637149e-7,0.0010016444,0.00020806289,0.68425596,0.00006596328,0.010051432,0.01152618],"study_design_scores_gemma":[0.024757467,0.009970419,0.8483895,0.00008154205,0.00023869677,0.000008339789,0.00020264242,0.000011379168,0.11455846,0.000049363636,0.0016601363,0.00007205751],"about_ca_topic_score_codex":0.00010087607,"about_ca_topic_score_gemma":0.0000058816354,"teacher_disagreement_score":0.73729503,"about_ca_system_score_codex":0.00006222629,"about_ca_system_score_gemma":0.00012843526,"threshold_uncertainty_score":0.27414802},"labels":[],"label_agreement":null},{"id":"W4416943253","doi":"10.1080/15384047.2025.2590881","title":"Toll-like receptor 4 inhibition sensitizes non-small cell lung cancer to radiotherapy","year":2025,"lang":"en","type":"article","venue":"Cancer Biology & Therapy","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Sherbrooke","funders":"Fonds de Recherche du Québec - Santé; Canada Excellence Research Chairs, Government of Canada; Université de Sherbrooke; Cancer Research Society","keywords":"Radiation therapy; Lung cancer; Receptor; Sensitivity (control systems); Cell; Cell growth; Chemotherapy","score_opus":0.008463146016488123,"score_gpt":0.27408852939472134,"score_spread":0.2656253833782332,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4416943253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9317851,0.05690518,0.001717065,0.004331249,0.0037243287,0.0008249563,0.00005546282,0.00011435343,0.0005422847],"genre_scores_gemma":[0.9162294,0.046202052,0.0003218492,0.0160914,0.00038390406,0.0010879989,0.0003351034,0.000058603615,0.019289657],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99826735,0.0003468715,0.0003784758,0.00048204802,0.00002182183,0.000503403],"domain_scores_gemma":[0.99921477,0.00012277457,0.00013292243,0.0003581357,0.00014293389,0.000028458348],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00025971766,0.00030216872,0.00043902555,0.00027455203,0.0002617367,0.000019671581,0.00020236909,0.0005019995,0.001425292],"category_scores_gemma":[0.0000090742415,0.00026120828,0.00014112513,0.00031533634,0.0001552929,0.00006933527,0.000042715386,0.00028375053,0.00013078463],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0014698644,0.000049545222,0.0033267501,0.000019711635,0.00033942724,0.0000011383869,0.00096341973,0.000031149662,0.91132677,0.00013012918,0.037886616,0.04445549],"study_design_scores_gemma":[0.0021290728,0.00017017085,0.0022572577,0.000086660395,0.000023056251,0.0000025218214,0.000087278924,0.000009193077,0.64393926,0.00003220172,0.3510385,0.00022484627],"about_ca_topic_score_codex":0.0005534562,"about_ca_topic_score_gemma":0.000087271714,"teacher_disagreement_score":0.31315187,"about_ca_system_score_codex":0.00025241618,"about_ca_system_score_gemma":0.00032578496,"threshold_uncertainty_score":0.999984},"labels":[],"label_agreement":null},{"id":"W4417027259","doi":"10.1016/j.nano.2025.102887","title":"PapMV nanoparticles: A novel pathway to SARS-CoV-2 protection, distinct from Imidazoquinolines","year":2025,"lang":"en","type":"article","venue":"Nanomedicine Nanotechnology Biology and Medicine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Centre hospitalier de l'Université Laval; Centre hospitalier universitaire de Québec","funders":"Canadian Institutes of Health Research; Fonds de recherche du Québec; Canada First Research Excellence Fund; Centre Hospitalier Universitaire de Québec; Canada Research Chairs; Canada Foundation for Innovation; Université Laval","keywords":"Immune system; TLR7; Innate immune system; Motility; Apoptosis; Cell; Receptor","score_opus":0.01867395773976299,"score_gpt":0.28622706065396836,"score_spread":0.26755310291420537,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417027259","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9402034,0.009224228,0.008115802,0.038760588,0.0019105533,0.0009001329,0.000028461805,0.00041023336,0.00044655812],"genre_scores_gemma":[0.9944067,0.00029657292,0.0001689249,0.0034110998,0.00015719063,0.00025206158,0.00018308061,0.000021085409,0.0011033028],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9973988,0.00019726645,0.0008782002,0.0008029165,0.000051927465,0.0006708876],"domain_scores_gemma":[0.9985617,0.00034538886,0.0002232672,0.00062926044,0.00019925289,0.000041123018],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00065922993,0.00043409702,0.0009179397,0.0009246571,0.00041787274,0.0000060711945,0.00039909163,0.0011921705,0.00011948369],"category_scores_gemma":[0.0017139628,0.00031692415,0.00006511817,0.0008998757,0.0017297015,0.00007752407,0.00025667623,0.00065719575,0.0001619922],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007297899,0.0000975368,0.002069955,0.000027068285,0.00022054465,0.000006494018,0.00034929268,1.9641196e-7,0.92924166,0.0075306618,0.0018439492,0.057882853],"study_design_scores_gemma":[0.0043844576,0.001104129,0.005430558,0.00033509184,0.00011812673,0.000106523934,0.0003919438,0.000008504562,0.7367669,0.003059536,0.24804059,0.0002536548],"about_ca_topic_score_codex":0.0008561756,"about_ca_topic_score_gemma":0.00015680995,"teacher_disagreement_score":0.24619664,"about_ca_system_score_codex":0.00007118632,"about_ca_system_score_gemma":0.00014573375,"threshold_uncertainty_score":0.9999283},"labels":[],"label_agreement":null},{"id":"W4417063817","doi":"10.1016/b978-0-443-33074-2.00012-3","title":"Endotoxin in trauma","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research; Université de Montréal; Centre Hospitalier de l’Université de Montréal","funders":"","keywords":"Gastrointestinal tract; Perspective (graphical); Clinical significance; Sepsis; Digestive tract","score_opus":0.009802820822950477,"score_gpt":0.22657404148568525,"score_spread":0.21677122066273477,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417063817","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004676806,0.006776182,0.000001161232,0.00007582264,0.0006889452,0.00049057335,0.000015754838,0.000057269062,0.9914266],"genre_scores_gemma":[0.0029797382,0.00017787304,0.00001705063,0.00018395117,0.000038827,0.00004677595,0.00014203659,0.000029688339,0.9963841],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99873865,0.00009089793,0.0005256565,0.00032360002,0.000035000154,0.00028620995],"domain_scores_gemma":[0.99924564,0.0001226479,0.00015791607,0.00042243963,0.00004075602,0.000010582009],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00025820022,0.00031883622,0.00051160215,0.00040759155,0.00007157479,0.00001224594,0.0002463075,0.00080050406,0.0011822698],"category_scores_gemma":[0.00002991709,0.00031049503,0.00019789168,0.000013274608,0.00012248267,0.0000307414,0.00008987191,0.00072017714,0.0016140076],"study_design_candidate":"design_other","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012252678,0.0000076272963,0.0000025158854,0.00004723955,0.00011658639,0.000021889826,0.00017006605,1.0765797e-7,0.008345286,0.012512831,0.0008185856,0.97783476],"study_design_scores_gemma":[0.0007293543,0.00004908617,0.000045835004,0.0005038085,0.000046801957,0.000022042634,0.000007899019,2.3565487e-7,0.024452928,0.0027990616,0.97107446,0.0002685118],"about_ca_topic_score_codex":0.0000015857463,"about_ca_topic_score_gemma":0.000036733974,"teacher_disagreement_score":0.97756624,"about_ca_system_score_codex":0.00009563954,"about_ca_system_score_gemma":0.00014518884,"threshold_uncertainty_score":0.99993473},"labels":[],"label_agreement":null},{"id":"W4417063892","doi":"10.1016/b978-0-443-33074-2.00007-x","title":"Therapeutic rationale for endotoxin removal with polymyxin B immobilized fiber column hemoperfusion (PMX-HP) for endotoxemic septic shock","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; St. Michael's Hospital","funders":"","keywords":"Hemoperfusion; Septic shock; Polymyxin B; Polymyxin; Antibiotics","score_opus":0.011823944352172266,"score_gpt":0.23429831481330474,"score_spread":0.22247437046113247,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417063892","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.002644265,0.014379809,0.00052765803,0.00038446827,0.001066424,0.012926995,0.00037039063,0.00021879943,0.9674812],"genre_scores_gemma":[0.0011112406,0.00012379028,0.0008817878,0.0005267729,0.00013756104,0.0015172774,0.0013768009,0.00012194193,0.99420285],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977003,0.00013023564,0.000800225,0.00071660016,0.00010002301,0.0005526576],"domain_scores_gemma":[0.9976892,0.0008470109,0.00044244764,0.00067213364,0.00031673923,0.000032467553],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004636748,0.00064288685,0.0009210521,0.00030666302,0.0004633543,0.000054848082,0.00036239877,0.00089050515,0.0012049924],"category_scores_gemma":[0.00006192551,0.0005543576,0.0005225376,0.000026667753,0.00024169651,0.000076715754,0.00009473663,0.00046194275,0.00026747488],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005134567,0.0000391765,8.574221e-7,0.0003306026,0.0009444728,0.00000716401,0.00026353478,0.0000028353286,0.25335777,0.0069460687,0.0021827703,0.7307902],"study_design_scores_gemma":[0.0046329494,0.00062853255,0.0000016548312,0.00056577043,0.00051032583,0.00014518741,0.000027730217,0.000019462135,0.08251298,0.0020047752,0.90838486,0.00056575186],"about_ca_topic_score_codex":0.000002013044,"about_ca_topic_score_gemma":0.00002560225,"teacher_disagreement_score":0.9062021,"about_ca_system_score_codex":0.00020177515,"about_ca_system_score_gemma":0.0007001615,"threshold_uncertainty_score":0.99970806},"labels":[],"label_agreement":null},{"id":"W4417063941","doi":"10.1016/b978-0-443-33074-2.00011-1","title":"Endotoxic septic shock","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tornado Spectral Systems (Canada)","funders":"","keywords":"Septic shock; Sepsis; Organ dysfunction; Lipopolysaccharide; Shock (circulatory); Immune system; Innate immune system","score_opus":0.00862079152675464,"score_gpt":0.2223124140190457,"score_spread":0.21369162249229107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417063941","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001159567,0.009087823,0.000004152278,0.00007614522,0.0011756498,0.0005364413,0.000023000406,0.00012774936,0.9888531],"genre_scores_gemma":[0.0012734081,0.0002671816,0.00002222762,0.00032752342,0.00008179035,0.00004470601,0.00021771976,0.000046592868,0.9977189],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986303,0.000085025305,0.00051255844,0.00038639695,0.000048958707,0.00033675498],"domain_scores_gemma":[0.998907,0.00014142024,0.00021837885,0.0006328053,0.00008234979,0.00001799633],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00020463865,0.00041440988,0.00056164473,0.00028892004,0.00017390438,0.000021272439,0.00031560977,0.0008830446,0.002680774],"category_scores_gemma":[0.000037325342,0.00039006732,0.0003288585,0.000011359402,0.0001721443,0.000034582634,0.00015805042,0.0007158985,0.005989792],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009227576,0.0000062802737,8.246344e-7,0.000088366425,0.00041870412,0.00001652351,0.000110270834,1.1058931e-7,0.01932444,0.014424133,0.0038718414,0.9616462],"study_design_scores_gemma":[0.00048044874,0.00007317244,0.0000073537853,0.00048930326,0.00018553951,0.000048199327,0.0000057539723,3.5853736e-7,0.016867924,0.002718641,0.9787745,0.00034882393],"about_ca_topic_score_codex":4.1875646e-7,"about_ca_topic_score_gemma":0.0000052118335,"teacher_disagreement_score":0.97490263,"about_ca_system_score_codex":0.00009454672,"about_ca_system_score_gemma":0.00023778455,"threshold_uncertainty_score":0.9998551},"labels":[],"label_agreement":null},{"id":"W4417064017","doi":"10.1016/b978-0-443-33074-2.00014-7","title":"Quantifying endotoxin in the blood of humans; a personal journey toward development of the endotoxin activity assay","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; Tornado Spectral Systems (Canada)","funders":"","keywords":"Immune system; Lipopolysaccharide; Sepsis; Antibody","score_opus":0.038372220273065104,"score_gpt":0.2662766616664536,"score_spread":0.22790444139338847,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417064017","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.14063044,0.004333937,0.000016061691,0.00021442246,0.00062466186,0.0015176773,0.000040293824,0.000020450223,0.85260206],"genre_scores_gemma":[0.4899515,0.00007691296,0.00006020304,0.000064585416,0.00002135081,0.00005638538,0.000019495592,0.000020147969,0.50972944],"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9979121,0.00059010385,0.0007936655,0.00028041497,0.00014450711,0.00027918917],"domain_scores_gemma":[0.9982965,0.0004590878,0.0006765777,0.00046196257,0.00009729357,0.000008607025],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015787298,0.00033901547,0.00064124697,0.0002507496,0.00019852293,0.000012608885,0.00063023315,0.00042170193,0.00017441262],"category_scores_gemma":[0.00011971551,0.00021537508,0.00035722795,0.00003606096,0.0002768225,0.00003730486,0.0002061798,0.0009866536,0.000022481536],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002608018,0.000082405844,0.000073386465,0.00032909206,0.0007107493,0.000007838503,0.010948172,2.51972e-7,0.44380724,0.0043555605,0.00008087561,0.5393436],"study_design_scores_gemma":[0.001089581,0.000058751622,0.0013080956,0.0014146005,0.00022294413,0.00004292456,0.00024639574,8.6269495e-7,0.63133144,0.00026423624,0.36374885,0.00027133108],"about_ca_topic_score_codex":0.0000053674903,"about_ca_topic_score_gemma":0.000105464824,"teacher_disagreement_score":0.5390723,"about_ca_system_score_codex":0.00006748192,"about_ca_system_score_gemma":0.00075028476,"threshold_uncertainty_score":0.8782741},"labels":[],"label_agreement":null},{"id":"W4417064019","doi":"10.1016/b978-0-443-33074-2.00003-2","title":"Sepsis and endotoxin: A brief history","year":2025,"lang":"en","type":"book-chapter","venue":"Elsevier eBooks","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tornado Spectral Systems (Canada)","funders":"","keywords":"Sepsis; Lipopolysaccharide; Infectious disease (medical specialty); Immune system; Septic shock; Disease","score_opus":0.01031333300938247,"score_gpt":0.20810465722418456,"score_spread":0.19779132421480208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417064019","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000110219924,0.04587886,0.0000018462978,0.00009546838,0.00093346415,0.00037438615,0.000015926144,0.00007865369,0.9525112],"genre_scores_gemma":[0.00044462882,0.0008148108,0.000023877092,0.0006233151,0.000052613315,0.000034987468,0.00010265843,0.00003414562,0.99786896],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.99889135,0.00007708223,0.00038685245,0.00036852527,0.000036841153,0.0002393234],"domain_scores_gemma":[0.99916375,0.00012577328,0.00019835397,0.00042840847,0.00006502345,0.000018698436],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00018719064,0.00033863407,0.0004968053,0.00024495285,0.00011003183,0.000010572952,0.00016601561,0.0007167112,0.0012547467],"category_scores_gemma":[0.00003369996,0.00033431564,0.00017716257,0.0000051111756,0.00028263507,0.000036014182,0.00014750303,0.0005409571,0.00052445824],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00010808879,0.000004506374,0.0000013977348,0.0000980303,0.00032389106,0.000013825433,0.00026778155,1.043564e-8,0.0114009455,0.015399573,0.01499705,0.9573849],"study_design_scores_gemma":[0.00052548485,0.0000606258,0.000016352677,0.0003565301,0.00016690695,0.000048772687,0.000005416274,1.9585951e-7,0.0042582573,0.00115849,0.99310225,0.00030073448],"about_ca_topic_score_codex":0.0000020204498,"about_ca_topic_score_gemma":0.0000075073217,"teacher_disagreement_score":0.9781052,"about_ca_system_score_codex":0.00019037703,"about_ca_system_score_gemma":0.00025254558,"threshold_uncertainty_score":0.9999109},"labels":[],"label_agreement":null},{"id":"W4417279188","doi":"10.1016/j.medj.2025.100931","title":"TL1A blockade in inflammatory bowel diseases: Clinical trials to watch","year":2025,"lang":"en","type":"article","venue":"Med","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Western University","funders":"","keywords":"Inflammatory bowel disease; Clinical trial; Blockade; Disease; Ulcerative colitis; Phases of clinical research","score_opus":0.03444172260839322,"score_gpt":0.37844676005299965,"score_spread":0.3440050374446064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W4417279188","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9899747,0.0015248187,0.00012208249,0.0051549994,0.0014967563,0.0005695241,0.0000068968598,0.000067220004,0.0010830112],"genre_scores_gemma":[0.9843697,0.00011964889,0.000023054372,0.000787965,0.00006586483,0.00011113113,0.00006035853,0.000009063237,0.014453217],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964433,0.0019869898,0.0010301721,0.00023919273,0.000029389865,0.00027100457],"domain_scores_gemma":[0.99836975,0.0011209026,0.00011521202,0.0003263171,0.00004233128,0.000025509782],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0032391842,0.00012566484,0.00046638085,0.00018376892,0.00006761789,0.000016226626,0.00021077652,0.00028328798,0.00033740263],"category_scores_gemma":[0.004158868,0.000105299514,0.0001628923,0.00018318415,0.00007123531,0.00006130732,0.00009550953,0.00026219815,0.0010484585],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007941355,0.00056659506,0.15170223,0.00010390835,0.0006076106,0.000046508867,0.0013466671,0.00003257565,0.5745855,0.0028354856,0.13731731,0.122914255],"study_design_scores_gemma":[0.004654453,0.00011095168,0.31402752,0.00014564733,0.0000863654,0.0000025726513,0.00023747605,0.000010254603,0.10897538,0.00044597682,0.5710907,0.00021269324],"about_ca_topic_score_codex":0.0000297081,"about_ca_topic_score_gemma":0.000024411554,"teacher_disagreement_score":0.46561012,"about_ca_system_score_codex":0.00004625745,"about_ca_system_score_gemma":0.00017949574,"threshold_uncertainty_score":0.99972934},"labels":[],"label_agreement":null},{"id":"W48193803","doi":"10.1096/fasebj.23.1_supplement.572.12","title":"Anti‐inflammatory benefits of an antibiotic via modulation of neutrophil and macrophage function: The example of tulathromycin","year":2009,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipopolysaccharide; Apoptosis; Phagocytosis; Nitric oxide; Inflammation; Zymosan; Immune system; Microbiology; Macrophage; Antibiotics; Immunology; Chemistry; Biology; Biochemistry; In vitro; Endocrinology","score_opus":0.01136425781723933,"score_gpt":0.21203346501465142,"score_spread":0.2006692071974121,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W48193803","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99692416,0.0022830884,0.00027302513,0.00014388809,0.0001828677,0.00011675359,0.0000043939185,0.0000060443904,0.000065774184],"genre_scores_gemma":[0.9996153,0.00021848598,0.000024443136,0.000024209638,0.000044958917,2.1803642e-7,0.000009658709,0.0000056937347,0.000057023957],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989581,0.00033458666,0.00043651235,0.0000816099,0.000058691756,0.00013046456],"domain_scores_gemma":[0.9990824,0.00008176732,0.00045703078,0.00025131257,0.000115797986,0.000011676303],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00073110947,0.000095063566,0.00021849628,0.00008739691,0.00019897275,0.000007846883,0.00015571922,0.00009715447,0.00006443887],"category_scores_gemma":[0.000019969135,0.000055739532,0.000070051035,0.000090730355,0.00020329202,0.00016789694,0.000021434138,0.00020947975,0.0000041664543],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037964887,0.000046479185,0.00078483997,0.0000112913585,0.000067004905,9.1661616e-7,0.00049096445,0.0008655217,0.9728032,0.00087456015,0.000015999985,0.02365957],"study_design_scores_gemma":[0.00054613024,0.0004170989,0.40053698,0.000033431337,0.000053145814,0.00021786454,0.000093710085,0.0001304066,0.5975482,0.00033424477,0.00004757884,0.000041218886],"about_ca_topic_score_codex":0.000043135613,"about_ca_topic_score_gemma":0.0000022892266,"teacher_disagreement_score":0.39975214,"about_ca_system_score_codex":0.000008613717,"about_ca_system_score_gemma":0.0000320564,"threshold_uncertainty_score":0.22729921},"labels":[],"label_agreement":null},{"id":"W53192118","doi":"10.1096/fasebj.21.6.a975-c","title":"Human Neutrophils produce alternatively spliced variants of 5‐Lipoxygenase mRNA","year":2007,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Université de Moncton","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Gene isoform; Alternative splicing; Messenger RNA; Intron; Molecular biology; Exon; Biochemistry; Open reading frame; Biology; Arachidonic acid; Arachidonate 5-lipoxygenase; Biosynthesis; RNA splicing; Lipoxygenase; Enzyme; Chemistry; Gene; RNA; Peptide sequence","score_opus":0.017390337698242834,"score_gpt":0.26539266363165204,"score_spread":0.2480023259334092,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W53192118","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9959924,0.0007070767,0.0006434798,0.0003551699,0.0005668328,0.00014889686,0.000003903791,0.00001591114,0.0015662794],"genre_scores_gemma":[0.9979456,0.00005035619,0.000043018452,0.00008538728,0.00018028344,0.0000014317592,0.0000072528223,0.000011760448,0.0016749142],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987358,0.0002915078,0.0004787951,0.000115115894,0.00006475503,0.00031405463],"domain_scores_gemma":[0.9990553,0.00009399285,0.00042139168,0.00026122824,0.00014533282,0.00002274082],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0018152728,0.00012481151,0.00018987428,0.00014184836,0.0003981988,0.000017774188,0.00036146207,0.000092993716,0.00036585692],"category_scores_gemma":[0.00008984268,0.00008107707,0.000105383195,0.00012317872,0.00015703232,0.00014190323,0.000051218198,0.0004549758,0.00017816968],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004095697,0.000068076115,0.00020317906,0.000004988798,0.00016237832,0.000022799113,0.0008448508,0.000013593798,0.9934951,0.0009923456,0.0005806692,0.00320245],"study_design_scores_gemma":[0.0011040162,0.0002086546,0.04293034,0.00003631321,0.000039084898,0.0006985451,0.00023060749,0.0000017448459,0.95274377,0.0004509601,0.0014618,0.00009418947],"about_ca_topic_score_codex":0.00003917573,"about_ca_topic_score_gemma":0.0000048599695,"teacher_disagreement_score":0.042727157,"about_ca_system_score_codex":0.000036484867,"about_ca_system_score_gemma":0.00006132068,"threshold_uncertainty_score":0.40058768},"labels":[],"label_agreement":null},{"id":"W58915119","doi":"10.4049/jimmunol.178.supp.97.5","title":"The adhesion molecules CD44 and hyaluronan, not physical trapping, are responsible for neutrophil sequestration in inflamed liver sinusoids (97.5)","year":2007,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Cell adhesion molecule; Intravital microscopy; CD44; Integrin; Adhesion; Cell biology; Immunology; Biology; Microcirculation; Chemistry; Medicine; In vitro; Receptor; Internal medicine; Biochemistry","score_opus":0.016566340544739013,"score_gpt":0.254278281134972,"score_spread":0.23771194059023296,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W58915119","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98795354,0.008531654,0.0004372037,0.0024087706,0.0003408693,0.00026564376,0.0000015441548,0.000009932595,0.00005085116],"genre_scores_gemma":[0.9978706,0.0014411849,0.000052151703,0.00011914752,0.00007661774,0.00000610875,0.000004490825,0.000013280274,0.00041640757],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9981265,0.0007873219,0.0005812056,0.00010449406,0.000053343127,0.0003471078],"domain_scores_gemma":[0.99732673,0.001731348,0.0005305864,0.00020865609,0.00019012272,0.000012554337],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0024256813,0.00015265963,0.0002816915,0.00019923745,0.00034091453,0.000018791607,0.00028365682,0.00020594559,0.0000064335263],"category_scores_gemma":[0.0004590989,0.00008993513,0.00009711716,0.00013128371,0.0004342217,0.0001672293,0.00005493242,0.00053223554,0.000017990938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.010396677,0.000058520516,0.00007378237,0.00000770885,0.00011308973,0.000013151813,0.0014447937,0.00002243484,0.9576355,0.0019713729,0.000134649,0.028128304],"study_design_scores_gemma":[0.002892741,0.0023305858,0.08724427,0.00009884515,0.00008930567,0.0006944302,0.0019695468,0.00004956011,0.89013535,0.0014034098,0.0129256155,0.00016635192],"about_ca_topic_score_codex":0.000027913256,"about_ca_topic_score_gemma":0.00006432312,"teacher_disagreement_score":0.08717049,"about_ca_system_score_codex":0.000063508305,"about_ca_system_score_gemma":0.00013911293,"threshold_uncertainty_score":0.36674482},"labels":[],"label_agreement":null},{"id":"W59177652","doi":"10.4049/jimmunol.182.supp.94.6","title":"Differentiation of blood monocytes to dendritic cells following reverse transmigration across the blood-brain barrier (94.6)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"CD14; Neuroinflammation; Microglia; Biology; Cell biology; Dendritic cell; Immunology; Molecular biology; C-C chemokine receptor type 7; Monocyte; Chemistry; Inflammation; Chemokine; Flow cytometry; Antigen","score_opus":0.00706192613987569,"score_gpt":0.23668723753644522,"score_spread":0.22962531139656953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W59177652","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9876974,0.0063540144,0.00096334115,0.0040756864,0.0006323181,0.00022940262,0.00000459542,0.000011152348,0.000032086],"genre_scores_gemma":[0.99833083,0.00045774848,0.000057775233,0.0004281654,0.00004229749,0.0000028503355,0.000006808592,0.000009936819,0.0006635927],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99777716,0.00097258773,0.00076587865,0.00009681682,0.00007323792,0.00031431805],"domain_scores_gemma":[0.99841577,0.00059321785,0.00049258803,0.00032225915,0.00016179615,0.0000143522075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0013651281,0.00016383704,0.00036057728,0.00013424756,0.00030730074,0.000016670345,0.0004892844,0.00020353495,0.000078379955],"category_scores_gemma":[0.00027883635,0.000096793636,0.00025558952,0.00019296988,0.00013817468,0.00019812772,0.00003462052,0.00043773802,0.000037967206],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007989163,0.00010759228,0.000058049016,0.0000046048144,0.00065672095,0.000004762739,0.006751907,0.00007600872,0.98706514,0.00020987233,0.00033434233,0.003932074],"study_design_scores_gemma":[0.0019387471,0.0011970054,0.0111143,0.00007550216,0.0005478081,0.00033244278,0.0018142742,0.0000047587505,0.98072666,0.0003072282,0.0018328497,0.00010842013],"about_ca_topic_score_codex":0.000036142406,"about_ca_topic_score_gemma":0.000016201877,"teacher_disagreement_score":0.011056251,"about_ca_system_score_codex":0.000020904903,"about_ca_system_score_gemma":0.000064663756,"threshold_uncertainty_score":0.39471298},"labels":[],"label_agreement":null},{"id":"W602667689","doi":"10.1096/fasebj.20.5.a1450-d","title":"RU38486 influences the core temperature response of near‐term pregnant rats to intraperitoneal administration of lipopolysaccharide","year":2006,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipopolysaccharide; Term (time); Core temperature; Core (optical fiber); Administration (probate law); Medicine; Chemistry; Anesthesia; Endocrinology; Physics","score_opus":0.01156003017389131,"score_gpt":0.2521851548631309,"score_spread":0.2406251246892396,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W602667689","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650955,0.0015852249,0.000016330441,0.0012498905,0.0003602457,0.0002131963,0.000014536323,0.000009102212,0.00004190178],"genre_scores_gemma":[0.9992062,0.00006243439,0.000034428038,0.000092924514,0.00007417378,0.0000071499594,0.000011179319,0.0000074256027,0.0005041078],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99851125,0.00058384554,0.000526406,0.00009189724,0.000086587854,0.00020002802],"domain_scores_gemma":[0.99889237,0.0003096174,0.0003613807,0.00026070594,0.00016067993,0.000015249617],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0011330559,0.00012350964,0.00019584916,0.00007532094,0.00041262622,0.000046705914,0.00035970708,0.00013182385,0.00012032153],"category_scores_gemma":[0.0001621647,0.00006454254,0.00010363122,0.00013727183,0.00033931172,0.00012663964,0.000040077957,0.00037377368,0.000025756251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.005322401,0.000047778383,0.0006366639,0.000006922997,0.00006365636,0.0000069290536,0.0014753274,0.000086839354,0.9903482,0.00027591182,0.0005773404,0.0011520053],"study_design_scores_gemma":[0.0003591654,0.0005674966,0.04165388,0.00012638647,0.000040896364,0.00056393456,0.0005459474,0.000004178343,0.9553647,0.000098618715,0.0006014686,0.00007334332],"about_ca_topic_score_codex":0.000052517444,"about_ca_topic_score_gemma":0.00002138203,"teacher_disagreement_score":0.041017216,"about_ca_system_score_codex":0.000021657508,"about_ca_system_score_gemma":0.00030564636,"threshold_uncertainty_score":0.3173629},"labels":[],"label_agreement":null},{"id":"W63073187","doi":"10.1007/978-1-4419-9088-4_1","title":"Lipopolysaccharides of Pseudomonas aeruginosa","year":2004,"lang":"eo","type":"book-chapter","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Pseudomonas aeruginosa; Lipopolysaccharide; Bacterial outer membrane; Microbiology; Innate immune system; CD14; Proinflammatory cytokine; TLR4; Bacteria; Immune system; Tumor necrosis factor alpha; Receptor; Toll-like receptor; Lipid A; Bacterial cell structure; Biology; Chemistry; Cell biology; Inflammation; Immunology; Biochemistry; Escherichia coli","score_opus":0.014514315857794165,"score_gpt":0.22838472750539077,"score_spread":0.2138704116475966,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W63073187","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.07216591,0.022110097,0.0004601518,0.0010186263,0.0036262178,0.0013163077,0.00013141372,0.00023271887,0.89893854],"genre_scores_gemma":[0.6172823,0.004289968,0.00015083865,0.00013826172,0.00010837428,0.000009471148,0.00023056135,0.00006595885,0.3777243],"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9975452,0.00010106516,0.0012438282,0.00051759,0.00010297063,0.0004893817],"domain_scores_gemma":[0.99786615,0.00023025378,0.0007975937,0.00080015656,0.0002694262,0.00003642582],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00036164938,0.00063969626,0.0010735237,0.0004799843,0.00018693013,0.000017315351,0.0004643215,0.0017225042,0.034983315],"category_scores_gemma":[0.000075815944,0.0005812155,0.000577438,0.000054409884,0.00074204063,0.00015967876,0.00020337984,0.0007661563,0.0063978657],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00053252233,0.0000610155,0.000024847026,0.00014066216,0.00073213346,0.000016326656,0.00026191978,0.0000042863226,0.44735092,0.5426202,0.0005759056,0.0076792766],"study_design_scores_gemma":[0.002170011,0.00070342,0.00029265997,0.00096968986,0.0004492317,0.00019316477,0.00014832457,0.0000010461723,0.8602066,0.020804191,0.11318342,0.00087825954],"about_ca_topic_score_codex":0.00042469433,"about_ca_topic_score_gemma":0.000020953179,"teacher_disagreement_score":0.54511636,"about_ca_system_score_codex":0.000112480484,"about_ca_system_score_gemma":0.00035490905,"threshold_uncertainty_score":0.99966395},"labels":[],"label_agreement":null},{"id":"W67208262","doi":"","title":"Function of NOD-like receptors in immunity and disease.","year":2010,"lang":"en","type":"article","venue":"PubMed","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Innate immune system; Nod; Immunity; Inflammasome; Biology; Pattern recognition receptor; Receptor; Acquired immune system; Effector; Immunology; Cell biology; Priming (agriculture); Function (biology); Disease; Neuroscience; Immune system; Inflammation; Medicine; Genetics; Gene","score_opus":0.007948623637134057,"score_gpt":0.18808656160077458,"score_spread":0.18013793796364053,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W67208262","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99716616,0.00058206584,0.000009752001,0.00018433676,0.0012274429,0.00021794518,0.0000015662331,0.000016240356,0.00059450936],"genre_scores_gemma":[0.9983857,0.000045405162,0.000004646082,0.0000345253,0.000010068986,0.00013182659,0.000036056605,0.000004293556,0.0013474372],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99950546,0.00010117014,0.0001537717,0.000082638326,0.000013852857,0.00014308702],"domain_scores_gemma":[0.9996998,0.00005978089,0.000056187746,0.00014394647,0.000023195877,0.000017142682],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034186436,0.00005603386,0.00009478115,0.000100377154,0.000040525378,0.0000038295116,0.00005455225,0.000099953206,0.0001088135],"category_scores_gemma":[0.00021558716,0.000050907976,0.000023261402,0.000077892255,0.00009814578,0.00009629617,0.000031399006,0.00019567258,0.000021979331],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0023631072,0.00017023478,0.096368685,0.000044848897,0.000076042015,0.0000010370613,0.0003684167,9.168475e-7,0.34903452,0.0017629102,0.0020543672,0.54775494],"study_design_scores_gemma":[0.00053157785,0.000013799175,0.9417235,0.0000033785734,0.000011795471,0.0000017238199,0.000043129974,8.445981e-7,0.020567225,0.00022798285,0.03682003,0.000054963228],"about_ca_topic_score_codex":0.00005995867,"about_ca_topic_score_gemma":0.000034129174,"teacher_disagreement_score":0.84535486,"about_ca_system_score_codex":0.00000712064,"about_ca_system_score_gemma":0.0000186805,"threshold_uncertainty_score":0.2075967},"labels":[],"label_agreement":null},{"id":"W67524005","doi":"10.1007/978-1-4614-4118-2_15","title":"Innate Immunity as Orchestrator of Bone Marrow Homing for Hematopoietic Stem/Progenitor Cells","year":2012,"lang":"en","type":"review","venue":"Advances in experimental medicine and biology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":21,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Alberta","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; National Institutes of Health","keywords":"Homing (biology); Haematopoiesis; Bone marrow; Stem cell; Innate immune system; Progenitor cell; Immunity; Hematopoietic stem cell; Immunology; Biology; Cell biology; Immune system","score_opus":0.05584767219206285,"score_gpt":0.3737080444162952,"score_spread":0.31786037222423236,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W67524005","genre_codex":"review","genre_gemma":"review","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"review","genre_consensus":"review","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.011087476,0.98648816,0.000012170952,0.000020294588,0.0012359167,0.0009406699,0.00002124569,0.000016931755,0.00017710518],"genre_scores_gemma":[0.031762082,0.9672432,0.000069676185,0.000031458887,0.0001166129,0.00031550802,0.00028943783,0.000027556724,0.00014446324],"study_design_codex":"design_other","study_design_gemma":"not_applicable","domain_scores_codex":[0.9977648,0.000458124,0.0010163729,0.00032189384,0.000025567766,0.0004132309],"domain_scores_gemma":[0.9984396,0.0006330613,0.00059457164,0.00026820114,0.00003438496,0.000030176956],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00053476746,0.00039520577,0.0018070006,0.00028781037,0.00008707002,0.0000025168001,0.00019996769,0.00058564363,0.00011093963],"category_scores_gemma":[0.000049832266,0.00027761463,0.00016276247,0.00015532208,0.00067489024,0.00014196451,0.00011884237,0.00033313726,0.000025886342],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00034131663,0.00017795815,0.000017092862,0.005404542,0.00017513095,0.0000030286685,0.0012806995,2.3452792e-8,0.31960425,0.0013529493,0.000041006508,0.671602],"study_design_scores_gemma":[0.0011270669,0.0010466884,6.967932e-7,0.0027376958,0.00019568899,0.0001588322,0.0016838624,1.05087665e-7,0.17090628,0.00008590213,0.8217963,0.00026088188],"about_ca_topic_score_codex":0.000037997364,"about_ca_topic_score_gemma":0.000002576802,"teacher_disagreement_score":0.8217553,"about_ca_system_score_codex":0.000058202204,"about_ca_system_score_gemma":0.000082122766,"threshold_uncertainty_score":0.9999676},"labels":[],"label_agreement":null},{"id":"W6901642010","doi":"10.60692/44tmt-zj686","title":"Potential mediators of in ovo delivered double stranded (ds) RNA-induced innate response against low pathogenic avian influenza virus infection","year":2018,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"","keywords":"In ovo; TLR3; Interferon; Innate immune system; RNA silencing; Virus; Influenza A virus subtype H5N1; Interferon type I; Macrophage","score_opus":0.016789019465094864,"score_gpt":0.2232258006999267,"score_spread":0.20643678123483183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901642010","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711883,0.000010081243,0.0007317023,0.00001211181,0.0010477616,0.00057622185,0.00005445095,0.00012621915,0.00032259096],"genre_scores_gemma":[0.9996733,0.0000018953563,0.00001034838,0.00007084908,0.000042327967,0.000049847655,0.0000919163,0.000014066561,0.00004543029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997546,0.00053957704,0.0012503184,0.0001818067,0.00012137995,0.00036091695],"domain_scores_gemma":[0.9985259,0.000018667966,0.0006651322,0.00038656962,0.00037010893,0.00003362328],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011546813,0.0002471281,0.00038068468,0.00085139106,0.00018272824,0.000049101793,0.0001784357,0.0004715618,0.000075577635],"category_scores_gemma":[0.000065079024,0.00022485261,0.00012732994,0.0004278148,0.00009852536,0.00094830024,0.00006471343,0.00022136024,0.0014336695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.043026764,0.00003603531,0.050686188,0.00047569798,0.00038459475,0.000013267605,0.109931655,0.00037549954,0.7898253,0.00006612879,0.000057133082,0.005121692],"study_design_scores_gemma":[0.009839244,0.00034686923,0.24755102,0.00028231888,0.000043610173,0.000044996705,0.002605416,0.00032191584,0.738429,0.0000010268863,0.00020691029,0.00032765899],"about_ca_topic_score_codex":0.00015627944,"about_ca_topic_score_gemma":0.000008133536,"teacher_disagreement_score":0.19686483,"about_ca_system_score_codex":0.00018542411,"about_ca_system_score_gemma":0.00014580818,"threshold_uncertainty_score":0.9993438},"labels":[],"label_agreement":null},{"id":"W6901684341","doi":"10.60692/3zb2d-dm818","title":"Toll-like receptor 9 and 4 gene polymorphisms in susceptibility and severity of malaria: a meta-analysis of genetic association studies","year":2021,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Malaria; TLR9; Allele; Genetic association; Genetic predisposition; Plasmodium falciparum; Allele frequency; Toll-like receptor","score_opus":0.04116136619377514,"score_gpt":0.2351793782621878,"score_spread":0.19401801206841265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901684341","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981832,0.0010709248,0.00020720072,0.000086569285,0.000110211964,0.00017334816,0.00012110061,0.000012511886,0.0000349433],"genre_scores_gemma":[0.9995344,0.00001429756,0.0001544617,0.000026523348,0.0000026980329,0.000019409335,0.00006199687,0.0000024861938,0.0001836752],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99842453,0.00042403184,0.0008408637,0.00012511293,0.00006539785,0.00012009261],"domain_scores_gemma":[0.99883306,0.000066352884,0.00056729297,0.00021355167,0.00031017896,0.000009547826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008250525,0.00011161223,0.00077392336,0.00030878562,0.000048187387,0.00001354186,0.000043189455,0.00017243791,0.0000641779],"category_scores_gemma":[0.00013646923,0.000091869755,0.00016101262,0.00034328597,0.000050199844,0.000232962,0.00006642642,0.00006729167,0.0000133934045],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026955185,0.000010768219,0.8769242,0.00035432662,0.047624648,0.0000012513456,0.0655099,0.00006840792,0.008896381,0.00007986272,0.00003948225,0.00022118735],"study_design_scores_gemma":[0.0008147745,0.000042860076,0.9137933,0.000016874737,0.011910626,0.000014594124,0.007880125,0.00009026735,0.06527071,0.000001408224,0.00004991651,0.000114522605],"about_ca_topic_score_codex":0.000035770365,"about_ca_topic_score_gemma":0.000008247084,"teacher_disagreement_score":0.057629775,"about_ca_system_score_codex":0.0000764672,"about_ca_system_score_gemma":0.000033128967,"threshold_uncertainty_score":0.37463397},"labels":[],"label_agreement":null},{"id":"W6901830099","doi":"10.60692/xnz6w-wqj73","title":"Toll-like receptor 9 (-1237 T/C, -1486 T/C) and the risk of gastric cancer: a meta-analysis of genetic association studies","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Odds ratio; Confidence interval; Etiology; Genetic association; Cancer; Genotype; Ethnic group; Meta-analysis","score_opus":0.04397331965950292,"score_gpt":0.2441206535067944,"score_spread":0.2001473338472915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901830099","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971871,0.0012738775,0.00032030023,0.00015340155,0.00027013966,0.00037487928,0.00028540657,0.000053651,0.0000812493],"genre_scores_gemma":[0.99901,0.00012482856,0.000019776293,0.000025914613,0.000007250659,0.00013038427,0.000050518283,0.0000039694196,0.0006273369],"study_design_codex":"meta_analysis","study_design_gemma":"observational","domain_scores_codex":[0.9981423,0.0006174358,0.00089013675,0.00009219956,0.00010159982,0.00015633318],"domain_scores_gemma":[0.997872,0.000218619,0.0013180852,0.00024416798,0.00033930392,0.000007804054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015452756,0.00012606339,0.0008121244,0.0005756345,0.0001389412,0.000017021453,0.000107487416,0.00011737786,0.000055894187],"category_scores_gemma":[0.00020515034,0.00007379663,0.0003852582,0.00086966483,0.00008186725,0.00017912671,0.00005936442,0.000081515325,0.00016504325],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012694962,0.000005650907,0.2860182,0.00067271467,0.45248732,4.218856e-7,0.25091785,0.003857291,0.0005185882,0.00026788795,0.002740696,0.001243876],"study_design_scores_gemma":[0.00769751,0.00020910219,0.5875821,0.00009221351,0.28902435,0.000015393489,0.0902233,0.0034317893,0.018178526,0.0000077396335,0.0030270068,0.0005109228],"about_ca_topic_score_codex":0.00010113163,"about_ca_topic_score_gemma":0.0000029751204,"teacher_disagreement_score":0.30156395,"about_ca_system_score_codex":0.00006773495,"about_ca_system_score_gemma":0.000026824093,"threshold_uncertainty_score":0.30093393},"labels":[],"label_agreement":null},{"id":"W6901980725","doi":"10.6084/m9.figshare.12032991","title":"Additional file 2 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chemokine; Gene expression; Receptor; Chemokine receptor; Gene; Chemotaxis; CXC chemokine receptors; CCR1","score_opus":0.014385211692415313,"score_gpt":0.21044639270948248,"score_spread":0.19606118101706718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6901980725","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02644335,0.0004147018,3.816736e-7,0.0006440992,0.000019112596,0.0005067426,0.9715535,0.000021277472,0.00039681958],"genre_scores_gemma":[0.38718376,0.0000010743511,0.0000062748445,0.00026737968,0.000020109499,0.0005242994,0.6116201,0.0000068540453,0.00037015587],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990641,0.00024416752,0.0003511678,0.00013846043,0.000054739023,0.00014738775],"domain_scores_gemma":[0.9983071,0.0012346439,0.00020502074,0.00014049157,0.000100743826,0.0000119680235],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007970757,0.000106243606,0.00021916171,0.00009094878,0.00003706176,0.0000053997032,0.00020087654,0.00015691003,0.8482429],"category_scores_gemma":[0.0054718778,0.0000851326,0.00008146112,0.00032824467,0.000013881396,0.000090985726,0.000040249288,0.00016219144,0.00052630616],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022238719,0.00001864029,9.686696e-7,0.000085768,0.00002492055,0.0000011193164,0.000693964,0.000004251834,0.27054816,0.0000022654683,0.7278075,0.00059004955],"study_design_scores_gemma":[0.0008506641,0.00034415684,0.0004242394,0.0007436579,0.000005118376,0.0000142535755,0.0013185913,0.0000033592876,0.32335234,0.0000012640874,0.67285216,0.00009017411],"about_ca_topic_score_codex":0.0000055997543,"about_ca_topic_score_gemma":0.0000014345623,"teacher_disagreement_score":0.84771657,"about_ca_system_score_codex":0.00003030955,"about_ca_system_score_gemma":0.00012187987,"threshold_uncertainty_score":0.6764777},"labels":[],"label_agreement":null},{"id":"W6902073318","doi":"10.6084/m9.figshare.24070107.v1","title":"Additional file 1 of Higher plasma interleukin − 6 levels are associated with lung cavitation in drug-resistant tuberculosis","year":2023,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Tuberculosis; Table (database); Mycobacterium tuberculosis; Interleukin; Lung; Interleukin 6; Interleukin 9","score_opus":0.018470020008400135,"score_gpt":0.23010590730187172,"score_spread":0.21163588729347158,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902073318","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.03602161,0.000042516564,1.4317427e-8,0.0000615563,0.00003230483,0.00013530605,0.96274626,0.000061734536,0.00089866493],"genre_scores_gemma":[0.24596123,3.4180832e-7,0.000004149011,0.000019849205,0.000007374497,0.00045016137,0.744889,0.000011182488,0.0086566955],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9992246,0.00014827831,0.00023289786,0.00015055819,0.00005114189,0.00019252683],"domain_scores_gemma":[0.9979812,0.0015735895,0.00020264575,0.00010901044,0.00012528058,0.00000828819],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000045408742,0.00010881047,0.00017247036,0.0002007663,0.000058073318,0.00000843963,0.000098126635,0.00014679092,0.96135443],"category_scores_gemma":[0.0015645688,0.00009802065,0.000049404574,0.00038961944,0.000014581192,0.00012599473,0.00004017928,0.0001502769,0.0040026945],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00011148549,0.000027611128,0.000015931693,0.000039493447,0.00007681799,0.000011136713,0.00019228649,0.000013785358,0.0051182476,0.0000034847783,0.9941878,0.00020194676],"study_design_scores_gemma":[0.0009873557,0.000081177765,0.4178586,0.0075745895,0.000014011963,0.000004327373,0.0003269196,0.00006158232,0.020198911,0.000012004027,0.55263937,0.00024112861],"about_ca_topic_score_codex":0.00001329318,"about_ca_topic_score_gemma":0.00017426307,"teacher_disagreement_score":0.95735174,"about_ca_system_score_codex":0.00008613382,"about_ca_system_score_gemma":0.00007268392,"threshold_uncertainty_score":0.9967728},"labels":[],"label_agreement":null},{"id":"W6902093604","doi":"10.6084/m9.figshare.12032991.v1","title":"Additional file 2 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chemokine; Gene expression; Receptor; Chemokine receptor; Gene; Chemotaxis; CXC chemokine receptors; CCR1","score_opus":0.014385211692415313,"score_gpt":0.21044639270948248,"score_spread":0.19606118101706718,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902093604","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02644335,0.0004147018,3.816736e-7,0.0006440992,0.000019112596,0.0005067426,0.9715535,0.000021277472,0.00039681958],"genre_scores_gemma":[0.38718376,0.0000010743511,0.0000062748445,0.00026737968,0.000020109499,0.0005242994,0.6116201,0.0000068540453,0.00037015587],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990641,0.00024416752,0.0003511678,0.00013846043,0.000054739023,0.00014738775],"domain_scores_gemma":[0.9983071,0.0012346439,0.00020502074,0.00014049157,0.000100743826,0.0000119680235],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007970757,0.000106243606,0.00021916171,0.00009094878,0.00003706176,0.0000053997032,0.00020087654,0.00015691003,0.8482429],"category_scores_gemma":[0.0054718778,0.0000851326,0.00008146112,0.00032824467,0.000013881396,0.000090985726,0.000040249288,0.00016219144,0.00052630616],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022238719,0.00001864029,9.686696e-7,0.000085768,0.00002492055,0.0000011193164,0.000693964,0.000004251834,0.27054816,0.0000022654683,0.7278075,0.00059004955],"study_design_scores_gemma":[0.0008506641,0.00034415684,0.0004242394,0.0007436579,0.000005118376,0.0000142535755,0.0013185913,0.0000033592876,0.32335234,0.0000012640874,0.67285216,0.00009017411],"about_ca_topic_score_codex":0.0000055997543,"about_ca_topic_score_gemma":0.0000014345623,"teacher_disagreement_score":0.84771657,"about_ca_system_score_codex":0.00003030955,"about_ca_system_score_gemma":0.00012187987,"threshold_uncertainty_score":0.6764777},"labels":[],"label_agreement":null},{"id":"W6902203314","doi":"10.6084/m9.figshare.14782873","title":"Additional file 3 of Red blood cell transfusion in animal models of acute brain injuries: a systematic review protocol","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia; University of Manitoba; Centre hospitalier universitaire de Québec; Ottawa Hospital; Research Institute in Oncology and Hematology; Western University; Université de Montréal; Université Laval","funders":"","keywords":"Protocol (science); Blood transfusion; Risk assessment; Patient data; MEDLINE; Red blood cell","score_opus":0.013062643387722544,"score_gpt":0.24652745179008023,"score_spread":0.2334648084023577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902203314","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006233771,0.0006254467,2.4365892e-7,0.000053053864,0.000004302784,0.017181985,0.98098123,0.000012162461,0.0010792514],"genre_scores_gemma":[0.0005005613,0.000015892616,0.000046121004,0.000076929544,0.0000040553396,0.14678714,0.85112554,0.0000099103445,0.0014338368],"study_design_codex":"not_applicable","study_design_gemma":"systematic_review","domain_scores_codex":[0.9987799,0.00033250783,0.00057987124,0.00013973795,0.000047675057,0.00012031901],"domain_scores_gemma":[0.9986572,0.00064451766,0.00029084398,0.00021229524,0.00018793458,0.0000071606273],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006915811,0.000102383485,0.00043277588,0.00006775747,0.000026289545,0.0000029407192,0.000118352844,0.00014232981,0.9517952],"category_scores_gemma":[0.0012183854,0.000091657676,0.00012509202,0.00020446368,0.000010236736,0.00011692943,0.00004261851,0.00012356522,0.0003625963],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095199764,0.00010711764,5.4667904e-8,0.09842664,0.00006572221,0.00000663499,0.00008492168,5.3539765e-7,0.06436098,0.0000037000164,0.8368365,0.000011958439],"study_design_scores_gemma":[0.001411162,0.00036737564,0.000078334284,0.49283925,0.00012550247,0.00006948683,0.000065188004,0.000030036757,0.41680348,0.00003265723,0.08796894,0.00020861387],"about_ca_topic_score_codex":0.0000018509794,"about_ca_topic_score_gemma":0.000002672687,"teacher_disagreement_score":0.95143265,"about_ca_system_score_codex":0.000011101594,"about_ca_system_score_gemma":0.00020983329,"threshold_uncertainty_score":0.46605626},"labels":[],"label_agreement":null},{"id":"W6902282943","doi":"10.6084/m9.figshare.4456550.v2","title":"Additional file 4 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; Systemic inflammatory response syndrome; MEDLINE; Disease; Immune system","score_opus":0.0203660874685985,"score_gpt":0.2755802307416625,"score_spread":0.255214143273064,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902282943","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0002064059,0.0105279405,5.332378e-8,0.00006393488,0.000049001028,0.00023564612,0.9882202,0.000020948688,0.0006758748],"genre_scores_gemma":[0.00019783454,0.0003057526,0.000045062534,0.00033848672,0.00002955604,0.00082780153,0.99734443,0.000010529361,0.00090052676],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99897945,0.0002122042,0.00042406985,0.00016193071,0.000044139408,0.00017822553],"domain_scores_gemma":[0.9982265,0.0012404487,0.00019485307,0.00018477063,0.00014028494,0.000013116754],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000057721227,0.0001106046,0.00028308862,0.0000947652,0.00004262581,0.000005210116,0.00011560936,0.00015971862,0.9974584],"category_scores_gemma":[0.008332321,0.000100063415,0.00008725489,0.0002489939,0.000017460698,0.00013224404,0.00008697067,0.00018684503,0.0056293327],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007345298,0.000021380176,0.000001185309,0.0020052784,0.00002488695,0.00002500021,0.000035419573,1.8096274e-7,0.0016498388,0.0000013586425,0.9898877,0.006274282],"study_design_scores_gemma":[0.00025466477,0.00003875071,0.00042365576,0.24868388,0.0000085414085,0.00004636784,0.000039575636,0.0000011529187,0.03512348,0.000004452158,0.71523875,0.0001367202],"about_ca_topic_score_codex":0.0000010183367,"about_ca_topic_score_gemma":0.000024785182,"teacher_disagreement_score":0.99182904,"about_ca_system_score_codex":0.000032170883,"about_ca_system_score_gemma":0.0007845763,"threshold_uncertainty_score":0.9975169},"labels":[],"label_agreement":null},{"id":"W6902351529","doi":"10.6084/m9.figshare.26650398.v1","title":"Additional file 1 of Nicotinamide mononucleotide as a therapeutic agent to alleviate multi-organ failure in sepsis","year":2024,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Lawson Health Research Institute; Western University","funders":"","keywords":"Phagocytosis; Sepsis; Flow cytometry; Cytokine; Nicotinamide mononucleotide; Table (database)","score_opus":0.02058896533396095,"score_gpt":0.25387002169757733,"score_spread":0.23328105636361637,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6902351529","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0019727964,0.000674193,9.861519e-7,0.0002748153,0.000050422157,0.00024528566,0.9960072,0.000070095,0.0007041735],"genre_scores_gemma":[0.050592694,0.0000054775055,0.00010883308,0.00027028073,0.000020412446,0.000661627,0.94008386,0.000024493216,0.0082323095],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.999213,0.00010351828,0.00024231333,0.00020264204,0.000034090383,0.00020445493],"domain_scores_gemma":[0.999033,0.0006843706,0.00005245726,0.00016235663,0.00005216042,0.00001567893],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000034827783,0.00012563329,0.00015772138,0.00018777589,0.00004195315,0.000018296809,0.00015140515,0.00014089236,0.99071896],"category_scores_gemma":[0.00083986245,0.000116502066,0.000094328076,0.00022422065,0.000008950547,0.00009911515,0.000078242876,0.00018687933,0.055576317],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000037384925,0.000034549157,0.0000014155625,0.00007975243,0.00006885772,0.000012600012,0.00034358716,0.000012669876,0.01488266,0.0000076243996,0.9800427,0.004476219],"study_design_scores_gemma":[0.00018134198,0.00007344042,0.0028614167,0.0023952003,0.0000058978844,0.000018853438,0.000112970134,0.00006465795,0.023173463,0.000015819314,0.970972,0.00012495808],"about_ca_topic_score_codex":0.000015976137,"about_ca_topic_score_gemma":0.0000629453,"teacher_disagreement_score":0.93514264,"about_ca_system_score_codex":0.000048249596,"about_ca_system_score_gemma":0.00012108226,"threshold_uncertainty_score":0.945159},"labels":[],"label_agreement":null},{"id":"W6912161306","doi":"10.5281/zenodo.15218787","title":"Thereva foxi Cole 1923","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal British Columbia Museum","funders":"","keywords":"Glacier; Mile; Mountain range (options); Summit; Boreal; Pavilion; Mount","score_opus":0.01692222566888225,"score_gpt":0.23811555312461405,"score_spread":0.2211933274557318,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6912161306","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.15133017,0.0018133974,0.005047854,0.0027543586,0.0006917726,0.0008333159,0.00007100999,0.0014316554,0.83602643],"genre_scores_gemma":[0.9691518,0.00014778486,0.000046470992,0.00033541129,0.000038797392,7.851818e-8,0.0016092422,0.00044434294,0.028226066],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9987996,0.00045109048,0.00020713896,0.00022828618,0.000045782137,0.00026805862],"domain_scores_gemma":[0.99927855,0.000035006593,0.00006259771,0.00034622318,0.00025927674,0.00001837294],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00050132023,0.00009980347,0.00012116782,0.00020943816,0.0016725728,0.00017651237,0.0005589371,0.000107211796,0.019341255],"category_scores_gemma":[0.00039797788,0.00009905832,0.000049949966,0.000354033,0.00014345866,0.00013242383,0.0005057056,0.00022166278,0.02497521],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002782107,0.00011138068,0.0000046807368,0.00004056252,0.00013415854,0.0000035267788,0.00059313135,0.000008228756,0.41485494,0.022959296,0.39289653,0.16811535],"study_design_scores_gemma":[0.00061558746,0.00010103759,0.00063947303,0.000029565135,0.000014071417,0.000034807057,0.0002232371,0.000013388089,0.05523157,0.00021520465,0.9427897,0.000092370625],"about_ca_topic_score_codex":0.000014201107,"about_ca_topic_score_gemma":2.4419762e-7,"teacher_disagreement_score":0.8178216,"about_ca_system_score_codex":0.00007713664,"about_ca_system_score_gemma":0.000005652082,"threshold_uncertainty_score":0.9996271},"labels":[],"label_agreement":null},{"id":"W6912266976","doi":"10.5281/zenodo.3541299","title":"NPA_ref711","year":2019,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Lipid A; Lipopolysaccharide; Antagonist; Blocking (statistics)","score_opus":0.01621434576774545,"score_gpt":0.2169550574507213,"score_spread":0.20074071168297586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6912266976","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6049612,0.00050706137,0.0006172983,0.0008067511,0.00048750525,0.0005451844,0.00003487111,0.00095853367,0.3910816],"genre_scores_gemma":[0.98529345,0.00006334924,0.000027121692,0.00010619519,0.00003289883,1.768189e-8,0.0016404331,0.000505639,0.012330885],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989366,0.0003264013,0.00017806384,0.00023023781,0.00005624261,0.00027248808],"domain_scores_gemma":[0.9993218,0.000021742711,0.00006866335,0.0003556016,0.00020912738,0.000023063405],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004367196,0.000093090624,0.00011423761,0.00015182508,0.0009192747,0.00014491045,0.0005010482,0.00009778896,0.056030627],"category_scores_gemma":[0.00018347132,0.00009086293,0.000047744274,0.00020509813,0.000082653765,0.00018510366,0.00041775932,0.00021744148,0.17128377],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023158506,0.00007951397,0.000008081253,0.00003442841,0.000077562894,0.0000030689698,0.0007693093,0.000012032158,0.7455746,0.0088425465,0.1252413,0.119125985],"study_design_scores_gemma":[0.0006196282,0.00018482153,0.00077505945,0.000015231035,0.000006369021,0.00011716468,0.00018086478,0.000013386703,0.03798735,0.000067488494,0.95992386,0.00010876067],"about_ca_topic_score_codex":0.000006216799,"about_ca_topic_score_gemma":3.4257972e-8,"teacher_disagreement_score":0.8346826,"about_ca_system_score_codex":0.0000595494,"about_ca_system_score_gemma":0.0000025528414,"threshold_uncertainty_score":0.94483227},"labels":[],"label_agreement":null},{"id":"W6920673525","doi":"10.6084/m9.figshare.12032997","title":"Additional file 3 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council","keywords":"Chemokine; Gene expression; Gene; Real-time polymerase chain reaction; Messenger RNA; CCL5; Cytokine; Gating","score_opus":0.014626338197518634,"score_gpt":0.21058761628639666,"score_spread":0.19596127808887803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920673525","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026763815,0.00040991523,3.9141176e-7,0.00064350665,0.000019157289,0.0005069334,0.97124505,0.000021227717,0.00038999607],"genre_scores_gemma":[0.39187983,0.0000010598951,0.000006323539,0.00026656644,0.000020003625,0.0005233171,0.6069209,0.0000068475347,0.00037518665],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906415,0.00024401821,0.00035116822,0.00013850196,0.00005476317,0.00014742928],"domain_scores_gemma":[0.99829996,0.0012409483,0.00020477673,0.00014054803,0.00010183066,0.000011968817],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000080095284,0.000106261694,0.00021913166,0.00009097676,0.000037056023,0.0000053991944,0.00020086137,0.00015689613,0.84747964],"category_scores_gemma":[0.0055347257,0.000085138345,0.000081471284,0.0003283727,0.000013882545,0.000090993744,0.000040226372,0.00016219521,0.0005374632],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022346475,0.000018520694,9.943909e-7,0.00008589652,0.000024744106,0.0000010963822,0.000689088,0.000004206944,0.2750941,0.0000022000945,0.72327656,0.00057913165],"study_design_scores_gemma":[0.0008544041,0.00034279615,0.00042737238,0.00074925367,0.000005078925,0.000014059214,0.0013223465,0.0000033781814,0.32898408,0.0000012549498,0.6672058,0.000090147565],"about_ca_topic_score_codex":0.000005607131,"about_ca_topic_score_gemma":0.0000014358558,"teacher_disagreement_score":0.8469421,"about_ca_system_score_codex":0.000030418465,"about_ca_system_score_gemma":0.00012247279,"threshold_uncertainty_score":0.6908181},"labels":[],"label_agreement":null},{"id":"W6920800973","doi":"10.6084/m9.figshare.12032997.v1","title":"Additional file 3 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chemokine; Gene expression; Gene; Real-time polymerase chain reaction; Messenger RNA; CCL5; Cytokine; Gating","score_opus":0.014626338197518634,"score_gpt":0.21058761628639666,"score_spread":0.19596127808887803,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920800973","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026763815,0.00040991523,3.9141176e-7,0.00064350665,0.000019157289,0.0005069334,0.97124505,0.000021227717,0.00038999607],"genre_scores_gemma":[0.39187983,0.0000010598951,0.000006323539,0.00026656644,0.000020003625,0.0005233171,0.6069209,0.0000068475347,0.00037518665],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906415,0.00024401821,0.00035116822,0.00013850196,0.00005476317,0.00014742928],"domain_scores_gemma":[0.99829996,0.0012409483,0.00020477673,0.00014054803,0.00010183066,0.000011968817],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000080095284,0.000106261694,0.00021913166,0.00009097676,0.000037056023,0.0000053991944,0.00020086137,0.00015689613,0.84747964],"category_scores_gemma":[0.0055347257,0.000085138345,0.000081471284,0.0003283727,0.000013882545,0.000090993744,0.000040226372,0.00016219521,0.0005374632],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022346475,0.000018520694,9.943909e-7,0.00008589652,0.000024744106,0.0000010963822,0.000689088,0.000004206944,0.2750941,0.0000022000945,0.72327656,0.00057913165],"study_design_scores_gemma":[0.0008544041,0.00034279615,0.00042737238,0.00074925367,0.000005078925,0.000014059214,0.0013223465,0.0000033781814,0.32898408,0.0000012549498,0.6672058,0.000090147565],"about_ca_topic_score_codex":0.000005607131,"about_ca_topic_score_gemma":0.0000014358558,"teacher_disagreement_score":0.8469421,"about_ca_system_score_codex":0.000030418465,"about_ca_system_score_gemma":0.00012247279,"threshold_uncertainty_score":0.6908181},"labels":[],"label_agreement":null},{"id":"W6920835892","doi":"10.6084/m9.figshare.14782873.v1","title":"Additional file 3 of Red blood cell transfusion in animal models of acute brain injuries: a systematic review protocol","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto; University of British Columbia; University of Manitoba; Centre hospitalier universitaire de Québec; Ottawa Hospital; Research Institute in Oncology and Hematology; Western University; Université de Montréal; Université Laval","funders":"","keywords":"Protocol (science); Blood transfusion; Risk assessment; Patient data; MEDLINE; Red blood cell","score_opus":0.013062643387722544,"score_gpt":0.24652745179008023,"score_spread":0.2334648084023577,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6920835892","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006233771,0.0006254467,2.4365892e-7,0.000053053864,0.000004302784,0.017181985,0.98098123,0.000012162461,0.0010792514],"genre_scores_gemma":[0.0005005613,0.000015892616,0.000046121004,0.000076929544,0.0000040553396,0.14678714,0.85112554,0.0000099103445,0.0014338368],"study_design_codex":"not_applicable","study_design_gemma":"systematic_review","domain_scores_codex":[0.9987799,0.00033250783,0.00057987124,0.00013973795,0.000047675057,0.00012031901],"domain_scores_gemma":[0.9986572,0.00064451766,0.00029084398,0.00021229524,0.00018793458,0.0000071606273],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006915811,0.000102383485,0.00043277588,0.00006775747,0.000026289545,0.0000029407192,0.000118352844,0.00014232981,0.9517952],"category_scores_gemma":[0.0012183854,0.000091657676,0.00012509202,0.00020446368,0.000010236736,0.00011692943,0.00004261851,0.00012356522,0.0003625963],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000095199764,0.00010711764,5.4667904e-8,0.09842664,0.00006572221,0.00000663499,0.00008492168,5.3539765e-7,0.06436098,0.0000037000164,0.8368365,0.000011958439],"study_design_scores_gemma":[0.001411162,0.00036737564,0.000078334284,0.49283925,0.00012550247,0.00006948683,0.000065188004,0.000030036757,0.41680348,0.00003265723,0.08796894,0.00020861387],"about_ca_topic_score_codex":0.0000018509794,"about_ca_topic_score_gemma":0.000002672687,"teacher_disagreement_score":0.95143265,"about_ca_system_score_codex":0.000011101594,"about_ca_system_score_gemma":0.00020983329,"threshold_uncertainty_score":0.46605626},"labels":[],"label_agreement":null},{"id":"W6921337729","doi":"10.6084/m9.figshare.4456562.v2","title":"Additional file 2 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; MEDLINE; Systemic inflammatory response syndrome; Inflammation; Disease","score_opus":0.019837740925047646,"score_gpt":0.27497552459547964,"score_spread":0.255137783670432,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6921337729","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020430256,0.010596329,5.147966e-8,0.00006399181,0.000049238926,0.0002348779,0.98814136,0.000020929972,0.00068889797],"genre_scores_gemma":[0.00018700442,0.00030874216,0.000044439585,0.0003376366,0.000029895065,0.0008255634,0.9973398,0.000010494119,0.0009164284],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99897957,0.0002123705,0.0004239122,0.0001618625,0.000044121665,0.00017815141],"domain_scores_gemma":[0.99823445,0.0012313491,0.00019506947,0.00018459535,0.00014142251,0.000013115436],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000057377583,0.000110576686,0.0002830605,0.0000946887,0.00004261083,0.0000052077653,0.000115530565,0.00015971961,0.9975179],"category_scores_gemma":[0.008352345,0.000100036574,0.00008723636,0.000248924,0.000017455919,0.00013221167,0.000086988795,0.00018684643,0.005624497],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007173509,0.000021347507,0.0000011412318,0.0020027496,0.00002487906,0.000025264262,0.00003537001,1.8424339e-7,0.0016110077,0.0000013399219,0.9898506,0.006354411],"study_design_scores_gemma":[0.0002502379,0.000037593913,0.00041124516,0.24249275,0.000008401067,0.000045761994,0.000038669732,0.0000011227396,0.034381375,0.00000436498,0.7221941,0.00013442768],"about_ca_topic_score_codex":0.0000010263551,"about_ca_topic_score_gemma":0.000024656745,"teacher_disagreement_score":0.9918934,"about_ca_system_score_codex":0.000032177126,"about_ca_system_score_gemma":0.0007835959,"threshold_uncertainty_score":0.999914},"labels":[],"label_agreement":null},{"id":"W6928731481","doi":"10.3897/phytokeys..23806.plate21","title":"Plate 21 from: Bahls L, Boynton B, Johnston B (2018) Atlas of diatoms (Bacillariophyta) from diverse habitats in remote regions of western Canada. PhytoKeys 105: 1-186. https://doi.org/10.3897/phytokeys.105.23806","year":2018,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Atlas (anatomy); Scale (ratio); Myotis lucifugus; Habitat; Barrier island","score_opus":0.021954099871210764,"score_gpt":0.22447963763954612,"score_spread":0.20252553776833535,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6928731481","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.34280178,0.0035009754,0.000617735,0.0005836719,0.0017538663,0.002035611,0.0023960625,0.0007407723,0.6455695],"genre_scores_gemma":[0.2994246,0.0025644256,0.00022971882,0.00013715164,0.0006348044,4.470651e-7,0.025406951,0.0051411856,0.6664607],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99637103,0.0011021732,0.0008676914,0.00073567627,0.0002976079,0.0006257994],"domain_scores_gemma":[0.9972952,0.00011080788,0.00093037746,0.0011047028,0.00046592767,0.00009298579],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00047468807,0.00047406933,0.00080616225,0.00065889175,0.0005205756,0.00007633163,0.001264749,0.0006392851,0.08788391],"category_scores_gemma":[0.0004988785,0.0005017923,0.00014782418,0.0005440613,0.00056674815,0.00020288679,0.0010432842,0.00070283894,0.028998073],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007827846,0.0001618602,0.00013032668,0.00015762975,0.0005486022,0.000033847104,0.0011562341,0.0000076284796,0.08396907,0.00007502379,0.9051334,0.007843576],"study_design_scores_gemma":[0.0017678312,0.00028170692,0.0038071263,0.00067014,0.00008947576,0.0000068606605,0.00026683434,0.000016951031,0.024317622,0.000038742273,0.9682938,0.0004429272],"about_ca_topic_score_codex":0.10133662,"about_ca_topic_score_gemma":0.00355011,"teacher_disagreement_score":0.09778651,"about_ca_system_score_codex":0.0003353821,"about_ca_system_score_gemma":0.000095198455,"threshold_uncertainty_score":0.99974334},"labels":[],"label_agreement":null},{"id":"W6928817219","doi":"10.3897/zookeys.186.2491.map11","title":"Map 11 from: Webster R, Sweeney J, DeMerchant I (2012) New Staphylinidae (Coleoptera) records with new collection data from New Brunswick and eastern Canada: Tachyporinae. ZooKeys 186: 55-82. https://doi.org/10.3897/zookeys.186.2491","year":2012,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Data collection; Topographic map (neuroanatomy); Aerial photography; Projectile point","score_opus":0.04188016677753435,"score_gpt":0.23169821152296433,"score_spread":0.18981804474542996,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6928817219","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06393426,0.021676159,0.014086399,0.0058966214,0.0052085384,0.0053007873,0.0011037068,0.0027723296,0.8800212],"genre_scores_gemma":[0.0042615165,0.0008693496,0.00047979262,0.00021223082,0.0012919778,2.1208066e-7,0.021143764,0.002649725,0.9690914],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9962499,0.00078402867,0.00066567183,0.0011312944,0.00030073785,0.00086832384],"domain_scores_gemma":[0.99714094,0.00008535224,0.0006203195,0.0015406619,0.0002521962,0.00036052518],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00044073586,0.000642455,0.0006747994,0.00046760065,0.000985968,0.00039325436,0.0015508671,0.0006121441,0.38670385],"category_scores_gemma":[0.00021757695,0.00062582,0.00007230779,0.00035627323,0.0002007673,0.0005842963,0.0016584629,0.0009369009,0.09072459],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009072276,0.00006815738,0.0009282909,0.00006297695,0.0006246258,0.000012851254,0.0005183551,0.000001349319,0.0010721012,0.00005216299,0.98474693,0.01100497],"study_design_scores_gemma":[0.0025527545,0.00030860413,0.01142416,0.00037111947,0.0002104989,0.000013643375,0.0001687246,0.000022080443,0.0011208167,0.000022983757,0.98311657,0.0006680759],"about_ca_topic_score_codex":0.73870724,"about_ca_topic_score_gemma":0.099760726,"teacher_disagreement_score":0.63894653,"about_ca_system_score_codex":0.0003303106,"about_ca_system_score_gemma":0.000598789,"threshold_uncertainty_score":0.9996193},"labels":[],"label_agreement":null},{"id":"W6929009473","doi":"10.4224/18227302","title":"Developing optical tracking software to determine heading using MATLAB","year":2009,"lang":"en","type":"report","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Heading (navigation); Software; Tracking (education); MATLAB; Tracking system","score_opus":0.07319703873885909,"score_gpt":0.3256146292507471,"score_spread":0.252417590511888,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929009473","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8668331,0.0047380375,0.07462064,0.0014083885,0.00694268,0.0017068865,0.000037675363,0.0007728257,0.042939767],"genre_scores_gemma":[0.80300987,0.0013271652,0.1573267,0.0014833818,0.0017944684,0.000111793306,0.001600396,0.000411494,0.032934744],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9978566,0.0001420623,0.0007432032,0.0004671938,0.00014251708,0.00064841966],"domain_scores_gemma":[0.99876374,0.00018908092,0.00026128298,0.00038790074,0.0003608755,0.00003709458],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00078372814,0.00038973198,0.00069893425,0.00041297125,0.00029905833,0.00006322611,0.00028898052,0.0008712919,0.00046698772],"category_scores_gemma":[0.0010635266,0.000385681,0.00017939223,0.00021116728,0.00005654667,0.00014206498,0.0001372794,0.000642387,0.0004968448],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000121433906,0.00002171012,0.00007329162,0.00013610063,0.00013734108,0.00007178524,0.00020304462,0.00001302919,0.7035842,0.00014650448,0.0041884137,0.29130313],"study_design_scores_gemma":[0.00066309783,0.00021442122,0.0022576437,0.002641262,0.00022623762,0.0025293399,0.00007703726,0.000015658476,0.5624717,0.0004922707,0.42725134,0.0011600017],"about_ca_topic_score_codex":0.000037940332,"about_ca_topic_score_gemma":0.000009301151,"teacher_disagreement_score":0.42306292,"about_ca_system_score_codex":0.0007233144,"about_ca_system_score_gemma":0.001216104,"threshold_uncertainty_score":0.9998595},"labels":[],"label_agreement":null},{"id":"W6929151221","doi":"10.4224/8895413","title":"CFD code evaluation","year":2004,"lang":"en","type":"report","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Code (set theory); Computational fluid dynamics; Software; Key (lock)","score_opus":0.04614007174363043,"score_gpt":0.31952547773513057,"score_spread":0.27338540599150013,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929151221","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.02851225,0.010552309,0.00016113612,0.00068174157,0.006666291,0.0010336075,0.00006628073,0.0001901959,0.95213616],"genre_scores_gemma":[0.8171443,0.0042340434,0.00018899988,0.00014701685,0.00057957333,0.00032545775,0.0075934213,0.00010998564,0.16967723],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984566,0.00029577594,0.0004497521,0.00030685673,0.00020204987,0.00028897618],"domain_scores_gemma":[0.99852943,0.00006765512,0.000318635,0.00044553573,0.0006275482,0.000011195847],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0017162026,0.00023081744,0.000360364,0.00019344465,0.0001399349,0.00001726424,0.00019315323,0.0008766661,0.010358504],"category_scores_gemma":[0.0006021251,0.00021320324,0.00015992389,0.0000916952,0.000090138084,0.00007519506,0.000055775086,0.0005100152,0.0038736514],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017186742,0.00008212409,0.000033039323,0.00012461956,0.00045084927,0.00000932048,0.00027960836,0.000018803792,0.60846347,0.0005959199,0.24145022,0.14832015],"study_design_scores_gemma":[0.00092740677,0.000086290165,0.0008938554,0.00020450976,0.00024424316,0.0001823222,0.000025658304,0.000003932046,0.09689649,0.002301207,0.8979649,0.00026918275],"about_ca_topic_score_codex":0.000074167365,"about_ca_topic_score_gemma":0.000022549331,"teacher_disagreement_score":0.78863204,"about_ca_system_score_codex":0.0006353052,"about_ca_system_score_gemma":0.0029989467,"threshold_uncertainty_score":0.9969019},"labels":[],"label_agreement":null},{"id":"W6929153191","doi":"10.48336/g3pd-j889","title":"3D modelling and inversion of airborne gravity gradiometry and aeromagnetic data from Budgell Harbour, North-Central Newfoundland","year":2022,"lang":"en","type":"article","venue":"Memorial University Research Repository (Memorial University)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Inversion (geology); Mineral exploration; Intrusion; Tectonics; Submarine pipeline; Parameterized complexity","score_opus":0.03237059401248935,"score_gpt":0.23358424786892515,"score_spread":0.2012136538564358,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929153191","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99473894,0.0005397581,0.00025977817,0.000095203344,0.0026454134,0.00039429762,0.0002298961,0.000048514594,0.00104818],"genre_scores_gemma":[0.9943112,0.00046895244,0.00014959899,0.0000041923645,0.0003421788,2.1773612e-7,0.0005283488,0.000015414475,0.004179864],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99615765,0.0019899562,0.00024938202,0.000744449,0.00031066823,0.0005479256],"domain_scores_gemma":[0.99820536,0.0005315532,0.00019369565,0.00073331833,0.00020697263,0.00012910215],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.00076215644,0.00021781906,0.0004177166,0.000964508,0.0019062223,0.000048245918,0.0010470805,0.00022011917,0.00012918776],"category_scores_gemma":[0.00008783018,0.00027157247,0.00007676883,0.001005056,0.00079059944,0.0006924848,0.0024806117,0.00089661544,0.000010639121],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.07269547,0.0016109342,0.057933606,0.00034689123,0.0021737793,0.003251941,0.006812678,0.0030306093,0.82752585,0.0040849317,0.014153579,0.0063797073],"study_design_scores_gemma":[0.045772735,0.006096841,0.05112799,0.00020834152,0.0017572136,0.00033157525,0.017404677,0.018652437,0.044204976,0.00058263325,0.81133175,0.0025288337],"about_ca_topic_score_codex":0.013730096,"about_ca_topic_score_gemma":0.0004187037,"teacher_disagreement_score":0.79717815,"about_ca_system_score_codex":0.00045777063,"about_ca_system_score_gemma":0.00043821865,"threshold_uncertainty_score":0.99997365},"labels":[],"label_agreement":null},{"id":"W6929489723","doi":"10.5167/uzh-264617","title":"Large ischemic core defined by visually assessed ASPECTS predicts functional outcomes comparably accurate to automated CT perfusion in the 6–24 h window","year":2024,"lang":"en","type":"article","venue":"Zurich Open Repository and Archive (University of Zurich)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Receiver operating characteristic; Logistic regression; Perfusion scanning; Stroke (engine); Core (optical fiber); Occlusion; Modified Rankin Scale; Perfusion; Stroke recovery; Correlation; Area under the curve","score_opus":0.016016936728453283,"score_gpt":0.24721313657125843,"score_spread":0.23119619984280515,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929489723","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9908142,0.0006989733,0.000883941,0.00066839706,0.0003352656,0.0005381528,0.0000639972,0.00010861993,0.005888451],"genre_scores_gemma":[0.99541324,0.000053079362,0.00013256544,0.00011753391,0.000011540204,0.0000033110139,0.00034307988,0.000010306841,0.003915359],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.998398,0.0006923279,0.0002171344,0.0003486647,0.00008870901,0.00025517313],"domain_scores_gemma":[0.99875784,0.00082917255,0.00010991465,0.00022176105,0.000048843038,0.00003244814],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000715539,0.00018045648,0.0003057628,0.00019811762,0.0005290018,0.00008161834,0.0004575644,0.00008232431,0.00007118078],"category_scores_gemma":[0.00005036572,0.00015136837,0.000077179924,0.00030264215,0.000119303804,0.0004110343,0.00036602048,0.00030093026,0.00007421373],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0009670556,0.00036510875,0.007593555,0.00006885821,0.00021799232,0.0001910051,0.0052068327,0.00003285399,0.84563977,0.002028443,0.13744414,0.00024438632],"study_design_scores_gemma":[0.005614759,0.00092559104,0.7715522,0.00053022354,0.00028790915,0.0005745547,0.01024206,0.0030027726,0.038662028,0.0003171471,0.16757175,0.00071899506],"about_ca_topic_score_codex":0.0003253775,"about_ca_topic_score_gemma":0.00009504597,"teacher_disagreement_score":0.80697775,"about_ca_system_score_codex":0.000035402743,"about_ca_system_score_gemma":0.00013614254,"threshold_uncertainty_score":0.6172623},"labels":[],"label_agreement":null},{"id":"W6929515241","doi":"10.5061/dryad.s1rn8pk9q","title":"Data for: Occupancy–detection models with museum specimen data: Promise and pitfalls","year":2022,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University; University of British Columbia","funders":"Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung","keywords":"Nucleofection; TSG101; Proteogenomics; Gestational period; Hyporeflexia; Articular cartilage damage","score_opus":0.0733514902948496,"score_gpt":0.2652398723325154,"score_spread":0.19188838203766578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929515241","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00026712116,0.00074692385,0.0013240436,0.0002171354,0.00025621272,0.0012913822,0.9948826,0.00027461015,0.0007399626],"genre_scores_gemma":[0.0005908066,0.0009908137,0.000057363344,0.00005176163,0.00009819738,4.943419e-7,0.9968217,0.0006503473,0.0007384912],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99743205,0.0006590172,0.00037348378,0.0009693518,0.00014536252,0.00042072244],"domain_scores_gemma":[0.9967082,0.000069320646,0.0002950591,0.002629482,0.00025112779,0.000046774298],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012865383,0.00027772898,0.00032045034,0.00032843917,0.002564032,0.00040662923,0.0028100787,0.00022569181,0.022802908],"category_scores_gemma":[0.0004574264,0.00026770166,0.000028934322,0.00026213532,0.00021452793,0.00079819566,0.005827337,0.0006609303,0.0011809376],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.001119677,0.000107783395,3.5989075e-8,0.00015714782,0.00025579036,0.000006996182,0.000103229046,0.000010327298,0.00403115,0.000065973916,0.98164594,0.012495944],"study_design_scores_gemma":[0.0013226658,0.00061040407,0.000009540834,0.00004086735,0.00014567711,0.00029310407,0.00015932723,0.00014968004,0.00039706434,0.00003274663,0.9965188,0.0003201516],"about_ca_topic_score_codex":0.000069562826,"about_ca_topic_score_gemma":0.000007138088,"teacher_disagreement_score":0.02162197,"about_ca_system_score_codex":0.00011880191,"about_ca_system_score_gemma":0.000021272619,"threshold_uncertainty_score":0.9999775},"labels":[],"label_agreement":null},{"id":"W6929538470","doi":"10.5061/dryad.4xgxd2560","title":"Data from: Interspecific hybrids show a reduced adaptive potential under DNA damaging conditions","year":2021,"lang":"en","type":"dataset","venue":"DRYAD","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval","funders":"Fonds de recherche du Québec – Nature et technologies; Fonds de Recherche du Québec - Santé","keywords":"Hybrid; Stimulus (psychology); Genome; Adaptation (eye); Yeast; Adaptive evolution; Interspecific hybridization","score_opus":0.043004745545544946,"score_gpt":0.28919733512119117,"score_spread":0.24619258957564621,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929538470","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.004946295,0.0035424158,0.00026470853,0.00047077367,0.0034552768,0.00023510186,0.98682636,0.00006226334,0.00019677934],"genre_scores_gemma":[0.007815824,0.00050461205,0.000032052263,0.00022563,0.00028784332,0.000026139705,0.9891647,0.0000287796,0.0019143895],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9976522,0.00058860105,0.00049460545,0.0007891703,0.000075420015,0.00040004018],"domain_scores_gemma":[0.9973034,0.00020429815,0.0002876375,0.0020482263,0.000129077,0.000027325576],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00023096883,0.00037608764,0.00052302174,0.0002565019,0.0002993009,0.00009957546,0.001086714,0.0005492076,0.01039965],"category_scores_gemma":[0.00012947252,0.00038999462,0.0001473912,0.00015542688,0.00027096152,0.00030921164,0.0008775467,0.0009539111,0.004552112],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001859497,0.00009248459,1.895288e-7,0.0000108060485,0.0007114366,0.00010140757,0.00004205242,0.0000028259064,0.1058043,0.00004205999,0.8927629,0.00024357947],"study_design_scores_gemma":[0.00085272896,0.000053526568,0.00011207828,0.00023263792,0.0003885859,0.00011385609,0.0010024204,0.000016626549,0.012771983,0.00012897376,0.9838931,0.00043345694],"about_ca_topic_score_codex":0.00042191494,"about_ca_topic_score_gemma":0.00012524778,"teacher_disagreement_score":0.093032315,"about_ca_system_score_codex":0.00011205272,"about_ca_system_score_gemma":0.0003488465,"threshold_uncertainty_score":0.9998552},"labels":[],"label_agreement":null},{"id":"W6929580762","doi":"10.5066/f7jq107b","title":"iTOUGH2-EOS7C model used to analyze multiphase flow and underpressured shale at the Bruce Nuclear Site, Ontario, Canada","year":2017,"lang":"en","type":"dataset","venue":"USGS DOI Tool Production Environment","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Paleozoic; Aquifer; Methane; Oil shale; Multiphase flow; Flow (mathematics); Structural basin","score_opus":0.011334396972755467,"score_gpt":0.21351204046385544,"score_spread":0.20217764349109998,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929580762","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.42582056,0.002073928,0.000086860615,0.0048195994,0.0029739316,0.0025938312,0.5615117,0.000056867146,0.000062694315],"genre_scores_gemma":[0.014252008,0.0006182774,0.0001799182,0.00051213487,0.00025050703,0.00014830953,0.91592264,0.0000646502,0.06805156],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99789333,0.0002293341,0.00044628532,0.00083809596,0.0001718439,0.00042111482],"domain_scores_gemma":[0.99778956,0.000054673554,0.0003658123,0.0017182243,0.00002398558,0.00004777053],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003852203,0.00043840625,0.00043578653,0.00009666333,0.0010857726,0.000066187036,0.00041031747,0.00039901654,0.0027955666],"category_scores_gemma":[0.00012768683,0.00035946732,0.00009366503,0.000034534314,0.00023628362,0.00017690234,0.0004575711,0.00060179643,0.0010199656],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00045977934,0.00008256918,0.000028603254,0.00002820079,0.00027175414,0.000008076317,0.00051801454,0.012349544,0.028430836,7.27921e-7,0.95701414,0.00080772134],"study_design_scores_gemma":[0.00062779617,0.00007329129,0.0011024178,0.00003401818,0.00025656712,0.000055698623,0.00004722972,0.00015737665,0.004300086,0.0000035341775,0.9929137,0.0004282362],"about_ca_topic_score_codex":0.4184156,"about_ca_topic_score_gemma":0.68849105,"teacher_disagreement_score":0.41156855,"about_ca_system_score_codex":0.001037192,"about_ca_system_score_gemma":0.00030174336,"threshold_uncertainty_score":0.99988574},"labels":[],"label_agreement":null},{"id":"W6929581921","doi":"10.5121/ijmvsc.2025.16201","title":"THE NATURE OF THE RISK: PERCEPTIONS ACROSS G7 COUNTRIES REGARDING RISKS FROM INFORMATION TECHNOLOGY VERSUS THOSEARISING FROM CLIMATE CHANGE, 2022-2025","year":2025,"lang":"en","type":"article","venue":"International Journal of Managing Value and Supply Chains","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Climate change; Perception; Information technology; Risk perception; Natural (archaeology); Process (computing); Risk management","score_opus":0.01041760810344217,"score_gpt":0.29608370238043397,"score_spread":0.2856660942769918,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929581921","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97537196,0.0070903003,0.0008447272,0.011865565,0.0042367894,0.00012267008,0.0001937274,0.0000144086835,0.00025987433],"genre_scores_gemma":[0.98958504,0.009874023,0.000072020855,0.00021471607,0.00011313167,0.0000053003077,0.00003955085,0.000004643046,0.00009159668],"study_design_codex":"design_other","study_design_gemma":"observational","domain_scores_codex":[0.99893695,0.00019426813,0.000473524,0.00009168308,0.00012641863,0.00017714217],"domain_scores_gemma":[0.9983419,0.0005670806,0.00054701534,0.00018413943,0.00035174977,0.000008120863],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006639505,0.00011198568,0.00017926816,0.00022837117,0.00059116713,0.00010777485,0.00052128825,0.00023191859,0.000019805617],"category_scores_gemma":[0.00040976517,0.000072540584,0.00012334659,0.00015178288,0.00023676312,0.00043654838,0.0002716808,0.0007164652,0.0000077461],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.009885466,0.00014641191,0.37291616,0.000062019724,0.007022713,0.000021483609,0.034507014,0.00073767686,0.028827071,0.10970933,0.007155937,0.42900872],"study_design_scores_gemma":[0.007549738,0.00018012364,0.76459473,0.0015671407,0.0005037342,0.000055864544,0.03538276,0.0014308783,0.027464809,0.014405102,0.14651933,0.0003457671],"about_ca_topic_score_codex":0.00051086175,"about_ca_topic_score_gemma":0.000104226565,"teacher_disagreement_score":0.42866296,"about_ca_system_score_codex":0.00008112454,"about_ca_system_score_gemma":0.000061873114,"threshold_uncertainty_score":0.45468393},"labels":[],"label_agreement":null},{"id":"W6929639321","doi":"10.5061/dryad.7sqv9s4pk","title":"Contrasting the suitability of shade coffee agriculture and native forest as overwinter habitat for Canada Warbler (Cardellina canadensis) in the Colombian Andes.","year":2020,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Environment and Climate Change Canada; University of Saskatchewan","funders":"","keywords":"Exclosure; Vegetation (pathology); Population; Rainforest; Overgrazing","score_opus":0.0162416024055917,"score_gpt":0.21800604999126758,"score_spread":0.20176444758567588,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929639321","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.028240763,0.0012405324,0.00005254541,0.007012298,0.00035596153,0.0032768783,0.95790076,0.00006808952,0.0018521458],"genre_scores_gemma":[0.28564256,0.00015392924,0.000002366264,0.000575605,0.00005301925,7.390445e-7,0.71326166,0.00017000937,0.00014009932],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9979542,0.0009234265,0.00036950686,0.0003150892,0.00012510277,0.00031271353],"domain_scores_gemma":[0.9984887,0.0004998837,0.00023656046,0.00031072414,0.00043408517,0.000030000105],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00087259733,0.00019163813,0.00028720178,0.00007314301,0.0010639755,0.0001321327,0.00079022156,0.00018103608,0.000796792],"category_scores_gemma":[0.002482885,0.00012598663,0.000056576915,0.00022990946,0.00029809654,0.00007797006,0.00039162274,0.00057928375,0.00010049733],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00035555018,0.000031509768,0.0000036197027,0.000105715364,0.00012883544,0.00000626811,0.00087205187,0.000008956802,0.0013366882,0.00012246754,0.9959385,0.0010898685],"study_design_scores_gemma":[0.0006969823,0.00026054593,0.002135707,0.0000762443,0.000060632894,0.0000666802,0.00153868,0.000011414741,0.0007963109,0.000036962214,0.99417937,0.00014047865],"about_ca_topic_score_codex":0.023670666,"about_ca_topic_score_gemma":0.031766597,"teacher_disagreement_score":0.2574018,"about_ca_system_score_codex":0.00017986663,"about_ca_system_score_gemma":0.000059322836,"threshold_uncertainty_score":0.9859011},"labels":[],"label_agreement":null},{"id":"W6929676590","doi":"10.48550/arxiv.astro-ph/0401134","title":"An RXTE Archival Search for Coherent X-ray Pulsations in LMXB 4U 1820-30","year":2004,"lang":"en","type":"preprint","venue":"arXiv (Cornell University)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Binary number; Globular cluster; X-ray binary; Millisecond; Millisecond pulsar; Amplitude; Low Mass; Phase (matter)","score_opus":0.06437509782320835,"score_gpt":0.22147847008281224,"score_spread":0.15710337225960389,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929676590","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.969097,0.00012540731,0.02769387,0.00010776235,0.00050982845,0.0010028457,0.00006679756,0.000092691385,0.0013037553],"genre_scores_gemma":[0.9955141,0.00017496289,0.00008351952,0.000031724736,0.000044679226,0.000011257304,0.0010635322,0.000027475491,0.0030487413],"study_design_codex":"simulation_or_modeling","study_design_gemma":"observational","domain_scores_codex":[0.9980264,0.00046520328,0.0003102765,0.000692564,0.000024782812,0.00048078896],"domain_scores_gemma":[0.9987941,0.00017752325,0.00015773783,0.0006927505,0.00013520735,0.000042693995],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.00042011894,0.00028791162,0.00037567326,0.0004928901,0.00022994012,0.000033172408,0.00060181087,0.00048021536,0.00038154892],"category_scores_gemma":[0.000039274222,0.00033270597,0.0002052653,0.00020665747,0.00021039872,0.00017833801,0.0002873562,0.0008070645,0.00049723394],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003115406,0.0011953029,0.0065610018,0.00038346287,0.0007374093,0.00013641836,0.0031694733,0.72314394,0.13075069,0.12556475,0.00032330418,0.0049188347],"study_design_scores_gemma":[0.046622984,0.0046769152,0.40310347,0.002806925,0.0018305469,0.00009191159,0.007086374,0.08367688,0.24886914,0.15053725,0.042660464,0.00803715],"about_ca_topic_score_codex":0.00046376954,"about_ca_topic_score_gemma":0.00010991104,"teacher_disagreement_score":0.63946706,"about_ca_system_score_codex":0.0003478255,"about_ca_system_score_gemma":0.0005113717,"threshold_uncertainty_score":0.9999125},"labels":[],"label_agreement":null},{"id":"W6929684589","doi":"10.5061/dryad.bg79cnp9v","title":"Mitochondrial DNA assay of 63 Chinook-Coho salmon hybrids","year":2021,"lang":"en","type":"dataset","venue":"Open MIND","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Fisheries and Oceans Canada","funders":"","keywords":"Mitochondrial DNA; Hybrid; Offspring; Polymerase chain reaction; DNA; Gene","score_opus":0.019351696923781924,"score_gpt":0.28217000441853246,"score_spread":0.26281830749475055,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929684589","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.013885587,0.0020184573,0.000006200358,0.000085545114,0.0035005684,0.0006367764,0.97759193,0.0000019905415,0.0022729319],"genre_scores_gemma":[0.00023183771,0.00026460693,0.00013672917,0.000026367803,0.00019907355,0.00002508712,0.9888431,0.000017645976,0.010255568],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.997796,0.00067612954,0.00067307363,0.0004735862,0.0000684107,0.00031278518],"domain_scores_gemma":[0.9982241,0.00021481753,0.0004948444,0.00094003516,0.000106780855,0.000019428348],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00049316423,0.0003188494,0.0007567006,0.00017014059,0.00012742104,0.00007885768,0.0010025665,0.0007839984,0.01905886],"category_scores_gemma":[0.00032074476,0.00029678116,0.000194932,0.00012755979,0.00014631663,0.00017856191,0.0005920784,0.0005825254,0.0050374013],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044630084,0.00010666926,0.0000017555768,0.000025133253,0.00030471693,0.000030485919,0.00005092495,4.3348433e-7,0.18420282,0.0000015045042,0.8030037,0.011825525],"study_design_scores_gemma":[0.00084277306,0.00010609252,0.000035457,0.00014461453,0.00013732894,0.00006195404,0.00003828864,1.5850215e-7,0.2982098,0.0000043262844,0.70020205,0.00021718278],"about_ca_topic_score_codex":0.0003508103,"about_ca_topic_score_gemma":0.0001049455,"teacher_disagreement_score":0.11400695,"about_ca_system_score_codex":0.00004150718,"about_ca_system_score_gemma":0.00045247818,"threshold_uncertainty_score":0.99994844},"labels":[],"label_agreement":null},{"id":"W6929700771","doi":"10.5061/dryad.q28b2","title":"Data from: Are flies kind to kin? The role of intra- and inter-sexual relatedness in mediating reproductive conflict","year":2015,"lang":"en","type":"dataset","venue":"Data Archiving and Networked Services (DANS)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Sexual conflict; Kinship; Courtship; Context (archaeology); Kin selection; Inclusive fitness; Kin recognition; Set (abstract data type)","score_opus":0.031196914260139017,"score_gpt":0.275066379742481,"score_spread":0.24386946548234198,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929700771","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2692464,0.009959408,0.000007826402,0.00015417594,0.00043860098,0.00034575714,0.7198011,0.000019470437,0.000027202941],"genre_scores_gemma":[0.028917432,0.001486033,0.00003743557,0.00009334115,0.00024457515,0.000016879614,0.9691436,0.000022992906,0.000037663776],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996844,0.00093967386,0.0006888742,0.0010582474,0.00009210071,0.00037713457],"domain_scores_gemma":[0.995332,0.0009211203,0.00056938414,0.0030784253,0.000057217694,0.00004182567],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0018662434,0.00036902027,0.0006595944,0.00018550512,0.00019716547,0.00006562503,0.0025060617,0.0003249645,0.0000237501],"category_scores_gemma":[0.0003300619,0.0002748378,0.000016285518,0.00020936174,0.00029066,0.0003988812,0.004507163,0.00089452113,0.00003434749],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0035037575,0.0002187094,0.0073539377,0.00072312367,0.0015971627,0.000036599402,0.040613,0.00009905555,0.02220595,0.000010846866,0.8793299,0.04430794],"study_design_scores_gemma":[0.0007177961,0.0001332993,0.009120078,0.001203989,0.00026424,0.00003969532,0.013137683,0.0011818175,0.0005079379,0.00009294707,0.9731605,0.0004400263],"about_ca_topic_score_codex":0.008987631,"about_ca_topic_score_gemma":0.012730487,"teacher_disagreement_score":0.2493425,"about_ca_system_score_codex":0.000018865296,"about_ca_system_score_gemma":0.00007236058,"threshold_uncertainty_score":0.9999704},"labels":[],"label_agreement":null},{"id":"W6929767758","doi":"10.5061/dryad.9s6f82f","title":"Data from: Systematic deviations from linear size spectra of lake fish communities are correlated with predator-prey interactions and lake-use intensity","year":2018,"lang":"en","type":"dataset","venue":"Data Archiving and Networked Services (DANS)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Concordia University","funders":"","keywords":"Abundance (ecology); Logarithm; Sample size determination; Range (aeronautics); Fishing; Linearity; Community structure; Linear regression; Fish <Actinopterygii>","score_opus":0.030414919230311283,"score_gpt":0.25088900104761336,"score_spread":0.22047408181730208,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929767758","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.22393751,0.00067345944,0.00011684085,0.000031988235,0.00041439725,0.0004074409,0.77435565,0.000055121036,0.000007613394],"genre_scores_gemma":[0.018460194,0.0024240625,0.0002182622,0.00013234773,0.0001350203,0.000017293172,0.97846204,0.000031533833,0.00011925788],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99707615,0.0010776045,0.0008131437,0.00061937066,0.0000934531,0.00032027744],"domain_scores_gemma":[0.991481,0.0035695983,0.0010146296,0.003744395,0.0001430366,0.000047346886],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005045767,0.00046402204,0.0010242459,0.00014225442,0.0005357886,0.00015240372,0.0019935302,0.00032506292,0.00025324567],"category_scores_gemma":[0.0001997779,0.00037730552,0.000038814083,0.00015715657,0.00043595402,0.0009025791,0.0025239715,0.00093919394,0.000046621524],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022986457,0.00026528485,0.009965978,0.0061507323,0.004808608,0.000019519732,0.004185121,0.00003124863,0.00055023003,0.0000023826124,0.97166455,0.000057679783],"study_design_scores_gemma":[0.0034434595,0.0004867709,0.104615636,0.073141955,0.007308375,0.00030862997,0.010868007,0.024798274,0.00021982734,0.00007565397,0.7727773,0.0019560966],"about_ca_topic_score_codex":0.0073788315,"about_ca_topic_score_gemma":0.5027223,"teacher_disagreement_score":0.4953435,"about_ca_system_score_codex":0.0000126879195,"about_ca_system_score_gemma":0.00006836856,"threshold_uncertainty_score":0.9998679},"labels":[],"label_agreement":null},{"id":"W6929774383","doi":"10.5167/uzh-126444","title":"Nontarget effects of ivermectin residues on earthworms and springtails dwelling beneath dung of treated cattle in four countries","year":2016,"lang":"en","type":"article","venue":"Zurich Open Repository and Archive (University of Zurich)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Ivermectin; Earthworm; Invertebrate; Oligochaeta (plant); Livestock","score_opus":0.005141933184763749,"score_gpt":0.18018500022701445,"score_spread":0.1750430670422507,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929774383","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99769217,0.00052963325,0.00021277067,0.000056547848,0.00005486849,0.00027796158,0.000011776407,0.000007862671,0.001156428],"genre_scores_gemma":[0.99771905,0.00051293726,0.00024127761,0.00000419691,0.0000046421064,5.58102e-7,0.0000061614137,0.0000055357505,0.0015056323],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989892,0.00044828767,0.00018050183,0.0002014809,0.000038288836,0.0001422288],"domain_scores_gemma":[0.99861103,0.00094017276,0.00022367078,0.00015747001,0.00004965608,0.000018016906],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00034032942,0.00011014195,0.0003271829,0.0001574551,0.00016510005,0.0000064707588,0.0001737542,0.000089067464,0.000016351669],"category_scores_gemma":[0.000045791054,0.00009239661,0.00004032052,0.00008029827,0.00028771482,0.00022460037,0.00016754259,0.0000878415,0.000003828158],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0022595224,0.000082914914,0.1028856,0.00014228947,0.00014187377,0.00003664512,0.002852057,0.000006705769,0.8891319,0.0009195449,0.00011037225,0.0014305895],"study_design_scores_gemma":[0.0015722293,0.00049559027,0.4625504,0.00041921763,0.000038691043,0.000015319276,0.00034350972,0.0000030270935,0.5338035,0.00013483527,0.00053042034,0.00009322067],"about_ca_topic_score_codex":0.0012591017,"about_ca_topic_score_gemma":0.00019846912,"teacher_disagreement_score":0.3596648,"about_ca_system_score_codex":0.000015713747,"about_ca_system_score_gemma":0.000039386465,"threshold_uncertainty_score":0.37678242},"labels":[],"label_agreement":null},{"id":"W6929778349","doi":"10.48620/87969","title":"AI-Enhanced Speech Recognition in Triage.","year":2025,"lang":"en","type":"article","venue":"Open Access CRIS of the University of Bern","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Triage; Documentation; Consistency (knowledge bases); German; Process (computing); Workaround","score_opus":0.025397938414580736,"score_gpt":0.30644884036465236,"score_spread":0.28105090195007165,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929778349","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9773088,0.00011160829,0.00018546871,0.0017493151,0.00020368551,0.0002934997,0.000009067175,0.000004862379,0.020133661],"genre_scores_gemma":[0.9887283,0.00009850945,0.000048537953,0.00008026468,0.0000013584674,2.672867e-7,0.000019807827,0.0000018272066,0.011021156],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99946743,0.00019824147,0.00013864905,0.00009795163,0.000018832561,0.00007886651],"domain_scores_gemma":[0.9994984,0.000066557586,0.00014290289,0.00021042688,0.00007891746,0.000002767758],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00024389749,0.000049919337,0.00016821588,0.000124024,0.00009514208,0.000014826476,0.0011348611,0.000091796835,0.00063306553],"category_scores_gemma":[0.00007023543,0.00004609622,0.000058355447,0.00023923835,0.000104828294,0.00055461214,0.0007387742,0.000115754614,0.000043893],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004162122,0.00026376967,0.0057020383,0.00009060448,0.00022395032,0.0000027183685,0.0011670713,0.0000267952,0.7674712,0.00040870288,0.023138266,0.19734278],"study_design_scores_gemma":[0.0019117085,0.000022353828,0.034657706,0.00018398277,0.000038808543,6.567719e-7,0.00064695766,0.0000039863503,0.9513037,0.0009594644,0.010214693,0.000055932334],"about_ca_topic_score_codex":0.0027313323,"about_ca_topic_score_gemma":0.0004135962,"teacher_disagreement_score":0.19728686,"about_ca_system_score_codex":0.00003010926,"about_ca_system_score_gemma":0.000071962524,"threshold_uncertainty_score":0.6931624},"labels":[],"label_agreement":null},{"id":"W6929803982","doi":"10.5167/uzh-48939","title":"Role of the environment in the development of canine atopic dermatitis in Labrador and Golden Retrievers","year":2011,"lang":"en","type":"article","venue":"Zurich Open Repository and Archive (University of Zurich)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Atopic dermatitis; Disease; Logistic regression; Risk factor; Epidemiology; Multivariate analysis","score_opus":0.008034059400411622,"score_gpt":0.16452828986393317,"score_spread":0.15649423046352154,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929803982","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9965288,0.00038820447,0.000037251968,0.000058083835,0.000019739502,0.00023062178,0.0000037819734,0.0000012427381,0.002732252],"genre_scores_gemma":[0.9989131,0.00008816938,0.00060427614,0.000008816368,9.206943e-7,6.477784e-7,0.0000045284346,0.0000019712948,0.0003775818],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99914217,0.00047893543,0.00016512479,0.00010041633,0.000031972468,0.00008136005],"domain_scores_gemma":[0.9995637,0.0001235858,0.00015555481,0.00014109733,0.000009179996,0.000006861144],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00036447452,0.00005976492,0.00014907686,0.000064168504,0.00012165829,0.0000025897584,0.0002957176,0.00004792687,0.000029847986],"category_scores_gemma":[0.00000931452,0.000046589776,0.00002051233,0.000079505124,0.00021902319,0.00010668099,0.00027607556,0.00009809509,0.0000013614408],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004095776,0.00030501737,0.25317344,0.00010608827,0.0001625701,0.000015393905,0.21173994,0.0000059540635,0.52084816,0.0019586934,0.00025276365,0.011022428],"study_design_scores_gemma":[0.00063474034,0.00006131301,0.91916585,0.000055909884,0.000016251139,0.00001279543,0.009780355,0.000004382557,0.068273075,0.00018493737,0.0017582988,0.00005211403],"about_ca_topic_score_codex":0.001529327,"about_ca_topic_score_gemma":0.00045169558,"teacher_disagreement_score":0.6659924,"about_ca_system_score_codex":0.000013303071,"about_ca_system_score_gemma":0.000046172958,"threshold_uncertainty_score":0.23118952},"labels":[],"label_agreement":null},{"id":"W6929839992","doi":"10.5281/zenodo.10002201","title":"Simulation-Based Inference for the Synchronization of Business Cycles","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Synchronization (alternating current); Inference; Business cycle; Scheme (mathematics)","score_opus":0.03663699267674085,"score_gpt":0.2708478506202792,"score_spread":0.23421085794353835,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929839992","genre_codex":"methods","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.16510017,0.0006791122,0.8200874,0.0041994606,0.0007152037,0.0024784843,0.00036240055,0.0018997298,0.0044780476],"genre_scores_gemma":[0.9963284,0.00004387951,0.00003323846,0.00004032262,0.000029012019,1.9511789e-7,0.0029387102,0.0002444617,0.00034178168],"study_design_codex":"simulation_or_modeling","study_design_gemma":"not_applicable","domain_scores_codex":[0.9991262,0.00022075792,0.00022913647,0.00016222283,0.00006437865,0.0001972924],"domain_scores_gemma":[0.99796134,0.0007857342,0.00012573732,0.00027553592,0.0008400388,0.000011629462],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005961924,0.00008199404,0.00010287056,0.00019318305,0.001420278,0.000092144975,0.0004318878,0.00007595434,0.0020386337],"category_scores_gemma":[0.0037921448,0.00006827259,0.00004020348,0.0007056256,0.00016231174,0.00012678326,0.0001847171,0.00008955423,0.0023366308],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00079064607,0.00015692682,0.000045041517,0.0002923875,0.00020252011,0.0000013876675,0.0018058994,0.40170744,0.2119588,0.007683149,0.03850769,0.3368481],"study_design_scores_gemma":[0.0011913342,0.00017285142,0.006020565,0.0000583735,0.000037781156,0.0000037046789,0.00033441346,0.08401774,0.023320826,0.00018927232,0.88449186,0.00016126111],"about_ca_topic_score_codex":0.0000114659115,"about_ca_topic_score_gemma":2.2882479e-7,"teacher_disagreement_score":0.8459842,"about_ca_system_score_codex":0.00003681829,"about_ca_system_score_gemma":0.000010711001,"threshold_uncertainty_score":0.9998797},"labels":[],"label_agreement":null},{"id":"W6929902417","doi":"10.5281/zenodo.11610782","title":"FIGURE 8. Hymetrochota austini n in Fourteen new species of demosponges (Porifera) from three coastal fjords in southern British Columbia, Canada","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Precision Nanosystems (Canada)","funders":"","keywords":"Holotype; Fjord; Paratype; Section (typography); Skeleton (computer programming)","score_opus":0.01602696742356841,"score_gpt":0.19891543180246546,"score_spread":0.18288846437889705,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929902417","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.25363114,0.013644596,0.0001825927,0.0006721001,0.0014775543,0.001633321,0.005753363,0.0007909235,0.7222144],"genre_scores_gemma":[0.07632213,0.00039739933,0.000035938323,0.000034873217,0.00017047764,1.2101647e-7,0.007173081,0.0027454058,0.91312057],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99829435,0.00033974336,0.00043020607,0.00043388797,0.00014077578,0.00036105595],"domain_scores_gemma":[0.9992498,0.000043404318,0.00019715496,0.00036548768,0.00010453791,0.00003957872],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003131436,0.00018024369,0.0003877182,0.000275123,0.00017701711,0.00027127456,0.00069365936,0.0003222686,0.107357696],"category_scores_gemma":[0.00043534688,0.00025936725,0.000057069527,0.0004314845,0.00014354548,0.000060298804,0.0005226258,0.00059041503,0.004716602],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00009673818,0.000047378326,0.0002696428,0.00010336122,0.00014349305,0.0000735429,0.00058545347,0.0000015863021,0.0050667273,0.000032168493,0.97136694,0.022212982],"study_design_scores_gemma":[0.0008713302,0.00010196996,0.006387615,0.0005462607,0.000026944874,0.000030966232,0.0007657145,0.0000032113276,0.0002123777,0.00008814459,0.99073064,0.00023480796],"about_ca_topic_score_codex":0.75977176,"about_ca_topic_score_gemma":0.78543574,"teacher_disagreement_score":0.19090617,"about_ca_system_score_codex":0.00017193408,"about_ca_system_score_gemma":0.00007240693,"threshold_uncertainty_score":0.9999859},"labels":[],"label_agreement":null},{"id":"W6929938617","doi":"10.5281/zenodo.11907172","title":"country number codes list pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Phone; Telephone number; Cape verde; Random digit dialing; Table (database); Code (set theory); Census","score_opus":0.01442349191896232,"score_gpt":0.2379077186175481,"score_spread":0.22348422669858575,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929938617","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0001190844,0.0021469384,0.00011844797,0.00023273683,0.0006468216,0.00033905366,0.00033109536,0.0013389081,0.9947269],"genre_scores_gemma":[0.0035107005,0.0005675468,0.0000194923,0.00009982863,0.00021797787,7.1104694e-8,0.009976647,0.005726894,0.97988087],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984435,0.00042266297,0.0002580228,0.0004206365,0.000094565374,0.0003606209],"domain_scores_gemma":[0.9991784,0.00001834796,0.00013938922,0.000478513,0.00015103874,0.000034326837],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00041993347,0.00023230877,0.00024935225,0.00028918425,0.00067333464,0.00039476439,0.00068384234,0.00039378728,0.47957873],"category_scores_gemma":[0.00022604488,0.00023103818,0.00007791,0.0002973112,0.0002617701,0.000079781086,0.00065288297,0.00053858495,0.6657158],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000063288484,0.000045365196,2.9178426e-7,0.00015471182,0.00022293604,0.000015295152,0.00022108639,2.1926873e-7,0.008536004,0.0030705347,0.976551,0.01111927],"study_design_scores_gemma":[0.00034643983,0.0000685693,0.0000084919175,0.00020708905,0.000052862822,0.00026175185,0.00011305252,0.0000025510788,0.0013403774,0.00007426175,0.9972798,0.00024474767],"about_ca_topic_score_codex":0.00007439165,"about_ca_topic_score_gemma":0.0000013650255,"teacher_disagreement_score":0.18613707,"about_ca_system_score_codex":0.00010088092,"about_ca_system_score_gemma":0.0000065178942,"threshold_uncertainty_score":0.94214636},"labels":[],"label_agreement":null},{"id":"W6929956614","doi":"10.5255/ukda-sn-4291-1","title":"Labour Force Survey Five-Quarter Longitudinal Dataset, March 1996 - May 1997","year":2004,"lang":"en","type":"dataset","venue":"UK Data Archive","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Quarter (Canadian coin); Sample (material); Unemployment; Survey data collection; Work (physics); Data collection; Longitudinal study; Longitudinal data","score_opus":0.031819995179950857,"score_gpt":0.29426171213875574,"score_spread":0.26244171695880486,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6929956614","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0003867873,0.001266687,0.00016767786,0.00021026967,0.0011511733,0.0006073514,0.9961283,0.000041058913,0.00004070167],"genre_scores_gemma":[0.00034014139,0.0010168124,0.000090036825,0.00026775015,0.00018370066,0.00004372955,0.99655825,0.00003842411,0.0014611827],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.995477,0.0013779518,0.0007997777,0.0012926898,0.00014405804,0.0009085005],"domain_scores_gemma":[0.9939248,0.00096937676,0.00044942668,0.0045275213,0.00006710791,0.00006176008],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013765265,0.0006596656,0.0007974526,0.0004231018,0.0004199908,0.00010001735,0.0032841177,0.0006346636,0.0034382113],"category_scores_gemma":[0.0005325495,0.0006057264,0.00011199352,0.00021046797,0.0004836706,0.00039764756,0.002438075,0.0015435239,0.010929068],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0010889191,0.00012728275,0.000103378006,0.00014845999,0.0006285376,0.0001018806,0.000043077307,0.0000028540194,0.00053179084,0.000055280194,0.9968979,0.00027064164],"study_design_scores_gemma":[0.0014150706,0.00024440687,0.013672945,0.0001801165,0.00019463089,0.00022221841,0.000028949084,0.0000018931038,0.0002491245,0.00013717366,0.9829959,0.00065756985],"about_ca_topic_score_codex":0.018007895,"about_ca_topic_score_gemma":0.011223111,"teacher_disagreement_score":0.013901996,"about_ca_system_score_codex":0.00008200728,"about_ca_system_score_gemma":0.0005338792,"threshold_uncertainty_score":0.9996394},"labels":[],"label_agreement":null},{"id":"W6930016787","doi":"10.5281/zenodo.10614389","title":"LENS: A LEO Satellite Network Measurement Dataset - 202312 - Part 4","year":2024,"lang":"en","type":"dataset","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Victoria","funders":"","keywords":"Satellite; Field (mathematics); Data collection; Data processing; Measure (data warehouse)","score_opus":0.05586195443001227,"score_gpt":0.24982748859508647,"score_spread":0.1939655341650742,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930016787","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000019075162,0.008379946,0.000028280238,0.00052658474,0.0013233228,0.00064282265,0.98422676,0.00047915475,0.004374047],"genre_scores_gemma":[0.000078137724,0.0049526347,0.0000074819545,0.00024938112,0.0004056364,2.3933453e-7,0.992442,0.00085164903,0.0010128526],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996534,0.0011851402,0.0005956712,0.00071239413,0.00026280803,0.000710003],"domain_scores_gemma":[0.9980683,0.000040733117,0.00023630608,0.0011634618,0.0004365677,0.00005465815],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.002158052,0.00037267004,0.00038154147,0.00032304716,0.0019265794,0.0006585419,0.0013916092,0.00042581203,0.0386999],"category_scores_gemma":[0.0005836869,0.00036751153,0.0001210921,0.0004916446,0.00024163087,0.0002526164,0.0017284196,0.0010553761,0.35277605],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0002275052,0.00008709416,3.7172477e-8,0.00022035041,0.00040216924,0.000035202447,0.00007252218,0.000007639444,0.0021814744,0.00012733985,0.98126715,0.015371492],"study_design_scores_gemma":[0.0004272298,0.00025871283,0.000008624082,0.00029609038,0.00016374548,0.00022162274,0.000055625616,0.0000016414726,0.0005043321,0.000042605156,0.9976497,0.00037002534],"about_ca_topic_score_codex":0.00003983615,"about_ca_topic_score_gemma":0.0000032241182,"teacher_disagreement_score":0.31407613,"about_ca_system_score_codex":0.00026551157,"about_ca_system_score_gemma":0.000020825417,"threshold_uncertainty_score":0.9998777},"labels":[],"label_agreement":null},{"id":"W6930181184","doi":"10.5281/zenodo.11714650","title":"les 10 rôles du manager pdf","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nucleofection; Paraphernalia; Work (physics); TSG101","score_opus":0.019837966945847465,"score_gpt":0.22767470348293514,"score_spread":0.20783673653708767,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930181184","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014064258,0.006675217,0.0006670872,0.0022146972,0.0009481769,0.00058035215,0.00014569172,0.00075867237,0.9866037],"genre_scores_gemma":[0.013697642,0.0015091097,0.000048266338,0.000098451455,0.00044975383,1.00047025e-7,0.0043675504,0.0046183392,0.9752108],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99690336,0.0012122652,0.00047400032,0.00067821314,0.00013165835,0.00060052634],"domain_scores_gemma":[0.9986376,0.000050981456,0.00021498758,0.00064295024,0.00038219662,0.0000712651],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007826265,0.00039203113,0.00036933,0.000630492,0.0018343782,0.000696993,0.0011327036,0.0006222428,0.83165634],"category_scores_gemma":[0.0005986744,0.0004039658,0.00018582227,0.00043160736,0.00056459877,0.0001698395,0.0014629589,0.0008033488,0.8288216],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019446554,0.00011098405,5.022411e-7,0.00041656365,0.0004686925,0.00005740209,0.00093954307,0.000004747305,0.019945802,0.022739215,0.7821425,0.17297955],"study_design_scores_gemma":[0.00053886825,0.00030189255,0.00014006451,0.00039549032,0.00013844013,0.00041074352,0.0003939158,0.000026741216,0.0024025592,0.00019867608,0.9946507,0.0004018872],"about_ca_topic_score_codex":0.00007286683,"about_ca_topic_score_gemma":0.000001564631,"teacher_disagreement_score":0.21250819,"about_ca_system_score_codex":0.00026734543,"about_ca_system_score_gemma":0.000007941037,"threshold_uncertainty_score":0.9998412},"labels":[],"label_agreement":null},{"id":"W6930201100","doi":"10.5281/zenodo.11943556","title":"us elle kennedy pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Paraphernalia; Limiting; Filter (signal processing); Pretext; Gloom","score_opus":0.015905694797444154,"score_gpt":0.22490405155595325,"score_spread":0.20899835675850909,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930201100","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00014974407,0.0041315625,0.00021755886,0.00027539342,0.0006721621,0.00039502836,0.00013996397,0.0014111799,0.9926074],"genre_scores_gemma":[0.0023885116,0.0006193755,0.000022833112,0.000079395286,0.00018723405,6.2786235e-8,0.005480681,0.0060948646,0.98512703],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984319,0.00042523694,0.00025076178,0.00043597494,0.00008098016,0.00037511488],"domain_scores_gemma":[0.9991764,0.000014076069,0.00013017638,0.0005158119,0.00012815274,0.000035425255],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003960093,0.0002240065,0.00023212846,0.0005057701,0.0006675977,0.00028262474,0.0007294063,0.0003662946,0.41252354],"category_scores_gemma":[0.00020626336,0.00022304757,0.00009565039,0.00029338527,0.00018707097,0.00006901249,0.0007796549,0.0005125855,0.700642],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000058251997,0.000044269473,9.268122e-8,0.00012093899,0.00019385986,0.000014211165,0.00021278365,6.852251e-7,0.015675303,0.0011714266,0.96286535,0.019642841],"study_design_scores_gemma":[0.00037467616,0.00014602896,0.000009988124,0.00016382757,0.00004525127,0.00016816826,0.0000815257,0.000003677281,0.0026978578,0.00007388507,0.99600226,0.00023283526],"about_ca_topic_score_codex":0.000037330476,"about_ca_topic_score_gemma":6.047359e-7,"teacher_disagreement_score":0.28811845,"about_ca_system_score_codex":0.00008678077,"about_ca_system_score_gemma":0.000005200977,"threshold_uncertainty_score":0.9095616},"labels":[],"label_agreement":null},{"id":"W6930204124","doi":"10.5281/zenodo.11711340","title":"Checkliste neurologie pdf","year":2024,"lang":"de","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Spinal cord injury; License; Test (biology)","score_opus":0.02398714791262571,"score_gpt":0.23903505749792825,"score_spread":0.21504790958530254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930204124","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008579793,0.012345297,0.00038604424,0.0019142567,0.0031890797,0.00084509,0.00021783917,0.0011893554,0.97905505],"genre_scores_gemma":[0.007516125,0.0043289475,0.00003695596,0.0003649269,0.00092305255,9.596692e-8,0.007681378,0.008237751,0.9709108],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99580866,0.0016909379,0.0006455501,0.0008455556,0.00018106536,0.00082824996],"domain_scores_gemma":[0.9980902,0.000051554878,0.0003646664,0.0009105461,0.0004783707,0.00010465814],"candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013019816,0.00047754694,0.0004795226,0.00081611413,0.002208229,0.0012285978,0.0017546519,0.00080152607,0.4586334],"category_scores_gemma":[0.0011445497,0.0004787499,0.00025197695,0.00055343757,0.00057887536,0.00018098041,0.0019327349,0.0017209704,0.87476933],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00033459105,0.00011619291,1.3757555e-7,0.00026886372,0.0005466722,0.00011802077,0.00075097015,0.0000033985038,0.027992921,0.001881666,0.91992915,0.04805741],"study_design_scores_gemma":[0.0007431096,0.00069651054,0.000025998515,0.00022404805,0.00019123216,0.0009133429,0.00020004337,0.000014029821,0.0021340314,0.00024503388,0.9941677,0.00044491724],"about_ca_topic_score_codex":0.000010578647,"about_ca_topic_score_gemma":1.8387686e-7,"teacher_disagreement_score":0.41613594,"about_ca_system_score_codex":0.00022151813,"about_ca_system_score_gemma":0.000017557597,"threshold_uncertainty_score":0.99980825},"labels":[],"label_agreement":null},{"id":"W6930247210","doi":"10.5281/zenodo.11472575","title":"✨༻꧂►►►(Special Discount Offer) Hurry Up, Shop Now!!◀◀◀✨༻꧂","year":2024,"lang":"pl","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Production (economics); Bottle; Work (physics)","score_opus":0.023218531701664456,"score_gpt":0.24639883415193006,"score_spread":0.2231803024502656,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930247210","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014929033,0.0041611884,0.00036655067,0.0015654229,0.00679112,0.0012842055,0.00082940934,0.0012572873,0.98225194],"genre_scores_gemma":[0.00815147,0.0027953065,0.000025548356,0.000179775,0.0052177967,2.5942126e-7,0.012390882,0.009904519,0.96133447],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9952794,0.001441243,0.00082701445,0.0011554114,0.00029795626,0.0009990064],"domain_scores_gemma":[0.99778765,0.000058527105,0.00038058055,0.0011281349,0.0005164324,0.00012866054],"candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011907143,0.0006543812,0.0006575706,0.00096645823,0.0022627232,0.0012267575,0.0018368522,0.00091764115,0.4094363],"category_scores_gemma":[0.0005690131,0.0006577887,0.00031358123,0.00070699584,0.0007371319,0.00029109023,0.0023064758,0.0015655725,0.5818586],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005671893,0.00016810169,3.770877e-7,0.00035464353,0.000572375,0.0000524661,0.0021318963,0.0000025295021,0.022871774,0.005959976,0.8983461,0.06897253],"study_design_scores_gemma":[0.0010778374,0.0004822315,0.000058412737,0.0005800657,0.0002003778,0.0003995277,0.00065825373,0.000018536124,0.002557695,0.0001558938,0.9931313,0.0006798929],"about_ca_topic_score_codex":0.000024349656,"about_ca_topic_score_gemma":0.0000021394526,"teacher_disagreement_score":0.17242229,"about_ca_system_score_codex":0.00041859827,"about_ca_system_score_gemma":0.00002738476,"threshold_uncertainty_score":0.99981004},"labels":[],"label_agreement":null},{"id":"W6930254697","doi":"10.5281/zenodo.11500980","title":"LOST LOVE SPELL CASTER +27786186013 Win court case spell New York, Washington, Miami, USA Mexico, Malaysia, Estonia, Croatia, Belgium, Austria, Germany, Australia, Sweden, New Zealand, Canada, Indonesia, Seychelles, Bahamas, Panama, Finland.","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Spell; Psychic; Caster; Recklessness; Anecdote","score_opus":0.03350155789639354,"score_gpt":0.24321001550551533,"score_spread":0.2097084576091218,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930254697","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.040444568,0.01121623,0.00068529305,0.006499454,0.0048251264,0.0042085177,0.0032542886,0.00076237647,0.92810416],"genre_scores_gemma":[0.009139025,0.0002979073,0.00008471805,0.00022907194,0.00090645236,2.9530383e-8,0.0041736625,0.0046267333,0.9805424],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9950662,0.0009130298,0.0010306151,0.0012859827,0.00040564893,0.0012985053],"domain_scores_gemma":[0.997286,0.000090593814,0.0006439776,0.0013182556,0.00028201885,0.00037915516],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007062237,0.0009198406,0.00089939625,0.00087081175,0.00033688004,0.00079713884,0.0015356779,0.001083459,0.3287524],"category_scores_gemma":[0.00018019263,0.00095490867,0.0002449723,0.00074066204,0.00030988175,0.00024343388,0.0010865033,0.0017601502,0.6164552],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00030416274,0.00009442475,0.00003527836,0.00019544,0.0006867407,0.0014813447,0.001219682,0.000038224054,0.0052022077,0.00010198751,0.98809266,0.0025478445],"study_design_scores_gemma":[0.0020627673,0.00027993534,0.00017192811,0.00041606984,0.00030126734,0.004830884,0.00035683898,0.0000245554,0.0034410215,0.000026718319,0.9871149,0.0009730994],"about_ca_topic_score_codex":0.24670167,"about_ca_topic_score_gemma":0.018853145,"teacher_disagreement_score":0.28770283,"about_ca_system_score_codex":0.0006919602,"about_ca_system_score_gemma":0.00025964985,"threshold_uncertainty_score":0.99929017},"labels":[],"label_agreement":null},{"id":"W6930296691","doi":"10.5281/zenodo.12140611","title":"Ul508a pdf deutsch","year":2024,"lang":"de","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"EMI; Sizing; Control (management); Blanket; Certification; Certificate; Path (computing)","score_opus":0.019662266723375836,"score_gpt":0.2360986876561721,"score_spread":0.21643642093279625,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930296691","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0007063945,0.0125593105,0.0005964298,0.0012204208,0.0019465308,0.0009443804,0.0003172406,0.0013759651,0.9803333],"genre_scores_gemma":[0.010770987,0.0032259813,0.000054208136,0.00021745132,0.0007522676,1.2619134e-7,0.013584964,0.009971062,0.961423],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9961022,0.0013587418,0.0006227356,0.00091360015,0.00019226653,0.0008104399],"domain_scores_gemma":[0.99815243,0.00004619846,0.00029446706,0.0009540583,0.0004489007,0.00010394203],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010975949,0.0004894858,0.00048488984,0.0008758352,0.0019535045,0.0009523849,0.001521268,0.00080319896,0.5654535],"category_scores_gemma":[0.00061816943,0.00050542346,0.00023111289,0.0006485621,0.00049527304,0.00017483636,0.0017836882,0.00129166,0.9104267],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026424677,0.00012978584,1.8111004e-7,0.00033978708,0.0007193202,0.000053256696,0.0010218434,0.000002049829,0.039055135,0.004345982,0.89885163,0.055216756],"study_design_scores_gemma":[0.0007558023,0.00041978483,0.000024979061,0.00042831412,0.00019757901,0.0003845916,0.00029766723,0.000014554185,0.00470679,0.00019154516,0.9920718,0.0005065836],"about_ca_topic_score_codex":0.00002508148,"about_ca_topic_score_gemma":4.288345e-7,"teacher_disagreement_score":0.34497312,"about_ca_system_score_codex":0.00025684637,"about_ca_system_score_gemma":0.000016094544,"threshold_uncertainty_score":0.99973977},"labels":[],"label_agreement":null},{"id":"W6930330807","doi":"10.5281/zenodo.12043641","title":"scarlett cole pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Romance; Legend; Chose; Knight; Club; White (mutation)","score_opus":0.01613585308476603,"score_gpt":0.22718924525945064,"score_spread":0.2110533921746846,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930330807","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00008767201,0.0034415976,0.00020998101,0.0003909614,0.0006231721,0.00041194345,0.00015358468,0.0014167088,0.9932644],"genre_scores_gemma":[0.0020860732,0.00032135175,0.000025599895,0.00009195017,0.00018700043,6.742714e-8,0.0053470833,0.006018375,0.9859225],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985221,0.0004112765,0.00023161113,0.00040840264,0.00008144396,0.00034514154],"domain_scores_gemma":[0.99922293,0.000012841296,0.00012232958,0.00047762768,0.00013194182,0.000032341468],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003900733,0.00020632493,0.00022038359,0.00048522433,0.00062237907,0.00031385655,0.0006948919,0.00034826866,0.35550672],"category_scores_gemma":[0.00019084557,0.0002084021,0.00008934794,0.0002925214,0.0001985935,0.00006576052,0.00070961355,0.00047938153,0.67702234],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000045656612,0.000037399095,4.8676483e-8,0.00011143147,0.00017801627,0.000012087259,0.00020594666,4.759949e-7,0.019692285,0.0013059437,0.9559368,0.022473944],"study_design_scores_gemma":[0.0003470336,0.00012452903,0.0000064108553,0.00017381411,0.000043884913,0.00015584138,0.00009344846,0.0000022445126,0.0029609476,0.0000567712,0.9958185,0.00021655411],"about_ca_topic_score_codex":0.000028098642,"about_ca_topic_score_gemma":4.286913e-7,"teacher_disagreement_score":0.32151562,"about_ca_system_score_codex":0.00008987256,"about_ca_system_score_gemma":0.0000050951803,"threshold_uncertainty_score":0.8498391},"labels":[],"label_agreement":null},{"id":"W6930340615","doi":"10.5281/zenodo.11818625","title":"whirlpool fxvs6 manual pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Work (physics); Limiting; Filter (signal processing); Table (database)","score_opus":0.016413259002146744,"score_gpt":0.23878311623073453,"score_spread":0.2223698572285878,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930340615","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000110672,0.0030381372,0.00026650119,0.00037126985,0.0007191769,0.00044282264,0.00018519397,0.0015377383,0.9933285],"genre_scores_gemma":[0.0023872503,0.00039403205,0.000025844214,0.000082388106,0.00022761754,7.821207e-8,0.0063759396,0.006260945,0.9842459],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9982903,0.00046781398,0.00027467083,0.00047069447,0.000096139476,0.00040037074],"domain_scores_gemma":[0.9991411,0.000014649554,0.00013975948,0.000527713,0.00013857946,0.00003819993],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00043835572,0.00024559378,0.00024807535,0.0005642312,0.0006406831,0.0003315893,0.00078866776,0.00040171208,0.38326988],"category_scores_gemma":[0.00021282042,0.0002452797,0.0001006311,0.00028944848,0.00020451038,0.00008471271,0.0008221874,0.0005791108,0.7103149],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00006664783,0.000043790555,5.4027602e-8,0.00012989872,0.0002178981,0.000016906683,0.00027616692,3.9508117e-7,0.013079995,0.002071709,0.9556735,0.02842303],"study_design_scores_gemma":[0.00039095982,0.0001496351,0.000009526665,0.00017669715,0.000052830677,0.00020970634,0.00013582276,0.0000024063456,0.0025347436,0.00010028474,0.9959805,0.00025687818],"about_ca_topic_score_codex":0.000027627495,"about_ca_topic_score_gemma":5.1607583e-7,"teacher_disagreement_score":0.32704508,"about_ca_system_score_codex":0.000096117146,"about_ca_system_score_gemma":0.000005744013,"threshold_uncertainty_score":0.99999994},"labels":[],"label_agreement":null},{"id":"W6930375178","doi":"10.5281/zenodo.11750308","title":"Iso 7268 pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Cover (algebra); Pace; Component (thermodynamics); Work (physics); Standard language","score_opus":0.01768101791592136,"score_gpt":0.23187782571152338,"score_spread":0.21419680779560202,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930375178","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000067511224,0.0038964131,0.00026437614,0.00038129173,0.00066600606,0.0003729071,0.00013906612,0.0015012668,0.9927112],"genre_scores_gemma":[0.0019682306,0.0004865353,0.00002372725,0.00008016141,0.00019199694,5.4064685e-8,0.0055055316,0.0063996357,0.9853441],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99848336,0.0004119003,0.00024425765,0.0004244074,0.00007968007,0.0003563837],"domain_scores_gemma":[0.99919474,0.000013243341,0.00012719644,0.0005041264,0.000127869,0.00003283526],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00039091447,0.00021817068,0.00022539696,0.00051926513,0.0006124012,0.00030120107,0.000728228,0.00036592013,0.40047556],"category_scores_gemma":[0.0002205136,0.00021615924,0.000094098796,0.00028952447,0.0001929379,0.000070439375,0.0007391524,0.00051863684,0.73123574],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000048665555,0.000037415793,4.0980947e-8,0.000115969786,0.0001868327,0.000012168676,0.0002478807,2.9585095e-7,0.016585832,0.0019058974,0.9512836,0.029575447],"study_design_scores_gemma":[0.00033855595,0.00012793684,0.000006200707,0.00017237422,0.000044001215,0.00016945736,0.000099988254,0.000002137327,0.0023735336,0.00009492313,0.9963455,0.00022538935],"about_ca_topic_score_codex":0.000028928724,"about_ca_topic_score_gemma":3.9098924e-7,"teacher_disagreement_score":0.3307602,"about_ca_system_score_codex":0.000084944615,"about_ca_system_score_gemma":0.0000050185845,"threshold_uncertainty_score":0.8814718},"labels":[],"label_agreement":null},{"id":"W6930385198","doi":"10.5281/zenodo.12052780","title":"finimetal reggane 3000 vertical pdf","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Limiting; Context (archaeology); Work (physics); Nucleofection","score_opus":0.018257895298133223,"score_gpt":0.23070397253457445,"score_spread":0.2124460772364412,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930385198","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003239492,0.006785743,0.00064612005,0.002309284,0.0015614723,0.00065768434,0.00016335057,0.0007773706,0.9838595],"genre_scores_gemma":[0.019870108,0.00088235876,0.00005594521,0.00018243492,0.0004646715,9.8114256e-8,0.0048226444,0.005005542,0.9687162],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.996478,0.001309006,0.00055987533,0.00075490685,0.0001645957,0.00073361746],"domain_scores_gemma":[0.9986443,0.00006627275,0.00012515497,0.00072446925,0.0003320229,0.00010778244],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008202945,0.00040321736,0.000437853,0.0005301839,0.0013534927,0.00060094544,0.0010903808,0.00071833725,0.7059974],"category_scores_gemma":[0.0010131848,0.0004176463,0.0002138697,0.00050663075,0.00068441214,0.00017321052,0.0014001009,0.0011494564,0.8450314],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003640832,0.00019033764,2.2282465e-7,0.00036836727,0.00061248185,0.00008520101,0.0010370559,0.0000034871473,0.07714692,0.022871723,0.8165253,0.08079484],"study_design_scores_gemma":[0.00070906174,0.0005400871,0.00006290678,0.0003788935,0.00018408179,0.00074544095,0.0002189545,0.000041068222,0.009452884,0.0002545489,0.98699576,0.0004163034],"about_ca_topic_score_codex":0.000021664559,"about_ca_topic_score_gemma":5.623854e-7,"teacher_disagreement_score":0.17047049,"about_ca_system_score_codex":0.00027327848,"about_ca_system_score_gemma":0.000016089441,"threshold_uncertainty_score":0.9999466},"labels":[],"label_agreement":null},{"id":"W6930399310","doi":"10.5281/zenodo.13193885","title":"Figure 3 in Soil BON Earthworm - A global initiative on earthworm distribution, traits, and spatiotemporal diversity patterns","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Saint Mary's University","funders":"","keywords":"Earthworm; Diversity (politics); Oligochaeta (plant); Distribution (mathematics); Species diversity; Spatial distribution; Invertebrate","score_opus":0.021728997125918956,"score_gpt":0.22680426724173935,"score_spread":0.20507527011582039,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930399310","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0860872,0.003797955,0.00056880346,0.0019927188,0.0007070199,0.0018297713,0.010874072,0.001981329,0.89216113],"genre_scores_gemma":[0.850134,0.00081981556,0.000008745281,0.00018601428,0.00017792244,2.270215e-7,0.028224902,0.0021988177,0.11824955],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984436,0.00045006655,0.00023679243,0.00044074058,0.00010535372,0.0003234396],"domain_scores_gemma":[0.99950933,0.000016942322,0.00013500168,0.00019717694,0.00010075684,0.000040772935],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003380983,0.00023141822,0.00024257386,0.00023876043,0.000659784,0.00018803534,0.0003508338,0.0003391075,0.014781818],"category_scores_gemma":[0.00016108868,0.00023649455,0.000058127098,0.00030292565,0.00016847263,0.00011003598,0.00093025505,0.00050863123,0.013648473],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00029820102,0.00011536444,0.000050680013,0.00016541024,0.00016106665,0.000042236992,0.0011300757,0.0000019861761,0.000500036,0.0021950318,0.957234,0.038105898],"study_design_scores_gemma":[0.00078597735,0.00029130254,0.005425114,0.00035223895,0.000027735263,0.000048061658,0.00022452802,0.0000055546325,0.00045070017,0.00012381941,0.99202853,0.00023641284],"about_ca_topic_score_codex":0.00018103255,"about_ca_topic_score_gemma":0.000030368063,"teacher_disagreement_score":0.7739116,"about_ca_system_score_codex":0.00017277898,"about_ca_system_score_gemma":0.0000085803695,"threshold_uncertainty_score":0.9871195},"labels":[],"label_agreement":null},{"id":"W6930404410","doi":"10.5281/zenodo.13334172","title":"Smart Hemp Gummies Israel: ביקורות, מחיר והטבות","year":2024,"lang":"he","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Context (archaeology); Smart system; Internet of Things; Smart phone","score_opus":0.023134738709540376,"score_gpt":0.24157172182828296,"score_spread":0.21843698311874257,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930404410","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.003114282,0.011065255,0.00038291595,0.00209298,0.0019911665,0.001174207,0.00052915653,0.0017181896,0.97793186],"genre_scores_gemma":[0.025594592,0.0024488096,0.000056274886,0.00029939998,0.00051513733,2.2319585e-7,0.00825358,0.009145728,0.95368624],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9953061,0.0015817416,0.00079050567,0.0010908073,0.00024826117,0.0009826366],"domain_scores_gemma":[0.9976775,0.000071488204,0.00036848264,0.0011947326,0.0005643776,0.00012339267],"candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001319278,0.0006286009,0.00063224963,0.0009981802,0.0023688518,0.0011118449,0.001744315,0.0009001291,0.42806098],"category_scores_gemma":[0.0007175391,0.00063843763,0.00029388047,0.0007412089,0.0007104216,0.00025453183,0.0022491384,0.0014040398,0.7602476],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00028947854,0.00015131957,8.3424874e-7,0.00047102058,0.000722897,0.00005558327,0.0016337248,0.0000020066198,0.035849504,0.007258254,0.9134707,0.040094715],"study_design_scores_gemma":[0.0008578497,0.0005141388,0.00007182009,0.0005344872,0.00017551238,0.00037633895,0.0009979286,0.000013379482,0.006276306,0.00025225407,0.98929125,0.00063871953],"about_ca_topic_score_codex":0.000060033966,"about_ca_topic_score_gemma":0.0000019619476,"teacher_disagreement_score":0.33218664,"about_ca_system_score_codex":0.00033959496,"about_ca_system_score_gemma":0.00001976356,"threshold_uncertainty_score":0.9999251},"labels":[],"label_agreement":null},{"id":"W6930434764","doi":"10.5281/zenodo.11841640","title":"Necronomicon alhazred pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Incantation; Monster; Reign; Arabic; Period (music); Alien","score_opus":0.01731161874831137,"score_gpt":0.22474572104387827,"score_spread":0.2074341022955669,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930434764","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020472938,0.003151927,0.0002068665,0.00034766464,0.000708788,0.00042790992,0.00014454476,0.0014153126,0.9933922],"genre_scores_gemma":[0.0035050819,0.00035152258,0.000025467529,0.000069754366,0.0001836747,6.720525e-8,0.0067950627,0.0064934012,0.98257595],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985058,0.00037900827,0.00025946775,0.00044229018,0.00005895556,0.00035451254],"domain_scores_gemma":[0.9992111,0.00001280157,0.00014237934,0.0005016396,0.00009827362,0.000033840326],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003702038,0.00022338613,0.00024023825,0.0004972149,0.000563442,0.00031305497,0.00071045413,0.0003585664,0.34453562],"category_scores_gemma":[0.00016348744,0.0002293758,0.00009823747,0.00021300581,0.00018723095,0.000075115306,0.0007031865,0.0004614708,0.67645234],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000061681065,0.000034227764,5.1844292e-8,0.000090323425,0.00020374171,0.0000076061965,0.00022805769,5.381942e-7,0.027607327,0.0013328189,0.9388547,0.031578906],"study_design_scores_gemma":[0.00042559567,0.000117630414,0.000009245867,0.00014326273,0.000046007426,0.00012398136,0.00009532959,0.000003352027,0.0036105635,0.000069828544,0.9951205,0.00023469901],"about_ca_topic_score_codex":0.00004229927,"about_ca_topic_score_gemma":4.6330476e-7,"teacher_disagreement_score":0.33191672,"about_ca_system_score_codex":0.00010861956,"about_ca_system_score_gemma":0.0000055921428,"threshold_uncertainty_score":0.93536735},"labels":[],"label_agreement":null},{"id":"W6930450338","doi":"10.5281/zenodo.12015268","title":"apprendre à rédiger pdf gratuit","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Language and gender; Leisure time; Virtual world","score_opus":0.017531528909790654,"score_gpt":0.2265848546499109,"score_spread":0.20905332574012025,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930450338","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0009052383,0.00944646,0.00083970156,0.0017793605,0.001797538,0.00077244634,0.00026821252,0.0010107474,0.9831803],"genre_scores_gemma":[0.0087437155,0.0013071323,0.000052627092,0.00016217474,0.00048732836,1.3146084e-7,0.0073769623,0.006340176,0.97552973],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9965418,0.0011934702,0.0005402723,0.0008060887,0.0001574608,0.0007608906],"domain_scores_gemma":[0.9984308,0.00004272067,0.00023712427,0.0008051437,0.00038707053,0.0000971235],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0007766192,0.0004473369,0.00042962097,0.0006690534,0.0016916816,0.000818546,0.0012674731,0.0007524322,0.646697],"category_scores_gemma":[0.00049608963,0.00046661514,0.00022090525,0.000596326,0.00056341063,0.00020129484,0.0014845349,0.0011724505,0.7918929],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017385533,0.00013359622,2.412102e-7,0.000419422,0.00050112605,0.000049146623,0.0017077103,0.0000045269926,0.041825514,0.019413758,0.8139545,0.121816605],"study_design_scores_gemma":[0.000611804,0.000341312,0.000043225904,0.00046971513,0.00013996506,0.0005953467,0.0003873842,0.000019390678,0.004629356,0.0003583153,0.9919402,0.00046395866],"about_ca_topic_score_codex":0.000028906454,"about_ca_topic_score_gemma":9.78904e-7,"teacher_disagreement_score":0.17798573,"about_ca_system_score_codex":0.0002751596,"about_ca_system_score_gemma":0.000013809642,"threshold_uncertainty_score":0.99977857},"labels":[],"label_agreement":null},{"id":"W6930493993","doi":"10.5281/zenodo.12356947","title":"transport et tourisme pdf","year":2024,"lang":"fr","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Tourism; Air transport; Directory; Destinations","score_opus":0.017388023538301912,"score_gpt":0.2332529581656159,"score_spread":0.215864934627314,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930493993","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0014326895,0.0051398836,0.001354053,0.0033075353,0.0011881696,0.0006806263,0.00027904898,0.0007774832,0.9858405],"genre_scores_gemma":[0.016174078,0.0015824075,0.00006228625,0.00028613905,0.00031128814,9.618244e-8,0.007665568,0.0052994667,0.9686187],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9968544,0.0011831595,0.00052066677,0.0006822139,0.00014252,0.0006169997],"domain_scores_gemma":[0.9987845,0.000037740443,0.00019717998,0.0006286639,0.00026789503,0.000084010564],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010403087,0.00038831934,0.00039619618,0.0007316119,0.0011361332,0.00037708756,0.0010092757,0.0006390805,0.678412],"category_scores_gemma":[0.00027624556,0.00041023645,0.00020863357,0.0005597266,0.0004249716,0.00019264876,0.00060884154,0.0011142561,0.6660602],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024243855,0.0001649046,4.480955e-7,0.00046096,0.00051153806,0.00009318655,0.0024604625,0.000008498107,0.033180226,0.023531903,0.8283233,0.111022145],"study_design_scores_gemma":[0.00064422184,0.00037513088,0.00016114954,0.00043898178,0.00014281522,0.00046290693,0.00024147346,0.000011122532,0.0030199345,0.0002573799,0.99383694,0.00040794635],"about_ca_topic_score_codex":0.00004152435,"about_ca_topic_score_gemma":0.0000015741018,"teacher_disagreement_score":0.16551365,"about_ca_system_score_codex":0.00021287808,"about_ca_system_score_gemma":0.000016227388,"threshold_uncertainty_score":0.99983495},"labels":[],"label_agreement":null},{"id":"W6930497761","doi":"10.5281/zenodo.12066574","title":"Pure Slim Keto ACV Gummies Canada Reviews – Fit Science ACV Gummies!","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Limiting; Quality (philosophy); Work (physics); Ridiculous; Order (exchange); Population","score_opus":0.028492978735245946,"score_gpt":0.2509114301865247,"score_spread":0.22241845145127873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930497761","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0004258396,0.015907116,0.000056568053,0.0011999006,0.0014141209,0.000968926,0.00035227867,0.00069522497,0.97898],"genre_scores_gemma":[0.0075113866,0.0032093239,0.000033627948,0.00023821916,0.00022538738,2.929062e-7,0.0022597318,0.0029906845,0.98353136],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975084,0.00052581355,0.00044105982,0.00068578945,0.00021022986,0.0006286761],"domain_scores_gemma":[0.99847025,0.000022482638,0.00026409043,0.0008633627,0.00030607593,0.00007375762],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0011041102,0.00033643027,0.00040601828,0.0006133801,0.0014455736,0.0004985839,0.0016912665,0.00028028028,0.11680307],"category_scores_gemma":[0.0010169466,0.00030966476,0.00009361501,0.0008172308,0.0005786075,0.0001791885,0.0013940361,0.00066837383,0.18844692],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000038911858,0.000023811093,1.4875216e-7,0.00020382175,0.00008881877,0.000020076952,0.00037711125,6.8966216e-7,0.017049665,0.0007633717,0.95723104,0.0242025],"study_design_scores_gemma":[0.00024642833,0.000100718906,0.000015017329,0.0004147827,0.000043746295,0.00014978673,0.00026883723,0.000002032186,0.0033125486,0.000045020715,0.99507695,0.00032411242],"about_ca_topic_score_codex":0.0039052595,"about_ca_topic_score_gemma":0.00034679062,"teacher_disagreement_score":0.07164385,"about_ca_system_score_codex":0.00038884618,"about_ca_system_score_gemma":0.00006185126,"threshold_uncertainty_score":0.99993557},"labels":[],"label_agreement":null},{"id":"W6930516567","doi":"10.5281/zenodo.11745292","title":"Heikin ashi strategie pdf","year":2024,"lang":"de","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"GDP deflator; Product category; Focus (optics); China; Terms of trade; Quarter (Canadian coin); Representation (politics); White (mutation)","score_opus":0.023884724182557406,"score_gpt":0.24137880372121293,"score_spread":0.21749407953865552,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930516567","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0008942333,0.009780066,0.0004326078,0.0010276743,0.0016840437,0.0008902596,0.00032638665,0.0010840072,0.9838807],"genre_scores_gemma":[0.01889147,0.002908603,0.00004140207,0.00017073187,0.00078785006,1.3155534e-7,0.014607299,0.008393028,0.9541995],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9960011,0.0014373739,0.0006354007,0.0009145627,0.00019465704,0.0008168858],"domain_scores_gemma":[0.9982044,0.00004340439,0.00031160028,0.000923871,0.00041313493,0.000103558064],"candidate_categories":["metaepi_narrow","sts","scholarly_communication","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0010999872,0.0004993108,0.0004832579,0.0007825304,0.0017357736,0.0012118652,0.0014912845,0.0008118751,0.59651643],"category_scores_gemma":[0.0004516293,0.00051727623,0.00022097517,0.00061108486,0.0005037121,0.00020554446,0.0014739155,0.0013483386,0.89672655],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027897552,0.00014573788,1.2906177e-7,0.00036512286,0.00073872315,0.00006768004,0.00091052504,0.000004086898,0.03955037,0.008034665,0.91103125,0.038872745],"study_design_scores_gemma":[0.0007570355,0.0004851719,0.000027422047,0.00042383882,0.00017061525,0.000288888,0.00051273074,0.00001613674,0.003367471,0.0003646358,0.9930734,0.00051263726],"about_ca_topic_score_codex":0.00002799787,"about_ca_topic_score_gemma":7.0377195e-7,"teacher_disagreement_score":0.30021018,"about_ca_system_score_codex":0.00026584376,"about_ca_system_score_gemma":0.000023220384,"threshold_uncertainty_score":0.999825},"labels":[],"label_agreement":null},{"id":"W6930560882","doi":"10.5281/zenodo.12260270","title":"how to download the economist pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Download; Reading (process); Politics; Information economics; Developing country; Economic analysis; Variety (cybernetics); Caveat emptor","score_opus":0.0166586836561873,"score_gpt":0.2168034776543097,"score_spread":0.2001447939981224,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930560882","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009391059,0.0019164952,0.00026840446,0.0055193286,0.0006201732,0.0006278608,0.0002701455,0.0008090297,0.98987466],"genre_scores_gemma":[0.002387665,0.00020020847,0.000011834338,0.00021435192,0.00018813548,1.4729021e-7,0.0028618632,0.0027121536,0.99142367],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9986868,0.0003761439,0.00017551285,0.0003854774,0.00005591022,0.0003201691],"domain_scores_gemma":[0.9991588,0.000018717357,0.00010334333,0.00058072386,0.00010294221,0.000035497782],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00041550896,0.00019472797,0.00019287877,0.00033164155,0.0007727117,0.00075976085,0.0009368397,0.0002250538,0.1405818],"category_scores_gemma":[0.00027305091,0.00015450444,0.000081917075,0.00024032255,0.00016743172,0.00006457994,0.000804631,0.00041823977,0.5966405],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0000472893,0.000020315547,2.2129006e-8,0.000051534174,0.00015565899,0.00000432116,0.00034269423,6.3723104e-7,0.008723231,0.0013414975,0.9580116,0.03130116],"study_design_scores_gemma":[0.00021889462,0.00012577756,0.0000039376455,0.000075579184,0.000032090393,0.000097633434,0.00021247366,8.9323595e-7,0.002092001,0.000037525973,0.9969227,0.00018053193],"about_ca_topic_score_codex":0.000027577578,"about_ca_topic_score_gemma":0.0000010337304,"teacher_disagreement_score":0.45605874,"about_ca_system_score_codex":0.00008959866,"about_ca_system_score_gemma":0.000004869087,"threshold_uncertainty_score":0.8602038},"labels":[],"label_agreement":null},{"id":"W6930655674","doi":"10.5281/zenodo.12519174","title":"+256751735278 @$$# !!!Strong Death spells in Australia, Canada // Revenge Death spells caster In Malaysia, Poland.","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Spell; MAGIC (telescope); Harm; Wife; Work (physics)","score_opus":0.033055672635808206,"score_gpt":0.2514711147373844,"score_spread":0.2184154421015762,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930655674","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.023135185,0.0022046284,0.00003694114,0.00035868332,0.00064588396,0.0008896197,0.00043921804,0.00013287869,0.97215694],"genre_scores_gemma":[0.070920534,0.0002592273,0.000021697455,0.00005894561,0.00013057698,3.6464908e-8,0.001599049,0.0027648758,0.92424506],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9975247,0.0006507915,0.00048099706,0.0005703728,0.00013313234,0.00064002746],"domain_scores_gemma":[0.9991559,0.00002655535,0.00016773457,0.0005174317,0.00007874009,0.000053672586],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00053396,0.0003279338,0.00039626463,0.0007675077,0.000104331986,0.00018498069,0.0007112749,0.00039184888,0.17319293],"category_scores_gemma":[0.0001222772,0.0003408855,0.000069171096,0.00040117404,0.00008157488,0.0001020527,0.00053703703,0.00089194666,0.24835412],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013406991,0.000071143455,0.000040665345,0.00021641857,0.00012071697,0.00024665464,0.00053644524,0.000012757335,0.0053880075,0.0006970222,0.989657,0.0028791435],"study_design_scores_gemma":[0.0007381766,0.00010857116,0.00058220985,0.00048016597,0.000026787488,0.00018414632,0.0001775023,0.000008856943,0.0011754436,0.000043426215,0.9961411,0.00033364675],"about_ca_topic_score_codex":0.06974094,"about_ca_topic_score_gemma":0.008245511,"teacher_disagreement_score":0.07516119,"about_ca_system_score_codex":0.00050984556,"about_ca_system_score_gemma":0.00003652812,"threshold_uncertainty_score":0.99990433},"labels":[],"label_agreement":null},{"id":"W6930672475","doi":"10.5281/zenodo.12345257","title":"neuropathy symptom score pdf","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Diabetic neuropathy; Neuropathic pain; Peripheral neuropathy; Polyneuropathy; Weakness; Diabetes mellitus; Severity of illness; Disease; Physical examination","score_opus":0.018865651604286368,"score_gpt":0.22394133000527383,"score_spread":0.20507567840098745,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930672475","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00032508903,0.0035160503,0.0002032698,0.0003040203,0.00088763115,0.0004623151,0.00016111042,0.0018119765,0.9923285],"genre_scores_gemma":[0.0047739027,0.0005488878,0.000014371176,0.00010971819,0.0002373763,7.77388e-8,0.0056901705,0.007977003,0.9806485],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981703,0.00054758554,0.0002762224,0.0005118338,0.00009608977,0.00039793382],"domain_scores_gemma":[0.999063,0.000016421809,0.00015034669,0.000584451,0.0001450861,0.00004068499],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00038708464,0.00025855392,0.00025225617,0.0005869253,0.00066198024,0.0003580261,0.0008381417,0.00034261297,0.24579906],"category_scores_gemma":[0.00026722805,0.0002570133,0.0001061816,0.00034592513,0.00021816844,0.000081159524,0.0008794746,0.0006040494,0.6238231],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000055849494,0.00004279,1.5755145e-7,0.00014172049,0.00014823565,0.00002663157,0.0002476241,4.933325e-7,0.020096846,0.0015248617,0.952362,0.025352761],"study_design_scores_gemma":[0.0003580001,0.00017131226,0.000019462253,0.0002305644,0.000052375977,0.00027270502,0.00006527669,0.0000030389988,0.0020322693,0.000062577434,0.9964802,0.0002521928],"about_ca_topic_score_codex":0.000020734658,"about_ca_topic_score_gemma":2.7864132e-7,"teacher_disagreement_score":0.37802404,"about_ca_system_score_codex":0.000077778684,"about_ca_system_score_gemma":0.0000060741063,"threshold_uncertainty_score":0.9999882},"labels":[],"label_agreement":null},{"id":"W6930703496","doi":"10.5281/zenodo.15218804","title":"Thereva kristinae Holston & Irwin 2005","year":2025,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Royal British Columbia Museum","funders":"","keywords":"Period (music); West coast; Indian ocean; Historical record","score_opus":0.017103373345172,"score_gpt":0.2417771426899069,"score_spread":0.2246737693447349,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930703496","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.2219575,0.0030302869,0.005789952,0.004569446,0.00080392114,0.00095740054,0.00008959048,0.001752084,0.7610498],"genre_scores_gemma":[0.95620626,0.00023906675,0.00005369943,0.00029090617,0.000051564897,8.422581e-8,0.0019275818,0.0004952563,0.040735576],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985866,0.00051703316,0.00023939672,0.0002647647,0.00005233908,0.0003398974],"domain_scores_gemma":[0.9992359,0.000036728146,0.00007747162,0.00038718278,0.00023946834,0.000023229124],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00065595657,0.0001187806,0.00013734453,0.00024527937,0.0017344152,0.00018542213,0.00061025645,0.00012117428,0.021958116],"category_scores_gemma":[0.0004848869,0.00011810355,0.00005531098,0.0003163191,0.00016565938,0.00014883798,0.00051104295,0.00028046782,0.02641899],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00027940268,0.00010788948,0.000005042188,0.00003879912,0.000102410806,0.0000044706244,0.00048364227,0.00000838499,0.30107316,0.011585135,0.51117826,0.17513344],"study_design_scores_gemma":[0.0006266991,0.000092659946,0.0012028058,0.00003721574,0.00001706484,0.00004848472,0.00021413038,0.0000134051,0.038006857,0.00016617522,0.9594638,0.00011073178],"about_ca_topic_score_codex":0.000017168126,"about_ca_topic_score_gemma":2.6487615e-7,"teacher_disagreement_score":0.73424876,"about_ca_system_score_codex":0.00010291278,"about_ca_system_score_gemma":0.0000068164536,"threshold_uncertainty_score":0.9995652},"labels":[],"label_agreement":null},{"id":"W6930847884","doi":"10.5281/zenodo.13741179","title":"Fig. 2 in Small shelly fossils from the argillaceous facies of the Lower Cambrian Forteau Formation of western Newfoundland","year":2007,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Dorsum; Facies; Scale (ratio); Apex (geometry); Subsidence","score_opus":0.021348092583423114,"score_gpt":0.22179986698646575,"score_spread":0.20045177440304263,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930847884","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.19840898,0.0045123487,0.0022230481,0.00084059575,0.0010584943,0.002579231,0.0011546181,0.0004104459,0.7888122],"genre_scores_gemma":[0.65610313,0.0009609941,0.00004514877,0.00016745974,0.00018755945,2.5881457e-7,0.0044543366,0.002828739,0.33525234],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9984952,0.00053057744,0.00042899023,0.00019940462,0.00009445785,0.00025136932],"domain_scores_gemma":[0.99876064,0.000067449466,0.0004435468,0.00055126584,0.00016269839,0.000014419839],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005570763,0.00016629095,0.00025024108,0.00026439215,0.00038543894,0.00007110681,0.00089648797,0.00025901198,0.0062346393],"category_scores_gemma":[0.0002819071,0.000115446324,0.00008905674,0.0003022667,0.00028215343,0.00007918118,0.0004545159,0.00032827904,0.0014007014],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0018062341,0.0005529925,0.0004920954,0.00046933503,0.000662572,0.000014277708,0.012994515,0.000053099888,0.14668787,0.0026727507,0.6354953,0.19809893],"study_design_scores_gemma":[0.00071440614,0.0001279506,0.0046373946,0.00023589494,0.00002702184,0.000029628984,0.00029005302,0.00000644078,0.0037810965,0.000027161546,0.9900008,0.00012213776],"about_ca_topic_score_codex":0.0010871628,"about_ca_topic_score_gemma":0.00029670369,"teacher_disagreement_score":0.45769417,"about_ca_system_score_codex":0.00008119399,"about_ca_system_score_gemma":0.000009622712,"threshold_uncertainty_score":0.99937683},"labels":[],"label_agreement":null},{"id":"W6930856577","doi":"10.5281/zenodo.15178441","title":"Deterioro cognitivo en pacientes con hipoacusias comparados con pacientes con audición normal","year":2025,"lang":"es","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Sensorineural hearing loss; Hearing loss; Reference values; Cognitive impairment","score_opus":0.017552729880265284,"score_gpt":0.25469654203430003,"score_spread":0.23714381215403474,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930856577","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.84538215,0.0035258648,0.0028046952,0.0026352468,0.0011764526,0.0017974405,0.0006639815,0.0010669626,0.1409472],"genre_scores_gemma":[0.988959,0.00097065436,0.000030998002,0.00039492434,0.00008824048,2.945538e-7,0.0040967446,0.0005754559,0.004883696],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9951443,0.0023030762,0.00076152233,0.00072785077,0.00020204103,0.0008612207],"domain_scores_gemma":[0.99766284,0.00027903772,0.00034548566,0.00064977823,0.0009608555,0.000101989885],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0013730328,0.00041890042,0.00053249125,0.00070012495,0.0033498975,0.00088858296,0.0010991426,0.00038214974,0.0155069195],"category_scores_gemma":[0.0013639495,0.00044179935,0.00017593156,0.00077444734,0.00095930445,0.00044948736,0.0014642987,0.00075915357,0.02023914],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0028104114,0.00065069116,0.00027476755,0.00049844105,0.00086466986,0.00005419264,0.004370187,0.000014618913,0.73315865,0.019417966,0.09688559,0.14099982],"study_design_scores_gemma":[0.0027116654,0.0007511578,0.007905561,0.00044601163,0.0001494305,0.0002409602,0.0015555047,0.00016593773,0.1134751,0.000066698834,0.87212336,0.00040863076],"about_ca_topic_score_codex":0.000040266066,"about_ca_topic_score_gemma":7.9353583e-7,"teacher_disagreement_score":0.77523774,"about_ca_system_score_codex":0.00025070022,"about_ca_system_score_gemma":0.000032596716,"threshold_uncertainty_score":0.99980336},"labels":[],"label_agreement":null},{"id":"W6930859968","doi":"10.5281/zenodo.14655113","title":"Fig. 2. Buluka huddlestoni Austin, 1989, female holotype from NHM. A in Description of five new species of the rare genus Buluka (Hymenoptera: Braconidae: Microgastrinae) with an updated key to the world species","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Holotype; Key (lock); Dorsum; Genus; Paratype","score_opus":0.024895529458117644,"score_gpt":0.2236362805161808,"score_spread":0.19874075105806316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930859968","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.4421931,0.0049185706,0.00033352614,0.003449509,0.0010549345,0.0032949473,0.002131702,0.0007287871,0.5418949],"genre_scores_gemma":[0.16976747,0.00012648685,0.00013633064,0.000074176845,0.00013718601,2.5340287e-7,0.0032704445,0.0013658673,0.8251218],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981562,0.00055825675,0.00040660237,0.0004245445,0.00014297536,0.00031145362],"domain_scores_gemma":[0.9986625,0.000024935793,0.00031809616,0.00072763616,0.00022935138,0.000037514772],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00033339288,0.0002581581,0.0003391918,0.00050929456,0.00033080202,0.000175316,0.0010728512,0.00019258642,0.034799058],"category_scores_gemma":[0.00014562954,0.00018125412,0.00006988076,0.0008828474,0.00032253034,0.00011359504,0.00073234027,0.00053398806,0.0056219865],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008014031,0.00010651747,0.000025543683,0.000072680596,0.0002505857,0.000012188046,0.0048749824,0.00004334369,0.080826856,0.00060833263,0.90830964,0.004067936],"study_design_scores_gemma":[0.0006278081,0.00034946908,0.003211573,0.0004292679,0.00006977582,0.00003623152,0.0011906831,0.0000030548943,0.017453086,0.000015779198,0.976435,0.00017828181],"about_ca_topic_score_codex":0.0007976012,"about_ca_topic_score_gemma":0.00020323251,"teacher_disagreement_score":0.28322685,"about_ca_system_score_codex":0.0001065153,"about_ca_system_score_gemma":0.000028941347,"threshold_uncertainty_score":0.99515224},"labels":[],"label_agreement":null},{"id":"W6930869103","doi":"10.5281/zenodo.15692180","title":"Fig. 3 in A comparative analysis of life-history features and adaptive strategies of Arctic and subarctic seal species--who will win the climate change challenge?","year":2025,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Blubber; Subarctic climate; Arctic; Seasonality; Climate change; Harbour; Seal (emblem)","score_opus":0.043172276682228505,"score_gpt":0.2455353925009065,"score_spread":0.202363115818678,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930869103","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026317928,0.050509095,0.000089598725,0.0011035331,0.0002134117,0.001844444,0.0008953983,0.00022400568,0.91880256],"genre_scores_gemma":[0.97003984,0.00761454,0.000009257548,0.000028734206,0.000029169478,2.9005903e-7,0.00079236605,0.0003538853,0.021131884],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998425,0.00079600763,0.00025971164,0.00025807292,0.00006893339,0.00019224093],"domain_scores_gemma":[0.9991855,0.000079890815,0.00027471659,0.00026216736,0.00017949595,0.000018222723],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003951967,0.00015976146,0.00045458952,0.00076862256,0.00021798856,0.00003834798,0.00029589882,0.0001650001,0.0048819953],"category_scores_gemma":[0.00014147862,0.0001336009,0.00005707743,0.0003877958,0.00056832447,0.00010743298,0.0003953112,0.00030575995,0.000057369478],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0058637154,0.0009145882,0.00025576918,0.0037343008,0.013182703,0.000025848085,0.11150929,0.00007956315,0.022182563,0.28441852,0.52595866,0.031874467],"study_design_scores_gemma":[0.0010940891,0.00053143397,0.036569543,0.00048678028,0.0004946489,0.000013992918,0.007739389,0.000059834674,0.00022808924,0.00006139606,0.9524706,0.00025020202],"about_ca_topic_score_codex":0.00027511813,"about_ca_topic_score_gemma":0.000051289167,"teacher_disagreement_score":0.94372195,"about_ca_system_score_codex":0.000075266486,"about_ca_system_score_gemma":0.000014656653,"threshold_uncertainty_score":0.99602765},"labels":[],"label_agreement":null},{"id":"W6930871234","doi":"10.5281/zenodo.16354619","title":"Characterization of Onshore Formations in Nova Scotia for CO2 Storage","year":2024,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Geological Survey of Canada; Memorial University of Newfoundland","funders":"","keywords":"Permeability (electromagnetism); Porosity; Petrography; Caprock; Lithology; Carbon dioxide","score_opus":0.025560148829064166,"score_gpt":0.24637164461403838,"score_spread":0.22081149578497422,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930871234","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97037834,0.00034617033,0.019013103,0.0007695531,0.00046494108,0.0009397182,0.00040937867,0.00041771855,0.007261069],"genre_scores_gemma":[0.9922783,0.00004457068,0.00003983624,0.00002464256,0.000029307585,1.10418426e-7,0.0064279763,0.00028823767,0.0008670362],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9990294,0.0002078765,0.00031883526,0.00018440608,0.000049593553,0.00020989927],"domain_scores_gemma":[0.9994201,0.00004466133,0.00007636148,0.0001972015,0.00024602693,0.000015657732],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0005834884,0.00009068044,0.0001295711,0.0004010544,0.00038448328,0.00013552344,0.00028856777,0.00009923376,0.004537091],"category_scores_gemma":[0.0002688346,0.00009348648,0.000051088613,0.00041981216,0.00009382081,0.00036262473,0.00016362754,0.00016738768,0.0034597456],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00016203264,0.00006953487,0.0000039288657,0.00016958521,0.000048527698,0.0000015960924,0.0020188736,0.000018560542,0.9465911,0.008638916,0.012538389,0.029738994],"study_design_scores_gemma":[0.0006232163,0.0002230618,0.0016556451,0.0001338276,0.000018494495,0.000057349334,0.000270665,0.00047466636,0.14626366,0.00009851893,0.85004973,0.00013113504],"about_ca_topic_score_codex":0.000014986119,"about_ca_topic_score_gemma":0.0000013235372,"teacher_disagreement_score":0.83751136,"about_ca_system_score_codex":0.000081451355,"about_ca_system_score_gemma":0.000008529792,"threshold_uncertainty_score":0.9973162},"labels":[],"label_agreement":null},{"id":"W6930872492","doi":"10.5281/zenodo.2639774","title":"pynbody/pynbody: Version 0.47","year":2019,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia; University of Toronto","funders":"","keywords":"Python (programming language); Crash; Halo; Smoothing; Hash function; Thread (computing)","score_opus":0.015342649568896288,"score_gpt":0.22071697496307735,"score_spread":0.20537432539418107,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6930872492","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00038651744,0.0013675616,0.00025400546,0.000332389,0.00077078806,0.0006569626,0.00022279033,0.001434779,0.9945742],"genre_scores_gemma":[0.0077957055,0.00067412306,0.000036811914,0.00012125002,0.00019769595,6.169865e-8,0.013891284,0.0069028405,0.97038025],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9981065,0.0005944301,0.00026977522,0.00047718882,0.00011785706,0.00043426664],"domain_scores_gemma":[0.998771,0.00002780397,0.0002396588,0.0007243498,0.00019739766,0.00003978343],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00044695797,0.00025997436,0.00029650994,0.00054096425,0.0009358732,0.00020241614,0.0009712969,0.00047885414,0.13385043],"category_scores_gemma":[0.00027421035,0.00026504285,0.00010660821,0.00027210105,0.0001858993,0.00011751353,0.0008928929,0.0005097417,0.31903276],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014320236,0.000058689566,4.2129494e-7,0.00008237035,0.0001470669,0.0000053769027,0.00019334862,0.0000014939834,0.031423032,0.0014710239,0.94051886,0.025955116],"study_design_scores_gemma":[0.00096555566,0.00021926101,0.00003428122,0.00014088764,0.000037092268,0.00009195923,0.00012140167,0.000004385082,0.003739611,0.00002080522,0.9943415,0.00028329663],"about_ca_topic_score_codex":0.000048931543,"about_ca_topic_score_gemma":2.9379004e-7,"teacher_disagreement_score":0.18518232,"about_ca_system_score_codex":0.00012631973,"about_ca_system_score_gemma":0.000008603911,"threshold_uncertainty_score":0.99998015},"labels":[],"label_agreement":null},{"id":"W6931024577","doi":"10.5281/zenodo.2597526","title":"fMRIPrep: a robust preprocessing pipeline for functional MRI","year":2019,"lang":"en","type":"other","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University; Montreal Neurological Institute and Hospital","funders":"","keywords":"Pipeline (software); Preprocessor; Workflow; Pattern recognition (psychology); Pipeline transport","score_opus":0.03672271298316098,"score_gpt":0.24616454598777698,"score_spread":0.209441833004616,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931024577","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0000027567687,0.024403036,0.0011950623,0.00025634674,0.0018601418,0.002384288,0.25098026,0.0007631078,0.718155],"genre_scores_gemma":[0.000041653133,0.000008808088,0.000049882074,0.00007550217,0.00023564613,0.0002903679,0.31881964,0.00015795525,0.68032056],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99912226,0.000047808244,0.00020883078,0.00034612045,0.00003149559,0.00024346131],"domain_scores_gemma":[0.99917424,0.00011954539,0.00027039048,0.00033386098,0.00009276465,0.000009222766],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00005485294,0.00022206688,0.00026977048,0.0001629796,0.000078929785,0.000023718962,0.00016740305,0.0006936143,0.45047966],"category_scores_gemma":[0.00038558134,0.00020529832,0.00013933149,0.000060102993,0.000009156375,0.000059668553,0.000067848494,0.00021060616,0.03293331],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000115708914,0.000019098417,8.220454e-7,0.00042173787,0.00009052802,5.470265e-7,0.000021957134,0.000025606245,0.0013403419,0.0000087037415,0.99491155,0.0030433862],"study_design_scores_gemma":[0.00075123005,0.000030148214,0.00001868164,0.0023067603,0.00002834252,0.000016835738,0.000011818015,0.000061383354,0.0042694802,0.0000048848265,0.99226326,0.00023715866],"about_ca_topic_score_codex":0.000006464102,"about_ca_topic_score_gemma":0.0000060953817,"teacher_disagreement_score":0.41754633,"about_ca_system_score_codex":0.000028806007,"about_ca_system_score_gemma":0.00016844491,"threshold_uncertainty_score":0.9678197},"labels":[],"label_agreement":null},{"id":"W6931107089","doi":"10.5281/zenodo.3541300","title":"NPA_ref711","year":2019,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Lipid A; Lipopolysaccharide; Antagonist; Blocking (statistics)","score_opus":0.01621434576774545,"score_gpt":0.2169550574507213,"score_spread":0.20074071168297586,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931107089","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6049612,0.00050706137,0.0006172983,0.0008067511,0.00048750525,0.0005451844,0.00003487111,0.00095853367,0.3910816],"genre_scores_gemma":[0.98529345,0.00006334924,0.000027121692,0.00010619519,0.00003289883,1.768189e-8,0.0016404331,0.000505639,0.012330885],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989366,0.0003264013,0.00017806384,0.00023023781,0.00005624261,0.00027248808],"domain_scores_gemma":[0.9993218,0.000021742711,0.00006866335,0.0003556016,0.00020912738,0.000023063405],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004367196,0.000093090624,0.00011423761,0.00015182508,0.0009192747,0.00014491045,0.0005010482,0.00009778896,0.056030627],"category_scores_gemma":[0.00018347132,0.00009086293,0.000047744274,0.00020509813,0.000082653765,0.00018510366,0.00041775932,0.00021744148,0.17128377],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00023158506,0.00007951397,0.000008081253,0.00003442841,0.000077562894,0.0000030689698,0.0007693093,0.000012032158,0.7455746,0.0088425465,0.1252413,0.119125985],"study_design_scores_gemma":[0.0006196282,0.00018482153,0.00077505945,0.000015231035,0.000006369021,0.00011716468,0.00018086478,0.000013386703,0.03798735,0.000067488494,0.95992386,0.00010876067],"about_ca_topic_score_codex":0.000006216799,"about_ca_topic_score_gemma":3.4257972e-8,"teacher_disagreement_score":0.8346826,"about_ca_system_score_codex":0.0000595494,"about_ca_system_score_gemma":0.0000025528414,"threshold_uncertainty_score":0.94483227},"labels":[],"label_agreement":null},{"id":"W6931112966","doi":"10.5281/zenodo.4367873","title":"Bromus secalinus Linnaeus 1753","year":2007,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bromus; Taxon; Genus; Type (biology); Nomenclature","score_opus":0.02144626153163333,"score_gpt":0.2392670811212981,"score_spread":0.21782081958966476,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931112966","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.73504126,0.0015996118,0.013061953,0.0011588272,0.0009451595,0.0007525488,0.00008005589,0.0020661005,0.24529448],"genre_scores_gemma":[0.9903355,0.000085139545,0.00009130757,0.00016577284,0.000108313194,1.7744147e-8,0.001979484,0.0006257698,0.006608666],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99860275,0.000314746,0.00029999143,0.0002681697,0.00007948355,0.00043483922],"domain_scores_gemma":[0.9991536,0.0000463989,0.00009881707,0.00036007448,0.00029479677,0.00004631441],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0012106991,0.00012508953,0.00013442991,0.00022362941,0.0016057595,0.00015579787,0.0005654701,0.00015700684,0.017742548],"category_scores_gemma":[0.00041467705,0.00012712191,0.0000600709,0.00027892235,0.00016316537,0.00017228509,0.00044309514,0.00032447805,0.045718636],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00061116705,0.00016233626,0.000010224986,0.000032411586,0.00011985007,0.00003243576,0.0015036911,0.000008989961,0.5570539,0.01048116,0.18237427,0.24760954],"study_design_scores_gemma":[0.0006687156,0.00019754477,0.0024172545,0.000015014815,0.000011316385,0.0002740229,0.00016841687,0.000006047334,0.071778774,0.00007632605,0.92424667,0.00013990639],"about_ca_topic_score_codex":0.0000148236895,"about_ca_topic_score_gemma":3.521809e-7,"teacher_disagreement_score":0.7418724,"about_ca_system_score_codex":0.000091663554,"about_ca_system_score_gemma":0.000003184909,"threshold_uncertainty_score":0.999694},"labels":[],"label_agreement":null},{"id":"W6931121979","doi":"10.5281/zenodo.3542057","title":"NPA_ref11767","year":2019,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Simon Fraser University","funders":"","keywords":"Nucleoside; Parity (physics); Purine nucleoside phosphorylase; Samarium","score_opus":0.015966683688059997,"score_gpt":0.21728419019246922,"score_spread":0.20131750650440922,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931121979","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6194251,0.00045310732,0.000603274,0.0008017305,0.0004887998,0.0005531184,0.00003591152,0.000945284,0.37669367],"genre_scores_gemma":[0.985193,0.00005593413,0.000027091286,0.000109735076,0.000033141034,1.8691477e-8,0.0016771152,0.0005057947,0.012398141],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99891955,0.00032970536,0.00018101251,0.00023442082,0.000057399106,0.00027789103],"domain_scores_gemma":[0.99931055,0.000022482802,0.00006977626,0.00036133872,0.00021228951,0.0000235311],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004364518,0.000094994,0.00011622297,0.0001568444,0.0009400183,0.00015115061,0.00050762354,0.000099068224,0.056550078],"category_scores_gemma":[0.00018899931,0.0000927609,0.00004872124,0.00021299426,0.00008441707,0.00019161351,0.0004238503,0.00022086612,0.17089914],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021453867,0.00007334546,0.00000813232,0.000030143055,0.00007257183,0.0000028589966,0.0006861095,0.000011290143,0.7655861,0.008350318,0.12020784,0.10475681],"study_design_scores_gemma":[0.000629332,0.00018181936,0.0010021015,0.000014822638,0.000006649327,0.000119224525,0.00018039322,0.000013884039,0.034550257,0.00007068034,0.9631193,0.00011150785],"about_ca_topic_score_codex":0.000006161426,"about_ca_topic_score_gemma":3.3572018e-8,"teacher_disagreement_score":0.8429115,"about_ca_system_score_codex":0.000060609585,"about_ca_system_score_gemma":0.0000025923791,"threshold_uncertainty_score":0.94431233},"labels":[],"label_agreement":null},{"id":"W6931159299","doi":"10.5281/zenodo.4258622","title":"©Ver {HD} Antrum (2020) Película completa cgb","year":2020,"lang":"es","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Illusion; Entertainment; Motion picture; Video recording","score_opus":0.028678394990871867,"score_gpt":0.23342210512134212,"score_spread":0.20474371013047027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931159299","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.5560298,0.011973651,0.008913581,0.08042709,0.0022976946,0.004299227,0.002541191,0.005212979,0.32830477],"genre_scores_gemma":[0.98684347,0.0012178565,0.000056591838,0.0011047544,0.00037642437,4.8225328e-8,0.0067960597,0.0014226165,0.0021822029],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964689,0.001416722,0.0005630625,0.0006574726,0.00019570872,0.00069811323],"domain_scores_gemma":[0.998399,0.000062827705,0.00025525826,0.0005801561,0.0005435834,0.0001591278],"candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006824098,0.0003140485,0.00039707997,0.00019010945,0.0029988317,0.0007872801,0.001325013,0.0002847815,0.06261345],"category_scores_gemma":[0.0010420078,0.00033663696,0.00016068335,0.000679994,0.0004529693,0.0003609763,0.0017078747,0.00072506745,0.11199746],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0011420118,0.00019831087,0.000014720605,0.0002548653,0.00038511335,0.000066304674,0.0029989544,0.000026579295,0.27980322,0.008437902,0.64186305,0.06480897],"study_design_scores_gemma":[0.001387831,0.0006893151,0.0018159805,0.000065020824,0.00007196588,0.00024515676,0.00053881266,0.00025433337,0.012060375,0.00003831366,0.9824763,0.00035657597],"about_ca_topic_score_codex":0.000017861767,"about_ca_topic_score_gemma":9.347865e-8,"teacher_disagreement_score":0.4308136,"about_ca_system_score_codex":0.00011699201,"about_ca_system_score_gemma":0.0000136192175,"threshold_uncertainty_score":0.99990857},"labels":[],"label_agreement":null},{"id":"W6931227660","doi":"10.5281/zenodo.3867326","title":"Sardoblaniulus annae Manfredi 1956","year":2017,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"BC Research (Canada)","funders":"","keywords":"Habitat; Distribution (mathematics); Vegetation (pathology); Natural (archaeology)","score_opus":0.03199165943208378,"score_gpt":0.2514038981088926,"score_spread":0.2194122386768088,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931227660","genre_codex":"other","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.3440933,0.0008773411,0.0020680784,0.004113714,0.0011749618,0.0008018181,0.00016267077,0.0015162516,0.64519185],"genre_scores_gemma":[0.98955464,0.00012064434,0.000043287284,0.00009040458,0.00009652196,3.8071168e-8,0.0013768724,0.0005278832,0.008189712],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99877954,0.000306804,0.00021051677,0.00027970714,0.000071043316,0.0003524006],"domain_scores_gemma":[0.99870104,0.000016758422,0.00016516297,0.0007982097,0.0002816049,0.000037251673],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00061649457,0.00012239488,0.00014177828,0.00013456914,0.005542656,0.0005983981,0.0011931525,0.00012434169,0.015479764],"category_scores_gemma":[0.0007488546,0.00012291592,0.00006144863,0.00007661337,0.0002850551,0.00035034172,0.0009496336,0.0002634341,0.04432957],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038031777,0.0001208836,0.000017266562,0.000037138157,0.00014531457,0.000022898823,0.0011302336,0.0000040625455,0.3236914,0.009499066,0.40683335,0.25811806],"study_design_scores_gemma":[0.00074024516,0.00016237357,0.005585742,0.000020560412,0.000013099239,0.00016659804,0.00013872492,0.000011252064,0.030150648,0.00015764273,0.9627106,0.0001425043],"about_ca_topic_score_codex":0.000032398166,"about_ca_topic_score_gemma":3.2155373e-7,"teacher_disagreement_score":0.6454613,"about_ca_system_score_codex":0.00006118264,"about_ca_system_score_gemma":0.000003642163,"threshold_uncertainty_score":0.995752},"labels":[],"label_agreement":null},{"id":"W6931259267","doi":"10.5281/zenodo.5043249","title":"pysal/spreg: Release v1.2.3","year":2021,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Tellabs (Canada)","funders":"","keywords":"Regression analysis; Regression; Linear regression; Python (programming language)","score_opus":0.02129441487630768,"score_gpt":0.23175359150228955,"score_spread":0.21045917662598188,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931259267","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00057945197,0.0076120268,0.0007058939,0.000642738,0.0008165226,0.00070226286,0.00013306693,0.011551554,0.9772565],"genre_scores_gemma":[0.011559155,0.0022073442,0.00012236543,0.00028014972,0.00042062663,1.7556947e-7,0.021127319,0.045190122,0.9190927],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99791163,0.0007993114,0.00028726595,0.00048668697,0.00009943027,0.00041569484],"domain_scores_gemma":[0.9987416,0.000025666179,0.00021086016,0.00072125526,0.00025115066,0.000049445345],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00035699393,0.0002459345,0.0002899971,0.00040474377,0.00048304125,0.00024175446,0.00079074793,0.00042103822,0.0734519],"category_scores_gemma":[0.00053471804,0.00026056124,0.00011017549,0.00032897238,0.00020856752,0.00006984655,0.0008353529,0.0005196488,0.019789508],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007531459,0.00007961872,2.6329747e-7,0.00009298243,0.00017835907,0.000023332683,0.00019021954,0.000001051507,0.03866573,0.0012404601,0.92100483,0.038447816],"study_design_scores_gemma":[0.0006376015,0.00011358624,0.00004085567,0.0001925606,0.000034553283,0.00021453513,0.00011976074,0.000002910095,0.00660009,0.000020085392,0.99175435,0.00026911538],"about_ca_topic_score_codex":0.000047901343,"about_ca_topic_score_gemma":7.6855423e-7,"teacher_disagreement_score":0.0707495,"about_ca_system_score_codex":0.00009650531,"about_ca_system_score_gemma":0.000010668282,"threshold_uncertainty_score":0.9999847},"labels":[],"label_agreement":null},{"id":"W6931305457","doi":"10.5281/zenodo.4818242","title":"Spinatrypa mariaetheresiae Halamski 2013, n. sp.","year":2013,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Outcrop; Sensu; Paleozoic; Honour","score_opus":0.016985191424184712,"score_gpt":0.21702355698104936,"score_spread":0.20003836555686466,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931305457","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.60533285,0.0023813022,0.0032465074,0.008876714,0.0009548732,0.0019802202,0.00007717325,0.0024336944,0.37471664],"genre_scores_gemma":[0.9836466,0.00021855462,0.000113613045,0.00020427389,0.00009199752,1.7980712e-7,0.00198295,0.00084603607,0.0128958365],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.998413,0.0005265554,0.00027403882,0.00029922632,0.000077842196,0.00040932462],"domain_scores_gemma":[0.99896157,0.000029343739,0.00010777749,0.00044708667,0.00040900108,0.000045202192],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00043186624,0.00014804651,0.00015427962,0.00019434179,0.0016065431,0.00033879653,0.0006987945,0.00015587207,0.09586575],"category_scores_gemma":[0.00031006968,0.00014275874,0.000065019034,0.0002529293,0.00018639205,0.00037098,0.0005795668,0.00031325014,0.16599298],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00008969886,0.00008854207,0.0000055018877,0.000023866609,0.00007678765,0.000003370842,0.00044626786,0.0000053598555,0.29424563,0.0035039834,0.57276994,0.12874107],"study_design_scores_gemma":[0.00064078206,0.00019620064,0.0031969182,0.000020992371,0.000011342882,0.0001465919,0.00026384223,0.000024993516,0.021059657,0.00031822515,0.9739505,0.00016996286],"about_ca_topic_score_codex":0.00010881405,"about_ca_topic_score_gemma":3.144902e-7,"teacher_disagreement_score":0.40118057,"about_ca_system_score_codex":0.0000733803,"about_ca_system_score_gemma":0.0000039167944,"threshold_uncertainty_score":0.9996932},"labels":[],"label_agreement":null},{"id":"W6931365800","doi":"10.5281/zenodo.2529833","title":"CamDavidsonPilon/lifelines: v0.16.0","year":2019,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Bell (Canada)","funders":"","keywords":"Decimal; Python (programming language); Pairwise comparison; Software; Residual","score_opus":0.020645020785906763,"score_gpt":0.23306016863274837,"score_spread":0.2124151478468416,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931365800","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00026664694,0.0021732047,0.00071976386,0.00046412006,0.0008763813,0.000759742,0.00027087773,0.0016183213,0.99285096],"genre_scores_gemma":[0.006734389,0.00049297936,0.000031289663,0.00014760473,0.00039535738,8.186254e-8,0.01222316,0.0071976827,0.9727774],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99803376,0.00059343694,0.0003265535,0.00048591476,0.00011125938,0.00044909405],"domain_scores_gemma":[0.9986428,0.000029825298,0.00025997782,0.00076540146,0.00026122612,0.00004076868],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00045990318,0.00027846193,0.00032820526,0.00051911775,0.0008325343,0.000231176,0.0010182731,0.0004585228,0.08798838],"category_scores_gemma":[0.00041382277,0.0002787061,0.000107797954,0.0002814019,0.00019220458,0.00010310445,0.0007525966,0.00050764834,0.23828359],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000100653626,0.000061010764,4.3989016e-7,0.00009079033,0.00016160929,0.0000040815808,0.00019758247,0.0000012640571,0.01340913,0.0008838849,0.9478949,0.037194658],"study_design_scores_gemma":[0.0008124316,0.00018617843,0.000014491642,0.00013434318,0.000036465502,0.00013163965,0.00014914515,0.0000025274499,0.002723902,0.000019449688,0.9954886,0.00030084891],"about_ca_topic_score_codex":0.00008600556,"about_ca_topic_score_gemma":8.223957e-7,"teacher_disagreement_score":0.15029521,"about_ca_system_score_codex":0.00014587531,"about_ca_system_score_gemma":0.000009989925,"threshold_uncertainty_score":0.9999665},"labels":[],"label_agreement":null},{"id":"W6931365870","doi":"10.5281/zenodo.4494452","title":"Udalia primaeva Whalen & Carter in Carter, Whalen & Guex 1998","year":2020,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Field (mathematics); State (computer science); Theme (computing); Order (exchange); Context (archaeology)","score_opus":0.029439798689813983,"score_gpt":0.22681050238500425,"score_spread":0.19737070369519027,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931365870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8890285,0.0018180081,0.001069993,0.008749637,0.00055057043,0.0013805277,0.00018129968,0.0014118867,0.09580956],"genre_scores_gemma":[0.9955321,0.00014566106,0.000030068431,0.0004693213,0.00008679517,1.0541426e-7,0.001892898,0.0005011777,0.0013418987],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99815017,0.00063372357,0.00034364033,0.00037579154,0.00009024966,0.00040640973],"domain_scores_gemma":[0.9993325,0.000026718548,0.00009694242,0.00032794997,0.00015808217,0.00005779422],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0004393726,0.00015894402,0.00020694107,0.00017532644,0.0007086488,0.0001970947,0.0006570649,0.00014356819,0.008344496],"category_scores_gemma":[0.00030437205,0.00016413131,0.00006369113,0.00036629353,0.00013755221,0.00032730185,0.0005323377,0.00038354003,0.035901904],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006820379,0.00016555873,0.000054830845,0.00010915977,0.00012352539,0.00004241366,0.0113096265,0.000025956992,0.6389657,0.0011805926,0.24573424,0.1016063],"study_design_scores_gemma":[0.0011205735,0.00029440806,0.0017763443,0.00003149336,0.000013704491,0.0000762235,0.0005249332,0.000056972738,0.020489123,0.000026609128,0.97540724,0.0001823923],"about_ca_topic_score_codex":0.000033272736,"about_ca_topic_score_gemma":8.602476e-7,"teacher_disagreement_score":0.72967297,"about_ca_system_score_codex":0.00009526356,"about_ca_system_score_gemma":0.0000069846124,"threshold_uncertainty_score":0.992562},"labels":[],"label_agreement":null},{"id":"W6931448480","doi":"10.5281/zenodo.3560306","title":"Reproducibility Package for \"Smartphone apps for the treatment of mental disorders: a systematic review\" (Final version)","year":2019,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Software; Code (set theory); Software package; Measure (data warehouse); Reproducibility; Table (database)","score_opus":0.025768730908978566,"score_gpt":0.2502882505559393,"score_spread":0.2245195196469607,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931448480","genre_codex":"review","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0024880543,0.45260683,0.015983941,0.009939006,0.005736975,0.13033278,0.014453086,0.003142064,0.36531726],"genre_scores_gemma":[0.0057861954,0.048347723,0.00014223366,0.00016414878,0.00019835918,0.0000159433,0.029034061,0.005795844,0.9105155],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99808973,0.00054069085,0.00044318094,0.0005849933,0.00008144649,0.0002599564],"domain_scores_gemma":[0.99766666,0.00015458121,0.00043788966,0.0015148061,0.0002086413,0.000017413113],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.001319283,0.0002119379,0.0005265832,0.00014289825,0.0006997115,0.000051579493,0.00059082906,0.00015346424,0.0057749366],"category_scores_gemma":[0.0011177037,0.00015027617,0.00023520486,0.00015071656,0.00016483129,0.000052198207,0.00017622398,0.00009938565,0.004662671],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0005777527,0.00034941273,3.0301507e-7,0.025810748,0.00066175766,2.2411662e-7,0.00062473933,3.9914883e-7,0.0065636877,0.0003069447,0.95144546,0.013658544],"study_design_scores_gemma":[0.001465399,0.001010831,0.000007929204,0.003933442,0.00032535486,0.000015987118,0.00023268495,0.000005870069,0.0027695554,0.000013203619,0.9900725,0.00014723426],"about_ca_topic_score_codex":0.000025145726,"about_ca_topic_score_gemma":0.0000011053584,"teacher_disagreement_score":0.54519826,"about_ca_system_score_codex":0.00013744553,"about_ca_system_score_gemma":0.000009132859,"threshold_uncertainty_score":0.9961123},"labels":[],"label_agreement":null},{"id":"W6931565692","doi":"10.5281/zenodo.7747046","title":"Diporodrilidae Bouche 1970","year":2023,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of New Brunswick","funders":"","keywords":"Subspecies; Mediterranean Islands; Lumbricidae; Mediterranean climate; Sister","score_opus":0.029314089052653133,"score_gpt":0.2420858741475802,"score_spread":0.21277178509492706,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931565692","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.72937196,0.00073866517,0.0009909254,0.00322913,0.00088151515,0.0008236135,0.00013520788,0.0052912324,0.25853777],"genre_scores_gemma":[0.9814876,0.00017011033,0.000017788403,0.00010137656,0.00007099644,6.2238435e-8,0.0051264805,0.00069564546,0.012329964],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99863654,0.00041787652,0.00022258627,0.00026819418,0.00007318664,0.00038159566],"domain_scores_gemma":[0.99926,0.000037591533,0.000072875555,0.00037366568,0.00022340273,0.000032454096],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00074428244,0.000110496396,0.00012371794,0.00027744647,0.0019205129,0.00018834135,0.000567384,0.00011245015,0.018674463],"category_scores_gemma":[0.00057105545,0.00011111302,0.000056783003,0.0005917684,0.00014890908,0.00018449704,0.0006224556,0.00024089827,0.14188057],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00014296178,0.00004897837,0.0000036290191,0.00002440933,0.00007396534,0.000010745007,0.0012054252,0.0000150740625,0.4333762,0.0034468735,0.45723265,0.1044191],"study_design_scores_gemma":[0.00048418544,0.00012554448,0.0015622105,0.0000142420595,0.000009832016,0.00009236646,0.0003102302,0.000025633264,0.04100292,0.00012666284,0.95612234,0.0001238325],"about_ca_topic_score_codex":0.000008907989,"about_ca_topic_score_gemma":1.14886724e-7,"teacher_disagreement_score":0.49888968,"about_ca_system_score_codex":0.00005790571,"about_ca_system_score_gemma":0.0000035025612,"threshold_uncertainty_score":0.99937886},"labels":[],"label_agreement":null},{"id":"W6931648056","doi":"10.5683/sp3/pdkkyw","title":"Introduction to the Portage Network","year":2017,"lang":"en","type":"dataset","venue":"Borealis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Queen's University","funders":"","keywords":"Terminal (telecommunication); Scope (computer science); Work (physics); Component (thermodynamics); Troubleshooting","score_opus":0.00953522813072507,"score_gpt":0.25442889672606156,"score_spread":0.24489366859533648,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931648056","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000014507996,0.0010738685,0.00001716652,0.0070837033,0.0025465954,0.00032621555,0.98861116,0.000029199753,0.00029757505],"genre_scores_gemma":[0.000009982145,0.00035076457,0.0000043928444,0.00043302344,0.0033282049,0.00006144798,0.99073684,0.000011431471,0.0050639207],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989355,0.00021045124,0.000253107,0.00026296373,0.000038131424,0.00029983526],"domain_scores_gemma":[0.9979301,0.00005019668,0.00036384142,0.001581929,0.000061002884,0.00001291138],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0005681781,0.00019152198,0.00024789842,0.00006503618,0.00055547757,0.000056947363,0.0006399205,0.00041448278,0.00074446923],"category_scores_gemma":[0.00040886205,0.00012898933,0.0000932497,0.00004737723,0.00008411666,0.00006165351,0.00014452804,0.0004073769,0.0026841054],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00012661057,0.00001082041,9.990861e-7,0.000008635969,0.00011236392,0.0000044032167,0.000024720175,0.0000108837985,0.00020505904,0.000041323296,0.9963818,0.0030723542],"study_design_scores_gemma":[0.00012461504,0.00006224251,0.0006034366,0.000023645802,0.000086195236,0.000038737922,0.000009282234,7.3429476e-8,0.000417018,0.000020013966,0.99845994,0.00015479869],"about_ca_topic_score_codex":0.008366008,"about_ca_topic_score_gemma":0.005745766,"teacher_disagreement_score":0.00665068,"about_ca_system_score_codex":0.00003085308,"about_ca_system_score_gemma":0.00007298819,"threshold_uncertainty_score":0.9982374},"labels":[],"label_agreement":null},{"id":"W6931756900","doi":"10.5683/sp3/0ffgwu","title":"General Social Survey, Cycle 24, 2010 [Canada]: Time-Stress and Well-Being, Episode File [version 5]","year":2011,"lang":"en","type":"dataset","venue":"Borealis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Statistics Canada","funders":"","keywords":"General Social Survey; Variety (cybernetics); Time-use survey; Survey data collection; Work (physics); Order (exchange); Time budget","score_opus":0.0074352478172963424,"score_gpt":0.20781130087661046,"score_spread":0.2003760530593141,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931756900","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.0018399156,0.0005027753,9.643102e-7,0.000101525875,0.0006500269,0.00017658013,0.9957091,0.000028042683,0.0009910692],"genre_scores_gemma":[0.000043755004,0.00036963823,0.000008083587,0.00016172581,0.0001411834,0.000019402507,0.98947144,0.000022709282,0.009762079],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99819916,0.00059235375,0.00035441035,0.00036417,0.00007236664,0.00041750586],"domain_scores_gemma":[0.9990028,0.00017422876,0.00028136268,0.00042022404,0.00008930303,0.000032066007],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00030044885,0.00032820183,0.00044965904,0.00012414636,0.00038542523,0.000026786842,0.00035443233,0.00083593064,0.010811205],"category_scores_gemma":[0.0001132828,0.00031637878,0.00008360159,0.000064953325,0.000177205,0.00009130308,0.00021168467,0.00047797817,0.0005153525],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00024734074,0.000035253444,0.000056222507,0.000038133865,0.00015204427,0.000015318285,0.000055566652,2.1745258e-7,0.0003152693,0.0000054965894,0.99868524,0.00039389712],"study_design_scores_gemma":[0.00047671338,0.000055521632,0.014956725,0.000042942254,0.00008266598,0.000018704548,0.000011560501,0.0000018220611,0.0032486226,0.000015507292,0.98074234,0.00034689714],"about_ca_topic_score_codex":0.9294986,"about_ca_topic_score_gemma":0.75057065,"teacher_disagreement_score":0.17892796,"about_ca_system_score_codex":0.000074335454,"about_ca_system_score_gemma":0.00027842223,"threshold_uncertainty_score":0.99992883},"labels":[],"label_agreement":null},{"id":"W6931776799","doi":"10.5683/sp3/cile8k","title":"Razorback Mountain (West) British Columbia. 1:50,000. Map Sheet 092N10, ed. 1, 1967","year":2022,"lang":"en","type":"dataset","venue":"Borealis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Georeference; General partnership; Raster graphics; Natural (archaeology); Aerial photography; Geographic information system; Topographic map (neuroanatomy); Viewshed analysis; Orthophoto","score_opus":0.007601964458113421,"score_gpt":0.22470782930738137,"score_spread":0.21710586484926794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931776799","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00066184724,0.008118963,0.0000023014536,0.00020800813,0.0017071516,0.00069823227,0.9878101,0.00014636574,0.000647074],"genre_scores_gemma":[0.00002796222,0.0040503154,0.000009509107,0.00074554025,0.00021124922,0.00032096554,0.98019624,0.00006681084,0.014371424],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9964831,0.0008975755,0.0008629419,0.0007609325,0.00016216257,0.0008333021],"domain_scores_gemma":[0.9977567,0.00023814531,0.0005008184,0.0013331709,0.00011901427,0.000052112922],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00076953537,0.0004328634,0.0008400604,0.00017533217,0.00075813435,0.00034448178,0.0010757096,0.0011278385,0.17536713],"category_scores_gemma":[0.00022221441,0.00067366794,0.0003174203,0.00018622838,0.00028305865,0.00019431148,0.0005438689,0.0012915102,0.0011152404],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00019394659,0.0001614907,0.000043378,0.00013221042,0.00037510978,0.00016537448,0.000039711438,0.0000027777037,0.0004603288,0.00000944246,0.99634606,0.0020702023],"study_design_scores_gemma":[0.0012120007,0.00025235262,0.0015466715,0.00010770742,0.00022064435,0.0004388378,0.00012592519,3.3831347e-7,0.00013113732,0.000053608674,0.99519587,0.00071490405],"about_ca_topic_score_codex":0.5518227,"about_ca_topic_score_gemma":0.23350973,"teacher_disagreement_score":0.31831297,"about_ca_system_score_codex":0.00029666827,"about_ca_system_score_gemma":0.00034573476,"threshold_uncertainty_score":0.9996625},"labels":[],"label_agreement":null},{"id":"W6931949295","doi":"10.5683/sp3/jhkjcs","title":"Circle of Nations House","year":2024,"lang":"en","type":"dataset","venue":"Borealis","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Carleton University","funders":"","keywords":"Sustainability; Placemaking; Work (physics); Architectural design; Documentation","score_opus":0.009634669143667396,"score_gpt":0.2488010990713383,"score_spread":0.2391664299276709,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6931949295","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00006975432,0.002897341,0.000002234928,0.00013288001,0.0004773272,0.00013056379,0.99557734,0.00006803114,0.0006445164],"genre_scores_gemma":[0.0002304602,0.00088703725,0.0000032895518,0.000035189576,0.000041793108,0.000024893405,0.99820226,0.000017661752,0.00055738195],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99928,0.00009789947,0.00029561337,0.00015601331,0.000031559448,0.00013894282],"domain_scores_gemma":[0.99923843,0.000114771516,0.00012885252,0.00044717154,0.00006419026,0.0000065971913],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00015069766,0.00012232749,0.00023031076,0.0003433955,0.000058959613,0.000010373557,0.00021835529,0.00041641912,0.00035198583],"category_scores_gemma":[0.00015467443,0.00011863096,0.00011388952,0.0001393529,0.00009190747,0.000040294784,0.000069636335,0.00026063982,0.0030298848],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000030902724,0.000033538687,3.4619478e-7,0.00013590232,0.00018161641,0.0000049479063,0.000047489008,4.386388e-7,0.003503265,0.00012308078,0.9951659,0.00077260577],"study_design_scores_gemma":[0.00015772143,0.00005004263,0.00012348019,0.00011356659,0.00013637547,0.000019859395,0.000021417774,1.1889866e-7,0.013027954,0.00007713096,0.9861609,0.00011144291],"about_ca_topic_score_codex":0.0059549045,"about_ca_topic_score_gemma":0.0022085682,"teacher_disagreement_score":0.009524689,"about_ca_system_score_codex":0.00002338923,"about_ca_system_score_gemma":0.00012221983,"threshold_uncertainty_score":0.99774635},"labels":[],"label_agreement":null},{"id":"W6932029079","doi":"10.5281/zenodo.6533508","title":"Pepsis completa Smith 1855","year":2022,"lang":"en","type":"article","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Willow Biosciences (Canada)","funders":"","keywords":"Spider; Base (topology); Natural (archaeology)","score_opus":0.029596018751973967,"score_gpt":0.22696681055820758,"score_spread":0.19737079180623363,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6932029079","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.6496942,0.0029332524,0.0031274052,0.005504268,0.0012419166,0.0014619253,0.0006143578,0.0028847686,0.33253786],"genre_scores_gemma":[0.98986155,0.000054116124,0.000032191372,0.00019281871,0.00003508691,1.185057e-7,0.0035245887,0.0005604933,0.0057390197],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99822223,0.000888543,0.00021841672,0.0002625006,0.000096811964,0.0003114671],"domain_scores_gemma":[0.9993061,0.000030822306,0.00009613107,0.00036387666,0.00017604302,0.000027016842],"candidate_categories":["sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00070304057,0.00010387519,0.0001292147,0.00021415082,0.0047201617,0.0001472878,0.00075637107,0.000045348097,0.07918921],"category_scores_gemma":[0.00020707595,0.00011403583,0.000059191672,0.0003512388,0.0001358734,0.00013088813,0.0013167687,0.00036595773,0.01865835],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042247755,0.00021298365,0.00000804921,0.00002834864,0.00014311995,0.0000132424875,0.0020727846,0.000092161004,0.25063485,0.007997637,0.6417125,0.09666183],"study_design_scores_gemma":[0.0006509243,0.0002795552,0.0007669906,0.0000050868416,0.000012953816,0.0003126761,0.0006972265,0.000031320786,0.0062452,0.00007151452,0.9907948,0.00013178389],"about_ca_topic_score_codex":0.000019685582,"about_ca_topic_score_gemma":7.909858e-8,"teacher_disagreement_score":0.34908226,"about_ca_system_score_codex":0.00013294311,"about_ca_system_score_gemma":0.0000055226055,"threshold_uncertainty_score":0.99657553},"labels":[],"label_agreement":null},{"id":"W6932110043","doi":"10.5405190/foo.bar","title":"DOWNLOAD [epub]] The Viscount Who Loved Me (Bridgertons, #2) By Julia Quinn pdf Download","year":2024,"lang":"en","type":"other","venue":"Zenodo (CERN European Organization for Nuclear Research)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Download; Popularity; Plot (graphics); Canadian literature; The Internet; Performance art; Web site","score_opus":0.011568395816715503,"score_gpt":0.2227601651826409,"score_spread":0.2111917693659254,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6932110043","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00023134393,0.014299596,0.00023598144,0.0030912522,0.0010323032,0.0011162291,0.0019322496,0.0016143249,0.97644675],"genre_scores_gemma":[0.0028038137,0.0021952186,0.000006442412,0.0003870773,0.00020540626,4.3716386e-7,0.021748723,0.0034441566,0.9692087],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9970494,0.0009703585,0.00046780508,0.0006875182,0.00019230244,0.0006326536],"domain_scores_gemma":[0.9984375,0.000044585882,0.00027611305,0.00095757726,0.00022534947,0.000058873626],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008503542,0.0004172648,0.00040029173,0.00042438315,0.0011683538,0.0006986734,0.001488488,0.0004925702,0.17412254],"category_scores_gemma":[0.0003423841,0.00033042647,0.00016634088,0.0004765494,0.00047796435,0.00013979846,0.0010963057,0.00096639147,0.50496924],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001317955,0.00006477524,1.0432049e-7,0.00010772734,0.0003811391,0.000010033413,0.00047311978,6.325234e-7,0.04929028,0.0006053951,0.9347926,0.014142405],"study_design_scores_gemma":[0.0005838506,0.00017750799,0.000006848741,0.0001927161,0.00009517866,0.00016624953,0.00021243209,0.0000042285637,0.0062392387,0.0000321297,0.9919128,0.00037681905],"about_ca_topic_score_codex":0.00011062674,"about_ca_topic_score_gemma":0.0000012720446,"teacher_disagreement_score":0.3308467,"about_ca_system_score_codex":0.00016977866,"about_ca_system_score_gemma":0.000015183809,"threshold_uncertainty_score":0.99991477},"labels":[],"label_agreement":null},{"id":"W6939142870","doi":"10.60692/ncqk6-ysq57","title":"Toll-like receptor 9 (-1237 T/C, -1486 T/C) and the risk of gastric cancer: a meta-analysis of genetic association studies","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Odds ratio; Confidence interval; Etiology; Genetic association; Cancer; Genotype; Ethnic group; Meta-analysis","score_opus":0.04397331965950292,"score_gpt":0.2441206535067944,"score_spread":0.2001473338472915,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939142870","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971871,0.0012738775,0.00032030023,0.00015340155,0.00027013966,0.00037487928,0.00028540657,0.000053651,0.0000812493],"genre_scores_gemma":[0.99901,0.00012482856,0.000019776293,0.000025914613,0.000007250659,0.00013038427,0.000050518283,0.0000039694196,0.0006273369],"study_design_codex":"meta_analysis","study_design_gemma":"observational","domain_scores_codex":[0.9981423,0.0006174358,0.00089013675,0.00009219956,0.00010159982,0.00015633318],"domain_scores_gemma":[0.997872,0.000218619,0.0013180852,0.00024416798,0.00033930392,0.000007804054],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015452756,0.00012606339,0.0008121244,0.0005756345,0.0001389412,0.000017021453,0.000107487416,0.00011737786,0.000055894187],"category_scores_gemma":[0.00020515034,0.00007379663,0.0003852582,0.00086966483,0.00008186725,0.00017912671,0.00005936442,0.000081515325,0.00016504325],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0012694962,0.000005650907,0.2860182,0.00067271467,0.45248732,4.218856e-7,0.25091785,0.003857291,0.0005185882,0.00026788795,0.002740696,0.001243876],"study_design_scores_gemma":[0.00769751,0.00020910219,0.5875821,0.00009221351,0.28902435,0.000015393489,0.0902233,0.0034317893,0.018178526,0.0000077396335,0.0030270068,0.0005109228],"about_ca_topic_score_codex":0.00010113163,"about_ca_topic_score_gemma":0.0000029751204,"teacher_disagreement_score":0.30156395,"about_ca_system_score_codex":0.00006773495,"about_ca_system_score_gemma":0.000026824093,"threshold_uncertainty_score":0.30093393},"labels":[],"label_agreement":null},{"id":"W6939512661","doi":"10.6084/m9.figshare.12032982","title":"Additional file 1 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"Medical Research Council","keywords":"Chemokine; Flow cytometry; Bone marrow; Monocyte; Cytokine; Myeloid cells; CCL2; Myelopoiesis","score_opus":0.014873460691353122,"score_gpt":0.21088354095256265,"score_spread":0.19601008026120953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6939512661","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026508681,0.00040679265,3.8824473e-7,0.00064479595,0.000018930934,0.000505626,0.97150683,0.00002119901,0.00038675035],"genre_scores_gemma":[0.38946328,0.0000010449622,0.0000063948487,0.00026668637,0.00001977519,0.00053284655,0.60933506,0.0000068458967,0.0003680415],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906397,0.00024424712,0.00035101498,0.00013856062,0.000054752167,0.00014744],"domain_scores_gemma":[0.9982898,0.0012517454,0.00020474468,0.00014075365,0.000100961464,0.000011969778],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008013071,0.00010627629,0.00021910982,0.000091006405,0.000037059133,0.0000053883923,0.00020098472,0.00015690915,0.85059613],"category_scores_gemma":[0.005536169,0.000085159525,0.00008147636,0.0003284916,0.000013881582,0.00009092547,0.000040254767,0.00016222756,0.00053179194],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022234711,0.00001854466,9.938964e-7,0.000084559986,0.000024784655,0.0000010845271,0.00068962335,0.000004209122,0.27483055,0.000002215438,0.72354966,0.00057140866],"study_design_scores_gemma":[0.00085162645,0.00034677004,0.00043429315,0.000758474,0.0000051762067,0.000014333373,0.0013420574,0.000003407375,0.32741565,0.0000012641585,0.66873586,0.00009105838],"about_ca_topic_score_codex":0.0000055457094,"about_ca_topic_score_gemma":0.0000014263976,"teacher_disagreement_score":0.85006434,"about_ca_system_score_codex":0.000030301155,"about_ca_system_score_gemma":0.00012240674,"threshold_uncertainty_score":0.6835287},"labels":[],"label_agreement":null},{"id":"W6957811949","doi":"10.60692/tkgaf-28a37","title":"Inhibition of IL-12 heterodimers impairs TLR9-mediated prevention of early mouse plasmacytoma cell growth","year":2023,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université de Montréal","funders":"","keywords":"Immunosurveillance; Innate immune system; Cytotoxic T cell; Innate lymphoid cell; Cancer cell; TLR3; Cancer; Receptor","score_opus":0.01645892984985296,"score_gpt":0.19698872929802064,"score_spread":0.1805297994481677,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6957811949","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9973781,0.000005835399,0.0006613761,0.000012238917,0.000333654,0.00045628712,0.0001785965,0.00022203317,0.00075187604],"genre_scores_gemma":[0.998758,0.0000016361541,0.000016044534,0.000008800557,0.000010207015,0.000042660336,0.000603168,0.000011916962,0.00054752396],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982608,0.00024461778,0.0010187916,0.00011982782,0.000106517786,0.0002494664],"domain_scores_gemma":[0.9986649,0.000026042188,0.00079820165,0.00025251825,0.00023816653,0.000020154514],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00054043235,0.00017060197,0.00031413574,0.0006741519,0.00009099501,0.000019371188,0.00011393266,0.0002637002,0.00003868364],"category_scores_gemma":[0.000039283263,0.00015303973,0.00014513484,0.00036757597,0.000069555455,0.0007285845,0.000054662807,0.0001158976,0.002047795],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0056586727,0.000056996392,0.11015369,0.0051886137,0.00080043136,0.0000074175346,0.35174567,0.00039998078,0.5225207,0.00032896013,0.001753168,0.0013857055],"study_design_scores_gemma":[0.002683529,0.00038395508,0.045688104,0.00019542866,0.00004498784,0.00001476082,0.008517239,0.00014744075,0.942058,0.000001437291,0.00008877982,0.00017629474],"about_ca_topic_score_codex":0.000030390804,"about_ca_topic_score_gemma":2.7443957e-7,"teacher_disagreement_score":0.41953734,"about_ca_system_score_codex":0.000056208446,"about_ca_system_score_gemma":0.000051410316,"threshold_uncertainty_score":0.9987292},"labels":[],"label_agreement":null},{"id":"W6958471225","doi":"10.6084/m9.figshare.14121487","title":"Additional file 1 of Lack of CD34 delays bacterial endotoxin-induced lung inflammation","year":2021,"lang":"en","type":"article","venue":"Open MIND","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Cytokine; Lung; Inflammation; Table (database); Lung disease","score_opus":0.03491130702731761,"score_gpt":0.28452170075438543,"score_spread":0.24961039372706784,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958471225","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.8966962,0.00004709352,0.0000084111425,0.00007713804,0.00021126709,0.00028366272,0.08073346,0.0000019152455,0.021940826],"genre_scores_gemma":[0.5279211,0.000013754533,0.0033431842,0.000022059156,0.00014236463,0.00019605813,0.44458055,0.000023302044,0.023757651],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911845,0.00019131298,0.00038874944,0.0001442663,0.00003523389,0.00012198271],"domain_scores_gemma":[0.99878705,0.0005474862,0.00027398867,0.00019877679,0.00018424346,0.000008488199],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000122457,0.000084106876,0.00021564394,0.00005690824,0.00005515141,0.000015465,0.00017011537,0.00015690863,0.9365869],"category_scores_gemma":[0.00055253145,0.00008492462,0.00006615537,0.000103810264,0.000050503953,0.0002207726,0.00012890273,0.00009077703,0.001298459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021860756,0.0000349959,0.0000030159774,0.0000075229163,0.000076054945,0.0000025253548,0.00017524224,0.0000012009846,0.77790326,0.000026568174,0.20318595,0.01836504],"study_design_scores_gemma":[0.00044758967,0.000041821848,0.000641527,0.000075771284,0.000012707205,0.000017952456,0.00008535935,0.0000057894667,0.6227327,0.000010259695,0.37587377,0.000054743978],"about_ca_topic_score_codex":0.00001158509,"about_ca_topic_score_gemma":0.000018367451,"teacher_disagreement_score":0.9352885,"about_ca_system_score_codex":0.00001914964,"about_ca_system_score_gemma":0.00031038432,"threshold_uncertainty_score":0.9994792},"labels":[],"label_agreement":null},{"id":"W6958906849","doi":"10.6084/m9.figshare.4456568.v2","title":"Additional file 1 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; MEDLINE; Systemic inflammatory response syndrome; Inflammation; Disease","score_opus":0.020577387859050653,"score_gpt":0.2755605887891766,"score_spread":0.25498320093012594,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6958906849","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00020529557,0.010405544,5.2528023e-8,0.00006419864,0.00004884481,0.00023481756,0.98834854,0.000020891624,0.00067179615],"genre_scores_gemma":[0.00019027284,0.00030078524,0.000045488363,0.00033780915,0.000029464845,0.00084256654,0.99732924,0.000010515139,0.0009138611],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9989795,0.0002124442,0.00042371746,0.00016198681,0.000044132958,0.00017821862],"domain_scores_gemma":[0.9982159,0.001249439,0.00019479389,0.00018496257,0.00014174802,0.000013117648],"candidate_categories":["metaresearch","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000057700276,0.00011061272,0.00028298952,0.00009475225,0.000042607633,0.000005196211,0.00011559648,0.00015971866,0.9975657],"category_scores_gemma":[0.00845602,0.00010007009,0.000087253655,0.00024912236,0.000017456166,0.00013211893,0.00008700133,0.00018689051,0.0056862915],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00007216891,0.000021363967,0.0000011800519,0.0019852235,0.000024889685,0.000024585743,0.00003535489,1.8342065e-7,0.0016708608,0.000001316763,0.98998165,0.0061812247],"study_design_scores_gemma":[0.00025042275,0.000037879097,0.00042138383,0.24695137,0.000008497779,0.000046012494,0.000039381535,0.0000011392524,0.034865662,0.000004363257,0.7172381,0.00013576268],"about_ca_topic_score_codex":0.0000010158659,"about_ca_topic_score_gemma":0.000024508136,"teacher_disagreement_score":0.9918794,"about_ca_system_score_codex":0.000032167685,"about_ca_system_score_gemma":0.0007871819,"threshold_uncertainty_score":0.99989617},"labels":[],"label_agreement":null},{"id":"W6976025171","doi":"10.60692/qg4eb-nj135","title":"Potential mediators of in ovo delivered double stranded (ds) RNA-induced innate response against low pathogenic avian influenza virus infection","year":2018,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph; University of Calgary","funders":"","keywords":"In ovo; TLR3; Interferon; Innate immune system; RNA silencing; Virus; Influenza A virus subtype H5N1; Interferon type I; Macrophage","score_opus":0.016789019465094864,"score_gpt":0.2232258006999267,"score_spread":0.20643678123483183,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976025171","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711883,0.000010081243,0.0007317023,0.00001211181,0.0010477616,0.00057622185,0.00005445095,0.00012621915,0.00032259096],"genre_scores_gemma":[0.9996733,0.0000018953563,0.00001034838,0.00007084908,0.000042327967,0.000049847655,0.0000919163,0.000014066561,0.00004543029],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.997546,0.00053957704,0.0012503184,0.0001818067,0.00012137995,0.00036091695],"domain_scores_gemma":[0.9985259,0.000018667966,0.0006651322,0.00038656962,0.00037010893,0.00003362328],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011546813,0.0002471281,0.00038068468,0.00085139106,0.00018272824,0.000049101793,0.0001784357,0.0004715618,0.000075577635],"category_scores_gemma":[0.000065079024,0.00022485261,0.00012732994,0.0004278148,0.00009852536,0.00094830024,0.00006471343,0.00022136024,0.0014336695],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.043026764,0.00003603531,0.050686188,0.00047569798,0.00038459475,0.000013267605,0.109931655,0.00037549954,0.7898253,0.00006612879,0.000057133082,0.005121692],"study_design_scores_gemma":[0.009839244,0.00034686923,0.24755102,0.00028231888,0.000043610173,0.000044996705,0.002605416,0.00032191584,0.738429,0.0000010268863,0.00020691029,0.00032765899],"about_ca_topic_score_codex":0.00015627944,"about_ca_topic_score_gemma":0.000008133536,"teacher_disagreement_score":0.19686483,"about_ca_system_score_codex":0.00018542411,"about_ca_system_score_gemma":0.00014580818,"threshold_uncertainty_score":0.9993438},"labels":[],"label_agreement":null},{"id":"W6976599358","doi":"10.60692/hfx80-y9c40","title":"Toll-like receptor 9 and 4 gene polymorphisms in susceptibility and severity of malaria: a meta-analysis of genetic association studies","year":2021,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Malaria; TLR9; Allele; Genetic association; Genetic predisposition; Plasmodium falciparum; Allele frequency; Toll-like receptor","score_opus":0.04116136619377514,"score_gpt":0.2351793782621878,"score_spread":0.19401801206841265,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976599358","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9981832,0.0010709248,0.00020720072,0.000086569285,0.000110211964,0.00017334816,0.00012110061,0.000012511886,0.0000349433],"genre_scores_gemma":[0.9995344,0.00001429756,0.0001544617,0.000026523348,0.0000026980329,0.000019409335,0.00006199687,0.0000024861938,0.0001836752],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99842453,0.00042403184,0.0008408637,0.00012511293,0.00006539785,0.00012009261],"domain_scores_gemma":[0.99883306,0.000066352884,0.00056729297,0.00021355167,0.00031017896,0.000009547826],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008250525,0.00011161223,0.00077392336,0.00030878562,0.000048187387,0.00001354186,0.000043189455,0.00017243791,0.0000641779],"category_scores_gemma":[0.00013646923,0.000091869755,0.00016101262,0.00034328597,0.000050199844,0.000232962,0.00006642642,0.00006729167,0.0000133934045],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00026955185,0.000010768219,0.8769242,0.00035432662,0.047624648,0.0000012513456,0.0655099,0.00006840792,0.008896381,0.00007986272,0.00003948225,0.00022118735],"study_design_scores_gemma":[0.0008147745,0.000042860076,0.9137933,0.000016874737,0.011910626,0.000014594124,0.007880125,0.00009026735,0.06527071,0.000001408224,0.00004991651,0.000114522605],"about_ca_topic_score_codex":0.000035770365,"about_ca_topic_score_gemma":0.000008247084,"teacher_disagreement_score":0.057629775,"about_ca_system_score_codex":0.0000764672,"about_ca_system_score_gemma":0.000033128967,"threshold_uncertainty_score":0.37463397},"labels":[],"label_agreement":null},{"id":"W6976915514","doi":"10.60692/20em7-ycy81","title":"Characterization of Innate Responses Induced by PLGA Encapsulated- and Soluble TLR Ligands In Vitro and In Vivo in Chickens","year":2017,"lang":"en","type":"article","venue":"Greater South Information System","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Guelph","funders":"","keywords":"Innate immune system; Lipopolysaccharide; In vivo; Cytokine; In vitro; TLR4; Adjuvant; Toll-like receptor; TLR3","score_opus":0.01683054940733516,"score_gpt":0.21067273933185798,"score_spread":0.19384218992452282,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6976915514","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99919116,0.000019047,0.000019977613,0.000064405365,0.00016156276,0.00031126634,0.000042971045,0.000018484354,0.00017114314],"genre_scores_gemma":[0.99974287,0.0000057751763,0.000003190363,0.000019694337,0.0000039612755,0.000028033053,0.00006221366,0.0000054449247,0.00012884471],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99885595,0.00013139333,0.0006695183,0.00011709888,0.000038592618,0.00018745594],"domain_scores_gemma":[0.9992608,0.00001419313,0.00043594648,0.0002287032,0.000048181628,0.000012174526],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006254634,0.00012942725,0.00028629907,0.0005267205,0.00010129823,0.000067520225,0.00010377312,0.00025608548,0.0000058159253],"category_scores_gemma":[0.00007194687,0.0001192553,0.00001619301,0.00009817914,0.000060397197,0.0009728309,0.000072282026,0.00014116119,0.000017929866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0013836197,0.000004100894,0.09229558,0.00012274981,0.000012702155,0.0000012909071,0.033613637,6.535145e-7,0.87209153,0.000019432935,0.0000023940559,0.00045230752],"study_design_scores_gemma":[0.0018576677,0.000031657713,0.4444131,0.00017525656,0.000003355259,0.000013416899,0.0012009953,0.00012777753,0.55204475,6.954223e-7,0.000041637315,0.000089707166],"about_ca_topic_score_codex":0.00011799749,"about_ca_topic_score_gemma":0.000004217503,"teacher_disagreement_score":0.3521175,"about_ca_system_score_codex":0.000043596694,"about_ca_system_score_gemma":0.000032135737,"threshold_uncertainty_score":0.486309},"labels":[],"label_agreement":null},{"id":"W6977117055","doi":"10.6084/m9.figshare.12032982.v1","title":"Additional file 1 of Sustained exposure to systemic endotoxin triggers chemokine induction in the brain followed by a rapid influx of leukocytes","year":2020,"lang":"en","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Chemokine; Flow cytometry; Bone marrow; Monocyte; Cytokine; Myeloid cells; CCL2; Myelopoiesis","score_opus":0.014873460691353122,"score_gpt":0.21088354095256265,"score_spread":0.19601008026120953,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6977117055","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.026508681,0.00040679265,3.8824473e-7,0.00064479595,0.000018930934,0.000505626,0.97150683,0.00002119901,0.00038675035],"genre_scores_gemma":[0.38946328,0.0000010449622,0.0000063948487,0.00026668637,0.00001977519,0.00053284655,0.60933506,0.0000068458967,0.0003680415],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99906397,0.00024424712,0.00035101498,0.00013856062,0.000054752167,0.00014744],"domain_scores_gemma":[0.9982898,0.0012517454,0.00020474468,0.00014075365,0.000100961464,0.000011969778],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008013071,0.00010627629,0.00021910982,0.000091006405,0.000037059133,0.0000053883923,0.00020098472,0.00015690915,0.85059613],"category_scores_gemma":[0.005536169,0.000085159525,0.00008147636,0.0003284916,0.000013881582,0.00009092547,0.000040254767,0.00016222756,0.00053179194],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022234711,0.00001854466,9.938964e-7,0.000084559986,0.000024784655,0.0000010845271,0.00068962335,0.000004209122,0.27483055,0.000002215438,0.72354966,0.00057140866],"study_design_scores_gemma":[0.00085162645,0.00034677004,0.00043429315,0.000758474,0.0000051762067,0.000014333373,0.0013420574,0.000003407375,0.32741565,0.0000012641585,0.66873586,0.00009105838],"about_ca_topic_score_codex":0.0000055457094,"about_ca_topic_score_gemma":0.0000014263976,"teacher_disagreement_score":0.85006434,"about_ca_system_score_codex":0.000030301155,"about_ca_system_score_gemma":0.00012240674,"threshold_uncertainty_score":0.6835287},"labels":[],"label_agreement":null},{"id":"W6980207445","doi":"","title":"Beyond inclusion: Transforming the educational governance relationships between First Nations and school districts in British Columbia","year":2005,"lang":"en","type":"dissertation","venue":"Summit (Simon Fraser University)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Context (archaeology); Government (linguistics); Subject (documents); Reflexivity; Population; Work (physics); Pretext","score_opus":0.007128883786566222,"score_gpt":0.20060908078525916,"score_spread":0.19348019699869293,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6980207445","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.97837085,0.0033282142,0.000007898849,0.001122182,0.0003624156,0.00053391367,0.00018933017,0.000031980755,0.016053215],"genre_scores_gemma":[0.9205881,0.0020463578,0.000014759294,0.000018655346,0.00007692959,0.000008556962,0.004076854,0.000018453575,0.073151335],"study_design_codex":"observational","study_design_gemma":"observational","domain_scores_codex":[0.99875087,0.00024068404,0.0003296674,0.00033349806,0.00009481604,0.0002504552],"domain_scores_gemma":[0.9986924,0.0007123233,0.00023869844,0.00020528451,0.000115308,0.000036010613],"candidate_categories":["metaepi_narrow","sts"],"consensus_categories":[],"category_scores_codex":[0.0002512705,0.00016953879,0.00025035997,0.00024012002,0.0025704321,0.000096614975,0.00035533062,0.0005751166,0.0008344336],"category_scores_gemma":[0.00033339,0.0002458182,0.00008972515,0.0007339337,0.000111639776,0.00049360923,0.000095475254,0.00087461073,0.00010184486],"study_design_candidate":"observational","study_design_consensus":"observational","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00017269515,0.00015212,0.95842993,0.0001508726,0.0002289984,0.000022265336,0.00071778276,0.000024255893,0.00007770132,0.0024621447,0.026848592,0.010712668],"study_design_scores_gemma":[0.0012461427,0.000032806973,0.5996928,0.00040304323,0.00015150261,1.6205193e-7,0.011682243,0.0000024708909,0.0003375322,0.0003810275,0.38571593,0.0003543169],"about_ca_topic_score_codex":0.005230117,"about_ca_topic_score_gemma":0.95302325,"teacher_disagreement_score":0.9477931,"about_ca_system_score_codex":0.00034169937,"about_ca_system_score_gemma":0.00039424136,"threshold_uncertainty_score":0.9999994},"labels":[],"label_agreement":null},{"id":"W6987415025","doi":"","title":"The structure of the carbohydrate backbone of core-lipid A region of the lipopolysaccharides from Proteus mirabilis wild-type strain S1959 (serotype 03) and its Ra mutant R110/1959","year":2000,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Strain (injury); Mutant; Carbohydrate; Proteus mirabilis; Bacteria; Mutation","score_opus":0.010855913622204404,"score_gpt":0.21087679812928048,"score_spread":0.20002088450707609,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6987415025","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99650514,0.0014672782,7.683952e-7,0.0007063307,0.000316879,0.00068670197,0.00008451911,0.00001004242,0.00022231495],"genre_scores_gemma":[0.99887276,0.00041979476,0.000016256583,0.00003964549,0.000028804658,0.0000062375216,0.000013089797,0.000013098548,0.00059030973],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9986324,0.0004207251,0.00046935477,0.00018601793,0.000084005565,0.00020751353],"domain_scores_gemma":[0.9986738,0.00023599123,0.00035856417,0.0005737494,0.00014680825,0.000011095968],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00022654101,0.00016186912,0.00030053532,0.000032702883,0.00020678836,0.0000085364545,0.00041958704,0.00022873239,0.0004004538],"category_scores_gemma":[0.00024547538,0.000082109706,0.000106958614,0.00024934404,0.000519979,0.0000698413,0.000092339455,0.00027494013,0.0000071984864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0008208611,0.000028055254,0.00048391448,0.00002699077,0.00013114631,4.1389745e-7,0.0011783453,0.000008809009,0.98811907,0.0006598838,0.00013110464,0.00841138],"study_design_scores_gemma":[0.0006363622,0.00015667343,0.011621564,0.00013371685,0.00007418717,0.000018344805,0.00021902034,0.00003903138,0.9824833,0.0025997374,0.0019252951,0.00009273413],"about_ca_topic_score_codex":0.00023764963,"about_ca_topic_score_gemma":0.00012096615,"teacher_disagreement_score":0.011137649,"about_ca_system_score_codex":0.000017935468,"about_ca_system_score_gemma":0.00012002311,"threshold_uncertainty_score":0.4384688},"labels":[],"label_agreement":null},{"id":"W6991614131","doi":"","title":"How Canada could help ramp up vaccine production","year":2021,"lang":"en","type":"other","venue":"Bulletin of Miscellaneous Information (Royal Gardens Kew)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Pandemic; Public health; Production (economics); Coronavirus disease 2019 (COVID-19); Global health; Plan (archaeology)","score_opus":0.005044069240383319,"score_gpt":0.17096698816499908,"score_spread":0.16592291892461578,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6991614131","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00025680632,0.0041092294,4.080883e-7,0.0017393705,0.0026075302,0.00044376106,0.0000620058,0.0000984167,0.9906825],"genre_scores_gemma":[0.001869579,0.00067850394,0.000053496078,0.0001824639,0.0001614523,0.00002067706,0.0017584204,0.0000852786,0.99519014],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985977,0.00018048323,0.00052545837,0.00023547359,0.00013841336,0.0003224878],"domain_scores_gemma":[0.9985613,0.000066966735,0.0006396335,0.00044992045,0.00025206487,0.000030087866],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00019153582,0.00033766325,0.00048923085,0.0000829984,0.000100504425,0.000039142862,0.00023086046,0.0006147579,0.30825335],"category_scores_gemma":[0.0002985053,0.00033018738,0.000119875906,0.000012231459,0.00006432195,3.17052e-7,0.000072491355,0.00039063257,0.0021984465],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00018482785,0.000021897451,0.0000015873327,0.00038638117,0.00019920754,0.000010502368,0.00006068628,0.000021048303,0.000238687,0.000012407232,0.99632424,0.0025385213],"study_design_scores_gemma":[0.00067104754,0.0000718056,0.000013070539,0.0002920115,0.00006450494,0.00021357939,0.00026170482,6.7296986e-7,0.004765651,0.000001032881,0.9933231,0.00032182608],"about_ca_topic_score_codex":0.23914996,"about_ca_topic_score_gemma":0.27985877,"teacher_disagreement_score":0.3060549,"about_ca_system_score_codex":0.00010856674,"about_ca_system_score_gemma":0.00023659809,"threshold_uncertainty_score":0.999915},"labels":[],"label_agreement":null},{"id":"W6993097268","doi":"","title":"Nod1 and Nod2 in Innate Immune Responses, Adaptive Immunity and Bacterial Infection","year":2009,"lang":"en","type":"dissertation","venue":"TSpace","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Fondation pour la Recherche Médicale; Howard Hughes Medical Institute","keywords":"NOD1; NOD2; Pattern recognition receptor; Innate immune system; Acquired immune system; Receptor; Immune system; TLR4; Nod","score_opus":0.01145385421093205,"score_gpt":0.2859110398276609,"score_spread":0.2744571856167289,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6993097268","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98856837,0.008421358,0.0000029283772,0.00010537486,0.00074104377,0.0003880263,0.000005586604,0.000056214536,0.001711078],"genre_scores_gemma":[0.9789731,0.0032471856,0.000020961708,0.000017910379,0.000036319125,0.000029932762,0.0011402491,0.00002824204,0.016506094],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.99825877,0.0006929555,0.00040514267,0.0003129753,0.000037501908,0.00029262807],"domain_scores_gemma":[0.99922144,0.00013661476,0.00028589054,0.00025209473,0.00008720367,0.000016734713],"candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005525818,0.00031883156,0.00047236282,0.000452661,0.00020263054,0.000040048348,0.00008584799,0.0008199244,0.0001309969],"category_scores_gemma":[0.0002141265,0.0003276205,0.000056362667,0.00017320532,0.00009137073,0.00018471257,0.00004356337,0.0007662595,0.000072667506],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.012013086,0.000060269685,0.0001401392,0.000056102657,0.00009046728,0.0000069029875,0.005918857,3.6441884e-7,0.9594008,0.00016714964,0.00010625284,0.022039609],"study_design_scores_gemma":[0.0026313826,0.0005570826,0.5887355,0.00046572505,0.000089784,0.0000747569,0.0019902792,0.000004526367,0.39187568,0.00011828111,0.012934258,0.0005226869],"about_ca_topic_score_codex":0.0033495147,"about_ca_topic_score_gemma":0.001406016,"teacher_disagreement_score":0.5885954,"about_ca_system_score_codex":0.00007873629,"about_ca_system_score_gemma":0.00013170135,"threshold_uncertainty_score":0.99991757},"labels":[],"label_agreement":null},{"id":"W6996298519","doi":"","title":"Revolution Within A Revolution: Québec's experiment with co-operative health care &amp; social service delivery","year":2007,"lang":"en","type":"article","venue":"AUSpace (Athabasca University)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"State (computer science); Health care; Solidarity; Action (physics); Intervention (counseling); Service (business); Health services; Discounting; Agency (philosophy); Health insurance","score_opus":0.012951165887125467,"score_gpt":0.2514400319948991,"score_spread":0.23848886610777364,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6996298519","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98207057,0.0036017604,0.0033807699,0.004634632,0.00024078623,0.00055389665,0.000024774467,0.00019087858,0.0053019077],"genre_scores_gemma":[0.983443,0.00008360476,0.0006600475,0.000376595,0.00006373581,0.0000025308407,0.00037378052,0.000022282535,0.014974396],"study_design_codex":"qualitative","study_design_gemma":"not_applicable","domain_scores_codex":[0.9985701,0.00034334208,0.00021721728,0.0003508509,0.000086328284,0.0004321847],"domain_scores_gemma":[0.99908054,0.00006739734,0.0002486419,0.00024966607,0.00030655073,0.000047215075],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003000309,0.0002311251,0.00028196265,0.00029933712,0.0009815539,0.000014978483,0.00021953892,0.00022719703,0.00024676716],"category_scores_gemma":[0.000014970724,0.00022964031,0.0000821547,0.00041571687,0.00016970166,0.00042552236,0.00008322284,0.00030777,0.00040233764],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.019296862,0.00066633604,0.009268251,0.00039755652,0.0016293464,0.00018803474,0.4650211,0.00012759284,0.36389288,0.01883261,0.11535893,0.005320493],"study_design_scores_gemma":[0.0038546203,0.0007877298,0.010299596,0.00017782819,0.00009373454,0.00008872627,0.09454314,0.0000028966704,0.07199352,0.000003850023,0.8175434,0.00061095133],"about_ca_topic_score_codex":0.018169643,"about_ca_topic_score_gemma":0.07361103,"teacher_disagreement_score":0.7021845,"about_ca_system_score_codex":0.0013537916,"about_ca_system_score_gemma":0.00086673733,"threshold_uncertainty_score":0.98836845},"labels":[],"label_agreement":null},{"id":"W6996421831","doi":"","title":"Resistance : ALJAZ : November 5, 2017 12:32pm-1:01pm AST","year":2017,"lang":"en","type":"other","venue":"Bulletin of Miscellaneous Information (Royal Gardens Kew)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Opposition (politics); Clan; Resistance (ecology); Natural disaster","score_opus":0.006831544735287632,"score_gpt":0.19260031857408164,"score_spread":0.185768773838794,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6996421831","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000042740678,0.0033321867,7.0782966e-7,0.00024607393,0.0010193264,0.00047195167,0.00016628263,0.00017957056,0.99454117],"genre_scores_gemma":[0.0005966056,0.0009299442,0.00016451375,0.00014421936,0.00012886047,0.000024811668,0.0007131079,0.000116282674,0.99718165],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99829334,0.00016562083,0.00068350957,0.0002728829,0.00013984025,0.0004447849],"domain_scores_gemma":[0.99738306,0.00011876612,0.001329317,0.0009669055,0.00016193526,0.000039989358],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003558771,0.00044445405,0.0006194485,0.0001262349,0.0002445317,0.000060602713,0.0006576562,0.0010136475,0.37479767],"category_scores_gemma":[0.0002637303,0.0004309362,0.00023729594,0.000004251841,0.00034485786,6.7093913e-7,0.00014628173,0.0004675405,0.06237597],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004266376,0.000037319944,0.000001524372,0.0003077874,0.000213195,0.00001597769,0.00011839077,0.0000056548,0.00005248147,0.00005272374,0.996478,0.00229029],"study_design_scores_gemma":[0.0010744093,0.00008737459,0.00003782703,0.0006164222,0.00008304977,0.00009090664,0.00003976816,4.5028392e-7,0.00044692264,0.0000067604674,0.9970725,0.00044356633],"about_ca_topic_score_codex":0.0024697052,"about_ca_topic_score_gemma":0.0040671933,"teacher_disagreement_score":0.3124217,"about_ca_system_score_codex":0.000054125016,"about_ca_system_score_gemma":0.00007496758,"threshold_uncertainty_score":0.9998143},"labels":[],"label_agreement":null},{"id":"W6996799020","doi":"","title":"The structure of the carbohydrate backbone of the rough type lipopolysaccharides from proteus penneri strains 12, 13, 37 and 44.: Carbohyd.Res.","year":2002,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Carbohydrate; Strain (injury); Bacteria; Proteus; Carbohydrate conformation","score_opus":0.010209905334041878,"score_gpt":0.19661643106649243,"score_spread":0.18640652573245056,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W6996799020","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9935751,0.0033504544,0.0000011740731,0.0010883834,0.00055195676,0.00039627773,0.000058002784,0.00001170956,0.0009669237],"genre_scores_gemma":[0.9980506,0.0003580004,0.000016228209,0.000049861676,0.000035086043,0.0000054275897,0.000007907838,0.000012135879,0.0014647879],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989316,0.0003247177,0.00030909549,0.00015649828,0.000065952285,0.00021214379],"domain_scores_gemma":[0.9989659,0.00013630901,0.00025116352,0.0005663734,0.00007071118,0.000009539129],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013046536,0.00014318174,0.00020635166,0.000022083152,0.0002954505,0.000015731814,0.00040969445,0.00018694259,0.00047160772],"category_scores_gemma":[0.00015453983,0.000069329726,0.00008447062,0.00015801923,0.00050433766,0.000062785555,0.00015588169,0.00030061786,0.000009479849],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000083795254,0.000016888225,0.00055439264,0.000009257174,0.00012482703,2.932638e-7,0.001466641,0.0000085446845,0.9929829,0.00063741073,0.00070069596,0.0034143205],"study_design_scores_gemma":[0.0005131095,0.00007359994,0.020269856,0.000047154077,0.000070861286,0.000008298969,0.00030463692,0.00008072533,0.97198355,0.0023025943,0.0042428067,0.000102781996],"about_ca_topic_score_codex":0.000501571,"about_ca_topic_score_gemma":0.0003776026,"teacher_disagreement_score":0.020999359,"about_ca_system_score_codex":0.000015122444,"about_ca_system_score_gemma":0.00004531644,"threshold_uncertainty_score":0.5163774},"labels":[],"label_agreement":null},{"id":"W7000377080","doi":"","title":"Evolution of the inflammatory and fibroproliferative responses during resolution and repair following ventilator induced lung injury in the rat","year":2011,"lang":"en","type":"article","venue":"Research Portal (Queen's University Belfast)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Lung; Inflammation; Inflammatory response; Resolution (logic); Fibrosis; Respiratory system; Ischemic injury; Respiratory disease","score_opus":0.015807489732165853,"score_gpt":0.2523632675800522,"score_spread":0.2365557778478863,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7000377080","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9984852,0.0002687943,0.000002973471,0.00018935688,0.000082653685,0.0004955417,0.000005504419,0.000024818326,0.00044517848],"genre_scores_gemma":[0.9987957,0.000104301136,0.000011405817,0.000004163066,0.0000100653415,0.000003836414,0.0000049181367,0.0000070176393,0.001058617],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9972431,0.0018395898,0.00022163699,0.00023543077,0.00014121932,0.0003190113],"domain_scores_gemma":[0.99927706,0.00017805364,0.00011044288,0.00029956552,0.00011311791,0.000021792508],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0015636376,0.000115714065,0.00016262647,0.00038751322,0.00066323724,0.000011014279,0.00021816455,0.00019832046,0.00002617325],"category_scores_gemma":[0.0002751436,0.0000881565,0.00008876628,0.00041276167,0.0003878052,0.0003950136,0.00030196135,0.0005576845,0.000004606096],"study_design_candidate":"observational","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.007831771,0.00016443284,0.3354593,0.00018835333,0.00026895598,0.00018481343,0.015254054,0.000002118012,0.62587297,0.013864749,0.0006835171,0.0002250029],"study_design_scores_gemma":[0.00094969023,0.00022858154,0.8938615,0.00017208743,0.00003146031,0.000021230086,0.007947818,0.000010359366,0.09590838,0.000100561556,0.0006484008,0.00011994681],"about_ca_topic_score_codex":0.00069458113,"about_ca_topic_score_gemma":0.000039712842,"teacher_disagreement_score":0.5584022,"about_ca_system_score_codex":0.00012747574,"about_ca_system_score_gemma":0.00021851635,"threshold_uncertainty_score":0.51011515},"labels":[],"label_agreement":null},{"id":"W7000488253","doi":"","title":"Evasion of toll-like receptors by flagellated bacteria.","year":2005,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Receptor; Evasion (ethics); Immune system; Signal transduction","score_opus":0.006053301880186081,"score_gpt":0.21035366078418605,"score_spread":0.20430035890399997,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7000488253","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99057007,0.0004346939,0.000039130035,0.00047630043,0.0006291098,0.00014533206,0.0000047752133,0.000044712084,0.007655876],"genre_scores_gemma":[0.98156863,0.00014308753,0.0001962157,0.00008231809,0.000023008812,0.0000065876106,0.00018991772,0.00001007428,0.017780127],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992762,0.00014734488,0.0002601025,0.00012073075,0.000026147634,0.00016946674],"domain_scores_gemma":[0.9996085,0.000051469506,0.00009856541,0.00018810082,0.000043850425,0.000009508389],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001967481,0.0000906791,0.00015678395,0.00006283322,0.00006047247,0.000004342827,0.00010766202,0.00018593915,0.0069828765],"category_scores_gemma":[0.000035322344,0.00008006541,0.000053390697,0.00007583575,0.00006285083,0.00009636174,0.000031713294,0.00010398601,0.001168123],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00025804082,0.000037088314,0.000042126845,0.0000058639985,0.00003382357,1.9792324e-7,0.00020883381,9.995773e-7,0.89196056,0.00005738727,0.079675026,0.027720027],"study_design_scores_gemma":[0.00041632383,0.00006185687,0.00018926924,0.000013977306,0.000008191851,0.0000063164434,0.000025641344,0.000004620725,0.6195989,0.00002161078,0.37959713,0.000056142984],"about_ca_topic_score_codex":0.0000062370123,"about_ca_topic_score_gemma":0.0000016693078,"teacher_disagreement_score":0.2999221,"about_ca_system_score_codex":0.000024331803,"about_ca_system_score_gemma":0.00002606719,"threshold_uncertainty_score":0.9996096},"labels":[],"label_agreement":null},{"id":"W7000499803","doi":"","title":"Étude des voies apoptotiques induites par le 4-hydroxynonénal dans les chondrocytes arthrosiques humains","year":2007,"lang":"fr","type":"other","venue":"Open MIND","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Chondrocyte; Mesenchymal stem cell; Extracellular matrix; Cell culture; Cell","score_opus":0.029582439554062367,"score_gpt":0.29096577507353316,"score_spread":0.2613833355194708,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7000499803","genre_codex":"empirical","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":null,"domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.608948,0.023178203,0.0006400789,0.00037643028,0.00051605055,0.00094430754,0.00007322752,0.000021278061,0.36530244],"genre_scores_gemma":[0.2517085,0.003978348,0.004534953,0.00012120197,0.00029939253,0.00007550916,0.000795585,0.00022719402,0.7382593],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.9963534,0.00086914276,0.0009376093,0.0007983162,0.000095164905,0.00094640045],"domain_scores_gemma":[0.9981622,0.00032920725,0.0006302089,0.0006378894,0.000168173,0.0000722945],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0008980302,0.000807149,0.0010433448,0.000521402,0.0011061811,0.000329769,0.0011625511,0.0018909996,0.048971955],"category_scores_gemma":[0.0002013514,0.0007762747,0.00028052204,0.00025414702,0.0020190605,0.0005733408,0.0005520801,0.00093811494,0.0070855543],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0007329888,0.0006036903,0.006677458,0.00012919973,0.0014194796,0.00006539775,0.027744653,0.000009384319,0.67665577,0.0023244182,0.0058949813,0.27774256],"study_design_scores_gemma":[0.00066287135,0.00031878625,0.006719217,0.00069316593,0.00012171993,0.000085737134,0.0014321494,0.0000023596965,0.4832081,0.00012275213,0.50611645,0.00051668345],"about_ca_topic_score_codex":0.0037586915,"about_ca_topic_score_gemma":0.015894951,"teacher_disagreement_score":0.5002215,"about_ca_system_score_codex":0.00019902244,"about_ca_system_score_gemma":0.00057803147,"threshold_uncertainty_score":0.9994688},"labels":[],"label_agreement":null},{"id":"W7008435399","doi":"","title":"Características físico-químicas de la leche cruda en las zonas de\\n\\nAroa y Yaracal, Venezuela","year":2002,"lang":"es","type":"other","venue":"Redalyc (Universidad Autónoma del Estado de México)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Nova scotia; West virginia; Bovine milk; Zona pellucida","score_opus":0.010138709944464447,"score_gpt":0.24071657032050345,"score_spread":0.230577860376039,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7008435399","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.77198035,0.011153564,0.0044726813,0.002343811,0.0011832493,0.0012213046,0.00026454768,0.0007042325,0.20667626],"genre_scores_gemma":[0.5581187,0.008892569,0.0024613114,0.000903484,0.00066607934,0.00005777516,0.00063889165,0.00069781917,0.42756337],"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","domain_scores_codex":[0.99168503,0.0039061825,0.00087242556,0.0012419575,0.00023581016,0.0020586147],"domain_scores_gemma":[0.995364,0.0018123465,0.000922273,0.0014268465,0.00017952522,0.00029498892],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"category_scores_codex":[0.0013372877,0.0012768129,0.0014590824,0.0014304253,0.0007323497,0.0002642691,0.0014444956,0.0050712056,0.008926455],"category_scores_gemma":[0.00059003773,0.001485556,0.00081818504,0.0007477585,0.001179699,0.00047955263,0.000476149,0.002850293,0.005031853],"study_design_candidate":"not_applicable","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0043882392,0.002313826,0.0070013073,0.0012880843,0.0059863413,0.008131655,0.012676773,0.00034821805,0.6509226,0.044186465,0.165654,0.097102515],"study_design_scores_gemma":[0.0038826563,0.00062664406,0.024668785,0.000886105,0.0013634571,0.003171563,0.0016950656,0.0011068553,0.01642016,0.0004478808,0.94385445,0.0018763971],"about_ca_topic_score_codex":0.0011916731,"about_ca_topic_score_gemma":0.000035524256,"teacher_disagreement_score":0.77820045,"about_ca_system_score_codex":0.0021520413,"about_ca_system_score_gemma":0.0015648558,"threshold_uncertainty_score":0.9999984},"labels":[],"label_agreement":null},{"id":"W7015405819","doi":"","title":"Structural analysis of the core region of lipopolysaccharides from Proteus mirabilis serotypes 06, 048 and 057","year":2000,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Serotype; Proteus mirabilis; Core (optical fiber); Proteus; Bacteria","score_opus":0.014567485265710535,"score_gpt":0.22469099103231624,"score_spread":0.2101235057666057,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7015405819","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99859816,0.00063499284,0.0000032583614,0.0001718089,0.000047919257,0.00016949768,0.000019332683,0.000009854982,0.00034519148],"genre_scores_gemma":[0.99885213,0.00006548083,0.000042059586,0.000020519863,0.0000074681675,0.000005685476,0.000052191546,0.000004121177,0.0009503119],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9993868,0.00012340199,0.00023911094,0.00012250995,0.000030384328,0.00009780261],"domain_scores_gemma":[0.9994665,0.000073727344,0.00013626098,0.00027084764,0.000047064914,0.0000056374943],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008054793,0.00007963911,0.00023786468,0.00007664502,0.00007273292,0.000003845547,0.0001323337,0.00011793019,0.0012812067],"category_scores_gemma":[0.000043857555,0.00005196129,0.00010210789,0.00022631136,0.00021800015,0.000059386275,0.000029930623,0.00009155113,0.000008973029],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00032037514,0.000011969638,0.01851571,0.000009350775,0.00055801397,3.4372312e-7,0.0010966724,0.000010667934,0.95684004,0.00024372266,0.00016533287,0.022227831],"study_design_scores_gemma":[0.00044264446,0.00007700564,0.2661552,0.00004738427,0.0005020003,0.0000076014185,0.00016542785,0.00015653545,0.7295903,0.0017371121,0.0010276979,0.00009106993],"about_ca_topic_score_codex":0.00047273477,"about_ca_topic_score_gemma":0.00005816571,"teacher_disagreement_score":0.24763949,"about_ca_system_score_codex":0.000007979545,"about_ca_system_score_gemma":0.000021077307,"threshold_uncertainty_score":0.99963176},"labels":[],"label_agreement":null},{"id":"W7015483326","doi":"","title":"Structural characterization of the lipid A region of Aeromonas salmonicida subsp. salmonicida lipopolysaccharide.: Carbohyd.Res.","year":2006,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Aeromonas salmonicida; Bacteria; Aeromonas; Immune system; Vibrionaceae","score_opus":0.0077059516102678475,"score_gpt":0.19776979049769494,"score_spread":0.1900638388874271,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7015483326","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997295,0.00023384768,0.000032436765,0.00035610778,0.00062173454,0.000272665,0.000012921491,0.000032346725,0.0011429283],"genre_scores_gemma":[0.99866617,0.000035329555,0.000014614929,0.000026722231,0.0000619587,0.000012261461,0.00011623881,0.000017322043,0.0010494035],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99868876,0.0002457991,0.00055650907,0.00018736397,0.00007522302,0.0002463593],"domain_scores_gemma":[0.998857,0.000066036795,0.000489227,0.00045091487,0.00012837046,0.000008440654],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00016013792,0.00016313742,0.0002975328,0.000109647386,0.00012382866,0.000007788677,0.00029689737,0.00022691367,0.00019917657],"category_scores_gemma":[0.00005201914,0.0001207787,0.00015648842,0.00019709016,0.00021552207,0.00013956738,0.000083248226,0.00019121631,0.000019928579],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00022791041,0.00003082307,0.00385393,0.000027477048,0.000045280434,0.0000010706245,0.0002774594,0.000007231372,0.99017966,0.0032690351,0.00013863445,0.001941482],"study_design_scores_gemma":[0.000514357,0.000073687654,0.10029516,0.000058963597,0.00004258576,0.000044835713,0.00003442766,0.000039907693,0.8974665,0.0004655187,0.00085261284,0.00011148554],"about_ca_topic_score_codex":0.00051674317,"about_ca_topic_score_gemma":0.000048944705,"teacher_disagreement_score":0.09644123,"about_ca_system_score_codex":0.000053242908,"about_ca_system_score_gemma":0.00008590391,"threshold_uncertainty_score":0.49252123},"labels":[],"label_agreement":null},{"id":"W7019811783","doi":"","title":"Inhibition of lipopolysaccharide-mediated toll-like receptor 4 activation abrogates gastric adenocarcinoma-associated peritoneal metastasis","year":2020,"lang":"en","type":"dissertation","venue":"eScholarship@McGill (McGill)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research","keywords":"Metastasis; Receptor; Cancer; Cytokine; Tyrosine kinase; Signal transduction","score_opus":0.013544858291069462,"score_gpt":0.22425983505163263,"score_spread":0.21071497676056317,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7019811783","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9913764,0.0011425804,4.7059262e-7,0.000056898636,0.0018365833,0.001012184,0.0016020811,0.00035353645,0.0026192646],"genre_scores_gemma":[0.9626884,0.00052360445,0.00009824352,0.00012635207,0.000037193946,0.0001856821,0.033514667,0.0001774641,0.0026483827],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9946138,0.0013415811,0.0017928898,0.0010635844,0.00036815167,0.0008199628],"domain_scores_gemma":[0.99595207,0.00054514187,0.0020067645,0.0005772736,0.0007996476,0.000119108445],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00084529904,0.00093175244,0.001387601,0.00092440034,0.0009200369,0.000052941567,0.0004970659,0.0019387328,0.0013697569],"category_scores_gemma":[0.0021796918,0.0010123146,0.00062322064,0.00097292237,0.00012953124,0.0009979496,0.00013061565,0.0019252576,0.0012530732],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0019964606,0.00029177414,0.000050014645,0.00023208684,0.0011181762,0.000009821325,0.0000812438,0.0000038329595,0.9756747,0.001804233,0.000070190814,0.018667506],"study_design_scores_gemma":[0.0021697145,0.00059320685,0.0017449991,0.00053461397,0.0005833357,0.000017678334,0.0010085736,0.000005386589,0.98023933,0.00033708144,0.011929169,0.000836916],"about_ca_topic_score_codex":0.0004588632,"about_ca_topic_score_gemma":0.0001678994,"teacher_disagreement_score":0.031912588,"about_ca_system_score_codex":0.00073463464,"about_ca_system_score_gemma":0.0001934645,"threshold_uncertainty_score":0.99954313},"labels":[],"label_agreement":null},{"id":"W7024158534","doi":"","title":"Rolle von Lymphotoxin Beta und Zelladhäsionsmolekül (CEACAM1) in Angeborene und adaptive Immunaktivierung","year":2017,"lang":"en","type":"other","venue":"DuEPublico (University of Duisburg-Essen)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"Canadian Institutes of Health Research; Mercator Research Center Ruhr; Deutsche Krebshilfe; Deutsche Forschungsgemeinschaft; Alexander von Humboldt-Stiftung; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Stem Cell Network; National Institutes of Health; National Science Foundation","keywords":"Immune system; Innate immune system; Acquired immune system; Lymphotoxin; Viral replication; Interferon; T cell; Virus","score_opus":0.011279577499306267,"score_gpt":0.2261993387475083,"score_spread":0.21491976124820203,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7024158534","genre_codex":"other","genre_gemma":"other","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"other","genre_consensus":"other","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.06847889,0.0957909,0.00036432882,0.0012328519,0.002403952,0.0020041743,0.00061737845,0.00045549416,0.828652],"genre_scores_gemma":[0.11914385,0.0070503186,0.00020544173,0.000047001213,0.00009593473,0.000004857365,0.0013632311,0.00028026817,0.8718091],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99761873,0.0005435087,0.00036406575,0.00068984955,0.00013952487,0.0006443317],"domain_scores_gemma":[0.9972695,0.00018466239,0.0010936357,0.0012389629,0.00015226865,0.000060948503],"candidate_categories":["metaepi_narrow","research_integrity","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00054584723,0.00053873437,0.0011311026,0.001454865,0.00041001049,0.000038438026,0.0011964986,0.0014919775,0.0048824404],"category_scores_gemma":[0.000091457274,0.00063177483,0.00036302698,0.00035057406,0.00073121267,0.0003777486,0.00055299007,0.0006446072,0.0006962123],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.003198035,0.0010338143,0.0016209927,0.00042930534,0.0062905974,0.0004134058,0.0027516023,0.000012052381,0.0797749,0.008519087,0.82778966,0.06816651],"study_design_scores_gemma":[0.004000229,0.00022262662,0.005131741,0.00085104577,0.00033064876,0.000011835496,0.0008138721,0.000014265947,0.0056188563,0.00011649087,0.98217803,0.0007103541],"about_ca_topic_score_codex":0.007235071,"about_ca_topic_score_gemma":0.0026154628,"teacher_disagreement_score":0.15438834,"about_ca_system_score_codex":0.00021397517,"about_ca_system_score_gemma":0.0004491293,"threshold_uncertainty_score":0.9998043},"labels":[],"label_agreement":null},{"id":"W7026542520","doi":"","title":"Activation of p38 plays a pivotal role in the inhibitory effect of lipopolysaccharide and interleukin-1beta-induced inhibition of long-term potentiation in rat dentate gyrus","year":2003,"lang":"en","type":"article","venue":"Arrow@dit (Dublin Institute of Technology)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Trinity College","funders":"Higher Education Authority; Health Research Board","keywords":"Long-term potentiation; Dentate gyrus; p38 mitogen-activated protein kinases; Perforant Pathway; Inhibitory postsynaptic potential; Stimulation; Lipopolysaccharide; Entorhinal cortex","score_opus":0.007090234311687467,"score_gpt":0.22750008665622312,"score_spread":0.22040985234453567,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7026542520","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99819654,0.00054444023,0.0000956918,0.00013894601,0.00032741908,0.0005799648,0.000005373065,0.000021939017,0.00008967077],"genre_scores_gemma":[0.99972486,0.0000897656,0.00004336499,0.000008771588,0.000006795941,0.000047733774,0.0000569037,0.000010002952,0.000011823728],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982914,0.00029056726,0.00089323724,0.00023376264,0.00008569696,0.00020538647],"domain_scores_gemma":[0.99873096,0.00012297828,0.000707224,0.0003258889,0.00010560301,0.000007335582],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000903765,0.00019098425,0.00048882177,0.0012253477,0.00004758746,0.000005323423,0.00020370353,0.00048547072,0.000015118469],"category_scores_gemma":[0.0004924012,0.00015895932,0.00008973961,0.00057674816,0.00042710232,0.0004803052,0.00006666311,0.00037230575,0.0000037553607],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00056457217,0.00017131762,0.024251148,0.00014793023,0.0000638008,0.0000052428945,0.00049582944,0.000025496722,0.96391577,0.0030480241,0.000009881455,0.007300991],"study_design_scores_gemma":[0.0026885064,0.00060308905,0.017829545,0.0004112188,0.000046377638,0.000047580812,0.00034239612,0.000010612502,0.97755665,0.0003187843,0.00003133659,0.00011389327],"about_ca_topic_score_codex":0.00017265517,"about_ca_topic_score_gemma":0.00014080791,"teacher_disagreement_score":0.013640893,"about_ca_system_score_codex":0.000057695408,"about_ca_system_score_gemma":0.00008583896,"threshold_uncertainty_score":0.64821726},"labels":[],"label_agreement":null},{"id":"W7043644379","doi":"","title":"Structural studies of the core region of Aeromonas salmonicida subsp. salmonicida lipopolysaccharide: Carbohydr.Res.","year":2006,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Aeromonas salmonicida; In vivo; Core (optical fiber); Oligosaccharide; Vibrionaceae","score_opus":0.029200151641660347,"score_gpt":0.26097155115632836,"score_spread":0.23177139951466802,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7043644379","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9920651,0.0055004745,0.0000034418254,0.00034075088,0.00061976153,0.00023373972,0.000007738774,0.000028732531,0.0012002711],"genre_scores_gemma":[0.9983722,0.00011311759,0.000026694672,0.000023349197,0.000035896563,0.000011302048,0.000021136586,0.000014609445,0.0013817175],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9987407,0.0001869433,0.00054742757,0.00018664329,0.00007627035,0.00026206594],"domain_scores_gemma":[0.9987521,0.00017774546,0.00041197755,0.00047409977,0.00017699938,0.000007036988],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00019067412,0.00017481038,0.00038758267,0.00009078451,0.00015535418,0.0000040543514,0.00031871203,0.00018758203,0.00009542919],"category_scores_gemma":[0.00012124415,0.00011838882,0.00017549774,0.00017235511,0.0004934542,0.00008400331,0.00013180383,0.00021266592,0.000015103111],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00021756189,0.000024906183,0.004997704,0.00004011328,0.00015378058,0.0000029148532,0.00058441854,0.000026221973,0.9841741,0.0066613564,0.0018011307,0.0013158456],"study_design_scores_gemma":[0.00064490526,0.00010838305,0.02987084,0.00008499488,0.00007944668,0.000063279665,0.0003672781,0.000016942773,0.96376604,0.004156951,0.00071228953,0.00012866627],"about_ca_topic_score_codex":0.00067291706,"about_ca_topic_score_gemma":0.00017151001,"teacher_disagreement_score":0.024873136,"about_ca_system_score_codex":0.000065590466,"about_ca_system_score_gemma":0.00007389302,"threshold_uncertainty_score":0.4827756},"labels":[],"label_agreement":null},{"id":"W7096892890","doi":"","title":"EFFET DE LA STIMULATION DES TLR SUR","year":2008,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Stimulation; Immune system; MEDLINE; Action (physics)","score_opus":0.012236665225889214,"score_gpt":0.2371495820293131,"score_spread":0.2249129168034239,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7096892890","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98421353,0.00047650645,0.0024662318,0.000034012446,0.000066443485,0.00005533787,4.2722266e-7,0.00007113447,0.012616373],"genre_scores_gemma":[0.98700273,0.00009294592,0.00018133975,0.000051537085,0.0000100367515,0.000004164124,0.00002831053,0.0000048706356,0.0126240365],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9994619,0.0002332754,0.00010015737,0.00006536645,0.00001027785,0.00012902894],"domain_scores_gemma":[0.99962926,0.00022510378,0.000023300721,0.00008745721,0.000029281513,0.0000055707587],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020707806,0.000053778203,0.00006934044,0.00004584357,0.00015591396,0.000004233808,0.000046812907,0.00012744065,0.0007767641],"category_scores_gemma":[0.00011226914,0.00004513955,0.000031095195,0.00004714032,0.00014073713,0.00009508664,0.00001350959,0.00007608998,0.000726285],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0001936178,0.000046652593,0.015788985,0.0000061207616,0.000037479786,0.0000065386753,0.0009971815,0.00008222396,0.96723115,0.001300841,0.004482483,0.009826715],"study_design_scores_gemma":[0.00089066534,0.00006842458,0.37160736,0.000007973703,0.000008444989,0.0002359136,0.000036627658,0.00008394076,0.59419715,0.0002402973,0.032535758,0.000087447566],"about_ca_topic_score_codex":0.00009349722,"about_ca_topic_score_gemma":0.0000032283144,"teacher_disagreement_score":0.373034,"about_ca_system_score_codex":0.000022836655,"about_ca_system_score_gemma":0.000039461782,"threshold_uncertainty_score":0.9335166},"labels":[],"label_agreement":null},{"id":"W7100834496","doi":"","title":"design of these studies. Corresponding Author:","year":2016,"lang":"en","type":"article","venue":"","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Bronchoalveolar lavage; Inflammation; Receptor; Antibody; Peripheral blood mononuclear cell; Cigarette smoke","score_opus":0.06617480714329818,"score_gpt":0.3094708223646833,"score_spread":0.24329601522138514,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7100834496","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.86330175,0.008789134,0.11867264,0.002150936,0.0017657725,0.00051736826,0.000005753601,0.00019314699,0.004603508],"genre_scores_gemma":[0.9607387,0.0001970153,0.0002330405,0.000028212384,0.0000071342606,0.000008808689,0.0000014190217,0.0000057316606,0.038779903],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9992585,0.00027133556,0.00021228835,0.000094982934,0.000016514741,0.00014636079],"domain_scores_gemma":[0.9989868,0.0006894955,0.00008238351,0.00016552373,0.00007115484,0.0000046464324],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00053893944,0.00007145386,0.00015672698,0.00009761616,0.000040651015,0.0000015791632,0.00009733281,0.00008669739,0.0010535967],"category_scores_gemma":[0.00034115987,0.000037630816,0.000036571564,0.00006705893,0.00012296204,0.00008922297,0.000040866064,0.000037668655,0.00084925524],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00044743548,0.000013894591,0.00012623754,0.0000038567105,0.00011609568,8.14167e-7,0.00060632394,0.000001401568,0.96986413,0.003148866,0.0050019417,0.020669032],"study_design_scores_gemma":[0.00061043765,0.00014056374,0.0005677935,0.00004894603,0.000014537955,0.000012218119,0.00045380477,0.0000016581331,0.9823334,0.0003761028,0.015370851,0.00006965517],"about_ca_topic_score_codex":0.0000041474796,"about_ca_topic_score_gemma":4.46185e-7,"teacher_disagreement_score":0.1184396,"about_ca_system_score_codex":0.000017257435,"about_ca_system_score_gemma":0.00003067584,"threshold_uncertainty_score":0.9999287},"labels":[],"label_agreement":null},{"id":"W7105799889","doi":"10.17605/osf.io/67e8r","title":"Supplemental materials for: Neonatal lipopolysaccharide administration causes long-term changes in adult mouse immunosteroids","year":2024,"lang":"","type":"article","venue":"OSF Preprints (OSF Preprints)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Lipopolysaccharide; Immune system; Administration (probate law); Disease; Immunity","score_opus":0.012715971917660409,"score_gpt":0.27432076618969825,"score_spread":0.26160479427203787,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7105799889","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98720133,0.00013932877,0.0005045556,0.0014330614,0.0036375995,0.0033508993,0.0011370417,0.00020662563,0.0023895304],"genre_scores_gemma":[0.87542224,0.0023576398,0.00007181614,0.000106219,0.00021194229,0.0010860157,0.00220937,0.00010803412,0.118426725],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99255866,0.0015338636,0.001796662,0.0026900044,0.00024832634,0.0011724572],"domain_scores_gemma":[0.99574256,0.0008562314,0.00046684124,0.0025278965,0.00030852473,0.000097925535],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00525229,0.0008197765,0.00092402607,0.00068603206,0.00040258135,0.00058607635,0.0011431973,0.0010556339,0.46345726],"category_scores_gemma":[0.001592082,0.0009396326,0.0003495594,0.00019677685,0.0004166685,0.00094106514,0.0012953554,0.00080447405,0.33984476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.004538161,0.0004345863,0.0025908416,0.0011491468,0.00093216926,0.00012912638,0.0056913397,0.000009760695,0.9532221,0.0018651637,0.0038328967,0.025604732],"study_design_scores_gemma":[0.0023094784,0.000041425166,0.0053876303,0.000842272,0.00027058244,0.0003876667,0.000703054,0.0000441617,0.9661492,0.00018950966,0.022861,0.0008140148],"about_ca_topic_score_codex":0.00055951794,"about_ca_topic_score_gemma":0.002869859,"teacher_disagreement_score":0.1236125,"about_ca_system_score_codex":0.0008053886,"about_ca_system_score_gemma":0.00066098484,"threshold_uncertainty_score":0.9993054},"labels":[],"label_agreement":null},{"id":"W7106339636","doi":"10.1093/jimmun/vkaf283.381","title":"FB-631 as a promising therapeutic tool for the treatment of non-small cell lung carcinoma 2469","year":2025,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec","funders":"","keywords":"Lung cancer; Immune system; Lung; Innate immune system; Treatment of lung cancer; Immunotherapy; CD8; Activator (genetics)","score_opus":0.010720616124998512,"score_gpt":0.2509592841878205,"score_spread":0.240238668062822,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7106339636","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.934574,0.059300575,0.0025236062,0.001739686,0.00092302816,0.0006318117,0.0000023841696,0.0000063280277,0.00029858373],"genre_scores_gemma":[0.9929503,0.002827409,0.000051770206,0.00012365752,0.000035800593,0.000024015471,0.0000037589837,0.000011530464,0.003971743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.998548,0.00045305747,0.00061649893,0.00008605015,0.00002755755,0.00026886282],"domain_scores_gemma":[0.99752444,0.0013467572,0.0005424753,0.0003670418,0.00021458395,0.0000046897408],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00072316953,0.00016545766,0.00039053702,0.00016070646,0.0002871509,0.000010349193,0.00043822973,0.0001874944,0.00006254658],"category_scores_gemma":[0.00006143996,0.00008406256,0.00025146955,0.00012498975,0.00023783487,0.00005720057,0.00003781563,0.00023132582,0.00002007915],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0045380117,0.0002149509,0.00045942832,0.000027434719,0.0012789344,0.0000019845909,0.0039350376,0.000029460505,0.9572842,0.00041948204,0.0002987799,0.031512305],"study_design_scores_gemma":[0.0045392136,0.0027333547,0.01638494,0.000066695364,0.0007920447,0.0002486191,0.001853514,0.000050360428,0.94334286,0.0004067466,0.029480534,0.00010111415],"about_ca_topic_score_codex":0.000071812385,"about_ca_topic_score_gemma":0.000004214921,"teacher_disagreement_score":0.058376316,"about_ca_system_score_codex":0.00010134798,"about_ca_system_score_gemma":0.00032978045,"threshold_uncertainty_score":0.34279716},"labels":[],"label_agreement":null},{"id":"W7110886033","doi":"10.1067/mai.2003.1781","title":"Systemic responsiveness to lipopolysaccharide and polymorphisms in the toll-like receptor 4 gene in human beings","year":2003,"lang":"en","type":"article","venue":"UWA Profiles and Research Repository (University of Western Australia)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Centre for Global Health Research","funders":"","keywords":"Lipopolysaccharide; TLR4; Gene; Receptor; Allele; Genotype; Locus (genetics)","score_opus":0.040898368476006024,"score_gpt":0.2928792424204242,"score_spread":0.25198087394441815,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7110886033","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9983254,0.0005933702,0.000008167447,0.00037182437,0.00009477207,0.0004980175,0.0000044989647,0.000008133537,0.000095795374],"genre_scores_gemma":[0.9916203,0.000098943514,0.000029318217,0.000011142885,0.000009284682,0.000004527844,0.000008122583,0.000006297213,0.008212048],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99774206,0.001350395,0.00020400973,0.00027451548,0.00010547921,0.00032353916],"domain_scores_gemma":[0.9993995,0.00017113576,0.00007541447,0.0002391604,0.00008171803,0.000033069784],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0014320719,0.00010803186,0.00022510508,0.00036917554,0.00036552866,0.000031051884,0.00024610764,0.00019135184,0.00002500582],"category_scores_gemma":[0.000041172098,0.00009794181,0.000033170218,0.00020990208,0.00032933653,0.00016582289,0.00010506996,0.00034930746,0.000019467276],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00042070335,0.0000448131,0.04595851,0.000057157475,0.000023094914,0.000075981574,0.0049016224,0.0000020218,0.947433,0.0007462861,0.00017220556,0.0001646179],"study_design_scores_gemma":[0.0012844672,0.00043337647,0.2178296,0.0003803026,0.000015285523,0.00038898017,0.017447492,0.0000012632835,0.75919175,0.000043941374,0.0027910916,0.00019247453],"about_ca_topic_score_codex":0.0024100386,"about_ca_topic_score_gemma":0.000067285575,"teacher_disagreement_score":0.18824126,"about_ca_system_score_codex":0.000062609026,"about_ca_system_score_gemma":0.0000648298,"threshold_uncertainty_score":0.39939514},"labels":[],"label_agreement":null},{"id":"W7112683640","doi":"","title":"UP-REGULATION OF TOLL-LIKE RECEPTORS (TLR) 6, 7 AND 8 IN KELOID SCARS: DOES KELOID DISEASE REFLECT AN ABNORMAL INNATE IMMUNE RESPONSE TO VIRAL INFECTION?","year":2011,"lang":"en","type":"article","venue":"Research Explorer (The University of Manchester)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Institute of Infection and Immunity","funders":"","keywords":"Innate immune system; Keloid; Disease; Immune system; Receptor; Pattern recognition receptor","score_opus":0.041355002682677285,"score_gpt":0.2754171267159933,"score_spread":0.234062124033316,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7112683640","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9987048,0.00018688425,0.00006707647,0.0002928937,0.00021124777,0.0004618084,0.0000051900042,0.000025866275,0.000044250282],"genre_scores_gemma":[0.99917454,0.00024442928,0.0000619325,0.000010269217,0.0000107235255,0.000006748979,0.00003075534,0.000012862861,0.0004477566],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9968982,0.0020002967,0.00030271226,0.0002914604,0.00014129202,0.00036607048],"domain_scores_gemma":[0.99884564,0.00024598953,0.00012761125,0.00047994274,0.00023949916,0.000061328596],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0023299798,0.0001464799,0.00025655405,0.0007444024,0.0002899484,0.000010893365,0.00033967794,0.0001534452,0.00031806203],"category_scores_gemma":[0.00016654981,0.00012202277,0.00007788756,0.0004122289,0.00056582794,0.00064150075,0.00031776298,0.0003425257,0.00008332541],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.06345018,0.00036038453,0.028103994,0.00012751712,0.00015447264,0.00001544137,0.12429736,0.000040939125,0.77290463,0.00029477463,0.00032089849,0.009929409],"study_design_scores_gemma":[0.0015686208,0.0007192522,0.8363609,0.00014638325,0.000024856476,0.000008115278,0.009685211,0.00002129156,0.14628868,0.00034261114,0.0046576457,0.00017647095],"about_ca_topic_score_codex":0.00022174166,"about_ca_topic_score_gemma":0.00004467787,"teacher_disagreement_score":0.80825686,"about_ca_system_score_codex":0.00012156651,"about_ca_system_score_gemma":0.00013423935,"threshold_uncertainty_score":0.49759442},"labels":[],"label_agreement":null},{"id":"W7132093122","doi":"","title":"Structure of a novel lipid A obtained from the lipopolysaccharides of Caulobacer crescentus","year":2008,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Caulobacter crescentus; Bacteria; Lipid A; Peptide sequence; Protein structure","score_opus":0.014074206261778016,"score_gpt":0.21985396686302747,"score_spread":0.20577976060124945,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132093122","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9978418,0.0007478741,0.00012493152,0.0003443368,0.00026562376,0.00012996077,0.00008407571,0.000015178668,0.00044623116],"genre_scores_gemma":[0.99908096,0.00010908366,0.00022748795,0.00007071465,0.000041027328,0.0000020438438,0.00005060593,0.000007378217,0.00041072542],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99932903,0.00009690509,0.000275961,0.000111129244,0.0000408363,0.0001461445],"domain_scores_gemma":[0.99925715,0.0001847164,0.00017244063,0.0002910929,0.00008778632,0.000006845214],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00007160039,0.00009595364,0.00020785478,0.00003986198,0.00009524655,0.0000020491088,0.00019946072,0.00014607325,0.0011811877],"category_scores_gemma":[0.00014389594,0.00006316599,0.00008022523,0.00010009303,0.00024086935,0.00005103213,0.00005281621,0.00014624636,0.000020939864],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00038542287,0.000051193496,0.0014746597,0.0000063873913,0.00012408261,5.8163135e-7,0.0015972416,0.000003762456,0.9919212,0.0006186172,0.0026269152,0.0011899468],"study_design_scores_gemma":[0.0010197107,0.000067121204,0.021723289,0.000029263854,0.000030663643,0.000024129671,0.00020559454,0.0000119505885,0.971734,0.00021357201,0.004872619,0.000068087036],"about_ca_topic_score_codex":0.00036518965,"about_ca_topic_score_gemma":0.000028122871,"teacher_disagreement_score":0.02024863,"about_ca_system_score_codex":0.00001150766,"about_ca_system_score_gemma":0.000080511716,"threshold_uncertainty_score":0.99973184},"labels":[],"label_agreement":null},{"id":"W7132247228","doi":"","title":"Chromosomal and plasmid-encoded enzymes are required for assembly of the R3-type core oligosaccharide in the lipopolysaccharide of Escherichia coli 0157:H7","year":2004,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Escherichia coli; Enzyme; Lipopolysaccharide; Core (optical fiber); Oligosaccharide; Enterobacteriaceae","score_opus":0.022451140201233826,"score_gpt":0.25297787904016733,"score_spread":0.23052673883893351,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132247228","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99711883,0.00070847897,0.000037337093,0.0010237946,0.00028777512,0.0005057143,0.000025561072,0.000012581616,0.00027989896],"genre_scores_gemma":[0.9993525,0.00009110361,0.00016186565,0.00016263945,0.000020550417,0.00003966526,0.000017135997,0.000011034667,0.0001434842],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99898916,0.00015421068,0.00040088073,0.000165876,0.000058754245,0.00023108903],"domain_scores_gemma":[0.99898326,0.00028289494,0.00031067556,0.00031656947,0.00009777235,0.000008799056],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00042890207,0.0001385318,0.00029080515,0.00006777253,0.00012560992,0.000008708512,0.00032829482,0.00020229974,0.00004495638],"category_scores_gemma":[0.00036389008,0.000087902896,0.000084845546,0.0001771447,0.0002536047,0.00010249884,0.00007102906,0.0001853983,0.0000072776143],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0006214227,0.0000750288,0.0008132367,0.000049109585,0.000056618934,0.0000010681417,0.0016128515,0.000018870218,0.98572665,0.01025979,0.000465228,0.0003001415],"study_design_scores_gemma":[0.0016716662,0.00024427075,0.010949331,0.000120733836,0.000041583455,0.000018677034,0.0008990629,0.000022601569,0.98257035,0.0025525484,0.00081052503,0.000098669734],"about_ca_topic_score_codex":0.000110125126,"about_ca_topic_score_gemma":0.00011246618,"teacher_disagreement_score":0.010136094,"about_ca_system_score_codex":0.000028173119,"about_ca_system_score_gemma":0.00016571039,"threshold_uncertainty_score":0.3584576},"labels":[],"label_agreement":null},{"id":"W7132472435","doi":"","title":"Structural analysis of the lipopolysaccharide from non-typeable Haemophilus influenza strain R2846","year":2008,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Strain (injury); Lipopolysaccharide; Haemophilus; Bacteria; Haemophilus influenzae","score_opus":0.01845443866690145,"score_gpt":0.23795048470707061,"score_spread":0.21949604604016917,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132472435","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.997615,0.00023758321,0.00004579749,0.00016286054,0.0002813727,0.000109137574,0.00007863663,0.00002120917,0.0014484181],"genre_scores_gemma":[0.99868745,0.00001955361,0.000090019916,0.0001728735,0.000023031409,0.0000043348855,0.000089999,0.00000755743,0.0009051776],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99911386,0.00014481589,0.00032266253,0.00016355462,0.000053232106,0.00020188639],"domain_scores_gemma":[0.9992148,0.00010148239,0.00017534266,0.00043371902,0.000063875435,0.00001077091],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00011610447,0.00011935108,0.00029885283,0.00014555496,0.0002187115,0.000005490511,0.0002917355,0.00016110473,0.002103396],"category_scores_gemma":[0.000077910736,0.00008338508,0.00021214782,0.00033120852,0.00021377247,0.00009950872,0.00007971357,0.00019304539,0.00010778367],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00013316389,0.000012132559,0.007873325,0.0000022444426,0.00089572964,0.0000018644383,0.0010161747,0.0001953811,0.98752505,0.00031620383,0.00057134236,0.0014573723],"study_design_scores_gemma":[0.00064775214,0.000038965933,0.23199846,0.000011824414,0.00043644753,0.000012421364,0.0001374457,0.00041228623,0.76347166,0.00074465695,0.0019506554,0.00013740087],"about_ca_topic_score_codex":0.00064541225,"about_ca_topic_score_gemma":0.000065562686,"teacher_disagreement_score":0.22412513,"about_ca_system_score_codex":0.000024495783,"about_ca_system_score_gemma":0.000075821954,"threshold_uncertainty_score":0.9988088},"labels":[],"label_agreement":null},{"id":"W7132601168","doi":"","title":"TLR-independent inductiion of human monocyte IL-1 by phosphoglycolipids from thermophilic bacteria","year":2008,"lang":"en","type":"article","venue":"NPARC","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":true,"route_about_ca":false,"ca_institutions":"","funders":"","keywords":"Thermophile; Monocyte; Bacteria; Immune system; Microorganism","score_opus":0.01531445931550524,"score_gpt":0.22406964969396892,"score_spread":0.20875519037846368,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7132601168","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9946507,0.001135464,0.000018911385,0.00015665244,0.0004539637,0.00017065434,0.000044547593,0.000047483576,0.0033216095],"genre_scores_gemma":[0.9957249,0.0003239647,0.000031746473,0.00008088998,0.0000464877,0.000017605911,0.00033853206,0.000017447912,0.003418433],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989664,0.00018504568,0.00035191773,0.00021780502,0.000050078008,0.0002287587],"domain_scores_gemma":[0.9993636,0.000051994695,0.00017584243,0.0003405387,0.000052040257,0.000015958158],"candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00012939752,0.0001530145,0.00027254442,0.00007112733,0.00018505982,0.0000051646048,0.00021164019,0.00027814705,0.0052229506],"category_scores_gemma":[0.000023586384,0.00014040011,0.00008788829,0.0000783231,0.0001556244,0.00015404636,0.00006500199,0.00021695063,0.00043567776],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003245375,0.00008911185,0.00032655845,0.00000410831,0.00010362548,0.0000025669185,0.00080694765,2.1303504e-7,0.9836594,0.00019126445,0.011525868,0.0029658128],"study_design_scores_gemma":[0.0010625847,0.00017503194,0.019347604,0.000016199645,0.00001962766,0.00002076642,0.00007577031,0.0000011166519,0.9345173,0.00032002365,0.044305194,0.00013877264],"about_ca_topic_score_codex":0.00019148427,"about_ca_topic_score_gemma":0.000003393901,"teacher_disagreement_score":0.049142078,"about_ca_system_score_codex":0.00004166847,"about_ca_system_score_gemma":0.000045023207,"threshold_uncertainty_score":0.9956864},"labels":[],"label_agreement":null},{"id":"W7136161570","doi":"10.6084/m9.figshare.4456550","title":"Additional file 4 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; Systemic inflammatory response syndrome; MEDLINE; Disease; Immune system","score_opus":0.021985786878097532,"score_gpt":0.2816245149760677,"score_spread":0.2596387280979702,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7136161570","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009633931,0.05715313,6.723905e-8,0.00013738417,0.00015731208,0.0006478436,0.9409632,0.000021276153,0.00082342216],"genre_scores_gemma":[0.00012901578,0.004008,0.000055909055,0.0005544189,0.00010950477,0.001695494,0.9912939,0.000031376767,0.0021223868],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99663025,0.0008767823,0.0013942918,0.00046266802,0.00012961034,0.0005063772],"domain_scores_gemma":[0.99434173,0.0038953251,0.00077186525,0.00048108527,0.0004599528,0.00005002663],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0001579849,0.0003557006,0.00088108797,0.0002603026,0.00013088572,0.000020115578,0.00030949345,0.00060072006,0.99957186],"category_scores_gemma":[0.024503015,0.00035342536,0.00029801938,0.0007101767,0.000067631525,0.00034203034,0.00030825776,0.00062649633,0.01237556],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0003781878,0.00009429419,0.0000013797836,0.013872098,0.00012696652,0.00012907448,0.00012286243,5.2046164e-7,0.0010578966,0.000001937025,0.9701684,0.014046347],"study_design_scores_gemma":[0.00039100432,0.00009661334,0.0002483028,0.4762397,0.00003109847,0.000083796585,0.00008256115,0.0000037450702,0.017113792,0.0000038124128,0.50544375,0.0002617784],"about_ca_topic_score_codex":0.0000021719973,"about_ca_topic_score_gemma":0.000058590304,"teacher_disagreement_score":0.98719627,"about_ca_system_score_codex":0.00011596197,"about_ca_system_score_gemma":0.0039290297,"threshold_uncertainty_score":0.99989176},"labels":[],"label_agreement":null},{"id":"W7136352992","doi":"10.6084/m9.figshare.4456568","title":"Additional file 1 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; MEDLINE; Systemic inflammatory response syndrome; Inflammation; Disease","score_opus":0.022213632351613624,"score_gpt":0.2816039210705994,"score_spread":0.2593902887189858,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7136352992","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009606871,0.05665663,6.639879e-8,0.00013832394,0.00015722023,0.00064724986,0.9414626,0.000021273752,0.00082056253],"genre_scores_gemma":[0.00012414111,0.003946016,0.00005649756,0.00055381976,0.00010926617,0.0017277251,0.991295,0.000031363565,0.0021562094],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.9966303,0.00087778433,0.0013931176,0.00046282954,0.00012959098,0.00050635653],"domain_scores_gemma":[0.9943078,0.003924037,0.00077166734,0.0004816157,0.00046483253,0.000050032628],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015792686,0.00035572704,0.00088077586,0.00026026656,0.00013082923,0.00002006122,0.00030945856,0.0006007203,0.99959016],"category_scores_gemma":[0.024865286,0.0003534492,0.0002980151,0.00071054755,0.00006761375,0.0003417028,0.00030836777,0.0006266507,0.01250149],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037169814,0.00009427303,0.0000013743341,0.013740685,0.00012704969,0.00012697717,0.00012270192,5.27907e-7,0.0010721374,0.0000018775993,0.9704961,0.013844567],"study_design_scores_gemma":[0.00038574074,0.000094739895,0.00024780858,0.47448757,0.00003104462,0.0000834339,0.00008243524,0.0000037129194,0.01704532,0.0000037482578,0.5072736,0.00026082093],"about_ca_topic_score_codex":0.0000021666613,"about_ca_topic_score_gemma":0.000057927227,"teacher_disagreement_score":0.9870887,"about_ca_system_score_codex":0.0001159503,"about_ca_system_score_gemma":0.0039422004,"threshold_uncertainty_score":0.99989176},"labels":[],"label_agreement":null},{"id":"W7136430980","doi":"10.6084/m9.figshare.4456562","title":"Additional file 2 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; MEDLINE; Systemic inflammatory response syndrome; Inflammation; Disease","score_opus":0.021415623076146577,"score_gpt":0.28101052862646697,"score_spread":0.2595949055503204,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7136430980","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.000095337586,0.05750428,6.487979e-8,0.00013749697,0.00015807267,0.0006456542,0.9405984,0.0000212552,0.0008394182],"genre_scores_gemma":[0.00012199868,0.004051899,0.000055186338,0.00055360893,0.00011089679,0.0016926874,0.9912198,0.00003130436,0.0021626297],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99663055,0.000877478,0.001393768,0.0004624709,0.00012955765,0.0005061643],"domain_scores_gemma":[0.9943662,0.003866592,0.0007727573,0.00048063856,0.0004637431,0.00005002312],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015703267,0.00035560975,0.0008809994,0.00026008984,0.00013083917,0.000020106389,0.00030927992,0.0006007239,0.999582],"category_scores_gemma":[0.024561664,0.0003533294,0.00029795532,0.00070997496,0.00006761278,0.00034194562,0.0003083228,0.0006265011,0.012364868],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00036927513,0.00009415834,0.0000013279839,0.013855985,0.0001269393,0.00013046872,0.00012270143,5.30073e-7,0.0010327852,0.0000019102056,0.970036,0.014227952],"study_design_scores_gemma":[0.00038750283,0.000094518065,0.00024305898,0.47065416,0.00003085022,0.00008341558,0.00008135749,0.0000036779036,0.016894635,0.0000037697139,0.51126343,0.00025959854],"about_ca_topic_score_codex":0.0000021893154,"about_ca_topic_score_gemma":0.000058282894,"teacher_disagreement_score":0.9872171,"about_ca_system_score_codex":0.00011598475,"about_ca_system_score_gemma":0.0039240737,"threshold_uncertainty_score":0.9998919},"labels":[],"label_agreement":null},{"id":"W7136548932","doi":"10.6084/m9.figshare.4456556","title":"Additional file 6 of Inflammatory mediators in intra-abdominal sepsis or injury – a scoping review","year":2021,"lang":"","type":"article","venue":"Figshare","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary; Foothills Medical Centre","funders":"","keywords":"Sepsis; Inflammation; MEDLINE; Inflammatory response; Immune system","score_opus":0.02180859092929772,"score_gpt":0.2813022206252419,"score_spread":0.2594936296959442,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7136548932","genre_codex":"dataset","genre_gemma":"dataset","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"dataset","genre_consensus":"dataset","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.00009615338,0.057263456,6.719142e-8,0.00013829119,0.00015734741,0.0006486847,0.94084173,0.000021276923,0.00083298807],"genre_scores_gemma":[0.00012784105,0.004003104,0.000055908506,0.00055498304,0.000109564775,0.0016981093,0.9912651,0.000031394025,0.0021539852],"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","domain_scores_codex":[0.99662936,0.00087759655,0.0013942769,0.00046273862,0.00012961893,0.00050641806],"domain_scores_gemma":[0.99434215,0.0038909342,0.0007718713,0.00048101688,0.00046399006,0.000050036342],"candidate_categories":["metaresearch","metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00015807428,0.00035574182,0.0008812364,0.00026028618,0.0001308684,0.000020116502,0.00030939965,0.000600719,0.999568],"category_scores_gemma":[0.024605008,0.0003534489,0.00029803836,0.00071045844,0.000067636145,0.00034206107,0.00030828879,0.0006266236,0.0123173],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00037396565,0.00009477294,0.0000013712652,0.013877569,0.00012698371,0.00012901919,0.00012318416,5.195098e-7,0.0010645759,0.000001955877,0.97014695,0.01405911],"study_design_scores_gemma":[0.00039051726,0.00009515069,0.00025047793,0.47576812,0.00003107366,0.00008363772,0.00008264232,0.0000036893537,0.01710413,0.0000038075707,0.50592524,0.00026153753],"about_ca_topic_score_codex":0.0000022164518,"about_ca_topic_score_gemma":0.000059884216,"teacher_disagreement_score":0.9872507,"about_ca_system_score_codex":0.00011583267,"about_ca_system_score_gemma":0.003934332,"threshold_uncertainty_score":0.99989176},"labels":[],"label_agreement":null},{"id":"W7139756705","doi":"","title":"The Role of ALPK1-TIFA Signalling in Intestinal Epithelial Cells","year":2025,"lang":"","type":"dissertation","venue":"TSpace (University of Toronto)","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Innate immune system; Immune system; Signalling; Innate lymphoid cell; Intestinal epithelium; Immunity; Signal transduction; Interleukin 22; Classical complement pathway","score_opus":0.005947116542320213,"score_gpt":0.21478640653134795,"score_spread":0.20883928998902773,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7139756705","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.934418,0.022693489,0.00035059373,0.00019175718,0.0010838107,0.00065910147,0.000036486676,0.00002044286,0.040546272],"genre_scores_gemma":[0.96324736,0.007261535,0.00012641026,0.0000033335375,0.000017584694,7.956179e-7,0.00019024135,0.000012226524,0.029140541],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9980324,0.0006295538,0.00046750327,0.0003593913,0.00010283264,0.00040832369],"domain_scores_gemma":[0.9975491,0.00072278373,0.00094813027,0.00039059683,0.0003657748,0.000023602162],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00063878857,0.00032257455,0.0006846879,0.00016128256,0.00047905472,0.0000110623605,0.0007918792,0.0007153889,0.005231069],"category_scores_gemma":[0.000113703,0.00035278773,0.0003336651,0.00014222154,0.0003334534,0.00029207725,0.00015727014,0.00052647217,0.000055497938],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0057702702,0.00013292415,0.00009026207,0.00017613349,0.0003453242,0.000005576373,0.023171894,0.000074968884,0.8451262,0.0017612979,0.00004588514,0.12329927],"study_design_scores_gemma":[0.002253368,0.00065204693,0.026456319,0.0013216579,0.00045106348,0.0000042532824,0.1981836,0.00063439686,0.75899565,0.0001729189,0.010396896,0.00047783495],"about_ca_topic_score_codex":0.12824148,"about_ca_topic_score_gemma":0.087065525,"teacher_disagreement_score":0.1750117,"about_ca_system_score_codex":0.00028983757,"about_ca_system_score_gemma":0.00061597745,"threshold_uncertainty_score":0.9998924},"labels":[],"label_agreement":null},{"id":"W7480551","doi":"10.4049/jimmunol.182.supp.135.20","title":"Essential role of albumin in CD14-independent activation of MD-2/TLR4 by endotoxin (135.20)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Immunovaccine (Canada)","funders":"","keywords":"TRIF; TLR4; Albumin; Chemistry; CD14; Receptor; Monomer; Divalent; Biochemistry; Cell biology; Molecular biology; Toll-like receptor; Biology; Innate immune system; Organic chemistry","score_opus":0.003741163417624317,"score_gpt":0.2153832467050936,"score_spread":0.21164208328746928,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W7480551","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.989174,0.00916632,0.0002641201,0.0006243089,0.00026954012,0.0001510757,0.000003852406,0.0000049778005,0.0003417919],"genre_scores_gemma":[0.99854463,0.001120452,0.000021499081,0.00004149372,0.000022964688,0.0000013954805,0.000014692608,0.000007675693,0.00022516436],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99786425,0.000777505,0.00095851364,0.00008300772,0.000074489144,0.0002422146],"domain_scores_gemma":[0.9981604,0.00029432896,0.0011052083,0.0002486233,0.0001833674,0.000008048202],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0010023655,0.00013963072,0.00045465713,0.000317781,0.000053620097,0.0000032971323,0.0004307594,0.00027043064,0.00018845625],"category_scores_gemma":[0.00017980553,0.0001019235,0.000124101,0.00017437573,0.00020211954,0.00018967631,0.000048038444,0.0005139865,0.000020590993],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0033548286,0.00024411034,0.00012264603,0.0000051430816,0.00019806938,0.000001797588,0.0012512178,0.0000555428,0.9846506,0.00041377218,0.0005767489,0.0091255],"study_design_scores_gemma":[0.0021025536,0.00095910614,0.006945313,0.000070479895,0.000047837562,0.00024413908,0.0010244279,0.0000037624825,0.9847886,0.0007699735,0.0029621834,0.00008160674],"about_ca_topic_score_codex":0.00009045968,"about_ca_topic_score_gemma":0.0000072307107,"teacher_disagreement_score":0.009370649,"about_ca_system_score_codex":0.000057323803,"about_ca_system_score_gemma":0.00011804471,"threshold_uncertainty_score":0.41563198},"labels":[],"label_agreement":null},{"id":"W74977902","doi":"10.1016/s0741-8329(00)00100-2","title":"Cellular immunity after ethanol exposure and burn injury","year":2000,"lang":"en","type":"article","venue":"Alcohol","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":55,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"","funders":"National Institute on Alcohol Abuse and Alcoholism; National Institutes of Health; McGill University","keywords":"Splenocyte; Ethanol; Immune system; Cellular immunity; Immunity; Immunology; Burn injury; Macrophage; Spleen; Medicine; Total body surface area; Internal medicine; Endocrinology; Pharmacology; Chemistry; In vitro; Biochemistry; Surgery","score_opus":0.008060128398300772,"score_gpt":0.2256203259314834,"score_spread":0.21756019753318262,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W74977902","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98994863,0.006133156,0.000008285233,0.00021330651,0.00015311282,0.0001521223,0.000005930749,0.000055073266,0.003330403],"genre_scores_gemma":[0.98925006,0.0003841454,0.0000165619,0.00022786712,0.000026230915,0.00003317583,0.000050821945,0.000011869967,0.009999254],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99918103,0.00022357065,0.00019175796,0.0001549808,0.00002248647,0.00022617412],"domain_scores_gemma":[0.9995928,0.000046146117,0.000035287387,0.00028637983,0.000025523013,0.000013864959],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.00020033805,0.00012627081,0.00014827325,0.000059451486,0.0001358387,0.000016331032,0.000100732366,0.0002296906,0.005964708],"category_scores_gemma":[0.000017735028,0.0001122609,0.000050596453,0.00006882688,0.00011589666,0.00014015526,0.00003869494,0.0002467764,0.0021513097],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00068476354,0.000041506544,0.0016255951,0.000009122632,0.00007805774,0.000009540288,0.00082768855,3.6793628e-7,0.92481554,0.00005254923,0.0007860802,0.071069196],"study_design_scores_gemma":[0.0008913433,0.00019353596,0.023908325,0.000024660783,0.000035318288,0.000031690528,0.0000906987,0.0000014888641,0.8226233,0.00012263886,0.15187931,0.00019769915],"about_ca_topic_score_codex":0.00005846618,"about_ca_topic_score_gemma":0.000002527952,"teacher_disagreement_score":0.15109324,"about_ca_system_score_codex":0.000010805586,"about_ca_system_score_gemma":0.000018712075,"threshold_uncertainty_score":0.99862564},"labels":[],"label_agreement":null},{"id":"W75527843","doi":"10.4049/jimmunol.182.supp.39.38","title":"Neonatal Tolerization with Bacterial Antigens Stimulates an Expansion of CD11b+ Leukocytes with Inhibitory Activity in IL-10 Gene-Deficient Mice (39.38)","year":2009,"lang":"en","type":"article","venue":"The Journal of Immunology","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"University of Alberta","funders":"","keywords":"Spleen; Antigen; Immune system; Biology; Immunology; Cytokine; Integrin alpha M; Microbiology","score_opus":0.007159693792436144,"score_gpt":0.21483816515805487,"score_spread":0.20767847136561873,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W75527843","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9971762,0.0015291558,0.0005975302,0.00020104018,0.0002652781,0.0001767311,0.000004869473,0.000012885325,0.00003635126],"genre_scores_gemma":[0.999419,0.0002863486,0.0001237615,0.0000241446,0.000039674087,0.0000011445783,0.000026991418,0.0000129484515,0.00006598743],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9982519,0.0007445954,0.0005197594,0.00013173415,0.00007683013,0.00027518714],"domain_scores_gemma":[0.9986021,0.00016087404,0.00070650165,0.00026295087,0.00025430418,0.000013268376],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00062214193,0.00019156071,0.00042163933,0.00028353403,0.00012872959,0.000010668894,0.00027539235,0.0002176093,0.00011376897],"category_scores_gemma":[0.00004941731,0.00011676255,0.000053823213,0.0001748169,0.00031494294,0.00040503682,0.0000355483,0.00039736618,0.000011423415],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.020257242,0.00017400419,0.00024865504,0.000005621059,0.0001176904,0.000013439924,0.002219522,0.0011046017,0.9688464,0.000027698117,0.000011137844,0.0069740266],"study_design_scores_gemma":[0.0028255023,0.0049848678,0.06894907,0.00010073359,0.000057037458,0.00081774784,0.00070040964,0.00003456184,0.9209936,0.000019035728,0.00038065392,0.0001367255],"about_ca_topic_score_codex":0.000055075325,"about_ca_topic_score_gemma":0.000024884712,"teacher_disagreement_score":0.06870042,"about_ca_system_score_codex":0.00006110374,"about_ca_system_score_gemma":0.00025717643,"threshold_uncertainty_score":0.47614387},"labels":[],"label_agreement":null},{"id":"W777871293","doi":"","title":"Toll-like receptor 3 is expressed in all layers of the human retina","year":2014,"lang":"en","type":"article","venue":"Investigative Ophthalmology & Visual Science","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"McGill University","funders":"","keywords":"Retina; Toll-like receptor; Toll; Receptor; Cell biology; Chemistry; Neuroscience; Biology; Immunology; Innate immune system; Biochemistry","score_opus":0.03488652399634679,"score_gpt":0.3178733277483678,"score_spread":0.282986803752021,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W777871293","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9953202,0.00007032615,0.0000010303075,0.0008169005,0.0004942894,0.00023967348,0.0000043605314,0.000016356042,0.003036844],"genre_scores_gemma":[0.99855196,0.0000027709955,0.00006880505,0.00040618656,0.000013183627,0.000025120124,0.000007842331,0.0000083959,0.0009157024],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99769956,0.0008610848,0.00041932677,0.0004273173,0.00010632865,0.00048635423],"domain_scores_gemma":[0.99892014,0.00023582023,0.0002934284,0.000383496,0.00013037675,0.00003676],"candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0015881325,0.0001730002,0.00028090153,0.0001866409,0.0003152702,0.000012892158,0.0008025184,0.00020845383,0.00033677134],"category_scores_gemma":[0.0008049438,0.00012685274,0.00006973931,0.0006150875,0.0052529136,0.00023009162,0.00027725802,0.0003298671,0.00013273791],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.000039346465,0.000053846317,0.018005047,0.000006944587,0.000012953952,0.0000016716546,0.001981942,0.0000040182153,0.9786536,0.000721831,0.00041248297,0.00010630429],"study_design_scores_gemma":[0.00043501574,0.00029150827,0.10545765,0.000056220553,0.0000067382775,0.0000349312,0.0002226266,0.000014300009,0.88955384,0.0014713657,0.0023268936,0.00012889436],"about_ca_topic_score_codex":0.00020564572,"about_ca_topic_score_gemma":0.0000049152677,"teacher_disagreement_score":0.08909976,"about_ca_system_score_codex":0.00007492654,"about_ca_system_score_gemma":0.00019969691,"threshold_uncertainty_score":0.9974542},"labels":[],"label_agreement":null},{"id":"W802300164","doi":"10.1371/journal.pone.0132061","title":"Age-Related Gene Expression Differences in Monocytes from Human Neonates, Young Adults, and Older Adults","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":49,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of British Columbia","funders":"Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research, University of California Los Angeles; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; Canadian Institutes of Health Research; National Cancer Institute; Children's Hospital Foundation; National Institutes of Health; Michael Smith Health Research BC; BC Children's Hospital","keywords":"Biology; Gene expression; Gene; Young adult; Transcriptome; Context (archaeology); Innate immune system; Immunology; Immune system; Monocyte; Gene expression profiling; Genetics; Medicine; Internal medicine","score_opus":0.02731215793218775,"score_gpt":0.2111121018193191,"score_spread":0.18379994388713136,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W802300164","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.98796517,0.011344274,0.0000036465283,0.00007948797,0.0000865915,0.00025660964,0.000010068306,0.00006266847,0.00019149955],"genre_scores_gemma":[0.9981245,0.00038302614,0.00015893018,0.000016645476,0.000019143527,0.000034277775,0.0004100456,0.000012480269,0.0008409428],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9989535,0.00021080271,0.0003142711,0.0002570844,0.0000517934,0.0002125494],"domain_scores_gemma":[0.99954885,0.00007622502,0.000106046995,0.00018758785,0.0000559942,0.000025314022],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00013053471,0.00014789906,0.00028135834,0.000110688474,0.000087229855,0.000018508523,0.00012279439,0.00026176503,0.00015246708],"category_scores_gemma":[0.00008835793,0.00012640552,0.000022499593,0.000071625655,0.00009410362,0.0001565153,0.00008280731,0.00022542173,0.00012886708],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.00074142864,0.00042767022,0.04060925,0.000020296215,0.000120445395,0.000012731533,0.0063887467,2.1649215e-7,0.9497994,0.00002411389,0.00009916084,0.0017564951],"study_design_scores_gemma":[0.003973966,0.00015317101,0.22949104,0.0008040064,0.000037390866,0.0000034181037,0.00073498895,0.000037666538,0.76428586,0.0002695712,0.0000253831,0.00018352551],"about_ca_topic_score_codex":0.0012416567,"about_ca_topic_score_gemma":0.000121432786,"teacher_disagreement_score":0.1888818,"about_ca_system_score_codex":0.000027735758,"about_ca_system_score_gemma":0.000018249546,"threshold_uncertainty_score":0.51546675},"labels":[],"label_agreement":null},{"id":"W958939730","doi":"","title":"Hematological evaluation and oxidative metabolism of neutrophils in Quarter horses between 12 and 16 months of age.","year":2000,"lang":"en","type":"article","venue":"Veterinária notícias/Veterinária Notícias","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":false,"route_ca_aff":false,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"","funders":"","keywords":"Oxidative metabolism; Oxidative phosphorylation; Quarter (Canadian coin); Energy metabolism; Physiology; Medicine; Metabolism; Biology; Internal medicine; Biochemistry; Geography","score_opus":0.03094603355211932,"score_gpt":0.28338057772666714,"score_spread":0.2524345441745478,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W958939730","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9950328,0.0027199597,0.00004406551,0.0001478218,0.00025313444,0.0009198464,0.00006571237,0.00004680751,0.0007698554],"genre_scores_gemma":[0.9983479,0.00088522036,0.0002992018,0.000046262627,0.0000588395,0.00010391728,0.00013895059,0.000029963838,0.000089745554],"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","domain_scores_codex":[0.9963333,0.0010316517,0.0013013802,0.0006189951,0.00017929017,0.0005353537],"domain_scores_gemma":[0.99834126,0.0004902427,0.0004647663,0.00050233543,0.00014367363,0.000057724912],"candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0011195708,0.00046458087,0.0012397219,0.00040851202,0.00011173662,0.000032822583,0.0002752031,0.0005492321,0.0009877295],"category_scores_gemma":[0.00023155044,0.00041815554,0.00017057013,0.00027915073,0.0005735255,0.0004204809,0.0001575898,0.0003441422,0.000048234644],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0027977682,0.00021445207,0.0064238524,0.00016654852,0.0003953149,0.000024137378,0.0037301995,0.0000155662,0.91359556,0.00041298094,0.00012744241,0.07209618],"study_design_scores_gemma":[0.008291275,0.0019735834,0.7039903,0.00035626325,0.000466669,0.00021093289,0.0008572202,0.00007843921,0.2720832,0.0013302615,0.009451293,0.000910584],"about_ca_topic_score_codex":0.0004299146,"about_ca_topic_score_gemma":0.000066020606,"teacher_disagreement_score":0.69756645,"about_ca_system_score_codex":0.000057461875,"about_ca_system_score_gemma":0.00006914976,"threshold_uncertainty_score":0.9999255},"labels":[],"label_agreement":null},{"id":"W972614661","doi":"10.1016/j.vaccine.2015.07.070","title":"Reduction of avian influenza virus shedding by administration of Toll-like receptor ligands to chickens","year":2015,"lang":"en","type":"article","venue":"Vaccine","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":52,"is_retracted":false,"has_abstract":false,"route_ca_aff":true,"route_ca_fund":true,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"Canadian Animal Health Institute; University of Guelph","funders":"Agriculture and Agri-Food Canada; Ontario Ministry of Agriculture, Food and Rural Affairs; University of Guelph","keywords":"Viral shedding; TLR2; Virus; Biology; Virology; Receptor; Interferon; Toll-like receptor; Immune system; Influenza A virus subtype H5N1; Innate immune system; Influenza A virus; Microbiology; Immunology; Genetics","score_opus":0.016036335808585662,"score_gpt":0.26888318267663963,"score_spread":0.252846846868054,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W972614661","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99773127,0.000759184,0.00010140471,0.00035738986,0.0005913619,0.00017725624,0.00001954613,0.000026862446,0.00023573873],"genre_scores_gemma":[0.99844545,0.00003666942,0.00009401805,0.000049546896,0.00003725084,0.00000972396,0.00016770589,0.000009630177,0.001150011],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.999196,0.0000682755,0.00042373658,0.0001356371,0.000038740778,0.0001375937],"domain_scores_gemma":[0.99940294,0.000024096738,0.00019577719,0.00020229392,0.00014989277,0.000024994217],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003158833,0.00009990516,0.00021991454,0.00014077243,0.000040458854,0.000004527692,0.00009553125,0.00015610456,0.00016296764],"category_scores_gemma":[0.00013583583,0.000093148956,0.00004265692,0.00018546103,0.000012249275,0.00013420371,0.000029173141,0.00009235503,0.00014473693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0017523045,0.0000670787,0.00036690405,0.000012878991,0.000045419176,2.0290408e-7,0.0008704261,0.000008101249,0.97703785,0.00008117186,0.017615726,0.0021419278],"study_design_scores_gemma":[0.0010001864,0.0007490823,0.0014397659,0.000039431565,0.000021229282,0.000021794534,0.00032234786,0.0000022860486,0.9472255,0.000021525328,0.04907035,0.000086480235],"about_ca_topic_score_codex":0.000073521864,"about_ca_topic_score_gemma":0.0000095419455,"teacher_disagreement_score":0.031454626,"about_ca_system_score_codex":0.0000328096,"about_ca_system_score_gemma":0.00007626857,"threshold_uncertainty_score":0.37985042},"labels":[],"label_agreement":null},{"id":"W98309073","doi":"10.1096/fasebj.22.1_supplement.846.20","title":"The role of GITR in the anti‐influenza CD8 memory T cell response","year":2008,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":true,"ca_institutions":"Muscular Dystrophy Canada; University of Toronto","funders":"","keywords":"Immunology; CD8; Tumor necrosis factor alpha; Cytotoxic T cell; T cell; Cytokine; Biology; Memory T cell; Antigen; Immune system; In vitro","score_opus":0.011837890857010747,"score_gpt":0.226147540376437,"score_spread":0.21430964951942624,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W98309073","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.9865449,0.0102913845,0.0000067582105,0.0009299629,0.00023517295,0.00013241115,0.000002228018,0.000006930615,0.0018502196],"genre_scores_gemma":[0.9977888,0.0006854802,0.000004556852,0.00026578733,0.00004374969,0.000004485833,0.0000016064528,0.0000075417997,0.0011980336],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.9970438,0.0021390526,0.0003995084,0.00007167983,0.00007572733,0.00027021556],"domain_scores_gemma":[0.9982487,0.0010698476,0.00025092787,0.0003552529,0.000066284556,0.000008995571],"candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003263174,0.0001042855,0.00014528498,0.00008243019,0.00087141054,0.000020764435,0.0005986075,0.000099758705,0.00010404979],"category_scores_gemma":[0.00021372801,0.00004565742,0.0001179728,0.00015056148,0.00037302732,0.00009803279,0.000046842822,0.00063843955,0.00019697702],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0024130347,0.000043683896,0.0008585119,0.0000012889442,0.000036255762,0.000016631644,0.0054573477,0.000042420037,0.9876759,0.00008977037,0.0012465664,0.0021185845],"study_design_scores_gemma":[0.0009439947,0.00014556537,0.0272956,0.000016854347,0.000019724437,0.0014831927,0.0050386777,0.000007425953,0.9203555,0.00028382786,0.0443378,0.00007184553],"about_ca_topic_score_codex":0.000029862937,"about_ca_topic_score_gemma":0.0000042416423,"teacher_disagreement_score":0.067320414,"about_ca_system_score_codex":0.000023559036,"about_ca_system_score_gemma":0.00015921691,"threshold_uncertainty_score":0.67022735},"labels":[],"label_agreement":null},{"id":"W991149868","doi":"10.1096/fasebj.22.2_supplement.557","title":"Lipoteichoic acid is able to inhibit leukocyte recruitment in vivo","year":2008,"lang":"en","type":"article","venue":"The FASEB Journal","topic":"Immune Response and Inflammation","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"route_ca_aff":true,"route_ca_fund":false,"route_ca_venue":false,"route_about_ca":false,"ca_institutions":"University of Calgary","funders":"","keywords":"Lipoteichoic acid; TLR2; TRIF; Chemokine; Receptor; TLR4; In vivo; Lipopolysaccharide; Inflammation; Toll-like receptor; Cell biology; Immune system; Innate immune system; Chemistry; Cytokine; Microbiology; Immunology; Biology; Staphylococcus aureus; Biochemistry; Bacteria","score_opus":0.041316639154354816,"score_gpt":0.2636881515817164,"score_spread":0.22237151242736156,"validation_status":"score_only:v0-immature-baseline","prediction":{"id":"W991149868","genre_codex":"empirical","genre_gemma":"empirical","domain_codex":null,"domain_gemma":null,"model_version":"codex-gemma-dda1882f352a","genre_candidate":"empirical","genre_consensus":"empirical","domain_candidate":null,"domain_consensus":null,"prediction_status":"machine_predicted_unvalidated","genre_scores_codex":[0.99249333,0.002382305,0.00011269313,0.0030550675,0.00046776186,0.00025589622,0.0000023909313,0.000016846043,0.0012136974],"genre_scores_gemma":[0.9879192,0.0007163551,0.0000514152,0.0015251151,0.00008202852,0.000021014637,0.0000031638613,0.000011063364,0.009670646],"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","domain_scores_codex":[0.99887013,0.00028758802,0.00033622328,0.000115022136,0.00005310422,0.00033795545],"domain_scores_gemma":[0.9995409,0.000058462374,0.00010760121,0.00021765349,0.00004838516,0.000026964932],"candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0006172709,0.000121587684,0.00017380863,0.0001705657,0.00042682415,0.000019882844,0.00023388218,0.000110137946,0.0014302472],"category_scores_gemma":[0.000058997415,0.00008229925,0.00008225007,0.0001810574,0.00007033458,0.00014020523,0.00006126025,0.00045473894,0.0014482061],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_system_candidate":false,"about_ca_system_consensus":false,"study_design_scores_codex":[0.0004007136,0.000033826134,0.0002924292,0.00000159373,0.000045655197,0.00003555651,0.0028412254,0.000035537734,0.96905446,0.000021473237,0.024148114,0.0030894328],"study_design_scores_gemma":[0.0008535436,0.00016018022,0.0013385385,0.000041639025,0.000009664473,0.00148285,0.00020329814,0.000002835957,0.8826789,0.000064938846,0.1130685,0.00009507269],"about_ca_topic_score_codex":0.00004657004,"about_ca_topic_score_gemma":0.000013026619,"teacher_disagreement_score":0.088920385,"about_ca_system_score_codex":0.00012528148,"about_ca_system_score_gemma":0.00009770908,"threshold_uncertainty_score":0.9994826},"labels":[],"label_agreement":null}]}